Psyllid ID: psy3337

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR
Secondary Structure (PSIPRED)
ccEEEEEccccEEEEEcccccEEEEEEEEEEEEEccEEEEEEEcccccEEEEcccccEEEEcccccccEEEcccccEEEEEEEcccccEEEEEccccEEEEEEccccEEEcccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEcccEEEEccccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEc
Secondary Structure Prediction (SSPRO)
ccccEEccccEEEEEEccccccEEEEEEcEEEEccccccccccccccccccEcccccccccccccccccEcccccccEEEcccccccccccccccccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEcccccccccccccEEEEEEcccccEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEccccEEEc
Coil and Loop (DISEMBL)
mncdvhsngknIYVVAGQENSNQLYKITAEFTQmngvvkskesnntADTIVRKRKEKDKenakqkggkkeksnekgknkkdkiedppilnsidskeknlrfgfktfdsvqtvfaGSESLQRVVRLSrngdlmvtggtdghlrlwsfpkmkpllhieahskeiddvdfsisGEQIVSIAKDGKAFVwnskngslskelkwntpdniKYLFKRCRyglvedspkrsrlftlanplaqnkrgisyVQQWDVDSGRLRLAREMKESLSALavrddgrfvAVGTMFTGSVFVYIAFSLQMCR
Flexible Loop (DISEMBL)
MNCDVHSNGKNIYVVAGQENSNQLYKITAEFtqmngvvkskesnntadtivrkrkekdkenakqkggkkeksnekgknkkdkiedppilnsidskekNLRFGFKTFDSVQtvfagseslqrvVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSkngslskelkwntpdnIKYLFKRCRYGLVEDSPKRSRLFTLanplaqnkrgisyvqqWDVDSGRLRLAREMKESLsalavrddgrfVAVGTMFTGSVFVYIAFSLQMCR
Low Complexity Region (SEG)
MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEkdkenakqkggkkeksnekgknkkdkiedPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR
Disordered region (IsUnstruct)
**********NIYVVAGQENSNQLYKITAEFTQM****************************************************************LRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ***
Disordered Region (DISOPRED)
*******NGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQ***************KDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR
Disordered Region (DISEMBL)
MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVR******************************IEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR
Disordered Region (DISPRO)
*NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM******************************************KNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q9WUQ2	417	Prolactin regulatory elem	yes	N/A	0.764	0.544	0.358	2e-29
Q9WTV0	417	Prolactin regulatory elem	yes	N/A	0.764	0.544	0.341	5e-29
Q9HCU5	417	Prolactin regulatory elem	yes	N/A	0.764	0.544	0.337	1e-27
Q8GYE0	398	SEC12-like protein 1 OS=A	no	N/A	0.498	0.371	0.260	6e-09
P49695	742	Probable serine/threonine	no	N/A	0.474	0.190	0.275	1e-06
P87060	775	WD repeat-containing prot	yes	N/A	0.377	0.144	0.282	3e-06
Q6L4F8	336	Guanine nucleotide-bindin	no	N/A	0.575	0.508	0.251	6e-06
Q05B30	751	WD repeat-containing prot	no	N/A	0.346	0.137	0.327	7e-06
Q6TEN6	724	WD repeat-containing prot	no	N/A	0.212	0.087	0.380	1e-05
Q39221	393	SEC12-like protein 2 OS=A	no	N/A	0.531	0.402	0.272	1e-05

>sp|Q9WUQ2|PREB_MOUSE Prolactin regulatory element-binding protein OS=Mus musculus GN=Preb PE=1 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 13/240 (5%)

Query: 63  KQKGGKKEKSNEKGKNKKDKIEDPPIL--NSIDSKEKNLRFGFKTFDSVQTVFAGSESLQ 120
           +QKG K EKS  K +  + +   PP    +      + +    K  ++VQT F+ +E LQ
Sbjct: 99  QQKGSKAEKSGSKEQGPRQRKGAPPAEKKSGAQVHPEGVELKVKNLEAVQTDFS-NEPLQ 157

Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
           +VV  + +  L+ TGGTDGH+R+W  P ++ +L  +AH  EI D+     G ++V++  D
Sbjct: 158 KVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVLEFKAHEGEIGDLTLGPDG-KLVTVGWD 216

Query: 181 GKAFVWNSKNGSLSKELKW--NTP--DNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN 236
            KA VW      L  +L+W  N P   N  Y ++ CR+G V D     RLFT+  P  + 
Sbjct: 217 FKASVWQKDQ--LVTQLQWQENGPASSNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRL 274

Query: 237 KR-GISYVQQWDVDSG-RLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
           ++    Y+  WD  +   LR      E +S L+V D G F+ +GT+ TGSV +YIAFSLQ
Sbjct: 275 RQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTV-TGSVAIYIAFSLQ 333

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.
Mus musculus (taxid: 10090)

>sp|Q9WTV0|PREB_RAT Prolactin regulatory element-binding protein OS=Rattus norvegicus GN=Preb PE=2 SV=2

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 13/240 (5%)

Query: 63  KQKGGKKEKSNEKGKNKKDKIEDPPIL--NSIDSKEKNLRFGFKTFDSVQTVFAGSESLQ 120
           +QKG K EKS  K +  + +    P    +  +   + +    K  ++VQT F+ +E LQ
Sbjct: 99  QQKGSKAEKSGSKEQGPRQRKGAAPAEKKSGAEVHPEGVELKVKNLEAVQTDFS-TEPLQ 157

Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
           +VV  + +  L+ TGG+DGH+R+W  P ++ +L  +AH  EI D+     G ++V++  D
Sbjct: 158 KVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVLEFKAHEGEIGDLALGPDG-KLVTVGWD 216

Query: 181 GKAFVWNSKNGSLSKELKWN----TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN 236
            KA VW      L  +L+W     T  N  Y ++ CR+G V D P   RLFT+  P  + 
Sbjct: 217 FKASVWQKDQ--LVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLFTVQIPHKRL 274

Query: 237 KR-GISYVQQWDVDSGRLRLAREM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
           ++    Y+  WD  +      R    E +S L V + G F+ +GT+ TGSV +YIAFSLQ
Sbjct: 275 RQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGLGTV-TGSVAIYIAFSLQ 333

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription. Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 13/240 (5%)

Query: 63  KQKGGKKEKSNEKGKNKKDKIEDPPILNSI--DSKEKNLRFGFKTFDSVQTVFAGSESLQ 120
           +Q+G K EK+  K +  + +    P       +++ + L    +   +VQT F+ S+ LQ
Sbjct: 99  QQQGNKAEKAGSKEQGPRQRKGAAPAEKKCGAETQHEGLELRVENLQAVQTDFS-SDPLQ 157

Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
           +VV  + +  L+ TGGTDG++R+W  P ++ +L  +AH  EI+D+     G ++V++ +D
Sbjct: 158 KVVCFNHDNTLLATGGTDGYVRVWKVPSLEKVLEFKAHEGEIEDLALGPDG-KLVTVGRD 216

Query: 181 GKAFVWNSKNGSLSKELKW--NTP--DNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN 236
            KA VW      L  +L W  N P   +  Y ++ CR+G V D P   RLFT+  P  + 
Sbjct: 217 LKASVWQKDQ--LVTQLHWQENGPTFSSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKRL 274

Query: 237 KR-GISYVQQWDVDSG-RLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
           ++    Y+  WD  +   LR      E +S L V + G F+ +GT+ TGSV +YIAFSLQ
Sbjct: 275 RQPPPCYLTAWDGSNFLPLRTKSCGHEVVSCLDVSESGTFLGLGTV-TGSVAIYIAFSLQ 333

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Homo sapiens (taxid: 9606)

>sp|Q8GYE0|PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 13/161 (8%)

Query: 119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA 178
           LQ+ +  S +G  +  GG DG LR+  +P +  +L      K I D+DFS+  E + + +
Sbjct: 124 LQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTS 183

Query: 179 KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR 238
            DG A +W +++G     L+ +  +NI+     CR+     S   ++ F      A  + 
Sbjct: 184 TDGSARIWKAEDGFPLSTLERSGDENIEL----CRF-----SKDGTKPFLFC---AAQRG 231

Query: 239 GISYVQQWDVDSG-RLRLAREMKESLSALAVRDDGRFVAVG 278
               V  +D+ +  +L   +  +++ S +AV  DG+++A+G
Sbjct: 232 DTPMVNVYDISTWKKLGFKKLSRKTASTMAVSLDGKYIALG 272

Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
           R V  S +G L+ +G  D  +RLW     +     E H+  + D+ FS  G  + S ++D
Sbjct: 505 RAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRD 564

Query: 181 GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI 240
           G A +WN   G+    LK +T     Y++       V  SP  S        +A   R  
Sbjct: 565 GTARLWNVATGTEHAVLKGHT----DYVYA------VAFSPDGSM-------VASGSRD- 606

Query: 241 SYVQQWDVDSGRLR-LAREMKESLSALAVRDDGRFVAVGT 279
             ++ WDV +G+ R + +   E++ +LA   DG  +  G+
Sbjct: 607 GTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGS 646

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P87060|POP1_SCHPO WD repeat-containing protein pop1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pop1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 83  IEDPPILNSIDSKEKNLRFGFKTFDS--VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGH 140
           ++DPP +N  ++ ++N  F   T +   ++T+   ++S++ V  L   GDL+V+   DG 
Sbjct: 542 LDDPPFVNVNENPDQNNDFTSATTNPFYIRTLRGHTDSVREVACL---GDLIVSASYDGT 598

Query: 141 LRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
           LR+W       L  +  H   +  V  + S +Q +S   D K  +WN ++G L + L
Sbjct: 599 LRVWKASTGVCLHVLRGHVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTL 655

Involved in maintenance of ploidy through proteasome dependent degradation of CDK inhibitor rum1 and S-phase initiator cdc18. Functions as a recognition factor for rum1 and cdc18, which are subsequently ubiquitinated and targeted to the 26S proteasome for degradation. Together with pop2, required for cig2 instability during G2 and M phase and cig2 degradation in exponentially growing cells. Regulates cell-cycle progression under starvation through the rum1 protein.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6L4F8|GBLPB_ORYSJ Guanine nucleotide-binding protein subunit beta-like protein B OS=Oryza sativa subsp. japonica GN=RACK1B PE=1 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 36/207 (17%)

Query: 83  IEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLR 142
           I +P    + D +     +G     S + +   S  +Q VV LS +G   ++G  DG LR
Sbjct: 47  ITNPSTAVATDPEAAPPEYGV----SYRRLTGHSHFVQDVV-LSSDGQFALSGSWDGELR 101

Query: 143 LWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTP 202
           LW     +       H+K++  V FS+   QIVS A+D    +WN+              
Sbjct: 102 LWDLATGRTTRRFVGHTKDVLSVAFSVDNRQIVSAARDNTIKLWNT-------------- 147

Query: 203 DNIKYLFKRCRYGLVED-------SPKRSRLFTLANPLAQNKRGISY---VQQWDVDSGR 252
                    C+Y +  D       +   S +    NP+A      S+   V+ W++ + +
Sbjct: 148 ------LGECKYTIGGDHGAGEGHTGWVSCVRFSPNPMAPTIVSGSWDRSVKVWNLTNCK 201

Query: 253 LRLAREMKES-LSALAVRDDGRFVAVG 278
           LR   E     ++A+AV  DG   A G
Sbjct: 202 LRTKLEGHNGYVNAVAVSPDGSLCASG 228

Component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q05B30|WDR91_XENTR WD repeat-containing protein 91 OS=Xenopus tropicalis GN=wdr91 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
            + NG+L+VTG  DG +RL+   + +  L  +AH  E+  VDFS     + SI +DGK  
Sbjct: 574 FNHNGNLLVTGAADGFIRLFDMQQHQCALSWKAHMGEVYSVDFSYDENAVYSIGEDGKFI 633

Query: 185 VWN-SKNGSLSKELKWNTPDNIKYLFKRCRY-GLVEDSPKRSRLFTL 229
            W+  K+G   K  +++ P +    F    Y G  +    R RLF  
Sbjct: 634 QWDIHKSG--QKVSEYSLPSDATGPFMLSGYSGYKQVQFPRGRLFAF 678

Xenopus tropicalis (taxid: 8364)

>sp|Q6TEN6|WDR91_DANRE WD repeat-containing protein 91 OS=Danio rerio GN=wdr91 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
            + NG+L+VTG  DG +RL+   + +  L  +AH  E+  V+FS     + SI +DGK  
Sbjct: 547 FNHNGNLLVTGAADGIIRLFDMQRYESALSWKAHDGEVYSVEFSYDENTVFSIGEDGKFV 606

Query: 185 VWN 187
            WN
Sbjct: 607 QWN 609

Danio rerio (taxid: 7955)

>sp|Q39221|STLP2_ARATH SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 22/180 (12%)

Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
           Q  +  +  G ++  G  DG LR++ +P M  LL+       +  + FS SG+ +VS+  
Sbjct: 156 QLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLGG 215

Query: 180 DGKAFVWN----SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ 235
                VW+    +   SLSKE           +F  CR+ +  DS     L+  AN    
Sbjct: 216 P-VCRVWDVNASAAVASLSKEK--------DEMFASCRFSV--DSAGNEVLYIAAN---- 260

Query: 236 NKRGISYVQQWDVDSGRLRLAREMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
            +RG S +   D    + + ++ +K+ S+SA  V  DG+ +A+GT+  G V +  +  +Q
Sbjct: 261 TERGGSIITC-DTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTL-EGDVLILESTRMQ 318

Required for the formation or budding of transport vesicles from the ER.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
170038255	446	prolactin regulatory element-binding pro	0.962	0.641	0.476	2e-69
312377503	458	hypothetical protein AND_11171 [Anophele	0.959	0.622	0.461	4e-68
157133672	438	hypothetical protein AaeL_AAEL012841 [Ae	0.949	0.643	0.482	4e-68
158298936	452	AGAP009942-PA [Anopheles gambiae str. PE	0.956	0.628	0.464	4e-67
383864661	432	PREDICTED: prolactin regulatory element-	0.929	0.638	0.462	3e-66
340720619	432	PREDICTED: prolactin regulatory element-	0.932	0.641	0.467	2e-65
350401229	432	PREDICTED: prolactin regulatory element-	0.932	0.641	0.467	2e-65
195115517	446	GI13455 [Drosophila mojavensis] gi|19391	0.946	0.630	0.468	3e-65
380015724	432	PREDICTED: LOW QUALITY PROTEIN: prolacti	0.932	0.641	0.471	3e-65
16767954	445	GH07831p [Drosophila melanogaster]	0.966	0.644	0.459	4e-65

>gi|170038255|ref|XP_001846967.1| prolactin regulatory element-binding protein [Culex quinquefasciatus] gi|167881826|gb|EDS45209.1| prolactin regulatory element-binding protein [Culex quinquefasciatus]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/298 (47%), Positives = 193/298 (64%), Gaps = 12/298 (4%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNG-VVKSKESNNTADTIVRKRK--EK 57
           MN  V ++ K   ++AGQE+  Q+Y +    T  +G V+   +S  + D + RKRK    
Sbjct: 75  MNLAVKNDEKRTLLLAGQESHCQMYLVNPIITSTDGEVIGGGKSEGSVDGM-RKRKNVSY 133

Query: 58  DKENAKQKGGK-KEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGS 116
            + N +  GG+  E++  +GK+K+ + +  P+        K +RF  KT DS+QT F   
Sbjct: 134 QQSNGQAAGGQTPEQTKGQGKDKQRQQQSAPV-------RKQIRFEIKTGDSIQTDFTEL 186

Query: 117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVS 176
           E LQRVVR+S +G +M TGG DGHLRLW+FPKM     I AH+KEIDD+DFS   + +VS
Sbjct: 187 EPLQRVVRISPDGRIMATGGMDGHLRLWNFPKMTLRADISAHTKEIDDLDFSPDSKNVVS 246

Query: 177 IAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN 236
           IAKDG   +W+      S++L WN P+  +YL KRCRYG++E    + RLFTLANP A++
Sbjct: 247 IAKDGLGVIWSINPEKESRKLTWNPPEGTRYLLKRCRYGVIEGQKDKHRLFTLANPFAKS 306

Query: 237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
            +    +QQWD +SGRL    E+ ESL+ALAVRDDGRFVAVGTMF+GSV +YIAFSLQ
Sbjct: 307 GKAKGLLQQWDPESGRLSRVVEIDESLAALAVRDDGRFVAVGTMFSGSVSIYIAFSLQ 364

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377503|gb|EFR24317.1| hypothetical protein AND_11171 [Anopheles darlingi]

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 185/295 (62%), Gaps = 10/295 (3%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKE 60
           MNC V ++ K   ++AGQE+  Q+Y +       N ++   E   ++ T    + E   E
Sbjct: 75  MNCAVKTDEKRTLLMAGQESHCQMYLV-------NTIIDYGEQTGSSPTA--GKPELSTE 125

Query: 61  NA-KQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESL 119
              K++   +++SN++   + +K+             K +RF  KT DSVQT F  SE+L
Sbjct: 126 GLRKRRSISQQRSNQQPTEEGEKVGPKAPTEESGVPRKQIRFDIKTADSVQTDFTESEAL 185

Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
           QRVVR+S NG  M TGG DGHLR+WSFPK+     I AH+KEIDD+DFS   + IVSIAK
Sbjct: 186 QRVVRISPNGRFMATGGMDGHLRVWSFPKLTCTSDIGAHTKEIDDLDFSPDSKHIVSIAK 245

Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG 239
           DG   +W+  +    ++L W  P N +YL KRCRYG++E    R RLFTLANP A++ + 
Sbjct: 246 DGLGIIWSVGSEKEVRKLTWTPPANCRYLLKRCRYGVIEGQKDRCRLFTLANPFAKSGKA 305

Query: 240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
              +QQWD ++GRL    E+ ESL+ALAVRDDGRFVA+GTMF+GSV +YIAFSLQ
Sbjct: 306 KGLLQQWDPEAGRLTGVVEIDESLAALAVRDDGRFVAIGTMFSGSVSIYIAFSLQ 360

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133672|ref|XP_001662958.1| hypothetical protein AaeL_AAEL012841 [Aedes aegypti] gi|108870732|gb|EAT34957.1| AAEL012841-PA [Aedes aegypti]

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 142/294 (48%), Positives = 182/294 (61%), Gaps = 12/294 (4%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKE 60
           MNC   ++ K   +VAGQE+  Q+Y +    +  +G    +      +T+   RK K+  
Sbjct: 75  MNCATKNDEKRTLLVAGQESHCQMYLVNPIISSPDG----EYIGGKTETLDGLRKRKNVS 130

Query: 61  NAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQ 120
              Q  G+ +       + K   E+           K +RF  KT DSVQT F  +E LQ
Sbjct: 131 YQPQANGQVKSEGPAQADGKKGGEE--------RVRKVIRFEIKTSDSVQTDFTEAEPLQ 182

Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
           RVVR+S +G LM TGGTDGHLRLW+FPKM  L  I AH+KEIDD+DFS   + IVSIAKD
Sbjct: 183 RVVRISPHGRLMATGGTDGHLRLWNFPKMTMLSDIAAHTKEIDDLDFSPDSKYIVSIAKD 242

Query: 181 GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI 240
           G   +W+      S++L WN P+  +YLFKRCRYGLVE    + RLFTLANP A++ +  
Sbjct: 243 GLGVIWSINPDKESRKLTWNPPEGTRYLFKRCRYGLVEGHKDKHRLFTLANPFAKSGKAK 302

Query: 241 SYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
             +QQWD + GRL    E+ ESL+ALAVRDDGRFVAVGTMF+GSV +YIAFSLQ
Sbjct: 303 GLLQQWDPEVGRLTRVVEIDESLAALAVRDDGRFVAVGTMFSGSVSIYIAFSLQ 356

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298936|ref|XP_319071.3| AGAP009942-PA [Anopheles gambiae str. PEST] gi|157014127|gb|EAA14036.3| AGAP009942-PA [Anopheles gambiae str. PEST]

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 142/306 (46%), Positives = 187/306 (61%), Gaps = 22/306 (7%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKE 60
           MNC V ++ K   ++AGQE+  Q+Y +       N ++ S E + +A T   K    D E
Sbjct: 75  MNCAVKNDEKRTLLMAGQESHCQMYLV-------NTIIDSGEYSPSASTTGNK---PDSE 124

Query: 61  NA-KQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKE-----------KNLRFGFKTFDS 108
              K++   +++S             PP   + D+K+           K +RF  KT DS
Sbjct: 125 GLRKRRSISQQRSVPLNAAGATATTPPPPGVAGDAKKSDDGKQPTGNRKQIRFEIKTADS 184

Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS 168
           VQT F  +E LQRVVR+S NG LM TGG DGHLR+W+FPKM     I AH+KEIDD+DFS
Sbjct: 185 VQTDFTEAEPLQRVVRISPNGRLMATGGMDGHLRVWNFPKMTIASDIAAHTKEIDDLDFS 244

Query: 169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFT 228
              + +VSIAKDG   +W+      S++L W+ P N +YL KRCRYGLVE    + RLFT
Sbjct: 245 PDSKHVVSIAKDGLGVIWSINPDKESRKLVWSPPANCRYLMKRCRYGLVEGQKDKFRLFT 304

Query: 229 LANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY 288
           LANP A+  +    +QQWD D+GRL    E+ ESL+ALAVRDDGRFVA+GTMF+GSV +Y
Sbjct: 305 LANPFAKAGKAKGLLQQWDPDAGRLTGVVEIDESLAALAVRDDGRFVAIGTMFSGSVSIY 364

Query: 289 IAFSLQ 294
           IAFS+Q
Sbjct: 365 IAFSMQ 370

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864661|ref|XP_003707796.1| PREDICTED: prolactin regulatory element-binding protein-like [Megachile rotundata]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/296 (46%), Positives = 191/296 (64%), Gaps = 20/296 (6%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM-NG-VVKSKESNNTADTIVRKRKEKD 58
           MNC  H++GK  ++ AGQE+  QLY + ++   + NG +VK K+ N       RK  +K 
Sbjct: 74  MNCTAHNDGKRTWIAAGQESHCQLYNVNSKVVTVENGEIVKDKDGNGKEGLRHRKSSDKT 133

Query: 59  KENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSES 118
           +EN   K               ++IE+    NS + + K L+   K  DSVQT F+  E 
Sbjct: 134 EENVLSK---------------ERIEEIKDDNS-NIRSKKLQLIVKPADSVQTDFSQDEP 177

Query: 119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA 178
           LQR+VR+S NG  M TGGTDGH+RLW FP+++ L  ++AH+KEIDDVDFS  G  I SIA
Sbjct: 178 LQRIVRISLNGKFMATGGTDGHIRLWKFPQLQKLHDLDAHTKEIDDVDFSPDGSLIASIA 237

Query: 179 KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR 238
           KDGK F+WN  NGS  KEL W  P+ +KY++KRCR+  +E+   +++LFTL+N +    +
Sbjct: 238 KDGKTFLWNVNNGSKLKELTWTPPNGLKYMYKRCRFQKLEEDKSKTKLFTLSNAIV--GK 295

Query: 239 GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
             S++Q WD++SG +      KE+LSALAV DDG+FVAVGTMF+GSV ++IAFSL+
Sbjct: 296 NPSFLQMWDIESGSVIKTVPFKETLSALAVSDDGKFVAVGTMFSGSVDIFIAFSLR 351

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720619|ref|XP_003398731.1| PREDICTED: prolactin regulatory element-binding protein-like [Bombus terrestris]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/295 (46%), Positives = 194/295 (65%), Gaps = 18/295 (6%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM-NGVVKSKESNNTADTIVRKRKEKDK 59
           MNC  +++ K I++ AGQE+  QLY ++++   + NG V    S N+ + I R RK  DK
Sbjct: 74  MNCTTYNDQKRIWIAAGQESHCQLYDVSSKVVSVKNGEVVKGTSGNSKEGI-RHRKNIDK 132

Query: 60  ENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESL 119
                         E+    +++IE+    NS + K K L+   K  DSVQT F+  E L
Sbjct: 133 V-------------EETVMPEERIEEVKDDNS-NIKSKKLQLIVKPSDSVQTDFSEEEPL 178

Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
           QR+VR++ NG  MVTGGTDGH+RLW FP++  L  ++AH+KEIDD+DFS     I SIAK
Sbjct: 179 QRIVRINSNGKFMVTGGTDGHIRLWKFPQLHKLHDLDAHTKEIDDIDFSPDSTLIASIAK 238

Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG 239
           DGKAF+WN  NGS SK+L W+ P+ +KY++KRCR+  +E+   +++LF L+N +    + 
Sbjct: 239 DGKAFLWNVSNGSKSKDLTWSPPNGLKYMYKRCRFRKLEEDKSKTQLFMLSNAVV--GKN 296

Query: 240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
           IS++Q WDV+SG +      KE+LSALAV DDG+FVAVGTMF+GSV +YIAFSL+
Sbjct: 297 ISFLQMWDVESGSIVKMVPYKETLSALAVSDDGKFVAVGTMFSGSVDIYIAFSLR 351

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401229|ref|XP_003486091.1| PREDICTED: prolactin regulatory element-binding protein-like [Bombus impatiens]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/295 (46%), Positives = 194/295 (65%), Gaps = 18/295 (6%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM-NGVVKSKESNNTADTIVRKRKEKDK 59
           MNC  +++ K I++ AGQE+  QLY ++++   + NG V    S N+ + I R RK  DK
Sbjct: 74  MNCTTYNDQKRIWIAAGQESHCQLYDVSSKVVSVKNGEVVKGASGNSKEGI-RHRKNIDK 132

Query: 60  ENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESL 119
                         E+    +++IE+    NS + K K L+   K  DSVQT F+  E L
Sbjct: 133 V-------------EETVMPEERIEEVKDDNS-NIKSKKLQLIVKPADSVQTDFSKEEPL 178

Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
           QR+VR++ NG  MVTGGTDGH+RLW FP++  L  ++AH+KEIDD+DFS     I SIAK
Sbjct: 179 QRIVRINSNGKFMVTGGTDGHIRLWKFPQLHKLHDLDAHTKEIDDIDFSPDSTLIASIAK 238

Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG 239
           DGKAF+WN  NGS SK+L W+ P+ +KY++KRCR+  +E+   +++LF L+N +    + 
Sbjct: 239 DGKAFLWNVSNGSKSKDLTWSPPNGLKYMYKRCRFRKLEEDKSKAQLFMLSNAVV--GKN 296

Query: 240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
           IS++Q WDV+SG +      KE+LSALAV DDG+FVAVGTMF+GSV +YIAFSL+
Sbjct: 297 ISFLQMWDVESGSVVKMVPYKETLSALAVSDDGKFVAVGTMFSGSVDIYIAFSLR 351

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115517|ref|XP_002002303.1| GI13455 [Drosophila mojavensis] gi|193912878|gb|EDW11745.1| GI13455 [Drosophila mojavensis]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/303 (46%), Positives = 185/303 (61%), Gaps = 22/303 (7%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRK----E 56
           MN  V ++G+  Y+ AGQE   Q+Y +          ++S+E  +      R RK    E
Sbjct: 75  MNFAVRNSGRRAYLCAGQEAHCQMYYVQPR-------IESEEDED------RDRKPAPVE 121

Query: 57  KDKENAKQKGGKKEKSNEK---GKNKKDKIEDPPILNS-IDSKEKNLRFGFKTFDSVQTV 112
           +  EN  ++ G      E    G N + + +     N  +  K   LRF  +  D VQT 
Sbjct: 122 RPHENGVRQRGAAHSGVEALPNGHNNRQQNQSSGTSNQELLGKLHRLRFDIQAADVVQTD 181

Query: 113 FAGS-ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG 171
           F  S E LQRVVR+S NG LM TGGTDGHLR+WSFP++K +  + AH+KEIDD+DFS   
Sbjct: 182 FLKSAEPLQRVVRISGNGQLMATGGTDGHLRIWSFPQIKLIKQLAAHTKEIDDLDFSPDS 241

Query: 172 EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN 231
           + IVSI+KD +  VW+   G    +L+W TP+  KYLFKRCRYG VE      RLFT+AN
Sbjct: 242 KCIVSISKDAQGIVWDLSTGKQHYKLQWQTPEGAKYLFKRCRYGTVEAHKDNYRLFTIAN 301

Query: 232 PLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF 291
           PL +  +   Y+QQWD  SG+LR A  + ESL++LAVRDDGRFVAVGTMF+GSV +YIAF
Sbjct: 302 PLGKVGKQRGYLQQWDCTSGQLRAAVPIDESLASLAVRDDGRFVAVGTMFSGSVSMYIAF 361

Query: 292 SLQ 294
           SLQ
Sbjct: 362 SLQ 364

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015724|ref|XP_003691846.1| PREDICTED: LOW QUALITY PROTEIN: prolactin regulatory element-binding protein-like [Apis florea]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/295 (47%), Positives = 192/295 (65%), Gaps = 18/295 (6%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM-NGVVKSKESNNTADTIVRKRKEKDK 59
           MNC  ++N K I++ AGQE+  QLY ++++   + NG V    S+NT ++I R+RK  DK
Sbjct: 74  MNCTTYNNEKKIWIAAGQESHCQLYNVSSKVVTVKNGEVIKPASDNTKESI-RQRKNVDK 132

Query: 60  ENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESL 119
                         E+    +++IE+    NS + K K L+   K  DSVQT F+  E L
Sbjct: 133 -------------GEETYVPEERIEEIKDDNS-NIKSKKLQLIVKPLDSVQTDFSEVEPL 178

Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
           QR+VR+S NG  M TGGTDGH+RLW FP++  L  ++AH KEIDD+DF      I S+AK
Sbjct: 179 QRIVRISSNGKFMATGGTDGHVRLWKFPQLYKLNDLDAHLKEIDDIDFCPDSTLIASVAK 238

Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG 239
           DGKAFVWN  NGS  K+L W+ P+ +KY++KRCR+  +E+   + +LF L+N  A   + 
Sbjct: 239 DGKAFVWNVNNGSKFKDLXWSPPNGLKYMYKRCRFRKLEEEKSKIQLFMLSN--AVIGKN 296

Query: 240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
            S++Q WDV+SG +  A   KE+LSALAV DDG+FVAVGTMF+GSV +YIAFSL+
Sbjct: 297 TSFLQMWDVNSGNIVKAISYKETLSALAVSDDGKFVAVGTMFSGSVDIYIAFSLR 351

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16767954|gb|AAL28195.1| GH07831p [Drosophila melanogaster]

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 136/296 (45%), Positives = 180/296 (60%), Gaps = 9/296 (3%)

Query: 1   MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKE 60
           MN  V + G+  Y+ AGQE   Q+Y +          V+S+E  N     V   K   +E
Sbjct: 75  MNFAVRNGGRRGYLCAGQEAHCQMYYVQPR-------VQSEEDGNGNGVGVGDGKPAPEE 127

Query: 61  NAKQKGGKKEKSNEKGKNKKDKIEDPPILNS-IDSKEKNLRFGFKTFDSVQTVFA-GSES 118
              + G  ++++   G         PP+  + I  + + L F  +  D +QT F  G+E 
Sbjct: 128 RPHENGNVRQRNAHSGVEPVANGHRPPLSTADILRQFRRLHFDIQAADVIQTDFLKGAEP 187

Query: 119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA 178
           LQRVVR+S NG LM TGGTDG LR+W+FP+M     + AHSKEIDD+DFS   + I SI+
Sbjct: 188 LQRVVRISGNGRLMATGGTDGKLRVWTFPQMTLAAELAAHSKEIDDLDFSPDSKLIASIS 247

Query: 179 KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR 238
           KD +  VW+  +G L  +L+W TP+  KYLFKRCRYG VE      RLFT+ANPL +  +
Sbjct: 248 KDAQGLVWDLASGQLQHKLQWKTPEGAKYLFKRCRYGTVEAQKDNYRLFTIANPLGKVGK 307

Query: 239 GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
              ++Q WD  SG+LR A  + ESLS+LAVRDDGRFVAVGTMF+GSV +YIAFSLQ
Sbjct: 308 QRGFLQHWDCASGQLRQAVAIDESLSSLAVRDDGRFVAVGTMFSGSVSMYIAFSLQ 363

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
FB|FBgn0031779	445	CG9175 [Drosophila melanogaste	0.703	0.469	0.549	6.9e-59
UNIPROTKB|F1SED4	415	PREB "Uncharacterized protein"	0.663	0.474	0.365	2.4e-28
MGI|MGI:1355326	417	Preb "prolactin regulatory ele	0.626	0.446	0.385	3.5e-27
RGD|61929	417	Preb "prolactin regulatory ele	0.626	0.446	0.370	5.7e-27
UNIPROTKB|Q9HCU5	417	PREB "Prolactin regulatory ele	0.659	0.470	0.358	9.4e-27
UNIPROTKB|E2RBH1	418	PREB "Uncharacterized protein"	0.663	0.471	0.350	1.2e-26
UNIPROTKB|E1BL12	418	PREB "Uncharacterized protein"	0.663	0.471	0.355	4e-26
WB|WBGene00010496	425	sec-12 [Caenorhabditis elegans	0.656	0.458	0.327	1e-21
UNIPROTKB|B5MC98	359	PREB "Prolactin regulatory ele	0.390	0.323	0.322	1.1e-16
TAIR|locus:2159697	383	AT5G50550 "AT5G50550" [Arabido	0.545	0.422	0.288	2.1e-09

FB|FBgn0031779 CG9175 [Drosophila melanogaster (taxid:7227)]

 Score = 570 (205.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 116/211 (54%), Positives = 147/211 (69%)

Query:    86 PPILNS-IDSKEKNLRFGFKTFDSVQTVFA-GSESLQRVVRLSRNGDLMVTGGTDGHLRL 143
             PP+  + I  + + L F  +  D +QT F  G+E LQRVVR+S NG LM TGGTDG LR+
Sbjct:   153 PPLSTADILRQFRRLHFDIQAADVIQTDFLKGAEPLQRVVRISGNGRLMATGGTDGKLRV 212

Query:   144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPD 203
             W+FP+M     + AHSKEIDD+DFS   + I SI+KD +  VW+  +G L  +L+W TP+
Sbjct:   213 WTFPQMTLAAELAAHSKEIDDLDFSPDSKLIASISKDAQGLVWDLASGQLQHKLQWKTPE 272

Query:   204 NIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESL 263
               KYLFKRCRYG VE      RLFT+ANPL +  +   ++Q WD  SG+LR A  + ESL
Sbjct:   273 GAKYLFKRCRYGTVEAQKDNYRLFTIANPLGKVGKQRGFLQHWDCASGQLRQAVAIDESL 332

Query:   264 SALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
             S+LAVRDDGRFVAVGTMF+GSV +YIAFSLQ
Sbjct:   333 SSLAVRDDGRFVAVGTMFSGSVSMYIAFSLQ 363

GO:0005634 "nucleus" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0009306 "protein secretion" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|F1SED4 PREB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 76/208 (36%), Positives = 119/208 (57%)

Query:    93 DSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL 152
             ++ ++ L F  +   +VQT F+  + LQ+VVR + +  L+ TGGTDG++R+W  P ++ +
Sbjct:   132 ETHQEGLEFSVENLQAVQTDFS-PDPLQKVVRFNHDATLLATGGTDGYVRVWKVPTLEKV 190

Query:   153 LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--NTP--DNIKYL 208
             L   AH  EI+D+     G+ +V++ +D KA VW  +   L  +L W  N P   N  Y 
Sbjct:   191 LEFRAHEGEIEDLAVGPDGK-LVTVGRDLKASVW--QKDQLVTQLHWQENGPTFSNTPYR 247

Query:   209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-YVQQWDVDSGR-LRLAREMKESLSAL 266
             ++ CR+G V D P   RLFT+  P  + ++    Y+  WD  +   LR      E +S L
Sbjct:   248 YQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISCL 307

Query:   267 AVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
             +V + G F+ +GT+ TGSV +YIAFSLQ
Sbjct:   308 SVSESGTFLGLGTV-TGSVAIYIAFSLQ 334

GO:0005783 "endoplasmic reticulum" evidence=IEA

MGI|MGI:1355326 Preb "prolactin regulatory element binding" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 76/197 (38%), Positives = 113/197 (57%)

Query:   104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID 163
             K  ++VQT F+ +E LQ+VV  + +  L+ TGGTDGH+R+W  P ++ +L  +AH  EI 
Sbjct:   142 KNLEAVQTDFS-NEPLQKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVLEFKAHEGEIG 200

Query:   164 DVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--NTP--DNIKYLFKRCRYGLVED 219
             D+     G+ +V++  D KA VW  +   L  +L+W  N P   N  Y ++ CR+G V D
Sbjct:   201 DLTLGPDGK-LVTVGWDFKASVW--QKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPD 257

Query:   220 SPKRSRLFTLANPLAQNKRGIS-YVQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAV 277
                  RLFT+  P  + ++    Y+  WD  +   LR      E +S L+V D G F+ +
Sbjct:   258 QLGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGL 317

Query:   278 GTMFTGSVFVYIAFSLQ 294
             GT+ TGSV +YIAFSLQ
Sbjct:   318 GTV-TGSVAIYIAFSLQ 333

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|61929 Preb "prolactin regulatory element binding" [Rattus norvegicus (taxid:10116)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 73/197 (37%), Positives = 111/197 (56%)

Query:   104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID 163
             K  ++VQT F+ +E LQ+VV  + +  L+ TGG+DGH+R+W  P ++ +L  +AH  EI 
Sbjct:   142 KNLEAVQTDFS-TEPLQKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVLEFKAHEGEIG 200

Query:   164 DVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWN----TPDNIKYLFKRCRYGLVED 219
             D+     G+ +V++  D KA VW  +   L  +L+W     T  N  Y ++ CR+G V D
Sbjct:   201 DLALGPDGK-LVTVGWDFKASVW--QKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPD 257

Query:   220 SPKRSRLFTLANPLAQNKRGIS-YVQQWDVDSGRLRLAREM-KESLSALAVRDDGRFVAV 277
              P   RLFT+  P  + ++    Y+  WD  +      R    E +S L V + G F+ +
Sbjct:   258 QPGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGL 317

Query:   278 GTMFTGSVFVYIAFSLQ 294
             GT+ TGSV +YIAFSLQ
Sbjct:   318 GTV-TGSVAIYIAFSLQ 333

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9HCU5 PREB "Prolactin regulatory element-binding protein" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 75/209 (35%), Positives = 119/209 (56%)

Query:    93 DSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL 152
             +++ + L    +   +VQT F+ S+ LQ+VV  + +  L+ TGGTDG++R+W  P ++ +
Sbjct:   131 ETQHEGLELRVENLQAVQTDFS-SDPLQKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKV 189

Query:   153 LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--NTP--DNIKYL 208
             L  +AH  EI+D+     G+ +V++ +D KA VW  +   L  +L W  N P   +  Y 
Sbjct:   190 LEFKAHEGEIEDLALGPDGK-LVTVGRDLKASVW--QKDQLVTQLHWQENGPTFSSTPYR 246

Query:   209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-YVQQWDVDSGRLRLAREM--KESLSA 265
             ++ CR+G V D P   RLFT+  P  + ++    Y+  WD  S  L L  +    E +S 
Sbjct:   247 YQACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWD-GSNFLPLRTKSCGHEVVSC 305

Query:   266 LAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
             L V + G F+ +GT+ TGSV +YIAFSLQ
Sbjct:   306 LDVSESGTFLGLGTV-TGSVAIYIAFSLQ 333

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E2RBH1 PREB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 73/208 (35%), Positives = 116/208 (55%)

Query:    93 DSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL 152
             ++ ++ +    +   +VQT F+  +  Q+VV  + +  L+ TGGTDG++R+W  P ++ +
Sbjct:   132 ETHQEGIELSVENLKAVQTDFS-PDPFQKVVCFNHDNTLLATGGTDGYVRIWKVPSLEKV 190

Query:   153 LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--NTP--DNIKYL 208
             L   AH  EI+D+     G+ +V++  D KA VW  +   L  +L W  N P   N  Y 
Sbjct:   191 LEFRAHEGEIEDLALGPDGK-LVTVGWDLKASVW--QKDQLVTQLHWQENGPTFSNTPYR 247

Query:   209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-YVQQWDVDSGR-LRLAREMKESLSAL 266
             ++ CR+G V D P R RLFT+  P  + ++    Y+  WD  +   LR      E +S L
Sbjct:   248 YQACRFGHVPDQPTRLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISCL 307

Query:   267 AVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
             +V + G F+ +GT+ TGSV +YIAFSLQ
Sbjct:   308 SVSESGTFLGLGTV-TGSVAIYIAFSLQ 334

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|E1BL12 PREB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 74/208 (35%), Positives = 116/208 (55%)

Query:    93 DSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL 152
             ++ ++ + F  +    VQT F+  + LQ+VV  + +  L+ TGGTDG +R+W  P ++ +
Sbjct:   132 ETHQEGVEFSVENLHEVQTDFS-RDPLQKVVCFNHDNTLLATGGTDGCVRVWKVPTLEKV 190

Query:   153 LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--NTP--DNIKYL 208
             L  +AH  EI+D+     G+ +V++  D KA VW  +   L  +L W  N P   N  Y 
Sbjct:   191 LEFKAHEGEIEDLALGPDGK-LVTVGWDLKASVW--QKDQLVTQLHWQENGPTFSNTPYR 247

Query:   209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-YVQQWDVDSGR-LRLAREMKESLSAL 266
             ++ CR+G V D P   RLFT+  P  + ++    Y+  WD  +   LR      E +S L
Sbjct:   248 YQACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRPCGHEVISCL 307

Query:   267 AVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
             +V + G F+ +GT+ TGSV +YIAFSLQ
Sbjct:   308 SVSESGTFLGLGTV-TGSVAIYIAFSLQ 334

GO:0005783 "endoplasmic reticulum" evidence=IEA

WB|WBGene00010496 sec-12 [Caenorhabditis elegans (taxid:6239)]

 Score = 238 (88.8 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 75/229 (32%), Positives = 123/229 (53%)

Query:    92 IDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWS---- 145
             ++ + + L F  +    V++ F  S S Q+ VR  ++  G +  TGG DGH+R+W+    
Sbjct:   117 LNEENECLSFEIQKVSQVRSDFHASNSYQKCVRFDKSSRGKIFATGGADGHIRIWNAQIV 176

Query:   146 F----PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT 201
             F       +P+L I+AH  ++DD+DFS   + I+S+  +G AF+W+++ G+   +L++  
Sbjct:   177 FRAENEDAQPILTIQAHKADVDDIDFSKDSKTIISVGAEG-AFIWSTQTGARLLDLQF-- 233

Query:   202 PDNIKYLFK----RCRYGLVEDSPKRSRLFTLA-NPLAQ-NKRGISYVQQWDVDSGRLRL 255
             P  I   FK    RC   L + S   + +F  A N +++ +K   S++  W  +S R  +
Sbjct:   234 PIEISRGFKMRSIRCT-PLGKAS--NNTVFVAAYNSISKGSKDQASFLSLWAFNSER-NV 289

Query:   256 AREMK-------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR 297
             AR +        +S+S+LAV D G F AVGTM +GSV V   F    CR
Sbjct:   290 ARPVVTKLLAKGQSISSLAVSDCGNFTAVGTM-SGSVLV---FDTHECR 334

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|B5MC98 PREB "Prolactin regulatory element-binding protein" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 40/124 (32%), Positives = 71/124 (57%)

Query:    93 DSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL 152
             +++ + L    +   +VQT F+ S+ LQ+VV  + +  L+ TGGTDG++R+W  P ++ +
Sbjct:   131 ETQHEGLELRVENLQAVQTDFS-SDPLQKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKV 189

Query:   153 LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--NTP--DNIKYL 208
             L  +AH  EI+D+     G+ +V++ +D KA VW  +   L  +L W  N P   +  Y 
Sbjct:   190 LEFKAHEGEIEDLALGPDGK-LVTVGRDLKASVW--QKDQLVTQLHWQENGPTFSSTPYR 246

Query:   209 FKRC 212
             ++ C
Sbjct:   247 YQAC 250

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2159697 AT5G50550 "AT5G50550" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 51/177 (28%), Positives = 86/177 (48%)

Query:   120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
             Q  +  +++G ++ TG  DG LR++ +P MK LL+       +  + FS SG+ +VS+  
Sbjct:   145 QLSLSFNQDGTVLATGAEDGTLRVFEWPSMKTLLNESKTHASVKSLTFSESGKFLVSLGA 204

Query:   180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG 239
                  VW+    +    L     +    +F  CR+ +  D+     L+  AN     +RG
Sbjct:   205 P-LCRVWDVNASAAIASLSKEKDE----MFASCRFSV--DNSGSEVLYVAAN----TQRG 253

Query:   240 ISYVQQWDVDSGRLRLAREMKE--SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
              S +  WD  S R R ++ +K   S+SA  V  DG+ +AVGT+  G V +  +  +Q
Sbjct:   254 GSIIT-WDTTSWRRRSSKLIKRNNSISAFNVSADGKLLAVGTL-EGDVLIIDSTKMQ 308

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	297
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-04
COG2706	346	COG2706, COG2706, 3-carboxymuconate cyclase [Carbo	7e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 21/87 (24%), Positives = 37/87 (42%)

Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG 171
              G       V  S +G L+ TG  DG +++W     + L  ++ H+  + DV  S  G
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 172 EQIVSIAKDGKAFVWNSKNGSLSKELK 198
             + S + D    +W+ + G   + L 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLT 90

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 18/76 (23%), Positives = 35/76 (46%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           V  S +G ++ +   D  +++W     K L  +  H+  ++ V FS  G  + S ++DG 
Sbjct: 99  VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Query: 183 AFVWNSKNGSLSKELK 198
             +W+ + G     L 
Sbjct: 159 IKLWDLRTGKCVATLT 174

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 21/76 (27%), Positives = 38/76 (50%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           V  S +G+ +++  +DG ++LW     K L  +  H   ++ V FS  G  + S ++DG 
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242

Query: 183 AFVWNSKNGSLSKELK 198
             VW+ + G   + L 
Sbjct: 243 IRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 23/88 (26%), Positives = 39/88 (44%)

Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
            T   G       V  S +G  + +   DG ++LW     K +  +  H+ E++ V FS 
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP 187

Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
            GE+++S + DG   +W+   G     L
Sbjct: 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 17/177 (9%)

Query: 103 FKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP-KMKPLLHIEAHSKE 161
             T   +++  +G      V   S +G L+ +G +DG +RLW        L  +  HS  
Sbjct: 228 LSTGKLLRSTLSGHSD-SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286

Query: 162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP 221
           +  V FS  G+ + S + DG   +W+ + G L   L     +             +  SP
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--------PVSSLSFSP 338

Query: 222 KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVG 278
             S L +     + +      ++ WD+ +G+     E   ++ +++   DGR V+ G
Sbjct: 339 DGSLLVS---GGSDDGT----IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 16/65 (24%), Positives = 34/65 (52%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           V  S +G L+ +G  DG +R+W     + +  +  H+  +  + +S  G+++ S + DG 
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284

Query: 183 AFVWN 187
             +W+
Sbjct: 285 IRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
           R V  S +G  + +G +D  +RLW     + +  +  H+  +  V FS  G  + S ++D
Sbjct: 55  RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114

Query: 181 GKAFVWNSKNGSLSKELK 198
               VW+ + G     L+
Sbjct: 115 KTIKVWDVETGKCLTTLR 132

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 8/193 (4%)

Query: 7   SNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNN----TADTIVRKRKEKDKENA 62
           S+   I +   + +S+ L  ++   + +  V  S +       ++D  VR     D E  
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW---DLETG 316

Query: 63  KQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRV 122
           K       K +E   +      D  +L S  S +  +R  +              S    
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL-WDLRTGKPLKTLEGHSNVLS 375

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           V  S +G ++ +G TDG +RLW       L +++ H+  +  +DFS  G+ + S + D  
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 183 AFVWNSKNGSLSK 195
             +W+ K    S 
Sbjct: 436 IRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 22/217 (10%)

Query: 78  NKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT 137
           N    +      + I              D    +  G E     +  S +G+L+++G +
Sbjct: 26  NSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSS 85

Query: 138 DGHLRLWSFPKMKPLLHI--EAHSKEIDDVDF-SISGEQIVSIAK--DGKAFVWNSKNGS 192
           DG ++LW     + L+      H   +  +   S  G  I+  +   DG   +W+     
Sbjct: 86  DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145

Query: 193 LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR 252
                     +++           +  SP    L +              ++ WD+ +G+
Sbjct: 146 KLIRTLEGHSESVT---------SLAFSPDGKLLAS-------GSSLDGTIKLWDLRTGK 189

Query: 253 -LRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY 288
            L       + +S+LA   DG  +       G++ ++
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 77  KNKKDKIEDPPILNSIDSKEKNLR-FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG 135
           K      +   IL +  S +  ++ +   T   +     G       +  S +G L+ +G
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 136 GT-DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE-QIVSIAKDGKAFVWNSKNGS- 192
            + DG ++LW     KPL  +  H+  +  + FS  G   I S + DG   +W+   G  
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 193 LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN 231
           L   L  ++   +              S    RL+ L +
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 7e-04
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 113 FAGSESLQRVVRLSRNGDLMVTGG-TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG 171
             G E     +  S +G L+V+GG  DG +RLW     KPL  +E HS  +  V FS  G
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDG 382

Query: 172 EQIVSIAKDGKAFVWNSKNGSLSKELK 198
             + S + DG   +W+   GSL + L 
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|225333 COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV 243
           F  ++K G LS         N  YL           +P +  L+ +  P  +     +Y 
Sbjct: 21  FNLDTKTGELSLLQLVAELGNPTYL---------AVNPDQRHLYVVNEPGEEG-GVAAY- 69

Query: 244 QQWDVDSGRLRLAREMKESLSA---LAVRDDGRFVAVGTMFTGSVFVY 288
            + D D GRL          S    ++V +DGRFV V    +GSV VY
Sbjct: 70  -RIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116

Length = 346

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 148 KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
             + L  ++ H+  +  V FS  G+ + S + DG   +W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
            K L  ++ H+  +  V FS  G  + S + DG   VW+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0263|consensus	707		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0279|consensus	315		100.0
KOG0286|consensus	343		100.0
KOG0279|consensus	315		100.0
KOG0315|consensus	311		99.98
KOG0266|consensus	456		99.98
KOG0263|consensus	707		99.98
KOG1446|consensus	311		99.97
KOG0273|consensus	524		99.97
KOG0283|consensus	712		99.97
KOG0291|consensus	893		99.97
KOG0273|consensus	524		99.97
KOG0284|consensus	464		99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0295|consensus	406		99.96
KOG0316|consensus	307		99.96
KOG0291|consensus	893		99.96
KOG0282|consensus	503		99.96
KOG0266|consensus	456		99.96
KOG0295|consensus	406		99.96
KOG0275|consensus	508		99.96
KOG0305|consensus	484		99.96
KOG0315|consensus	311		99.96
KOG0293|consensus	519		99.96
KOG0645|consensus	312		99.96
KOG0276|consensus	794		99.96
KOG0319|consensus	775		99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0265|consensus	338		99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0284|consensus	464		99.95
KOG0265|consensus	338		99.95
KOG0285|consensus	460		99.95
KOG0318|consensus	603		99.95
KOG0281|consensus	499		99.95
KOG0285|consensus	460		99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0640|consensus	430		99.95
KOG0316|consensus	307		99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0319|consensus	775		99.94
KOG0973|consensus	942		99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0276|consensus	794		99.94
KOG0296|consensus	399		99.94
KOG0281|consensus	499		99.94
KOG0310|consensus	487		99.94
KOG0296|consensus	399		99.94
KOG0289|consensus	506		99.94
KOG0278|consensus	334		99.94
KOG0282|consensus	503		99.93
KOG0277|consensus	311		99.93
KOG0274|consensus	537		99.93
KOG0313|consensus	423		99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0294|consensus	362		99.93
KOG0274|consensus	537		99.93
KOG0288|consensus	459		99.93
KOG0275|consensus	508		99.92
KOG2096|consensus	420		99.92
KOG0308|consensus	735		99.92
KOG1274|consensus	933		99.92
KOG0288|consensus	459		99.92
KOG0292|consensus	1202		99.92
KOG0306|consensus	888		99.92
KOG0645|consensus	312		99.92
KOG0643|consensus	327		99.92
KOG0318|consensus	603		99.92
KOG0313|consensus	423		99.92
KOG0277|consensus	311		99.91
KOG0283|consensus	712		99.91
KOG0641|consensus	350		99.91
KOG0973|consensus	942		99.9
KOG1407|consensus	313		99.9
KOG0267|consensus	825		99.9
KOG0292|consensus	1202		99.9
KOG0289|consensus	506		99.9
KOG0772|consensus	641		99.9
KOG0646|consensus	476		99.9
KOG0300|consensus	481		99.89
KOG0264|consensus	422		99.89
KOG0641|consensus	350		99.89
KOG0267|consensus	825		99.89
KOG0300|consensus	481		99.89
KOG0301|consensus	745		99.89
KOG0640|consensus	430		99.89
KOG0647|consensus	347		99.88
KOG0305|consensus	484		99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG0269|consensus	839		99.88
KOG0301|consensus	745		99.88
KOG1446|consensus	311		99.87
KOG0643|consensus	327		99.87
KOG4283|consensus	397		99.87
KOG1036|consensus	323		99.87
KOG0299|consensus	479		99.87
KOG0772|consensus	641		99.87
KOG0299|consensus	479		99.87
KOG2055|consensus	514		99.87
KOG0308|consensus	735		99.87
KOG1539|consensus	910		99.87
KOG1407|consensus	313		99.87
KOG0310|consensus	487		99.87
KOG0264|consensus	422		99.87
KOG0306|consensus	888		99.86
KOG0293|consensus	519		99.86
KOG0639|consensus	705		99.86
KOG0302|consensus	440		99.86
KOG1332|consensus	299		99.86
KOG0268|consensus	433		99.85
KOG1273|consensus	405		99.85
KOG0278|consensus	334		99.85
KOG0647|consensus	347		99.85
KOG1408|consensus	1080		99.85
KOG0268|consensus	433		99.84
KOG1274|consensus	933		99.83
KOG0269|consensus	839		99.83
KOG0294|consensus	362		99.83
KOG1009|consensus	434		99.83
KOG0270|consensus	463		99.83
KOG0303|consensus	472		99.83
KOG1332|consensus	299		99.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.82
KOG1273|consensus	405		99.82
KOG1034|consensus	385		99.82
KOG4283|consensus	397		99.81
KOG0302|consensus	440		99.8
KOG2096|consensus	420		99.8
KOG0303|consensus	472		99.8
KOG2048|consensus	691		99.79
KOG1408|consensus	1080		99.79
KOG2919|consensus	406		99.79
KOG0270|consensus	463		99.79
KOG0642|consensus	577		99.79
KOG0771|consensus	398		99.79
KOG0646|consensus	476		99.79
KOG1539|consensus	910		99.78
KOG0639|consensus	705		99.77
KOG2048|consensus	691		99.77
KOG0307|consensus	1049		99.77
KOG2445|consensus	361		99.77
KOG0321|consensus	720		99.76
KOG1063|consensus	764		99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG1445|consensus	1012		99.74
KOG1036|consensus	323		99.73
KOG4328|consensus	498		99.73
KOG4378|consensus	673		99.73
KOG2055|consensus	514		99.73
KOG0649|consensus	325		99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
KOG1007|consensus	370		99.71
KOG2106|consensus	626		99.71
KOG4378|consensus	673		99.71
KOG2106|consensus	626		99.71
KOG0644|consensus	1113		99.71
KOG4328|consensus	498		99.69
KOG2110|consensus	391		99.68
KOG0321|consensus	720		99.68
KOG2445|consensus	361		99.67
KOG0307|consensus	1049		99.67
KOG1063|consensus	764		99.67
KOG2110|consensus	391		99.67
KOG0649|consensus	325		99.67
KOG2919|consensus	406		99.67
KOG0290|consensus	364		99.66
KOG1034|consensus	385		99.66
KOG0322|consensus	323		99.65
KOG1445|consensus	1012		99.64
KOG1007|consensus	370		99.64
KOG1188|consensus	376		99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
KOG1009|consensus	434		99.63
KOG1524|consensus	737		99.62
KOG0771|consensus	398		99.62
KOG4227|consensus	609		99.6
KOG1523|consensus	361		99.6
KOG0650|consensus	733		99.6
KOG1310|consensus	758		99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
KOG1538|consensus	1081		99.59
KOG2394|consensus	636		99.58
KOG1188|consensus	376		99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.56
KOG1272|consensus	545		99.56
PRK01742	429	tolB translocation protein TolB; Provisional	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.54
KOG0642|consensus	577		99.53
KOG4227|consensus	609		99.53
KOG0290|consensus	364		99.52
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
KOG1523|consensus	361		99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.51
KOG1517|consensus	1387		99.51
PRK11028	330	6-phosphogluconolactonase; Provisional	99.5
KOG2394|consensus	636		99.5
KOG1310|consensus	758		99.5
KOG2139|consensus	445		99.5
KOG0650|consensus	733		99.49
KOG1538|consensus	1081		99.49
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.48
KOG2111|consensus	346		99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
KOG1272|consensus	545		99.47
KOG2321|consensus	703		99.46
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
KOG1524|consensus	737		99.45
PRK00178	430	tolB translocation protein TolB; Provisional	99.44
KOG3881|consensus	412		99.44
KOG1587|consensus	555		99.44
KOG0974|consensus	967		99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG1963|consensus	792		99.42
KOG1240|consensus	1431		99.41
KOG2321|consensus	703		99.39
KOG0322|consensus	323		99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.38
KOG1334|consensus	559		99.38
KOG0644|consensus	1113		99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
KOG2111|consensus	346		99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.33
KOG4547|consensus	541		99.3
KOG2139|consensus	445		99.28
KOG1587|consensus	555		99.27
KOG1517|consensus	1387		99.26
KOG1963|consensus	792		99.23
PRK00178	430	tolB translocation protein TolB; Provisional	99.23
KOG3881|consensus	412		99.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
KOG4547|consensus	541		99.22
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.21
COG4946	668	Uncharacterized protein related to the periplasmic	99.2
KOG1354|consensus	433		99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.19
KOG1240|consensus	1431		99.17
PRK04792	448	tolB translocation protein TolB; Provisional	99.16
PRK04043	419	tolB translocation protein TolB; Provisional	99.15
KOG4497|consensus	447		99.14
KOG4190|consensus	1034		99.11
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG2695|consensus	425		99.1
KOG4497|consensus	447		99.09
KOG0280|consensus	339		99.08
KOG3914|consensus	390		99.08
KOG0974|consensus	967		99.07
KOG2315|consensus	566		99.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.06
PRK04043	419	tolB translocation protein TolB; Provisional	99.05
KOG1064|consensus	2439		99.04
KOG2315|consensus	566		99.02
KOG1409|consensus	404		98.98
KOG1354|consensus	433		98.96
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.94
KOG4532|consensus	344		98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
KOG2314|consensus	698		98.91
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.9
KOG1064|consensus	2439		98.9
KOG0280|consensus	339		98.9
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.89
KOG1275|consensus	1118		98.89
KOG3914|consensus	390		98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.88
KOG2041|consensus	1189		98.88
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.84
KOG1832|consensus	1516		98.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.75
KOG2041|consensus	1189		98.74
KOG1409|consensus	404		98.72
KOG1912|consensus	1062		98.72
KOG2695|consensus	425		98.71
KOG4190|consensus	1034		98.71
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.7
KOG1334|consensus	559		98.7
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.67
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.67
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.66
KOG1645|consensus	463		98.65
KOG4532|consensus	344		98.61
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.61
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.61
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.57
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.51
KOG1912|consensus	1062		98.5
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.5
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.45
KOG4714|consensus	319		98.43
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.43
PRK02888	635	nitrous-oxide reductase; Validated	98.42
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.35
KOG0309|consensus	1081		98.34
COG3391	381	Uncharacterized conserved protein [Function unknow	98.33
KOG0882|consensus	558		98.32
KOG2314|consensus	698		98.31
KOG4714|consensus	319		98.25
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.25
KOG2066|consensus	846		98.23
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.2
KOG2066|consensus	846		98.19
KOG1920|consensus	1265		98.18
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.16
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.15
KOG0309|consensus	1081		98.14
KOG1008|consensus	783		98.14
PRK02888	635	nitrous-oxide reductase; Validated	98.13
KOG2395|consensus	644		98.08
KOG3617|consensus	1416		98.07
KOG4649|consensus	354		98.04
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
KOG0882|consensus	558		97.96
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.92
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.88
KOG4640|consensus	665		97.83
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.81
KOG1920|consensus	1265		97.8
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.76
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.68
COG3391	381	Uncharacterized conserved protein [Function unknow	97.66
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.65
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.65
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.63
KOG2114|consensus	933		97.62
PRK13616	591	lipoprotein LpqB; Provisional	97.61
KOG1832|consensus	1516		97.58
KOG1275|consensus	1118		97.56
KOG4649|consensus	354		97.54
KOG2114|consensus	933		97.53
KOG3621|consensus	726		97.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.48
KOG4640|consensus	665		97.47
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.44
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.41
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.34
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.31
KOG1008|consensus	783		97.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.28
KOG1645|consensus	463		97.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.26
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.25
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.24
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.22
KOG3621|consensus	726		97.18
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.17
KOG3617|consensus	1416		97.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.15
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.09
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.0
PRK13616	591	lipoprotein LpqB; Provisional	96.99
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.97
KOG2395|consensus	644		96.94
KOG2079|consensus	1206		96.9
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.88
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.76
KOG4499|consensus	310		96.74
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.74
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.71
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.67
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.67
KOG2079|consensus	1206		96.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.52
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.44
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.3
PRK10115	686	protease 2; Provisional	96.22
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.13
COG5167	776	VID27 Protein involved in vacuole import and degra	96.02
KOG2444|consensus	238		95.82
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.8
KOG2444|consensus	238		95.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.3
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.28
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.26
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.01
PHA02713	557	hypothetical protein; Provisional	94.97
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	94.95
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.78
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.69
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.52
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.49
KOG4499|consensus	310		94.46
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.4
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.38
KOG1520|consensus	376		94.32
KOG1916|consensus	1283		94.22
KOG4441|consensus	571		94.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.9
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.85
KOG4460|consensus	741		93.79
PRK13684	334	Ycf48-like protein; Provisional	93.76
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.73
PHA03098	534	kelch-like protein; Provisional	93.67
COG4590	733	ABC-type uncharacterized transport system, permeas	93.64
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.47
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.26
PRK10115	686	protease 2; Provisional	92.79
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.55
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.47
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.34
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.34
KOG3630|consensus	1405		91.56
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.55
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.11
KOG1897|consensus	1096		91.04
COG5167	776	VID27 Protein involved in vacuole import and degra	90.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.68
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.57
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.42
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.41
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.12
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.0
PHA03098	534	kelch-like protein; Provisional	89.97
KOG3630|consensus	1405		89.79
KOG4441|consensus	571		89.56
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.48
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.48
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.92
KOG2280|consensus	829		88.86
PHA02713	557	hypothetical protein; Provisional	88.44
KOG2377|consensus	657		88.3
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.9
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.64
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.02
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.18
PHA02790	480	Kelch-like protein; Provisional	85.81
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.56
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.53
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.51
KOG2247|consensus	615		84.46
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.14
KOG1900|consensus	1311		83.44
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	83.07
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	82.97
KOG4460|consensus	741		82.75
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	82.67
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.34
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	81.29
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	81.13
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	80.79

>KOG0286|consensus

Probab=100.00  E-value=7.2e-38  Score=243.12  Aligned_cols=236  Identities=21%  Similarity=0.276  Sum_probs=198.3

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      |+|+ |+|.|+++||||.|+.|.||++.....+......+.-                                .++.--
T Consensus       101 MtCA-~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l--------------------------------~gHtgy  147 (343)
T KOG0286|consen  101 MTCA-YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL--------------------------------AGHTGY  147 (343)
T ss_pred             EEEE-ECCCCCeEEecCcCceeEEEecccccccccceeeeee--------------------------------cCccce
Confidence            7888 8999999999999999999999865332211111000                                000000


Q ss_pred             ----CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEE
Q psy3337          81 ----DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLH  154 (297)
Q Consensus        81 ----~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~  154 (297)
                          .+..+.-  ..+++.|.+..+ |+++|+.+..+. ||.+.|.+++++| +++.+++|+-|+..+|||++.+.+++.
T Consensus       148 lScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt  224 (343)
T KOG0286|consen  148 LSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT  224 (343)
T ss_pred             eEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence                0111211  236888999999 999999999999 9999999999999 899999999999999999999999999


Q ss_pred             eccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      |.+|...|+++.|.|+|.-|++|+.|++.++||++..+.+..+....        ..+.+.+++||..|++|++      
T Consensus       225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~--------~~~gitSv~FS~SGRlLfa------  290 (343)
T KOG0286|consen  225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS--------IICGITSVAFSKSGRLLFA------  290 (343)
T ss_pred             ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc--------ccCCceeEEEcccccEEEe------
Confidence            99999999999999999999999999999999999999888886322        1234667999999999999      


Q ss_pred             cccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                        |..|..+.+||.-.++.+..+.+|+. |+++..+|||.-|++|+. |.+++||.
T Consensus       291 --gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-Ds~lriW~  343 (343)
T KOG0286|consen  291 --GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-DSTLRIWA  343 (343)
T ss_pred             --eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-hHheeecC
Confidence              55599999999999999999999988 999999999999999999 99999994

>KOG0272|consensus

Probab=100.00  E-value=2.9e-38  Score=256.07  Aligned_cols=242  Identities=16%  Similarity=0.162  Sum_probs=202.9

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      -|.|+.+++.|++|+.++.|+||++......            ....|+..+.....                     +.
T Consensus       180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~------------~~l~gH~~~v~~~~---------------------fh  226 (459)
T KOG0272|consen  180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLL------------QTLRGHTSRVGAAV---------------------FH  226 (459)
T ss_pred             eeEeecCCCeEEEeecCCceeEeecCCccee------------EEEeccccceeeEE---------------------Ec
Confidence            3458999999999999999999999876422            00111111110000                     00


Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                      ......-..+++.||++++ ...+...+..+. +|...|..++|+|+|++|+|++.|.+-++||++++..+....+|...
T Consensus       227 P~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~  305 (459)
T KOG0272|consen  227 PVDSDLNLATASADGTVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG  305 (459)
T ss_pred             cCCCccceeeeccCCceeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence            0001111568999999999 777778899998 99999999999999999999999999999999999998889999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      |.+++|.|||.++++|+.|..-+|||+++|.++..+.+|.    ..++      .|+|+|+|..|++        |+.|+
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~----k~I~------~V~fsPNGy~lAT--------gs~Dn  367 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI----KEIL------SVAFSPNGYHLAT--------GSSDN  367 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecccCcEEEEecccc----ccee------eEeECCCceEEee--------cCCCC
Confidence            9999999999999999999999999999999999999886    3333      4889999999999        66699


Q ss_pred             eEEEEeCCCCceEEEeccCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         242 YVQQWDVDSGRLRLAREMKES-LSALAVRD-DGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      +++|||++...++..+..|.. |+.++|+| .|.+|++++. |++++||...+.++++
T Consensus       368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy-D~t~kiWs~~~~~~~k  424 (459)
T KOG0272|consen  368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY-DNTVKIWSTRTWSPLK  424 (459)
T ss_pred             cEEEeeecccccceecccccchhhheEecccCCeEEEEccc-CcceeeecCCCcccch
Confidence            999999999999999999998 99999999 7889999999 9999999999988764

>KOG0263|consensus

Probab=100.00  E-value=7e-37  Score=265.20  Aligned_cols=230  Identities=17%  Similarity=0.257  Sum_probs=196.0

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      |+|+-|+++...||+|..|..+++|++..........                      .....+               
T Consensus       381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~----------------------~~~l~~---------------  423 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD----------------------ASDLSN---------------  423 (707)
T ss_pred             ceeEeecCCcchhhccccccEEEEEecchhhhccccc----------------------hhhhcc---------------
Confidence            6899999999988888999999999998643211000                      000001               


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                               ...++.|-.+.+ |........++. ||.++|..+.|+|+.++|++++.|++|++|.+.+..++..+++|.
T Consensus       424 ---------~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~  493 (707)
T KOG0263|consen  424 ---------IDTESADVDVDMLDDDSSGTSRTLY-GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL  493 (707)
T ss_pred             ---------ccccccchhhhhccccCCceeEEee-cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC
Confidence                     233444444555 666666667777 999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      .+|+++.|+|.|-+|||++.|++.++|......+++.+.+|..+          +.++.|+|+..|+++        |+.
T Consensus       494 ~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD----------V~cv~FHPNs~Y~aT--------GSs  555 (707)
T KOG0263|consen  494 APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD----------VDCVSFHPNSNYVAT--------GSS  555 (707)
T ss_pred             cceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc----------cceEEECCccccccc--------CCC
Confidence            99999999999999999999999999999888888888888643          344778999999999        777


Q ss_pred             CCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |.++++||+.+|..++.|.+|.. |.+++|||+|++|++|+. ||.|.+||+.+++++
T Consensus       556 D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e-d~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  556 DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE-DGLIKIWDLANGSLV  612 (707)
T ss_pred             CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc-CCcEEEEEcCCCcch
Confidence            99999999999999999999988 999999999999999999 999999999998765

>KOG0271|consensus

Probab=100.00  E-value=4.1e-36  Score=241.08  Aligned_cols=247  Identities=17%  Similarity=0.197  Sum_probs=197.4

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccc-cchhhhhccCCCcccccccCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKE-KDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      |+.|+++|..|++|+-|.++|+|++..+....            .-++++.=.- .+=.+..+.                
T Consensus       120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~------------t~KgH~~WVlcvawsPDgk~----------------  171 (480)
T KOG0271|consen  120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF------------TCKGHKNWVLCVAWSPDGKK----------------  171 (480)
T ss_pred             EEEecCCCceEEecCCCceEEeeccCCCCcce------------eecCCccEEEEEEECCCcch----------------
Confidence            67799999999999999999999998764321            0111110000 000000001                


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-----CCCEEEEEcCCCcEEEEeCCCCeeeEEe
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-----NGDLMVTGGTDGHLRLWSFPKMKPLLHI  155 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-----~g~~l~s~~~d~~i~iwd~~~~~~~~~~  155 (297)
                              ..+|+.||+|++ ++.+|+++-....+|...|++++|.|     ..++||+++.||.|+|||+..+.++..+
T Consensus       172 --------iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l  243 (480)
T KOG0271|consen  172 --------IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL  243 (480)
T ss_pred             --------hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence                    568999999999 89999877655559999999999976     5689999999999999999999999999


Q ss_pred             ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCC--------------------Cce---------
Q psy3337         156 EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPD--------------------NIK---------  206 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~--------------------~~~---------  206 (297)
                      .+|+.+|+|+.|-.+| ++++++.|++|++|+...|.+...+.+|..-                    +..         
T Consensus       244 sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  244 SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             ccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            9999999999997665 8999999999999999888877777665411                    000         


Q ss_pred             ---------------EEEEe-------------------------eeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         207 ---------------YLFKR-------------------------CRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       207 ---------------~~~~~-------------------------~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                                     ..++.                         ..++.+.|+||++++++++.        |..|++|
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF--------DkSVkLW  394 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF--------DKSVKLW  394 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec--------ccceeee
Confidence                           01111                         11356899999999999877        9999999


Q ss_pred             eCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         247 DVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |.++|+.+..|.+|-. |+.++|+.|.++|++|+. |.++++||+++.+.
T Consensus       395 ~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  395 DGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTKKL  443 (480)
T ss_pred             eCCCcchhhhhhhccceeEEEEeccCccEEEEcCC-CceEEEEEeeeeee
Confidence            9999999999999977 999999999999999999 99999999998664

>KOG0272|consensus

Probab=100.00  E-value=3.3e-36  Score=244.19  Aligned_cols=232  Identities=18%  Similarity=0.197  Sum_probs=197.1

Q ss_pred             cceeeeCC--CccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhccccc-chhhhhccCCCcccccccCCC
Q psy3337           2 NCDVHSNG--KNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEK-DKENAKQKGGKKEKSNEKGKN   78 (297)
Q Consensus         2 ~~~~~~~~--~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~   78 (297)
                      .|++|++.  +..+|+|+.|+++++|++..+..-            ....++..|... +..+.++.             
T Consensus       221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l------------~~l~gH~~RVs~VafHPsG~~-------------  275 (459)
T KOG0272|consen  221 GAAVFHPVDSDLNLATASADGTVKLWKLSQETPL------------QDLEGHLARVSRVAFHPSGKF-------------  275 (459)
T ss_pred             eeEEEccCCCccceeeeccCCceeeeccCCCcch------------hhhhcchhhheeeeecCCCce-------------
Confidence            35678876  568999999999999999885321            122333333322 22222222             


Q ss_pred             CCCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          79 KKDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        79 ~~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                                 ..+++.|.+.++ |+.++..+.... ||...|.+++|.|||.+++||+.|..-+|||++++.++..|.+
T Consensus       276 -----------L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  276 -----------LGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             -----------eeecccccchhhcccccchhhHhhc-ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence                       668999999999 999988776666 9999999999999999999999999999999999999999999


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC-CCeEEEEeccCcccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP-KRSRLFTLANPLAQN  236 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~~~  236 (297)
                      |..+|.+++|+|+|-.||||+.|++++|||++..+.+.++..|..          .+..|.|+| .|.+|++++.     
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n----------lVS~Vk~~p~~g~fL~Tasy-----  408 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN----------LVSQVKYSPQEGYFLVTASY-----  408 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc----------hhhheEecccCCeEEEEccc-----
Confidence            999999999999999999999999999999998888888887752          233477898 6888888655     


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                         |+++++|..++++++..+.+|+. |.++++++|+.+|++++. |.++++|.
T Consensus       409 ---D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~-DRT~KLW~  458 (459)
T KOG0272|consen  409 ---DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF-DRTIKLWR  458 (459)
T ss_pred             ---CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc-Cceeeecc
Confidence               99999999999999999999998 999999999999999999 99999995

>KOG0271|consensus

Probab=100.00  E-value=1.6e-34  Score=231.90  Aligned_cols=237  Identities=20%  Similarity=0.222  Sum_probs=190.8

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      |...+++|..||+|..|+.|++|+-....+..           ++.+|++|--..-.-+.             .+..+  
T Consensus       162 cvawsPDgk~iASG~~dg~I~lwdpktg~~~g-----------~~l~gH~K~It~Lawep-------------~hl~p--  215 (480)
T KOG0271|consen  162 CVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-----------RALRGHKKWITALAWEP-------------LHLVP--  215 (480)
T ss_pred             EEEECCCcchhhccccCCeEEEecCCCCCccc-----------ccccCcccceeEEeecc-------------cccCC--
Confidence            66689999999999999999999977765543           33333332221111111             11111  


Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC------------
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM------------  149 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~------------  149 (297)
                         +.-+..+++.|++++| |...++++..+. ||+.+|+|+.|--+| +|++|+.|++|++|+...|            
T Consensus       216 ---~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw  290 (480)
T KOG0271|consen  216 ---PCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW  290 (480)
T ss_pred             ---CccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence               1113678899999999 888889999998 999999999997665 8999999999999992221            


Q ss_pred             -------------------------------------------------------------------eeeEEeccccCCe
Q psy3337         150 -------------------------------------------------------------------KPLLHIEAHSKEI  162 (297)
Q Consensus       150 -------------------------------------------------------------------~~~~~~~~~~~~v  162 (297)
                                                                                         +++..+.+|...|
T Consensus       291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV  370 (480)
T KOG0271|consen  291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV  370 (480)
T ss_pred             eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence                                                                               2223345788889


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      +.+.||||++++|+++.|..|++||.++|+.+.+|.+|.    ..      +..++|+.|.+.|++        |+.|.+
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv----~~------VYqvawsaDsRLlVS--------~SkDsT  432 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV----AA------VYQVAWSADSRLLVS--------GSKDST  432 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc----ce------eEEEEeccCccEEEE--------cCCCce
Confidence            999999999999999999999999999999999999885    22      335889999999988        666999


Q ss_pred             EEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         243 VQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      |++||+++.++...+.+|.. |.++.|+|||..+++|+. |..+++|.
T Consensus       433 LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggk-dkv~~lw~  479 (480)
T KOG0271|consen  433 LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGK-DKVLRLWR  479 (480)
T ss_pred             EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCC-ceEEEeec
Confidence            99999999999999999877 999999999999999999 99999994

>KOG0279|consensus

Probab=100.00  E-value=1.1e-31  Score=207.56  Aligned_cols=185  Identities=21%  Similarity=0.245  Sum_probs=162.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc--cCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH--SKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~  166 (297)
                      ..+++.|+++++ |+.+|+..+.|. ||...|.+++|+||.+++++|+.|.+|++|++.. .+..++..+  .+.|.++.
T Consensus        78 alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvr  155 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVR  155 (315)
T ss_pred             EEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEE
Confidence            448999999999 999999999998 9999999999999999999999999999999764 445555444  78899999


Q ss_pred             EccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         167 FSIS--GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       167 ~sp~--~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      |+|+  ..+|++++.|++|++||+++-+..+.+.+|.    .+      ++.+++||||..+++        |..||.+.
T Consensus       156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~----~~------v~t~~vSpDGslcas--------Ggkdg~~~  217 (315)
T KOG0279|consen  156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS----GY------VNTVTVSPDGSLCAS--------GGKDGEAM  217 (315)
T ss_pred             EcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc----cc------EEEEEECCCCCEEec--------CCCCceEE
Confidence            9997  6789999999999999999988888887775    22      334788999998888        67799999


Q ss_pred             EEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         245 QWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +||++.++.+..+.+...|.+++|+|+..+|+.+.  +..|+|||+.+...+
T Consensus       218 LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at--~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  218 LWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT--ATSIKIWDLESKAVV  267 (315)
T ss_pred             EEEccCCceeEeccCCCeEeeEEecCCceeEeecc--CCceEEEeccchhhh
Confidence            99999999999999888899999999988888887  566999999987765

>KOG0286|consensus

Probab=100.00  E-value=8.2e-31  Score=203.94  Aligned_cols=239  Identities=13%  Similarity=0.125  Sum_probs=189.9

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      .|.=++.+++++++|.||+.+.||+.-.....-   ...-+        ..+-..-+-.+.                   
T Consensus        59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~--------s~WVMtCA~sPS-------------------  108 (343)
T KOG0286|consen   59 YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLP--------SSWVMTCAYSPS-------------------  108 (343)
T ss_pred             eeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecC--------ceeEEEEEECCC-------------------
Confidence            344578899999999999999999875432110   00000        000111111111                   


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCC------CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTF------DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH  154 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~  154 (297)
                           .-+-..|+-|+...| ++.+.      ...+.+. +|++++.|+.|-+|+ .|++++.|.++.+||+++++.+..
T Consensus       109 -----g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  109 -----GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQV  181 (343)
T ss_pred             -----CCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEE
Confidence                 111446777887777 66543      2334455 999999999999865 689999999999999999999999


Q ss_pred             eccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         155 IEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      |.+|.+.|.+++++| +++.|++|+-|+..+|||++.+...++|.+|+.+          ++.|.|.|+|..+++     
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD----------INsv~ffP~G~afat-----  246 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD----------INSVRFFPSGDAFAT-----  246 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc----------cceEEEccCCCeeee-----
Confidence            999999999999999 9999999999999999999999999999999744          446889999999998     


Q ss_pred             ccccCCCCeEEEEeCCCCceEEEeccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         234 AQNKRGISYVQQWDVDSGRLRLAREMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                         |++|+++++||++..+.+..+....   +|++++||..|++|++|.. |.++.+||.-.++.+
T Consensus       247 ---GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~-d~~c~vWDtlk~e~v  308 (343)
T KOG0286|consen  247 ---GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD-DFTCNVWDTLKGERV  308 (343)
T ss_pred             ---cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec-CCceeEeeccccceE
Confidence               7789999999999999998887643   3999999999999999999 999999998777653

>KOG0279|consensus

Probab=100.00  E-value=2e-30  Score=200.52  Aligned_cols=232  Identities=18%  Similarity=0.210  Sum_probs=180.2

Q ss_pred             eeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCC
Q psy3337           5 VHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIE   84 (297)
Q Consensus         5 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
                      +.+++|++.++|+.|+.+|||++......            +...|+.+-.-...-+....                   
T Consensus        70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t------------~~f~GH~~dVlsva~s~dn~-------------------  118 (315)
T KOG0279|consen   70 VLSSDGNFALSASWDGTLRLWDLATGEST------------RRFVGHTKDVLSVAFSTDNR-------------------  118 (315)
T ss_pred             EEccCCceEEeccccceEEEEEecCCcEE------------EEEEecCCceEEEEecCCCc-------------------
Confidence            45788999999999999999999874321            11111111111111010000                   


Q ss_pred             CCCCcCCCCCCCceEEEEeeCCCeEEEEe-cCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          85 DPPILNSIDSKEKNLRFGFKTFDSVQTVF-AGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                      .    ..+|+.|++|+++-.-+++..++. .++.+.|.|+.|+|+  ..+|++++.|++|++||+++.+....+.+|++.
T Consensus       119 q----ivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~  194 (315)
T KOG0279|consen  119 Q----IVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY  194 (315)
T ss_pred             e----eecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc
Confidence            0    458999999999656666776766 234889999999997  679999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      ++.+++||||.++++|+.||.+.+||++.++.+..+....           .+.+++|+|+...|+.+.         +.
T Consensus       195 v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~-----------~v~sl~fspnrywL~~at---------~~  254 (315)
T KOG0279|consen  195 VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD-----------IVNSLCFSPNRYWLCAAT---------AT  254 (315)
T ss_pred             EEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC-----------eEeeEEecCCceeEeecc---------CC
Confidence            9999999999999999999999999999999988776432           233578999987776654         45


Q ss_pred             eEEEEeCCCCceEEEecc----C-----CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         242 YVQQWDVDSGRLRLAREM----K-----ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~----~-----~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .|+|||+.++.++..+..    .     .. ..+++|++||..|++|.. |+.|++|.+..
T Consensus       255 sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-d~~irv~qv~~  314 (315)
T KOG0279|consen  255 SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-DNVIRVWQVAK  314 (315)
T ss_pred             ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec-CCcEEEEEeec
Confidence            699999999887766543    1     23 678899999999999999 99999999854

>KOG0315|consensus

Probab=99.98  E-value=3.3e-30  Score=196.49  Aligned_cols=192  Identities=19%  Similarity=0.302  Sum_probs=154.5

Q ss_pred             CCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          95 KEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        95 ~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      ....||+ |+.++.  ++.++. +|+..|+++.|..+|+++++|+.||+++|||++...+.+.++ |..+|+++..+|+.
T Consensus        59 ~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ  136 (311)
T KOG0315|consen   59 GNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ  136 (311)
T ss_pred             cCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc
Confidence            3457899 888765  577787 999999999999999999999999999999999977776666 77999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeccC----------CCCc----------eEEEE-------------------ee
Q psy3337         172 EQIVSIAKDGKAFVWNSKNGSLSKELKWNT----------PDNI----------KYLFK-------------------RC  212 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~----------~~~~----------~~~~~-------------------~~  212 (297)
                      ..|+++..+|.|++||+....+...+....          |++.          .+++.                   ..
T Consensus       137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            999999999999999997654332221110          1111          11111                   11


Q ss_pred             eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         213 RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       213 ~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      .+-...+|||+++|++++.        |.+++||+.++. +....+.+|.. +...+||.||+||++|+. |+.+++||+
T Consensus       217 ~il~C~lSPd~k~lat~ss--------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass-d~~~rlW~~  287 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSS--------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS-DHTARLWDL  287 (311)
T ss_pred             eEEEEEECCCCcEEEeecC--------CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC-CCceeeccc
Confidence            1223568999999999666        999999999986 66677888887 999999999999999999 999999999


Q ss_pred             CCceecC
Q psy3337         291 FSLQMCR  297 (297)
Q Consensus       291 ~~~~~~~  297 (297)
                      ..++.++
T Consensus       288 ~~~k~v~  294 (311)
T KOG0315|consen  288 SAGKEVR  294 (311)
T ss_pred             ccCceee
Confidence            9998653

>KOG0266|consensus

Probab=99.98  E-value=4e-30  Score=226.24  Aligned_cols=243  Identities=21%  Similarity=0.304  Sum_probs=191.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhh-hcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIV-RKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      .|+.|+++|+.++++.+|..+++|........   ..       +...++ +.-........                  
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~---~~-------~~l~~h~~~v~~~~fs~d------------------  214 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSN---LL-------RELSGHTRGVSDVAFSPD------------------  214 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccch---hh-------ccccccccceeeeEECCC------------------
Confidence            46679999999999999999999999433210   00       000000 00011111111                  


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-Ee-eCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GF-KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~-~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                            +-...+++.|++|++ ++ ..+..++++. +|...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|
T Consensus       215 ------~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h  287 (456)
T KOG0266|consen  215 ------GSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH  287 (456)
T ss_pred             ------CcEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence                  112568999999999 88 5567888998 99999999999999999999999999999999999999999999


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGS--LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      .+.|++++|++++++|++++.|+.|++||+.++.  ++..+..+...  .      .+..+.|+|++.++++...     
T Consensus       288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~------~~~~~~fsp~~~~ll~~~~-----  354 (456)
T KOG0266|consen  288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS--A------PVTSVQFSPNGKYLLSASL-----  354 (456)
T ss_pred             CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC--C------ceeEEEECCCCcEEEEecC-----
Confidence            9999999999999999999999999999999998  45555544311  1      2335789999999999554     


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC----eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES----LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~----v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                         |+.+++||+..+.+...+.+|..    +.+...++++.++++|+. |+.|++||+.++..+
T Consensus       355 ---d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~-d~~v~~~~~~s~~~~  414 (456)
T KOG0266|consen  355 ---DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE-DGSVYVWDSSSGGIL  414 (456)
T ss_pred             ---CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC-CceEEEEeCCccchh
Confidence               99999999999998888887654    445556789999999999 999999999987654

>KOG0263|consensus

Probab=99.98  E-value=3e-31  Score=230.38  Aligned_cols=183  Identities=20%  Similarity=0.272  Sum_probs=171.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+.++|.++|+ .+.+..++..+. ||..+|+.+.|+|-|-+|||++.|++-++|......+++.+.+|...|.|++|+
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FH  544 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH  544 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEEC
Confidence            458899999999 788888888888 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |+..|+++|+.|.+|++||+.+|..++.|.+|.          ..+..++|+|+|++|++        |+.|+.|.+||+
T Consensus       545 PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----------~~V~al~~Sp~Gr~LaS--------g~ed~~I~iWDl  606 (707)
T KOG0263|consen  545 PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----------GPVTALAFSPCGRYLAS--------GDEDGLIKIWDL  606 (707)
T ss_pred             CcccccccCCCCceEEEEEcCCCcEEEEecCCC----------CceEEEEEcCCCceEee--------cccCCcEEEEEc
Confidence            999999999999999999999999999999885          22345889999999999        666999999999


Q ss_pred             CCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         249 DSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       249 ~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .++.++..+.+|.. |.++.||.||..|++|+. |.+|++||+..
T Consensus       607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~-DnsV~lWD~~~  650 (707)
T KOG0263|consen  607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA-DNSVRLWDLTK  650 (707)
T ss_pred             CCCcchhhhhcccCceeEEEEecCCCEEEecCC-CCeEEEEEchh
Confidence            99999999999977 999999999999999999 99999999865

>KOG1446|consensus

Probab=99.97  E-value=1.1e-29  Score=199.84  Aligned_cols=244  Identities=13%  Similarity=0.137  Sum_probs=195.7

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|+.-|+++|..++++.+|..+|||++....+......++++-                                 +...
T Consensus        17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~---------------------------------~~~~   63 (311)
T KOG1446|consen   17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGV---------------------------------DLAC   63 (311)
T ss_pred             eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccc---------------------------------cEEE
Confidence            3555699999999999999999999999988877667776662                                 1222


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                      +.....-++..+...|.+||+ ++.+.+.++.+. ||...|..++.+|-+..+++++.|++|++||++..++...+... 
T Consensus        64 Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-  141 (311)
T KOG1446|consen   64 FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-  141 (311)
T ss_pred             EecCCceEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-
Confidence            223333334455667899999 999999999999 99999999999999999999999999999999988876666433 


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG--SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                       .-..++|.|+|-++|++.....|+|||++.-  .+..++....+.       .+++..+.|+|||++++....      
T Consensus       142 -~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~-------~~ew~~l~FS~dGK~iLlsT~------  207 (311)
T KOG1446|consen  142 -GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND-------EAEWTDLEFSPDGKSILLSTN------  207 (311)
T ss_pred             -CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC-------ccceeeeEEcCCCCEEEEEeC------
Confidence             3345899999999999988889999999853  344444332221       244567999999999998555      


Q ss_pred             CCCCeEEEEeCCCCceEEEeccCCC----eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         238 RGISYVQQWDVDSGRLRLAREMKES----LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~~~~~~----v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                        .+.+++.|.-+|.....+..+..    ....+|+||++++++|+. ||+|.+|++++++++
T Consensus       208 --~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~-dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  208 --ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD-DGTIHVWNLETGKKV  267 (311)
T ss_pred             --CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC-CCcEEEEEcCCCcEe
Confidence              89999999999999888877543    458899999999999999 999999999998864

>KOG0273|consensus

Probab=99.97  E-value=9.9e-30  Score=209.26  Aligned_cols=190  Identities=20%  Similarity=0.360  Sum_probs=161.8

Q ss_pred             CcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-----------------
Q psy3337          88 ILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-----------------  150 (297)
Q Consensus        88 ~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-----------------  150 (297)
                      -+...|+.||.++++-.+|..+.++. .|.++|.++.|+.+|++|++++.|+++.+||..+++                 
T Consensus       248 ~~LatG~~~G~~riw~~~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNKDGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             CeEEEeecCcEEEEEecCchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence            34568999999999888899999998 999999999999999999999999999999953332                 


Q ss_pred             ------------------------eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCce
Q psy3337         151 ------------------------PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIK  206 (297)
Q Consensus       151 ------------------------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~  206 (297)
                                              ++.++.+|.++|.++.|+|.+.+|++++.|++++||.+........+..|...   
T Consensus       327 ~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske---  403 (524)
T KOG0273|consen  327 QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE---  403 (524)
T ss_pred             ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc---
Confidence                                    33455689999999999999999999999999999999888888888877622   


Q ss_pred             EEEEeeeeeeeeeCCCC---------eEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEE
Q psy3337         207 YLFKRCRYGLVEDSPKR---------SRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVA  276 (297)
Q Consensus       207 ~~~~~~~~~~~~~s~~~---------~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~  276 (297)
                       ++      .+.|+|.|         ..+++++.        |++|++||+..+.++..|..|.. |++++|+|+|++++
T Consensus       404 -i~------t~~wsp~g~v~~n~~~~~~l~sas~--------dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  404 -IY------TIKWSPTGPVTSNPNMNLMLASASF--------DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             -ee------eEeecCCCCccCCCcCCceEEEeec--------CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence             22      24455543         35666554        99999999999999999977766 99999999999999


Q ss_pred             EEecCCCeEEEEEeCCceecC
Q psy3337         277 VGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      +|+. ||.|.+|+.++++.++
T Consensus       469 sGs~-dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  469 SGSL-DGCVHIWSTKTGKLVK  488 (524)
T ss_pred             ecCC-CCeeEeccccchheeE
Confidence            9999 9999999999988754

>KOG0283|consensus

Probab=99.97  E-value=4.3e-29  Score=218.56  Aligned_cols=187  Identities=16%  Similarity=0.205  Sum_probs=149.0

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      +.+.|+|+|| ++...+++..|  .|.+.|+|++|+| |.++|++|+-|+.|+||++...+.+.-... ..-|++++|.|
T Consensus       385 SSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~P  461 (712)
T KOG0283|consen  385 SSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSP  461 (712)
T ss_pred             eccccccEEeecCCCcceeeEE--ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEecc
Confidence            7889999999 78888899888  7999999999999 779999999999999999987776554443 47899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCCCeEEEEeC
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      ||++.+.|+.+|.+++|+...-+.......+......  ....++..+.|.|... .|+..++        |..|+|+|.
T Consensus       462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk--~~~~rITG~Q~~p~~~~~vLVTSn--------DSrIRI~d~  531 (712)
T KOG0283|consen  462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK--KQGKRITGLQFFPGDPDEVLVTSN--------DSRIRIYDG  531 (712)
T ss_pred             CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc--ccCceeeeeEecCCCCCeEEEecC--------CCceEEEec
Confidence            9999999999999999999877766655443321111  1112455566665433 3444343        999999999


Q ss_pred             CCCceEEEeccCCC---eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         249 DSGRLRLAREMKES---LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       249 ~~~~~~~~~~~~~~---v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++..++..|.+...   -....|+.||++|+++++ |..|++|+...
T Consensus       532 ~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se-Ds~VYiW~~~~  577 (712)
T KOG0283|consen  532 RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE-DSWVYIWKNDS  577 (712)
T ss_pred             cchhhhhhhcccccCCcceeeeEccCCCEEEEeec-CceEEEEeCCC
Confidence            99888888887533   466789999999999999 99999999744

>KOG0291|consensus

Probab=99.97  E-value=6.1e-29  Score=215.01  Aligned_cols=240  Identities=20%  Similarity=0.263  Sum_probs=189.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|+.+.+.|++|-..+...||.+.....- |.-+...           ++-....-+...                 
T Consensus       269 taa~fH~~t~~lvvgFssG~f~LyelP~f~li-h~LSis~-----------~~I~t~~~N~tG-----------------  319 (893)
T KOG0291|consen  269 TAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI-HSLSISD-----------QKILTVSFNSTG-----------------  319 (893)
T ss_pred             eeeeccCCceEEEEEecCCeeEEEecCCceEE-EEeeccc-----------ceeeEEEecccC-----------------
Confidence            57789999999999999999999988653321 0000000           000000000000                 


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                           -.+...++.=+.+-+ +..+...+...+ +|...+++++++|||+++|+|+.||+|+|||..++-++.+|..|+.
T Consensus       320 -----DWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts  393 (893)
T KOG0291|consen  320 -----DWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS  393 (893)
T ss_pred             -----CEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence                 011123344456777 666666666666 9999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|+.+.|+..++.+++++.||+|+.||+...+..+++..+.|.         +|.+++..|.|..+.+.+.       +.
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~---------QfscvavD~sGelV~AG~~-------d~  457 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI---------QFSCVAVDPSGELVCAGAQ-------DS  457 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce---------eeeEEEEcCCCCEEEeecc-------ce
Confidence            9999999999999999999999999999999999999877643         4556888999988877443       34


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      -.|.+|++.+|+++..+.+|+. |.+++|+|+|..|++++. |.+|++||+...
T Consensus       458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s  510 (893)
T KOG0291|consen  458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSS  510 (893)
T ss_pred             EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeecc
Confidence            5899999999999999999988 999999999999999999 999999998653

>KOG0273|consensus

Probab=99.97  E-value=2.3e-28  Score=201.23  Aligned_cols=229  Identities=19%  Similarity=0.246  Sum_probs=191.5

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC-CCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD-KIE   84 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   84 (297)
                      .+..|.||+++|-|++..||+.......-+.+....++                                  ...+ ...
T Consensus       284 Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~----------------------------------lDVdW~~~  329 (524)
T KOG0273|consen  284 WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA----------------------------------LDVDWQSN  329 (524)
T ss_pred             EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc----------------------------------cceEEecC
Confidence            35678999999999999999996654332111111110                                  0000 000


Q ss_pred             CCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCee
Q psy3337          85 DPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID  163 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  163 (297)
                      +.   ..+.+.|+.|+| .+....++.++. ||.+.|.++.|+|.|.+|++++.|++++||..........|.+|...|.
T Consensus       330 ~~---F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~  405 (524)
T KOG0273|consen  330 DE---FATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY  405 (524)
T ss_pred             ce---EeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcccee
Confidence            00   457788999999 888888999999 9999999999999999999999999999999988889999999999999


Q ss_pred             EEEEccCC---------CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         164 DVDFSISG---------EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       164 ~~~~sp~~---------~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      .+.|+|.+         ..+++++.|++|++||+..+.++++|..|.    ..      +..++|+|+|+++++      
T Consensus       406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~----~p------VysvafS~~g~ylAs------  469 (524)
T KOG0273|consen  406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ----EP------VYSVAFSPNGRYLAS------  469 (524)
T ss_pred             eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC----Cc------eEEEEecCCCcEEEe------
Confidence            99999964         479999999999999999999999997775    22      335889999999999      


Q ss_pred             cccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                        |+.|+.|.+|+.++++.+..+.+...|..++|+.+|.+|..+-. |+.+++.|++
T Consensus       470 --Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s-d~~vcvldlr  523 (524)
T KOG0273|consen  470 --GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS-DGSVCVLDLR  523 (524)
T ss_pred             --cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec-CCCceEEEec
Confidence              67799999999999999999999888999999999999999998 9999999986

>KOG0284|consensus

Probab=99.96  E-value=7.1e-30  Score=206.73  Aligned_cols=237  Identities=16%  Similarity=0.190  Sum_probs=190.9

Q ss_pred             eeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCC
Q psy3337           5 VHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIE   84 (297)
Q Consensus         5 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
                      ...++|+.|++|.+-+.+.||+......+...+.-+.+        .|                           ..+-+
T Consensus       103 ~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~--------Vr---------------------------~m~ws  147 (464)
T KOG0284|consen  103 RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP--------VR---------------------------TMKWS  147 (464)
T ss_pred             EEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc--------ce---------------------------eEEEc
Confidence            36788999999999999999998665433211110000        00                           00001


Q ss_pred             CCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          85 DPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      .......++..++.|++|-.+...++.+...|...|++++|+|+...|++|+.||+|+|||....+....+.+|.-.|.+
T Consensus       148 ~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks  227 (464)
T KOG0284|consen  148 HNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS  227 (464)
T ss_pred             cCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence            11112458889999999666666677777456689999999999999999999999999999988888899999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      ++|+|.-.++++++.|..|++||.+++.++.++..|.    ..+.      .+.|+|++.+|++        ++.|..++
T Consensus       228 vdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK----ntVl------~~~f~~n~N~Llt--------~skD~~~k  289 (464)
T KOG0284|consen  228 VDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK----NTVL------AVKFNPNGNWLLT--------GSKDQSCK  289 (464)
T ss_pred             eccCCccceeEEccCCceeEeecCCCcchhhhhhhcc----ceEE------EEEEcCCCCeeEE--------ccCCceEE
Confidence            9999999999999999999999999999999998875    2222      3779999999999        55599999


Q ss_pred             EEeCCCCceEEEeccCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         245 QWDVDSGRLRLAREMKES-LSALAVRD-DGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ++|+++.+.++.+++|.. |+++.|+| ...+|.+|+. ||.|..|.+...++
T Consensus       290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~-Dgsvvh~~v~~~~p  341 (464)
T KOG0284|consen  290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS-DGSVVHWVVGLEEP  341 (464)
T ss_pred             EEehhHhHHHHHhhcchhhheeeccccccccceeeccC-CCceEEEecccccc
Confidence            999999999999999988 99999999 5677888888 99999999874443

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.6e-27  Score=209.50  Aligned_cols=174  Identities=14%  Similarity=0.289  Sum_probs=141.8

Q ss_pred             EEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      +..+. +|...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++|++||
T Consensus       118 l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD  196 (493)
T PTZ00421        118 IVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID  196 (493)
T ss_pred             eEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEE
Confidence            45666 999999999999985 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-ceEEEeccCC--CeE
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-RLRLAREMKE--SLS  264 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~~~--~v~  264 (297)
                      +++++.+..+..|....         ...+.|.+++..+++++.    +++.|+.|++||+++. +++.....+.  .+.
T Consensus       197 ~rsg~~v~tl~~H~~~~---------~~~~~w~~~~~~ivt~G~----s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~  263 (493)
T PTZ00421        197 PRDGTIVSSVEAHASAK---------SQRCLWAKRKDLIITLGC----SKSQQRQIMLWDTRKMASPYSTVDLDQSSALF  263 (493)
T ss_pred             CCCCcEEEEEecCCCCc---------ceEEEEcCCCCeEEEEec----CCCCCCeEEEEeCCCCCCceeEeccCCCCceE
Confidence            99999888887775221         112446788777777653    2456899999999874 3444443332  266


Q ss_pred             EEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         265 ALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       265 ~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ...|++++.+|++++..|+.|++||+.+++.+
T Consensus       264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        264 IPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             EEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            77899999999887732999999999987653

>KOG0295|consensus

Probab=99.96  E-value=6.4e-29  Score=198.58  Aligned_cols=251  Identities=14%  Similarity=0.161  Sum_probs=188.3

Q ss_pred             eeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCC
Q psy3337           4 DVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKI   83 (297)
Q Consensus         4 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
                      .+|++.--.++.|..|.++++|+.-....+            +..+|+..-....                       ..
T Consensus       114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e------------~~LrGHt~sv~di-----------------------~~  158 (406)
T KOG0295|consen  114 VIFHPSEALVVSASEDATIKVFDTETGELE------------RSLRGHTDSVFDI-----------------------SF  158 (406)
T ss_pred             eeeccCceEEEEecCCceEEEEEccchhhh------------hhhhccccceeEE-----------------------EE
Confidence            457777677788889999999998776543            1111111110000                       00


Q ss_pred             CCCCCcCCCCCCCceEEE-EeeC-CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          84 EDPPILNSIDSKEKNLRF-GFKT-FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        84 ~~~~~l~~~~~~d~~i~~-~~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                      .....+..+.+.|-.+.+ +..+ .++++.+. +|...|.++.|-|.|.++++++.|.+|++|++.++-++.+|.+|...
T Consensus       159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew  237 (406)
T KOG0295|consen  159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW  237 (406)
T ss_pred             ecCccEEEecCCccchhheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh
Confidence            011122456677777777 5554 45666777 99999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe---ccCcccccC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL---ANPLAQNKR  238 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~~~~~~g~  238 (297)
                      |..++.+.||.++++++.|.+|++|-+.++++...+..|+.......+..     ..+.|+-. -++.   +.+++.+++
T Consensus       238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap-----~~~~~~i~-~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAP-----ESSYPSIS-EATGSTNGGQVLGSGS  311 (406)
T ss_pred             EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecc-----cccCcchh-hccCCCCCccEEEeec
Confidence            99999999999999999999999999999988888887763321221111     11111100 0000   012344578


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      .|++|++||+.++.++.++.+|.. |..++|+|.|+||+++.+ |+++++||++++++++
T Consensus       312 rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-Dktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  312 RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-DKTLRVWDLKNLQCMK  370 (406)
T ss_pred             ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-CCcEEEEEeccceeee
Confidence            899999999999999999999988 999999999999999999 9999999999988764

>KOG0316|consensus

Probab=99.96  E-value=2.8e-28  Score=184.60  Aligned_cols=233  Identities=15%  Similarity=0.186  Sum_probs=186.3

Q ss_pred             eeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCC
Q psy3337           4 DVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKI   83 (297)
Q Consensus         4 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
                      +-|.-+|+|.+++|.|.+++||+......-.  ...--+       ....--+....+.  +                  
T Consensus        23 vryN~dGnY~ltcGsdrtvrLWNp~rg~lik--tYsghG-------~EVlD~~~s~Dns--k------------------   73 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--TYSGHG-------HEVLDAALSSDNS--K------------------   73 (307)
T ss_pred             EEEccCCCEEEEcCCCceEEeecccccceee--eecCCC-------ceeeecccccccc--c------------------
Confidence            3477799999999999999999987655321  000000       0000000011111  1                  


Q ss_pred             CCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC--CeeeEEeccccC
Q psy3337          84 EDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK--MKPLLHIEAHSK  160 (297)
Q Consensus        84 ~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~  160 (297)
                            ..+++.|+.+.+ |..+|+.++.+. +|.+.|+.+.|+.+...+++|+.|.++++||-++  .++++.+....+
T Consensus        74 ------f~s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   74 ------FASCGGDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             ------cccCCCCceEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence                  567888999999 999999999999 9999999999999999999999999999999874  568888988889


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|.++..+  +..+++|+.||+++.||++.|.....+.+++            ++++.|+++++.++.        ++.+
T Consensus       147 ~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~p------------it~vs~s~d~nc~La--------~~l~  204 (307)
T KOG0316|consen  147 GVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHP------------ITSVSFSKDGNCSLA--------SSLD  204 (307)
T ss_pred             ceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCc------------ceeEEecCCCCEEEE--------eecc
Confidence            99999985  5689999999999999999998776665542            445889999999988        5559


Q ss_pred             CeEEEEeCCCCceEEEeccCCC---eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES---LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ++|++.|-.+|+++..+.+|..   -...+++.....+++|++ ||.|++||+.....
T Consensus       205 stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE-DG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  205 STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE-DGKVYFWDLVDETQ  261 (307)
T ss_pred             ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC-CceEEEEEecccee
Confidence            9999999999999999999865   455677778889999999 99999999977654

>KOG0291|consensus

Probab=99.96  E-value=7.4e-28  Score=208.36  Aligned_cols=240  Identities=14%  Similarity=0.202  Sum_probs=184.6

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEE--eeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEF--TQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKN   78 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   78 (297)
                      |+|..++++|.++|+|+.|+.|+||+.++..  -......       ..-.+..--+                       
T Consensus       353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt-------s~Vt~v~f~~-----------------------  402 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT-------SGVTAVQFTA-----------------------  402 (893)
T ss_pred             eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC-------CceEEEEEEe-----------------------
Confidence            7899999999999999999999999999843  2220000       0000000000                       


Q ss_pred             CCCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC-cEEEEeCCCCeeeEEec
Q psy3337          79 KKDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG-HLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        79 ~~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~-~i~iwd~~~~~~~~~~~  156 (297)
                             ......+.+-||+|+. |+..++..+++.....-...|++..|.|..++.|+.|. .|++|++++|+.+..+.
T Consensus       403 -------~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  403 -------RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             -------cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence                   0001447889999999 99999999999833344567999999999999999886 69999999999999999


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      +|.++|.+++|+|++..|++++.|.+|++||+-.. ..+.++....           .+..++|.|+|+.|+++..    
T Consensus       476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-----------dvl~vsfrPdG~elaVaTl----  540 (893)
T KOG0291|consen  476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS-----------DVLAVSFRPDGKELAVATL----  540 (893)
T ss_pred             CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc-----------ceeEEEEcCCCCeEEEEEe----
Confidence            99999999999999999999999999999998543 2333333221           1224789999999999776    


Q ss_pred             ccCCCCeEEEEeCCCCceEEEecc--------------------C-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         236 NKRGISYVQQWDVDSGRLRLAREM--------------------K-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~~~~~~~~~--------------------~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                          ||.|.+||...+..+..+.+                    . ...+.+++|+||..|++|+. ...|++||+.++-
T Consensus       541 ----dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~-sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  541 ----DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE-SNSICIYDVPEGV  615 (893)
T ss_pred             ----cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC-cccEEEEECchhh
Confidence                99999999987554432221                    1 22789999999999999999 9999999999876


Q ss_pred             ecC
Q psy3337         295 MCR  297 (297)
Q Consensus       295 ~~~  297 (297)
                      .+|
T Consensus       616 llk  618 (893)
T KOG0291|consen  616 LLK  618 (893)
T ss_pred             eee
Confidence            654

>KOG0282|consensus

Probab=99.96  E-value=6.6e-29  Score=205.03  Aligned_cols=241  Identities=16%  Similarity=0.209  Sum_probs=185.0

Q ss_pred             ceeeeC-CCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhccc-ccchhhhhccCCCcccccccCCCCC
Q psy3337           3 CDVHSN-GKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRK-EKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         3 ~~~~~~-~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      |.-+++ .+.+|+++|+|+.+.||++..+....           +.-.|+++-. .....+....               
T Consensus       219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-----------rtf~gH~k~Vrd~~~s~~g~~---------------  272 (503)
T KOG0282|consen  219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-----------RTFKGHRKPVRDASFNNCGTS---------------  272 (503)
T ss_pred             hhhhccceeeEEEecCCCceEEEEEEecCccee-----------hhhhcchhhhhhhhccccCCe---------------
Confidence            444555 88999999999999999998744332           2223332221 1111222111               


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                               ..+++.|+.|++ |.++|+++..+.  ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|
T Consensus       273 ---------fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h  341 (503)
T KOG0282|consen  273 ---------FLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH  341 (503)
T ss_pred             ---------eeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence                     558899999999 999999999985  34456899999998 89999999999999999999999999999


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC----------CC----------CceEEEEee------
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT----------PD----------NIKYLFKRC------  212 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~----------~~----------~~~~~~~~~------  212 (297)
                      -+.|..+.|-++++.+++++.|+++++|+.+.+..+.....+.          |.          +...+++..      
T Consensus       342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n  421 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN  421 (503)
T ss_pred             hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence            9999999999999999999999999999988765433221111          11          111111110      


Q ss_pred             ------------eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCC-CEEEEE
Q psy3337         213 ------------RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDG-RFVAVG  278 (297)
Q Consensus       213 ------------~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg-~~l~~~  278 (297)
                                  --..+.|||||.+|++        |+.+|.+.+||..+-+++..+..|.. +..+.|+|.. ..+|++
T Consensus       422 kkK~feGh~vaGys~~v~fSpDG~~l~S--------GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~  493 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFSPDGRTLCS--------GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATC  493 (503)
T ss_pred             HhhhhcceeccCceeeEEEcCCCCeEEe--------ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEec
Confidence                        0124789999999998        77799999999999999999999966 9999999954 578999


Q ss_pred             ecCCCeEEEEE
Q psy3337         279 TMFTGSVFVYI  289 (297)
Q Consensus       279 ~~~dg~i~vwd  289 (297)
                      +. ||.|++||
T Consensus       494 ~w-~G~Ikiwd  503 (503)
T KOG0282|consen  494 GW-DGLIKIWD  503 (503)
T ss_pred             cc-CceeEecC
Confidence            99 99999996

>KOG0266|consensus

Probab=99.96  E-value=8e-28  Score=211.71  Aligned_cols=187  Identities=19%  Similarity=0.332  Sum_probs=163.3

Q ss_pred             CCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC-CCCeeeEEeccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF-PKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~  165 (297)
                      ..+++.|+.+++ ...+..  ....+. +|...|..++|+|+++++++++.|++|+|||+ ..+..++++.+|...|+++
T Consensus       174 l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~  252 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV  252 (456)
T ss_pred             EEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE
Confidence            446778889999 666666  566665 99999999999999999999999999999999 5568899999999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +|+|+++++++|+.|++|++||+++++++..+..|..          .+..++|++++.+|++.        +.|+.|++
T Consensus       253 ~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----------~is~~~f~~d~~~l~s~--------s~d~~i~v  314 (456)
T KOG0266|consen  253 AFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----------GISGLAFSPDGNLLVSA--------SYDGTIRV  314 (456)
T ss_pred             EecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC----------ceEEEEECCCCCEEEEc--------CCCccEEE
Confidence            9999999999999999999999999999999998863          23347899999999994        45999999


Q ss_pred             EeCCCCc--eEEEeccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         246 WDVDSGR--LRLAREMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       246 wd~~~~~--~~~~~~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ||+.++.  ++..+..+.   .++++.|+|++.+|++++. |+.+++||+.+++.+
T Consensus       315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDLRSGKSV  369 (456)
T ss_pred             EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CCeEEEEEccCCcce
Confidence            9999998  556665543   3799999999999999999 999999999987654

>KOG0295|consensus

Probab=99.96  E-value=2.8e-28  Score=194.88  Aligned_cols=231  Identities=16%  Similarity=0.224  Sum_probs=192.0

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIED   85 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
                      |+..|++++++.+|=.+++|+.....+...  ...+.           ........--+.                    
T Consensus       158 ~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k--s~~gh-----------~h~vS~V~f~P~--------------------  204 (406)
T KOG0295|consen  158 FDASGKYLATCSSDLSAKLWDFDTFFRCIK--SLIGH-----------EHGVSSVFFLPL--------------------  204 (406)
T ss_pred             EecCccEEEecCCccchhheeHHHHHHHHH--HhcCc-----------ccceeeEEEEec--------------------
Confidence            777899999999999999999876532210  00000           000000000000                    


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                       ..--.+.+.|++|+. +..+|.++.++. +|...|..++.+.||..+++++.|.+|++|-+.++++...++.|..+|.+
T Consensus       205 -gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc  282 (406)
T KOG0295|consen  205 -GDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC  282 (406)
T ss_pred             -CCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence             001348899999999 999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             EEEccC---------------CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         165 VDFSIS---------------GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       165 ~~~sp~---------------~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      ++|-|.               +.++.+++.|++|++||+.++.++.++.+|.    .+      +..++|+|.|+||+++
T Consensus       283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd----nw------Vr~~af~p~Gkyi~Sc  352 (406)
T KOG0295|consen  283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD----NW------VRGVAFSPGGKYILSC  352 (406)
T ss_pred             EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc----ce------eeeeEEcCCCeEEEEE
Confidence            999763               2589999999999999999999999999886    22      3358899999999998


Q ss_pred             ccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         230 ANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +.        |+++++||+.+++++..+..|+. +++++|+.+-.++++|+- |.++++|..
T Consensus       353 aD--------Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV-dqt~KvwEc  405 (406)
T KOG0295|consen  353 AD--------DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWEC  405 (406)
T ss_pred             ec--------CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc-cceeeeeec
Confidence            87        99999999999999999999988 999999999999999999 999999975

>KOG0275|consensus

Probab=99.96  E-value=3.9e-29  Score=197.56  Aligned_cols=252  Identities=15%  Similarity=0.198  Sum_probs=198.3

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      -|++|+++|+||+++.-|+-+.+|+.......++.......+.-.-+..   -+-........                 
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~a---Vlci~FSRDsE-----------------  276 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDA---VLCISFSRDSE-----------------  276 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccc---eEEEeecccHH-----------------
Confidence            4999999999999999999999999987664332111111000000000   00000000001                 


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                             ...+|+.||.|++ .+.+|++++.+...|...|+|+.||.|+..+++++.|.++++.-+.+|+++..+++|..
T Consensus       277 -------MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS  349 (508)
T KOG0275|consen  277 -------MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS  349 (508)
T ss_pred             -------HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence                   1568999999999 89999999999888999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC-----------CCC-ceEEEE------------------
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT-----------PDN-IKYLFK------------------  210 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~-----------~~~-~~~~~~------------------  210 (297)
                      .|+...|.++|..+++++.||+|++|+..+++++.+++...           |.. ..+++.                  
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs  429 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS  429 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence            99999999999999999999999999999988887776432           100 011110                  


Q ss_pred             --e-----eeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCC
Q psy3337         211 --R-----CRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFT  282 (297)
Q Consensus       211 --~-----~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~d  282 (297)
                        +     ..|.....+|.|.++++++.        |+.++.|.+.+|++.+.+..|+. |..++.+|..+.|++-++ |
T Consensus       430 fsSGkREgGdFi~~~lSpkGewiYcigE--------D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE-D  500 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEWIYCIGE--------DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE-D  500 (508)
T ss_pred             eccCCccCCceEEEEecCCCcEEEEEcc--------CcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc-c
Confidence              0     11334567899999999776        99999999999999999999988 999999999999999999 9


Q ss_pred             CeEEEEE
Q psy3337         283 GSVFVYI  289 (297)
Q Consensus       283 g~i~vwd  289 (297)
                      |.+++|.
T Consensus       501 gllKLWk  507 (508)
T KOG0275|consen  501 GLLKLWK  507 (508)
T ss_pred             chhhhcC
Confidence            9999995

>KOG0305|consensus

Probab=99.96  E-value=9.1e-28  Score=204.90  Aligned_cols=236  Identities=14%  Similarity=0.167  Sum_probs=194.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhh-hhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTI-VRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++..++.+|.+|+.|-.++.++||++.......            .-.+ +..|-..                       
T Consensus       221 tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~------------~~~~~h~~rvg~-----------------------  265 (484)
T KOG0305|consen  221 TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR------------TLRGSHASRVGS-----------------------  265 (484)
T ss_pred             EEEEECCCCCEEEEeecCCeEEEEehhhccccc------------cccCCcCceeEE-----------------------
Confidence            455578899999999999999999987765431            1111 1122211                       


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEE-EecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQT-VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                        .........+|+.|+.|.. |+...+.... +. +|...|..+.|++|+++||+|+.|+.+.|||....++...+..|
T Consensus       266 --laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H  342 (484)
T KOG0305|consen  266 --LAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH  342 (484)
T ss_pred             --EeccCceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Confidence              1222223668999999999 9888776655 54 99999999999999999999999999999999888899999999


Q ss_pred             cCCeeEEEEcc-CCCEEEEEe--CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         159 SKEIDDVDFSI-SGEQIVSIA--KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       159 ~~~v~~~~~sp-~~~~l~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      ...|.+++|+| ...+||+|+  .|+.|++||..++..+..+...           .++..|.|++..+.|++..     
T Consensus       343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-----------sQVcsL~Wsk~~kEi~sth-----  406 (484)
T KOG0305|consen  343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-----------SQVCSLIWSKKYKELLSTH-----  406 (484)
T ss_pred             ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-----------CceeeEEEcCCCCEEEEec-----
Confidence            99999999999 667888875  6999999999999888766533           3455688999998887765     


Q ss_pred             ccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         236 NKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                       |..+..|.||+..+.+.+..+.+|.. |..++++|||..|++|+. |.++++|++...
T Consensus       407 -G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~-DETlrfw~~f~~  463 (484)
T KOG0305|consen  407 -GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA-DETLRFWNLFDE  463 (484)
T ss_pred             -CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc-cCcEEeccccCC
Confidence             66788999999999999999999988 999999999999999999 999999998763

>KOG0315|consensus

Probab=99.96  E-value=3.5e-27  Score=180.04  Aligned_cols=198  Identities=17%  Similarity=0.262  Sum_probs=162.5

Q ss_pred             CCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe--eeEEeccccCC
Q psy3337          85 DPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK--PLLHIEAHSKE  161 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~  161 (297)
                      +.|++..+++.|.+||+ ...+|.+..++. ..++.|+.+.+.|+++.||+++.. .|++||+++++  ++.+|.+|...
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kN   85 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKN   85 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCc
Confidence            36788999999999999 899999999997 677889999999999999998755 79999998765  68999999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCC--------ceEEE---------Ee-------------
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDN--------IKYLF---------KR-------------  211 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~--------~~~~~---------~~-------------  211 (297)
                      |+++.|..+|+.+++|+.||+++|||++...+.+.+....|..        ..+..         ..             
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence            9999999999999999999999999999765544443322211        01110         00             


Q ss_pred             --eeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC------ceEEEeccCCC-eEEEEEcCCCCEEEEEecCC
Q psy3337         212 --CRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG------RLRLAREMKES-LSALAVRDDGRFVAVGTMFT  282 (297)
Q Consensus       212 --~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~------~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~d  282 (297)
                        ..+.++...|||.+++.+.+        .|.+++|++...      +++..++.|.. +..+.+|||+++|++++. |
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nn--------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-d  236 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANN--------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-D  236 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecC--------CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-C
Confidence              11345778899999988766        899999998763      35566778888 999999999999999999 9


Q ss_pred             CeEEEEEeCCc
Q psy3337         283 GSVFVYIAFSL  293 (297)
Q Consensus       283 g~i~vwd~~~~  293 (297)
                      .+++||++.++
T Consensus       237 ktv~iwn~~~~  247 (311)
T KOG0315|consen  237 KTVKIWNTDDF  247 (311)
T ss_pred             ceEEEEecCCc
Confidence            99999999876

>KOG0293|consensus

Probab=99.96  E-value=1.3e-27  Score=194.09  Aligned_cols=214  Identities=13%  Similarity=0.132  Sum_probs=165.5

Q ss_pred             eeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCC
Q psy3337           4 DVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKI   83 (297)
Q Consensus         4 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
                      +.|++.|+|||+|..|.+..+|.+.....-                                                  
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~--------------------------------------------------  259 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDVHF--------------------------------------------------  259 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCcce--------------------------------------------------
Confidence            358999999999999999999988664321                                                  


Q ss_pred             CCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-cccCCe
Q psy3337          84 EDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEI  162 (297)
Q Consensus        84 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v  162 (297)
                                             +..+++. +|..+|..+.||||.++|++|+.|..+.+||+.+|.....+. +|...+
T Consensus       260 -----------------------kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~  315 (519)
T KOG0293|consen  260 -----------------------KLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSV  315 (519)
T ss_pred             -----------------------eeeeeee-cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCc
Confidence                                   3456777 999999999999999999999999999999999999877665 345789


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCc-------e---eeeeeccCCCCceEEE----------------------E
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGS-------L---SKELKWNTPDNIKYLF----------------------K  210 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~-------~---~~~~~~~~~~~~~~~~----------------------~  210 (297)
                      .+.+|.|||..+++|+.|+++..||+....       .   +.-+.. ++++.....                      .
T Consensus       316 ~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlai-t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise  394 (519)
T KOG0293|consen  316 SSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAI-TYDGKYVLLVTVDKKIRLYNREARVDRGLISE  394 (519)
T ss_pred             ceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEE-cCCCcEEEEEecccceeeechhhhhhhccccc
Confidence            999999999999999999999999985321       0   111110 011111100                      0


Q ss_pred             eeeeeeeeeCCCCeEEEEecc-------------------------------------CcccccCCCCeEEEEeCCCCce
Q psy3337         211 RCRYGLVEDSPKRSRLFTLAN-------------------------------------PLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       211 ~~~~~~~~~s~~~~~l~~~~~-------------------------------------~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                      ...+..++.|.+++++++--.                                     .++++||+|+.|+||+..+|++
T Consensus       395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl  474 (519)
T KOG0293|consen  395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL  474 (519)
T ss_pred             cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence            112344566666666554321                                     1789999999999999999999


Q ss_pred             EEEeccCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEEeCCc
Q psy3337         254 RLAREMKES-LSALAVRD-DGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       254 ~~~~~~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +..+.+|.. |++++|+| |-..+|+++. ||+|+||-....
T Consensus       475 l~~LsGHs~~vNcVswNP~~p~m~ASasD-DgtIRIWg~~~~  515 (519)
T KOG0293|consen  475 LAVLSGHSKTVNCVSWNPADPEMFASASD-DGTIRIWGPSDN  515 (519)
T ss_pred             eEeecCCcceeeEEecCCCCHHHhhccCC-CCeEEEecCCcc
Confidence            999999998 99999999 5567999999 999999987643

>KOG0645|consensus

Probab=99.96  E-value=1.7e-26  Score=178.26  Aligned_cols=165  Identities=18%  Similarity=0.268  Sum_probs=142.4

Q ss_pred             eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC--CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEE
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK--MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFV  185 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~l  185 (297)
                      +...+..+|...|..++|+|.|++|++|+.|.++.||.-..  .+++..+.+|...|.+++|+++|++||++++|+.|-+
T Consensus        52 ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWi  131 (312)
T KOG0645|consen   52 CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWI  131 (312)
T ss_pred             EEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEE
Confidence            34444458999999999999999999999999999998654  3678899999999999999999999999999999999


Q ss_pred             EEcCCC---ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC---CCceEEEecc
Q psy3337         186 WNSKNG---SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD---SGRLRLAREM  259 (297)
Q Consensus       186 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~---~~~~~~~~~~  259 (297)
                      |.+..+   .++..+..|..+.          ..+.|+|....|++++.        |.+|++|+-.   ..+++..+.+
T Consensus       132 We~deddEfec~aVL~~HtqDV----------K~V~WHPt~dlL~S~SY--------DnTIk~~~~~~dddW~c~~tl~g  193 (312)
T KOG0645|consen  132 WEIDEDDEFECIAVLQEHTQDV----------KHVIWHPTEDLLFSCSY--------DNTIKVYRDEDDDDWECVQTLDG  193 (312)
T ss_pred             EEecCCCcEEEEeeeccccccc----------cEEEEcCCcceeEEecc--------CCeEEEEeecCCCCeeEEEEecC
Confidence            998744   4567777776543          23668999999999655        9999999876   2678999999


Q ss_pred             CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         260 KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       260 ~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      |.. |.+++|+|.|..|++++. |++++||-+.
T Consensus       194 ~~~TVW~~~F~~~G~rl~s~sd-D~tv~Iw~~~  225 (312)
T KOG0645|consen  194 HENTVWSLAFDNIGSRLVSCSD-DGTVSIWRLY  225 (312)
T ss_pred             ccceEEEEEecCCCceEEEecC-CcceEeeeec
Confidence            986 999999999999999999 9999999854

>KOG0276|consensus

Probab=99.96  E-value=2.6e-27  Score=201.20  Aligned_cols=186  Identities=15%  Similarity=0.208  Sum_probs=166.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-CeeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-MKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~  167 (297)
                      ...|++|..|++ +..+++.+..+. .|.+.|.|++.+|.-.++++++.|-+|++||.+. ..+.++|.+|+..|.+++|
T Consensus        70 iv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             EEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence            348999999999 999999999999 9999999999999999999999999999999874 4688999999999999999


Q ss_pred             cc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC--CCeEEEEeccCcccccCCCCeEE
Q psy3337         168 SI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP--KRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       168 sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      +| |.+.|++++-|++|++|.+.+..+..++.+|....          +.+.+-+  |..+|++        |++|..|+
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV----------N~Vdyy~~gdkpylIs--------gaDD~tiK  210 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV----------NCVDYYTGGDKPYLIS--------GADDLTIK  210 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc----------ceEEeccCCCcceEEe--------cCCCceEE
Confidence            99 67899999999999999999999999999887432          2344433  4457776        77799999


Q ss_pred             EEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         245 QWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +||..+..|++++.+|.. |..+.|+|.=.+|++|++ ||+++||...|.+.
T Consensus       211 vWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE-DGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  211 VWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE-DGTVRIWNSKTYKL  261 (794)
T ss_pred             EeecchHHHHHHhhcccccceEEEecCCCcEEEEecC-CccEEEecCcceeh
Confidence            999999999999999988 999999999999999999 99999999887654

>KOG0319|consensus

Probab=99.96  E-value=1.3e-27  Score=206.39  Aligned_cols=182  Identities=14%  Similarity=0.231  Sum_probs=159.8

Q ss_pred             CCCCCCCceEEE-EeeCCC---eEEEE-----ecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          90 NSIDSKEKNLRF-GFKTFD---SVQTV-----FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~---~~~~~-----~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      ..+++.|.++++ ++...+   ....+     ...|...|+|++++|+..++|||+.|.+.+||+++....+.++.+|..
T Consensus       427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R  506 (775)
T KOG0319|consen  427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR  506 (775)
T ss_pred             EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence            568999999999 444311   11111     136999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|+++.|+|..+.++++|.|++|+||.+.+..+++++.+|.    ..++      ...|-.++..|++++.        |
T Consensus       507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~----~aVl------ra~F~~~~~qliS~~a--------d  568 (775)
T KOG0319|consen  507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT----SAVL------RASFIRNGKQLISAGA--------D  568 (775)
T ss_pred             ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc----ceeE------eeeeeeCCcEEEeccC--------C
Confidence            99999999999999999999999999999999999999997    3333      2557788999998655        9


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      |-|++|++.+++|+.++..|.. |++++.+|.+..+++|+. ||.|.+|.=
T Consensus       569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~-Dg~i~~wkD  618 (775)
T KOG0319|consen  569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG-DGRIIFWKD  618 (775)
T ss_pred             CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCC-CeEEEEeec
Confidence            9999999999999999999988 999999999999999999 999999963

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.5e-26  Score=189.71  Aligned_cols=241  Identities=19%  Similarity=0.312  Sum_probs=188.7

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|..+++++++|++++.|+.+++|++...............         .  ....                      
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~---------i--~~~~----------------------   58 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP---------V--RDVA----------------------   58 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc---------e--eEEE----------------------
Confidence            356678888999999999999999998754211000000000         0  0000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                       ..... -...+++.|+.+++ +..+++.+..+. .|...|.++.|+|+++++++++.|+.|.+||+.+++....+..|.
T Consensus        59 -~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  135 (289)
T cd00200          59 -ASADG-TYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT  135 (289)
T ss_pred             -ECCCC-CEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence             00000 01446667999999 888888888887 899899999999999999999889999999999889888898999


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      ..+.+++|+|++.++++++.|+.|++||+++++.+..+..+.          ..+..+.|+|++..+++++.        
T Consensus       136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~--------  197 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT----------GEVNSVAFSPDGEKLLSSSS--------  197 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc----------cccceEEECCCcCEEEEecC--------
Confidence            999999999999899888889999999999888777776543          12345778999988888544        


Q ss_pred             CCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++.|++||+..++.+..+..+.. +.+++|+|++.++++++. ||.|++||+.+++.+
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~  254 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE-DGTIRVWDLRTGECV  254 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC-CCcEEEEEcCCceeE
Confidence            99999999999988888866664 999999999999999998 999999999876643

>KOG0265|consensus

Probab=99.96  E-value=7.7e-27  Score=182.46  Aligned_cols=233  Identities=15%  Similarity=0.222  Sum_probs=190.3

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIED   85 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
                      +..++..++++|.|.+++.|++..+...+....            .                      ...-+.-....-
T Consensus        98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~------------h----------------------~~~vNs~~p~rr  143 (338)
T KOG0265|consen   98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG------------H----------------------TSFVNSLDPSRR  143 (338)
T ss_pred             eccCCCEEEEecCCceEEEEecccceeeehhcc------------c----------------------cceeeecCcccc
Confidence            667899999999999999999988775521000            0                      001111123344


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      .+.|..+++.|++++| |+++...++++  ...-.++++.|..++..+.+|+-|+.|++||++....+..+.+|.+.|+.
T Consensus       144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~  221 (338)
T KOG0265|consen  144 GPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITG  221 (338)
T ss_pred             CCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceee
Confidence            5566779999999999 99988888887  34556899999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCC----ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNG----SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      +..+|+|.++++-+.|.++++||++..    .++..+.++......-.+.      .+|+|++..+.+        |+.|
T Consensus       222 lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~------cswsp~~~~i~a--------gs~d  287 (338)
T KOG0265|consen  222 LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK------CSWSPNGTKITA--------GSAD  287 (338)
T ss_pred             EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce------eeccCCCCcccc--------cccc
Confidence            999999999999999999999999743    3466666654332222222      568999998877        6669


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      ..+++||......+..+++|.. |.+++|+|...+|.+++. |.+|++=+
T Consensus       288 r~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s-dk~i~lge  336 (338)
T KOG0265|consen  288 RFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS-DKTIYLGE  336 (338)
T ss_pred             ceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc-CceeEeec
Confidence            9999999999999999999988 999999999999999999 99998744

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=2.2e-26  Score=216.36  Aligned_cols=240  Identities=15%  Similarity=0.141  Sum_probs=177.9

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|+++|++||+||.|+.++||++.......  .....+         ....  .                 ...+..
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~~~---------~~~~--~-----------------~~~~v~  536 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIHYP---------VVEL--A-----------------SRSKLS  536 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccccc---------eEEe--c-----------------ccCcee
Confidence            345588999999999999999999975421110  000000         0000  0                 000000


Q ss_pred             CCC---CCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          82 KIE---DPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        82 ~~~---~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                      ...   ...-...+++.|++|++ |+.+++.+..+. +|...|++++|+| ++.+|++|+.|++|++||++++..+..+.
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            000   00112457788999999 888888888887 9999999999997 78999999999999999999998888887


Q ss_pred             cccCCeeEEEEc-cCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         157 AHSKEIDDVDFS-ISGEQIVSIAKDGKAFVWNSKNGS-LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       157 ~~~~~v~~~~~s-p~~~~l~s~~~d~~v~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      .+ ..|.++.|+ +++.+|++|+.|+.|++||+++.. .+..+..|..          .+..+.|. ++.+|+++     
T Consensus       616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~----------~V~~v~f~-~~~~lvs~-----  678 (793)
T PLN00181        616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK----------TVSYVRFV-DSSTLVSS-----  678 (793)
T ss_pred             cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC----------CEEEEEEe-CCCEEEEE-----
Confidence            54 579999995 579999999999999999998765 4555555541          12235565 56677774     


Q ss_pred             cccCCCCeEEEEeCCC------CceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         235 QNKRGISYVQQWDVDS------GRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~------~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                         +.|+.|++||++.      ..++..+.+|.. +.+++|+|++.+|++|+. |+.|++|+....
T Consensus       679 ---s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-D~~v~iw~~~~~  740 (793)
T PLN00181        679 ---STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-TNEVFVYHKAFP  740 (793)
T ss_pred             ---ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-CCEEEEEECCCC
Confidence               4599999999974      356778888877 899999999999999999 999999997543

>KOG0284|consensus

Probab=99.95  E-value=3.7e-28  Score=196.81  Aligned_cols=231  Identities=14%  Similarity=0.148  Sum_probs=187.5

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeec----cccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM----NGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGK   77 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~   77 (297)
                      .|+..+.+|..+++|-.++.++.|..+...-..    +.+.....               +......+            
T Consensus       142 r~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdl---------------afSpnDsk------------  194 (464)
T KOG0284|consen  142 RTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDL---------------AFSPNDSK------------  194 (464)
T ss_pred             eeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhhee---------------ccCCCCce------------
Confidence            356688899999999999999999876544221    11111111               11111111            


Q ss_pred             CCCCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          78 NKKDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                                  ..+.++|++|+| |....+....+. ||...|.++.|+|.-.++++|+.|+.|++||.++++++.++.
T Consensus       195 ------------F~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh  261 (464)
T KOG0284|consen  195 ------------FLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH  261 (464)
T ss_pred             ------------eEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence                        568899999999 877777777777 999999999999999999999999999999999999999999


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      .|...|..+.|+|++++|++++.|..++++|+++-+.+..+++|..+          +..++|+|-...|++.       
T Consensus       262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd----------v~~~~WhP~~~~lfts-------  324 (464)
T KOG0284|consen  262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD----------VTSLTWHPLNESLFTS-------  324 (464)
T ss_pred             hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh----------heeeccccccccceee-------
Confidence            99999999999999999999999999999999988888888888632          2247788877767663       


Q ss_pred             cCCCCeEEEEeCCCCceEEEec-cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         237 KRGISYVQQWDVDSGRLRLARE-MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~-~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      |..|+.|..|.+...+++..+. .|.. |++++|+|=|.+|++|+. |.++++|.-
T Consensus       325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn-d~t~rfw~r  379 (464)
T KOG0284|consen  325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN-DRTVRFWTR  379 (464)
T ss_pred             ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC-Ccceeeecc
Confidence            6679999999999655555543 4665 999999999999999999 999999963

>KOG0265|consensus

Probab=99.95  E-value=4.6e-27  Score=183.68  Aligned_cols=197  Identities=15%  Similarity=0.240  Sum_probs=167.7

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++++-|+++|..||+||.|+.|=||++..+-..                                               
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-----------------------------------------------   82 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-----------------------------------------------   82 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccccc-----------------------------------------------
Confidence            356678999999999999999999987654321                                               


Q ss_pred             CCCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          81 DKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                                                  ...+. +|.+.|..+.|.+|++.+++++.|.+|+.||+++|+.++.+++|..
T Consensus        83 ----------------------------~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~  133 (338)
T KOG0265|consen   83 ----------------------------FWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS  133 (338)
T ss_pred             ----------------------------eeeec-cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccc
Confidence                                        23444 9999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         161 EIDDVDFSISG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       161 ~v~~~~~sp~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      -|+.+.-+.-| .++.+++.|++++|||+++...++++...      +.     +.++.|..++..+.+...        
T Consensus       134 ~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k------yq-----ltAv~f~d~s~qv~sggI--------  194 (338)
T KOG0265|consen  134 FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK------YQ-----LTAVGFKDTSDQVISGGI--------  194 (338)
T ss_pred             eeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc------ee-----EEEEEecccccceeeccc--------
Confidence            99999844334 35668889999999999988887776432      22     224778888888888544        


Q ss_pred             CCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      |+.|++||++....+..+.+|.. |+.+..+|+|.++++-+. |.++++||++-.
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM-d~tvrvwd~rp~  248 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM-DNTVRVWDVRPF  248 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc-cceEEEEEeccc
Confidence            99999999999999999999987 999999999999999999 999999998753

>KOG0285|consensus

Probab=99.95  E-value=2.9e-27  Score=188.95  Aligned_cols=235  Identities=15%  Similarity=0.251  Sum_probs=191.0

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhc-ccccchhhhhccCCCcccccccCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRK-RKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      |..+.+....|++++.|++++||++-...+..            ...|+.. -|..+-.+.                   
T Consensus       156 ~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl------------tltGhi~~vr~vavS~r-------------------  204 (460)
T KOG0285|consen  156 SVAVDPGNEWFATGSADRTIKIWDLATGQLKL------------TLTGHIETVRGVAVSKR-------------------  204 (460)
T ss_pred             EEeeCCCceeEEecCCCceeEEEEcccCeEEE------------eecchhheeeeeeeccc-------------------
Confidence            55577777888888999999999998766431            1111111 111111111                   


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                          -|+ .-+++.|+.|+- |++..+.++.+. ||-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..
T Consensus       205 ----HpY-lFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~  278 (460)
T KOG0285|consen  205 ----HPY-LFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN  278 (460)
T ss_pred             ----Cce-EEEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence                011 347788999999 999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|..+.+.|-...+++++.|++|++||++.|+...++..|.-          .+..++.+|....+++++         .
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk----------svral~lhP~e~~fASas---------~  339 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK----------SVRALCLHPKENLFASAS---------P  339 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc----------eeeEEecCCchhhhhccC---------C
Confidence            999999999888999999999999999999999888877641          122467899988777744         3


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ..|+.|++..|..+..+.+|.. |.+++...|| ++++|+. .|.+.+||.+++..
T Consensus       340 dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~d-ng~~~fwdwksg~n  393 (460)
T KOG0285|consen  340 DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGD-NGSIMFWDWKSGHN  393 (460)
T ss_pred             ccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCC-ceEEEEEecCcCcc
Confidence            5799999999999999999988 9999998775 6777888 99999999988754

>KOG0318|consensus

Probab=99.95  E-value=6.3e-26  Score=189.33  Aligned_cols=195  Identities=17%  Similarity=0.228  Sum_probs=166.4

Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec---c
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE---A  157 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~  157 (297)
                      .....|+...++++|+++.+ +-...+...++. .|...|.|+.|+|||.++++.+.||+|.+||-.+++.+..|.   +
T Consensus       155 ~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a  233 (603)
T KOG0318|consen  155 FKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA  233 (603)
T ss_pred             ccCCCceEEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence            33445566678999999999 877777777777 899999999999999999999999999999999999999998   8


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      |.+.|.+++|+||++.|++++.|.+++|||+.+.+++.++.......      ..+++.+ |.  ...|++++.      
T Consensus       234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~------dqqvG~l-Wq--kd~lItVSl------  298 (603)
T KOG0318|consen  234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE------DQQVGCL-WQ--KDHLITVSL------  298 (603)
T ss_pred             ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh------ceEEEEE-Ee--CCeEEEEEc------
Confidence            99999999999999999999999999999999999888886543211      1112222 33  445777666      


Q ss_pred             CCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         238 RGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                        +|.|..++.....++..+.+|.. |+++..+||+.+|++|+. ||.|.-|+..++..
T Consensus       299 --~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy-DG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  299 --SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY-DGHINSWDSGSGTS  354 (603)
T ss_pred             --CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc-CceEEEEecCCccc
Confidence              99999999999889999999988 999999999999999999 99999999987753

>KOG0281|consensus

Probab=99.95  E-value=3e-28  Score=193.99  Aligned_cols=177  Identities=18%  Similarity=0.251  Sum_probs=154.2

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe---eeEEeccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK---PLLHIEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~  165 (297)
                      ..+|+.|.+|++ |..+|+++.++. +|...|..+.|+.  .++++++.|.++.+||+.+..   +.+.+.+|...|+.+
T Consensus       250 iisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV  326 (499)
T KOG0281|consen  250 IVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  326 (499)
T ss_pred             EEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence            558999999999 999999999999 9999999999974  499999999999999997654   335678999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      .|+  .+++++++.|.+|++|++.+++.+.++.+|....            .+..-.++.+++        |+.|.+|++
T Consensus       327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI------------AClQYr~rlvVS--------GSSDntIRl  384 (499)
T KOG0281|consen  327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI------------ACLQYRDRLVVS--------GSSDNTIRL  384 (499)
T ss_pred             ccc--cceEEEecCCceEEEEeccceeeehhhhcccccc------------eehhccCeEEEe--------cCCCceEEE
Confidence            995  5699999999999999999999999998885321            112334666666        778999999


Q ss_pred             EeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         246 WDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ||+..|.+++.+++|+. |.++.|  |.+.|++|.. ||+|+|||+..+.
T Consensus       385 wdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY-DGkikvWdl~aal  431 (499)
T KOG0281|consen  385 WDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY-DGKIKVWDLQAAL  431 (499)
T ss_pred             EeccccHHHHHHhchHHhhhheee--cCceeeeccc-cceEEEEeccccc
Confidence            99999999999999999 999999  6689999999 9999999998754

>KOG0285|consensus

Probab=99.95  E-value=2.8e-27  Score=189.01  Aligned_cols=186  Identities=17%  Similarity=0.238  Sum_probs=167.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|++++| |+.+|+...++. ||-..|..+++|+-..||++++.|+.|+.||++..+.++.+.+|-..|.+++.+
T Consensus       166 f~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh  244 (460)
T KOG0285|consen  166 FATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH  244 (460)
T ss_pred             EEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecc
Confidence            458999999999 999999999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |.-..|++++.|.++++||+++...+..+.+|....          ..+.+.|-...+++        |+.|++|++||+
T Consensus       245 PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V----------~~V~~~~~dpqvit--------~S~D~tvrlWDl  306 (460)
T KOG0285|consen  245 PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV----------ASVMCQPTDPQVIT--------GSHDSTVRLWDL  306 (460)
T ss_pred             ccceeEEecCCcceEEEeeecccceEEEecCCCCcc----------eeEEeecCCCceEE--------ecCCceEEEeee
Confidence            999999999999999999999999999999986221          12444555555666        667999999999


Q ss_pred             CCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +.|+....+..|.. |.+++.+|....+++++.  ..|+-|++..++.+
T Consensus       307 ~agkt~~tlt~hkksvral~lhP~e~~fASas~--dnik~w~~p~g~f~  353 (460)
T KOG0285|consen  307 RAGKTMITLTHHKKSVRALCLHPKENLFASASP--DNIKQWKLPEGEFL  353 (460)
T ss_pred             ccCceeEeeecccceeeEEecCCchhhhhccCC--ccceeccCCccchh
Confidence            99999999999888 999999999999999995  57999999887754

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=4.8e-25  Score=195.10  Aligned_cols=174  Identities=10%  Similarity=0.180  Sum_probs=133.9

Q ss_pred             EEEEecCCCCcEEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      +..+. +|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||
T Consensus       118 ~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD  195 (568)
T PTZ00420        118 QCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIID  195 (568)
T ss_pred             eEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence            34455 89999999999999865 5799999999999999988777775 667899999999999999999999999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC--eE
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES--LS  264 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~--v~  264 (297)
                      +++++.+..+.+|.......     .+....|++++.+|++++.    .+..++.|++||++. ++++..+..+..  +.
T Consensus       196 ~Rsg~~i~tl~gH~g~~~s~-----~v~~~~fs~d~~~IlTtG~----d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L  266 (568)
T PTZ00420        196 PRKQEIASSFHIHDGGKNTK-----NIWIDGLGGDDNYILSTGF----SKNNMREMKLWDLKNTTSALVTMSIDNASAPL  266 (568)
T ss_pred             CCCCcEEEEEecccCCceeE-----EEEeeeEcCCCCEEEEEEc----CCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence            99999998888876321111     1222456789999988765    122335899999995 666666554433  22


Q ss_pred             EEEE-cCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         265 ALAV-RDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       265 ~~~~-s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ...| .++|.++++|.. |+.|++|++..+.
T Consensus       267 ~p~~D~~tg~l~lsGkG-D~tIr~~e~~~~~  296 (568)
T PTZ00420        267 IPHYDESTGLIYLIGKG-DGNCRYYQHSLGS  296 (568)
T ss_pred             EEeeeCCCCCEEEEEEC-CCeEEEEEccCCc
Confidence            2333 456889999999 9999999997654

>KOG0640|consensus

Probab=99.95  E-value=7.5e-27  Score=183.51  Aligned_cols=217  Identities=12%  Similarity=0.188  Sum_probs=171.5

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeec-cccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQM-NGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      |+.|+++|.++++|+.|..++|+++....... ..+++.++                                       
T Consensus       117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~---------------------------------------  157 (430)
T KOG0640|consen  117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD---------------------------------------  157 (430)
T ss_pred             eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC---------------------------------------
Confidence            67899999999999999999999987654321 11111111                                       


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeC-CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee---eEEecc
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKT-FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP---LLHIEA  157 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~---~~~~~~  157 (297)
                                           ... .-.++++. .|.+.|+++.|+|-...|++|+.|++|++||+.....   ...|+ 
T Consensus       158 ---------------------~qa~hPvIRTlY-DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-  214 (430)
T KOG0640|consen  158 ---------------------TQARHPVIRTLY-DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-  214 (430)
T ss_pred             ---------------------cccCCceEeehh-hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-
Confidence                                 000 13577888 9999999999999999999999999999999965332   22333 


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      ...+|.++.|+|.|.+|+.|....++++||+.+.++...-.   |+.    -....+..+.+++.++..++        |
T Consensus       215 d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---Pd~----qht~ai~~V~Ys~t~~lYvT--------a  279 (430)
T KOG0640|consen  215 DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---PDD----QHTGAITQVRYSSTGSLYVT--------A  279 (430)
T ss_pred             ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC---ccc----ccccceeEEEecCCccEEEE--------e
Confidence            45689999999999999999999999999999887754433   111    01234556889999998888        5


Q ss_pred             CCCCeEEEEeCCCCceEEEecc-CCC--eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         238 RGISYVQQWDVDSGRLRLAREM-KES--LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~~~-~~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      +.||.|++||--+++|+.++.. |+.  |.+..|+.||+||++.+. |..+++|++.++++++
T Consensus       280 SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  280 SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEISTGRMLK  341 (430)
T ss_pred             ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeeecCCceEE
Confidence            5699999999999999988854 544  999999999999999999 9999999999998764

>KOG0316|consensus

Probab=99.95  E-value=2.5e-26  Score=174.09  Aligned_cols=183  Identities=13%  Similarity=0.150  Sum_probs=155.6

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      +.+.|++|++ ++..|.+++++. +|...|..++.+.|...|++|+.|..|.+||+.+|+.++.|.+|.+.|+.++|+.+
T Consensus        34 tcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee  112 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE  112 (307)
T ss_pred             EcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc
Confidence            6778999999 899999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCC--ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNG--SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      ...+++|+.|.++++||.++.  ++++.+...                    .|+-.-+-++...++.|+.||+++.||+
T Consensus       113 sSVv~SgsfD~s~r~wDCRS~s~ePiQildea--------------------~D~V~Si~v~~heIvaGS~DGtvRtydi  172 (307)
T KOG0316|consen  113 SSVVASGSFDSSVRLWDCRSRSFEPIQILDEA--------------------KDGVSSIDVAEHEIVAGSVDGTVRTYDI  172 (307)
T ss_pred             ceEEEeccccceeEEEEcccCCCCccchhhhh--------------------cCceeEEEecccEEEeeccCCcEEEEEe
Confidence            999999999999999999854  455555322                    1221111222223344888999999999


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      +.|++..-+-++ +|++++|++|++.+++++. |+++++.|-.+|+.++
T Consensus       173 R~G~l~sDy~g~-pit~vs~s~d~nc~La~~l-~stlrLlDk~tGklL~  219 (307)
T KOG0316|consen  173 RKGTLSSDYFGH-PITSVSFSKDGNCSLASSL-DSTLRLLDKETGKLLK  219 (307)
T ss_pred             ecceeehhhcCC-cceeEEecCCCCEEEEeec-cceeeecccchhHHHH
Confidence            999877665544 4999999999999999999 9999999999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=4.4e-25  Score=182.26  Aligned_cols=232  Identities=19%  Similarity=0.281  Sum_probs=181.3

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      +..+.++++.+++++.|+.+++|++...............           -..                   ..    .
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----------i~~-------------------~~----~  101 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-----------VSS-------------------VA----F  101 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-----------EEE-------------------EE----E
Confidence            3447777789999999999999999763211000000000           000                   00    0


Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                      ... ..+..+++.|+.+++ ++.+++....+. .|...|.++.|+|++.++++++.|+.|++||+++++.+..+..|...
T Consensus       102 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~  179 (289)
T cd00200         102 SPD-GRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE  179 (289)
T ss_pred             cCC-CCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccc
Confidence            000 112334556899999 888888888887 89999999999999999999888999999999988888889899989


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      +.++.|+|+++.+++++.|+.|++||++.++.+..+..+..          .+..+.|+|++.++++..        .++
T Consensus       180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~~~~~--------~~~  241 (289)
T cd00200         180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----------GVNSVAFSPDGYLLASGS--------EDG  241 (289)
T ss_pred             cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC----------ceEEEEEcCCCcEEEEEc--------CCC
Confidence            99999999999999999999999999998888777754431          233477899988777743        489


Q ss_pred             eEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         242 YVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      .|++||+.+++.+..+..+.. |.+++|+|++.+|++++. ||.|++|+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA-DGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC-CCeEEecC
Confidence            999999999888888887765 999999999999999999 99999996

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=9.9e-25  Score=191.96  Aligned_cols=163  Identities=18%  Similarity=0.254  Sum_probs=138.7

Q ss_pred             EecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCC-------eeeEEeccccCCeeEEEEccCC-CEEEEEeCCCc
Q psy3337         112 VFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKM-------KPLLHIEAHSKEIDDVDFSISG-EQIVSIAKDGK  182 (297)
Q Consensus       112 ~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~d~~  182 (297)
                      +. +|.+.|++++|+| ++++|++|+.|++|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.|++
T Consensus        71 l~-GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         71 LL-GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             Ee-CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            44 9999999999999 8899999999999999999754       3567889999999999999975 69999999999


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES  262 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~  262 (297)
                      |+|||+.+++.+..+..|..          .+..++|+|++..|++        ++.|+.|++||+++++.+..+..|..
T Consensus       150 VrIWDl~tg~~~~~l~~h~~----------~V~sla~spdG~lLat--------gs~Dg~IrIwD~rsg~~v~tl~~H~~  211 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSD----------QITSLEWNLDGSLLCT--------TSKDKKLNIIDPRDGTIVSSVEAHAS  211 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCC----------ceEEEEEECCCCEEEE--------ecCCCEEEEEECCCCcEEEEEecCCC
Confidence            99999999988887776641          2345889999999998        45599999999999999988888765


Q ss_pred             --eEEEEEcCCCCEEEEEe----cCCCeEEEEEeCCce
Q psy3337         263 --LSALAVRDDGRFVAVGT----MFTGSVFVYIAFSLQ  294 (297)
Q Consensus       263 --v~~~~~s~dg~~l~~~~----~~dg~i~vwd~~~~~  294 (297)
                        +..+.|.+++..|++++    . |+.|++||+++..
T Consensus       212 ~~~~~~~w~~~~~~ivt~G~s~s~-Dr~VklWDlr~~~  248 (493)
T PTZ00421        212 AKSQRCLWAKRKDLIITLGCSKSQ-QRQIMLWDTRKMA  248 (493)
T ss_pred             CcceEEEEcCCCCeEEEEecCCCC-CCeEEEEeCCCCC
Confidence              56788999888777654    4 7899999998654

>KOG0319|consensus

Probab=99.94  E-value=9e-26  Score=195.06  Aligned_cols=236  Identities=19%  Similarity=0.171  Sum_probs=187.4

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEee---ccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQ---MNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      |+...+..+.|+.|..-..+|+|++....-+   .|.+....-                                     
T Consensus       329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL-------------------------------------  371 (775)
T KOG0319|consen  329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSL-------------------------------------  371 (775)
T ss_pred             eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeee-------------------------------------
Confidence            4445677788999999999999966543211   111111110                                     


Q ss_pred             CCCCCCCCCcCCCCCCCceEEEE-eeCCC----eEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCe---
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRFG-FKTFD----SVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMK---  150 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~~-~~~~~----~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~---  150 (297)
                        .......|..+++.|+++++| +.++.    ++.... +|+..|.+++++..+ .+|++++.|+++++|++...+   
T Consensus       372 --~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~  448 (775)
T KOG0319|consen  372 --DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA  448 (775)
T ss_pred             --eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence              001223457789999999994 43332    223333 899999999998866 799999999999999997522   


Q ss_pred             --eeE----EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe
Q psy3337         151 --PLL----HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS  224 (297)
Q Consensus       151 --~~~----~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  224 (297)
                        .+.    ....|...|++++.+|+..++++|+.|++.+||++.......++.+|.          ..+++|.|+|..+
T Consensus       449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~----------RGvw~V~Fs~~dq  518 (775)
T KOG0319|consen  449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT----------RGVWCVSFSKNDQ  518 (775)
T ss_pred             ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc----------cceEEEEeccccc
Confidence              111    335799999999999999999999999999999999889999999986          2345688999999


Q ss_pred             EEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         225 RLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       225 ~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      .+++++.        |++|+||.+.+..++.++.+|.. |..+.|-.+|..|++++. ||.|++|++.+.++++
T Consensus       519 ~laT~Sg--------D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-dGliKlWnikt~eC~~  583 (775)
T KOG0319|consen  519 LLATCSG--------DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-DGLIKLWNIKTNECEM  583 (775)
T ss_pred             eeEeccC--------CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-CCcEEEEeccchhhhh
Confidence            9999666        99999999999999999999988 999999999999999999 9999999999988753

>KOG0973|consensus

Probab=99.94  E-value=7.5e-26  Score=203.15  Aligned_cols=229  Identities=15%  Similarity=0.167  Sum_probs=178.4

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +||..|+++|++||.|+.|..+.+|........                                               
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~-----------------------------------------------  104 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSG-----------------------------------------------  104 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCc-----------------------------------------------
Confidence            478889999999999999999999987641000                                               


Q ss_pred             CCCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          81 DKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                               ..-++..+..  +.+..+++..+. +|...|..++|+|++.+|++++.|++|.||+..+.+.+..+.+|..
T Consensus       105 ---------~~fgs~g~~~--~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen  105 ---------TVFGSTGGAK--NVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             ---------cccccccccc--ccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence                     0000000000  345557788888 9999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc---------
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN---------  231 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------  231 (297)
                      .|..+.|.|-|++||+-+.|++|++|++.+....+.+..+-..    ......|..+.|||||++|++...         
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~----~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE----SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh----CCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            9999999999999999999999999997765555555433210    001122345778888888776632         


Q ss_pred             -----------------------------------------C-----cccccCCCCeEEEEeCCCCceEEEecc-C-CCe
Q psy3337         232 -----------------------------------------P-----LAQNKRGISYVQQWDVDSGRLRLAREM-K-ESL  263 (297)
Q Consensus       232 -----------------------------------------~-----~~~~g~~d~~i~~wd~~~~~~~~~~~~-~-~~v  263 (297)
                                                               +     ++++|+.|+.|.||.....+++..... . ..|
T Consensus       249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI  328 (942)
T KOG0973|consen  249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI  328 (942)
T ss_pred             EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence                                                     0     467899999999999977776655443 2 339


Q ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         264 SALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       264 ~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ..++|+|||..|++++. ||+|.++.+...
T Consensus       329 ~DmsWspdG~~LfacS~-DGtV~~i~Fee~  357 (942)
T KOG0973|consen  329 VDMSWSPDGFSLFACSL-DGTVALIHFEEK  357 (942)
T ss_pred             eeeeEcCCCCeEEEEec-CCeEEEEEcchH
Confidence            99999999999999999 999999988653

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.2e-24  Score=192.53  Aligned_cols=180  Identities=12%  Similarity=0.149  Sum_probs=146.9

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCe--------eeEEeccccCC
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMK--------PLLHIEAHSKE  161 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~  161 (297)
                      .|+.++.+++ +......+..+. +|.+.|.+++|+|+ +++|++|+.|++|+|||+.++.        ++..+.+|...
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            5677888999 666666777777 99999999999996 7899999999999999997532        34567889999


Q ss_pred             eeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         162 IDDVDFSISGEQ-IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       162 v~~~~~sp~~~~-l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      |.+++|+|++.. |++++.|++|++||+++++.+..+..+           ..+..++|+|+|..|++.+        .|
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-----------~~V~SlswspdG~lLat~s--------~D  188 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-----------KKLSSLKWNIKGNLLSGTC--------VG  188 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-----------CcEEEEEECCCCCEEEEEe--------cC
Confidence            999999998875 578999999999999998876665422           1234588999999998844        49


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eE-----EEEEcCCCCEEEEEecCCC----eEEEEEeCC
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LS-----ALAVRDDGRFVAVGTMFTG----SVFVYIAFS  292 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~-----~~~~s~dg~~l~~~~~~dg----~i~vwd~~~  292 (297)
                      +.|++||+++++.+..+.+|.. +.     ...|++++.+|++++. |+    .|+|||+++
T Consensus       189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~-d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF-SKNNMREMKLWDLKN  249 (568)
T ss_pred             CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc-CCCCccEEEEEECCC
Confidence            9999999999999998988865 32     2345689999998887 64    799999985

>KOG0276|consensus

Probab=99.94  E-value=2.1e-25  Score=189.73  Aligned_cols=224  Identities=18%  Similarity=0.236  Sum_probs=179.1

Q ss_pred             eeeCCCccEEEeccCCceeeEEEeeEEe----eccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           5 VHSNGKNIYVVAGQENSNQLYKITAEFT----QMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         5 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      .|-..++-+++|..|-.+|||+.+....    +.|.+.++.-..               .               +..  
T Consensus        62 kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iav---------------H---------------Pt~--  109 (794)
T KOG0276|consen   62 KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAV---------------H---------------PTL--  109 (794)
T ss_pred             eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeee---------------c---------------CCC--
Confidence            4556788899999999999999987542    223333333210               0               000  


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-Ee-eCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GF-KTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~-~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                            | ...++++|.+|++ +. ....+.+++. ||+..|.+++|+| |.+.+|+++-|++|++|.+.+..+..++.+
T Consensus       110 ------P-~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g  181 (794)
T KOG0276|consen  110 ------P-YVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG  181 (794)
T ss_pred             ------C-eEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec
Confidence                  0 1347889999999 44 4456677777 9999999999999 568999999999999999999999999999


Q ss_pred             ccCCeeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         158 HSKEIDDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       158 ~~~~v~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      |...|+++.+-+  |..+|++|+.|.++++||.++..+++++.+|....          ..+.|+|.-..+++       
T Consensus       182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv----------s~v~fhp~lpiiis-------  244 (794)
T KOG0276|consen  182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV----------SFVFFHPELPIIIS-------  244 (794)
T ss_pred             cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc----------eEEEecCCCcEEEE-------
Confidence            999999999987  44699999999999999999999999999997432          23567888877777       


Q ss_pred             ccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEE
Q psy3337         236 NKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFV  287 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~v  287 (297)
                       |++||++++|+..+.++...+...-. +++++-.+.++.+++|.. +|.|.+
T Consensus       245 -gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D-eg~i~v  295 (794)
T KOG0276|consen  245 -GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD-EGSVTV  295 (794)
T ss_pred             -ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEecc-CCcEEE
Confidence             77899999999999888777776544 999999998889999987 666543

>KOG0296|consensus

Probab=99.94  E-value=5.3e-25  Score=176.32  Aligned_cols=170  Identities=21%  Similarity=0.239  Sum_probs=153.1

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lw  186 (297)
                      ..+.+|. .|.+.|.+++.+|+.++++||+.|..-.+|++.++.....+.+|.+.|+++.|+.+|.+||+|+.+|.|+||
T Consensus        55 dS~~tF~-~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   55 DSLVTFD-KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             cceeehh-hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            4567777 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEE
Q psy3337         187 NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSA  265 (297)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~  265 (297)
                      +..++.....+.....   .+.+       +.|+|.+..|++        |+.||.+.+|.+.++.....+.+|.. +++
T Consensus       134 ~~stg~~~~~~~~e~~---dieW-------l~WHp~a~illA--------G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~  195 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVE---DIEW-------LKWHPRAHILLA--------GSTDGSVWMWQIPSQALCKVMSGHNSPCTC  195 (399)
T ss_pred             EcccCceEEEeecccC---ceEE-------EEecccccEEEe--------ecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence            9999988777752211   2222       679999999988        77799999999999888889999887 999


Q ss_pred             EEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         266 LAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       266 ~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      -.|.|||+.++++.. ||+|++|++.+++++
T Consensus       196 G~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  196 GEFIPDGKRILTGYD-DGTIIVWNPKTGQPL  225 (399)
T ss_pred             ccccCCCceEEEEec-CceEEEEecCCCcee
Confidence            999999999999999 999999999999875

>KOG0281|consensus

Probab=99.94  E-value=2.1e-26  Score=183.53  Aligned_cols=179  Identities=13%  Similarity=0.264  Sum_probs=153.5

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      .+|..|++|++ |..+..++..+. ||++.|.|+.|  +.+.+++|+.|.+|++||+++++++.++-.|...|..+.|+.
T Consensus       211 VSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n  287 (499)
T KOG0281|consen  211 VSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN  287 (499)
T ss_pred             hcccccCceEEeccccHHHHHhhh-cCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC
Confidence            48999999999 888888898998 99999999988  466999999999999999999999999999999999999974


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCce---eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSL---SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                        .++++++.|.++.+||+.+...   ...+.+|..          .++.+.|+  .+++++++.        |.+|++|
T Consensus       288 --g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA----------aVNvVdfd--~kyIVsASg--------DRTikvW  345 (499)
T KOG0281|consen  288 --GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA----------AVNVVDFD--DKYIVSASG--------DRTIKVW  345 (499)
T ss_pred             --CEEEEecCCceeEEEeccCchHHHHHHHHhhhhh----------heeeeccc--cceEEEecC--------CceEEEE
Confidence              4999999999999999976542   234555531          22334443  558888555        9999999


Q ss_pred             eCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         247 DVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      ++.+++.++++.+|.. |.|+.+  .|+++++|+. |.+|++||+..|.+++
T Consensus       346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS-DntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS-DNTIRLWDIECGACLR  394 (499)
T ss_pred             eccceeeehhhhcccccceehhc--cCeEEEecCC-CceEEEEeccccHHHH
Confidence            9999999999999988 988887  6899999999 9999999999998764

>KOG0310|consensus

Probab=99.94  E-value=2.1e-25  Score=184.62  Aligned_cols=166  Identities=18%  Similarity=0.323  Sum_probs=137.1

Q ss_pred             EEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC-CCEEEEEeCCCcEEEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS-GEQIVSIAKDGKAFVW  186 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~d~~v~lw  186 (297)
                      +..+. +|+.+|..+.|+|++ ..|++|+.|+.+++||+.+......+.+|++.|.+.+|+|. +..++||+.||+|++|
T Consensus       103 LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  103 LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            44555 899999999999965 67889999999999999988876789999999999999994 5689999999999999


Q ss_pred             EcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCC-Ce
Q psy3337         187 NSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKE-SL  263 (297)
Q Consensus       187 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~-~v  263 (297)
                      |++.. ..+.++....           ++..+.+-|.|..+++++.         ..+++||+.+ ++.+..+..|. .|
T Consensus       182 DtR~~~~~v~elnhg~-----------pVe~vl~lpsgs~iasAgG---------n~vkVWDl~~G~qll~~~~~H~KtV  241 (487)
T KOG0310|consen  182 DTRSLTSRVVELNHGC-----------PVESVLALPSGSLIASAGG---------NSVKVWDLTTGGQLLTSMFNHNKTV  241 (487)
T ss_pred             EeccCCceeEEecCCC-----------ceeeEEEcCCCCEEEEcCC---------CeEEEEEecCCceehhhhhcccceE
Confidence            99866 5556664332           3344667899999999764         7899999996 55566555454 49


Q ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         264 SALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       264 ~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +|+++..++..|++|+. |+.|++||+.+.+.+
T Consensus       242 TcL~l~s~~~rLlS~sL-D~~VKVfd~t~~Kvv  273 (487)
T KOG0310|consen  242 TCLRLASDSTRLLSGSL-DRHVKVFDTTNYKVV  273 (487)
T ss_pred             EEEEeecCCceEeeccc-ccceEEEEccceEEE
Confidence            99999999999999999 999999998776643

>KOG0296|consensus

Probab=99.94  E-value=3.9e-25  Score=177.06  Aligned_cols=250  Identities=17%  Similarity=0.180  Sum_probs=185.9

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+-|+.+|.+||+|++++.++||++...........   +   .  ..+.+-+=..                       
T Consensus       110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~---e---~--~dieWl~WHp-----------------------  158 (399)
T KOG0296|consen  110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---E---V--EDIEWLKWHP-----------------------  158 (399)
T ss_pred             EEEEEccCceEEEecCCCccEEEEEcccCceEEEeec---c---c--CceEEEEecc-----------------------
Confidence            5777999999999999999999999987654321110   0   0  0000000000                       


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc-c
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH-S  159 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~  159 (297)
                          ..-...+|+.|+.+.+ .+.++...+.+. ||..++++-.|.|+|+.++++..||+|++|++.++.++..+... .
T Consensus       159 ----~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~  233 (399)
T KOG0296|consen  159 ----RAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG  233 (399)
T ss_pred             ----cccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence                0011558999999999 666666666776 99999999999999999999999999999999999998888643 3


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      ....++.++..+..++.|..++.+++-+..+|+.+....+..|..  ..-......++++.|....+     |+.+.|+.
T Consensus       234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l--~~~~e~~~esve~~~~ss~l-----pL~A~G~v  306 (399)
T KOG0296|consen  234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL--KPSQEELDESVESIPSSSKL-----PLAACGSV  306 (399)
T ss_pred             CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc--cccchhhhhhhhhccccccc-----chhhcccc
Confidence            467889999999999999999999999998998887765422211  00000111123333332222     33444888


Q ss_pred             CCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ||+|.|||+...+....+.+...|..+.|-+ ..+|++++. +|.|+.||.++|+++
T Consensus       307 dG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~-~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  307 DGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA-NGKVRQWDARTGQLK  361 (399)
T ss_pred             cceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc-CceEEeeeccccceE
Confidence            9999999999988888888777799999998 789999999 999999999999864

>KOG0289|consensus

Probab=99.94  E-value=5.3e-25  Score=179.92  Aligned_cols=188  Identities=18%  Similarity=0.223  Sum_probs=167.6

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      ..|+.|.++.+ |...++.+.++. ||.-.|+.+.|+|+...+++++.|..|++|.............|..+|+.+..+|
T Consensus       235 lTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~  313 (506)
T KOG0289|consen  235 LTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP  313 (506)
T ss_pred             eecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc
Confidence            36888978877 999999999998 9999999999999999999999999999999987777778889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|.||++++.|++....|++++..+.......        +.+.+.+.+|+|||..+.+        |..|+.|++||+.
T Consensus       314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------s~v~~ts~~fHpDgLifgt--------gt~d~~vkiwdlk  377 (506)
T KOG0289|consen  314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDET--------SDVEYTSAAFHPDGLIFGT--------GTPDGVVKIWDLK  377 (506)
T ss_pred             CCcEEEEecCCceEEEEEccCCcEEEEEeecc--------ccceeEEeeEcCCceEEec--------cCCCceEEEEEcC
Confidence            99999999999999999999998887765432        1123445789999988887        6779999999999


Q ss_pred             CCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         250 SGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       250 ~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++..+..|.+|.. |..++|+.+|.||++++. |+.|++||++..+..
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad-d~~V~lwDLRKl~n~  424 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAAD-DGSVKLWDLRKLKNF  424 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEec-CCeEEEEEehhhccc
Confidence            9999999999988 999999999999999999 999999999876643

>KOG0278|consensus

Probab=99.94  E-value=5.9e-26  Score=173.51  Aligned_cols=191  Identities=18%  Similarity=0.271  Sum_probs=158.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-eeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-PLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~  167 (297)
                      ..+++.|-+-++ +.-+|..+..+  .|..-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+-|
T Consensus        74 aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w  151 (334)
T KOG0278|consen   74 AASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW  151 (334)
T ss_pred             hhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence            557888889999 89999999988  788899999999999999999999999999998665 56789999999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC---------------
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP---------------  232 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---------------  232 (297)
                      ....+.|++++.|++|++||.+++..++++....|..           ++..+++|.+|.++...               
T Consensus       152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-----------SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs  220 (334)
T KOG0278|consen  152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-----------SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS  220 (334)
T ss_pred             eccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-----------ceeeccCCCEEEEecCceeEEeccccccceee
Confidence            9988999999999999999999999999887655332           12233333333322110               


Q ss_pred             -----------------cccccCCCCeEEEEeCCCCceEEEe-ccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         233 -----------------LAQNKRGISYVQQWDVDSGRLRLAR-EMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       233 -----------------~~~~g~~d~~i~~wd~~~~~~~~~~-~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                                       +.+.|.+|..++.||..+++.+..+ .+|. +|.|+.|+|||...++|++ ||+|++|....+
T Consensus       221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE-DGTirlWQt~~~  299 (334)
T KOG0278|consen  221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE-DGTIRLWQTTPG  299 (334)
T ss_pred             ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC-CceEEEEEecCC
Confidence                             3455888999999999999988886 5554 4999999999999999999 999999998665


Q ss_pred             e
Q psy3337         294 Q  294 (297)
Q Consensus       294 ~  294 (297)
                      +
T Consensus       300 ~  300 (334)
T KOG0278|consen  300 K  300 (334)
T ss_pred             C
Confidence            4

>KOG0282|consensus

Probab=99.93  E-value=4.9e-26  Score=188.17  Aligned_cols=187  Identities=15%  Similarity=0.152  Sum_probs=153.0

Q ss_pred             cCCCCCCCceEEE-EeeC-CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEE
Q psy3337          89 LNSIDSKEKNLRF-GFKT-FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD  166 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  166 (297)
                      |..+++.|+.|+| ++.. +.+++++. ||..+|..++|+++|..|++++.|+.|++||+++|+++..+.. ...++++.
T Consensus       229 LlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvk  306 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVK  306 (503)
T ss_pred             EEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeee
Confidence            3458899999999 6655 88999998 9999999999999999999999999999999999999988863 44689999


Q ss_pred             EccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         167 FSISG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       167 ~sp~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      |+|++ +.|++|+.|+.|+.||+++++.++++..|-          ..+..+.|-++|+++++.+        +|+.++|
T Consensus       307 f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL----------g~i~~i~F~~~g~rFissS--------Ddks~ri  368 (503)
T KOG0282|consen  307 FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL----------GAILDITFVDEGRRFISSS--------DDKSVRI  368 (503)
T ss_pred             cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh----------hheeeeEEccCCceEeeec--------cCccEEE
Confidence            99988 889999999999999999999988887664          2233477888888888854        4888999


Q ss_pred             EeCCCCceE----------------------------------------------EEeccCCC---eEEEEEcCCCCEEE
Q psy3337         246 WDVDSGRLR----------------------------------------------LAREMKES---LSALAVRDDGRFVA  276 (297)
Q Consensus       246 wd~~~~~~~----------------------------------------------~~~~~~~~---v~~~~~s~dg~~l~  276 (297)
                      |+.+..-.+                                              ..+.+|..   -..+.|||||++|+
T Consensus       369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~  448 (503)
T KOG0282|consen  369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC  448 (503)
T ss_pred             EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence            987632110                                              11223321   46789999999999


Q ss_pred             EEecCCCeEEEEEeCCceec
Q psy3337         277 VGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +|.. ||.+.+||..+-+.+
T Consensus       449 SGds-dG~v~~wdwkt~kl~  467 (503)
T KOG0282|consen  449 SGDS-DGKVNFWDWKTTKLV  467 (503)
T ss_pred             eecC-CccEEEeechhhhhh
Confidence            9999 999999998876543

>KOG0277|consensus

Probab=99.93  E-value=4e-25  Score=169.25  Aligned_cols=179  Identities=22%  Similarity=0.224  Sum_probs=149.2

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      .++.|++|++ +....+.++++. ||...|....|+| .++.+++++.|+++++||++.......+..|..++.++.|+.
T Consensus       122 tsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k  200 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK  200 (311)
T ss_pred             eeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence            5599999999 788888999998 9999999999999 579999999999999999986444445889999999999988


Q ss_pred             -CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeE-EEEeccCcccccCCCCeEEEE
Q psy3337         170 -SGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSR-LFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       170 -~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~~~~~g~~d~~i~~w  246 (297)
                       +.+.|++|+.|+.|++||++.- .++..+.+|.     +.     +..+.|||.... |++        .+.|-++++|
T Consensus       201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~-----~A-----VRkvk~Sph~~~lLaS--------asYDmT~riw  262 (311)
T KOG0277|consen  201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG-----LA-----VRKVKFSPHHASLLAS--------ASYDMTVRIW  262 (311)
T ss_pred             cCCcEEEecCCCceEEEEehhhccccceeecCCc-----eE-----EEEEecCcchhhHhhh--------ccccceEEec
Confidence             6778999999999999999854 4566776663     33     335778887644 444        5569999999


Q ss_pred             eCCC-CceEEEeccCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEEe
Q psy3337         247 DVDS-GRLRLAREMKES-LSALAVRD-DGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       247 d~~~-~~~~~~~~~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd~  290 (297)
                      |... ...+.+...|.. +..+.||+ ++.++++.+. |+.++||+.
T Consensus       263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW-De~l~Vw~p  308 (311)
T KOG0277|consen  263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW-DELLYVWNP  308 (311)
T ss_pred             ccccchhhhhhhhccceEEeccccccccCceeeeccc-ccceeeecc
Confidence            9985 445667778888 99999998 6789999999 999999984

>KOG0274|consensus

Probab=99.93  E-value=9.3e-25  Score=192.62  Aligned_cols=233  Identities=17%  Similarity=0.203  Sum_probs=183.5

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      .|..+.  +++++++..|+.+++|+........           .+..|+......-.-..                   
T Consensus       212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-----------~~l~GH~g~V~~l~~~~-------------------  259 (537)
T KOG0274|consen  212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-----------TRLVGHFGGVWGLAFPS-------------------  259 (537)
T ss_pred             hhheee--cCeEEecCCCceeEEeecccceEEE-----------eeccCCCCCceeEEEec-------------------
Confidence            455555  6788999999999999998776542           11111111111100000                   


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                          ..-+..+|+.|.++++ |..+|++...+. +|...|.++...+  ..+++|+.|.+|++|+++++..+..+.+|.+
T Consensus       260 ----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  260 ----GGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             ----CCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccc
Confidence                0111668999999999 999999999999 9999998887754  4788899999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      +|.++..+  +.++++|+.|++|++||+.++++++++.+|...          +..+.+.+. ..+++        |+.|
T Consensus       333 ~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~----------V~sl~~~~~-~~~~S--------gs~D  391 (537)
T KOG0274|consen  333 PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR----------VYSLIVDSE-NRLLS--------GSLD  391 (537)
T ss_pred             cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce----------EEEEEecCc-ceEEe--------eeec
Confidence            99999997  779999999999999999999999999998622          222333333 56666        6679


Q ss_pred             CeEEEEeCCCC-ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         241 SYVQQWDVDSG-RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       241 ~~i~~wd~~~~-~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      ++|++||+++. +++..+.+|.. +..+.+  .+++|++++. |++|++||..++++++
T Consensus       392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a-D~~Ik~WD~~~~~~~~  447 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSA-DGTIKLWDAEEGECLR  447 (537)
T ss_pred             cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccc-cccEEEeecccCceee
Confidence            99999999999 99999999988 655544  6789999999 9999999999988764

>KOG0313|consensus

Probab=99.93  E-value=3.3e-24  Score=172.62  Aligned_cols=184  Identities=20%  Similarity=0.288  Sum_probs=151.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEE-e--cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC------------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTV-F--AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP------------------  147 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~-~--~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~------------------  147 (297)
                      ..+++.|.++++ ..+.++..... .  .||...|.+++..++|..+++|+.|..|+||+..                  
T Consensus       162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~  241 (423)
T KOG0313|consen  162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ  241 (423)
T ss_pred             EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence            678999999999 55555443222 2  3999999999999999999999999999999931                  


Q ss_pred             -------CCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeC
Q psy3337         148 -------KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDS  220 (297)
Q Consensus       148 -------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  220 (297)
                             +..++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+.++....           .+.++..+
T Consensus       242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-----------sl~~i~~~  309 (423)
T KOG0313|consen  242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-----------SLNCISYS  309 (423)
T ss_pred             hhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-----------ceeEeecc
Confidence                   1235667889999999999997 6789999999999999999998887776542           23457788


Q ss_pred             CCCeEEEEeccCcccccCCCCeEEEEeCCCCc---eEEEeccCCC-eEEEEEcCCC-CEEEEEecCCCeEEEEEeCCce
Q psy3337         221 PKRSRLFTLANPLAQNKRGISYVQQWDVDSGR---LRLAREMKES-LSALAVRDDG-RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       221 ~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~---~~~~~~~~~~-v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |...+|++        |+.|..|++||.+++.   ....+.+|.. |.++.|+|.. ..|++|+. |+++++||+++-+
T Consensus       310 ~~~~Ll~~--------gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~-D~t~klWDvRS~k  379 (423)
T KOG0313|consen  310 PLSKLLAS--------GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY-DNTVKLWDVRSTK  379 (423)
T ss_pred             cccceeee--------cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec-CCeEEEEEeccCC
Confidence            98888888        6679999999999842   4567888888 9999999955 45778888 9999999999865

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=1.3e-23  Score=197.78  Aligned_cols=179  Identities=16%  Similarity=0.181  Sum_probs=145.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEe-cCCCEEEEEcCCCcEEEEeCCCCe-eeEEeccccCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLS-RNGDLMVTGGTDGHLRLWSFPKMK-PLLHIEAHSKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~  166 (297)
                      ..+++.|++|++ ++.++..+..+. .+ ..|.++.|+ ++|.+|++|+.|+.|++||+++.+ ++..+.+|...|.++.
T Consensus       591 L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~  668 (793)
T PLN00181        591 LASGSDDGSVKLWSINQGVSIGTIK-TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR  668 (793)
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEe-cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE
Confidence            568889999999 899898888886 44 578999996 478999999999999999998765 5678889999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCC------ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNG------SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      |. ++.+|++++.|++|++||++.+      ..+..+.+|..          ....++|+|++.+|++        |+.|
T Consensus       669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~----------~i~~v~~s~~~~~las--------gs~D  729 (793)
T PLN00181        669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN----------VKNFVGLSVSDGYIAT--------GSET  729 (793)
T ss_pred             Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC----------CeeEEEEcCCCCEEEE--------EeCC
Confidence            97 6789999999999999999743      45566665531          1234778999999988        5559


Q ss_pred             CeEEEEeCCCCceEEEe-------------ccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         241 SYVQQWDVDSGRLRLAR-------------EMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~-------------~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +.|++|+......+..+             ..+.. |.+++|+|++..|++|+. ||.|+||++
T Consensus       730 ~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~-dG~I~i~~~  792 (793)
T PLN00181        730 NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS-TGNIKILEM  792 (793)
T ss_pred             CEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC-CCcEEEEec
Confidence            99999998765433221             12333 999999999999999999 999999996

>KOG0294|consensus

Probab=99.93  E-value=5.3e-24  Score=167.73  Aligned_cols=191  Identities=15%  Similarity=0.229  Sum_probs=159.6

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC--EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  166 (297)
                      ..+|+.|.+|+| |+.+...+..+. .|.+.|+++.|.++-.  .|++|+.||.|.+|+....+.+..+++|.+.|+.++
T Consensus        56 ~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~ls  134 (362)
T KOG0294|consen   56 VASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLS  134 (362)
T ss_pred             EeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeE
Confidence            458999999999 999999999998 9999999999999764  899999999999999999999999999999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc---------------
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN---------------  231 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------  231 (297)
                      .+|.+++.++.+.|+.+++||+-.|+.-..+....-.           ..+.|+|.|.+++....               
T Consensus       135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-----------t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~  203 (362)
T KOG0294|consen  135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-----------TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR  203 (362)
T ss_pred             ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-----------eeeEEcCCCCEEEEEeccEEEEEecccHhHhh
Confidence            9999999999999999999999877654443322100           01445555554444322               


Q ss_pred             ----------------CcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEE--cCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         232 ----------------PLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAV--RDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       232 ----------------~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~--s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                                      ..+.+|.+++.|.+||..+..+...+.+|.. |-++.+  .|++.+|++++. ||.|+|||+..
T Consensus       204 ~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS-DG~I~vWd~~~  282 (362)
T KOG0294|consen  204 EIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS-DGFIKVWDIDM  282 (362)
T ss_pred             hhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc-CceEEEEEccc
Confidence                            1456688899999999999999999999987 988884  567899999999 99999999876


Q ss_pred             c
Q psy3337         293 L  293 (297)
Q Consensus       293 ~  293 (297)
                      .
T Consensus       283 ~  283 (362)
T KOG0294|consen  283 E  283 (362)
T ss_pred             c
Confidence            5

>KOG0274|consensus

Probab=99.93  E-value=3.2e-24  Score=189.20  Aligned_cols=224  Identities=17%  Similarity=0.225  Sum_probs=179.8

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeec----cccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQM----NGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +...+++|++|..|.++++|++....-..    +.....                                         
T Consensus       257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~-----------------------------------------  295 (537)
T KOG0274|consen  257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR-----------------------------------------  295 (537)
T ss_pred             EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE-----------------------------------------
Confidence            44468888999999999999987655321    111100                                         


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      -...-+.+..+|+.|.+|++ +++++..+.++. +|.+.|.++..+  +.++++|+.|++|++||+.+++++..+.+|..
T Consensus       296 ~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~  372 (537)
T KOG0274|consen  296 CLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG  372 (537)
T ss_pred             EEEccCceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc
Confidence            01111122456899999999 899999999997 799999999998  78999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      .|.++.+.+. ..+++|+.|++|++||+++. +++.++..|...    .        -.....++.|++        ++.
T Consensus       373 ~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~----v--------~~l~~~~~~Lvs--------~~a  431 (537)
T KOG0274|consen  373 RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL----V--------SSLLLRDNFLVS--------SSA  431 (537)
T ss_pred             eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc----c--------cccccccceeEe--------ccc
Confidence            9999988765 79999999999999999999 899999887522    1        112344666776        555


Q ss_pred             CCeEEEEeCCCCceEEEeccC--CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         240 ISYVQQWDVDSGRLRLAREMK--ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      |+.|++||..+++++..+.++  ..|..+++.  ...+++++. ||.+++||+++++.++
T Consensus       432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~-~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD-DGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec-CCeeEEEecccCchhh
Confidence            999999999999999999984  448888886  467777888 9999999999988653

>KOG0288|consensus

Probab=99.93  E-value=2.3e-24  Score=175.18  Aligned_cols=228  Identities=14%  Similarity=0.195  Sum_probs=177.7

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIED   85 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
                      |..++..++|++.|+.|++|++.....-            ....|+.-+.-.                     ..++...
T Consensus       227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~------------~TLsGHtdkVt~---------------------ak~~~~~  273 (459)
T KOG0288|consen  227 FDSDNKHVIAASNDKNLRLWNVDSLRLR------------HTLSGHTDKVTA---------------------AKFKLSH  273 (459)
T ss_pred             ecCCCceEEeecCCCceeeeeccchhhh------------hhhcccccceee---------------------ehhhccc
Confidence            7789999999999999999999875421            011111111100                     0001111


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      ..  -.+++.|.+|++ |+....+.+++..  ...+..|..+  ...+++|..|++|++||.++..+...+..+. .|++
T Consensus       274 ~~--vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtS  346 (459)
T KOG0288|consen  274 SR--VVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTS  346 (459)
T ss_pred             cc--eeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceee
Confidence            00  347899999999 9999988888863  2334455555  5578999999999999999999999888766 8999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      +..++++..|++++.|.++.+.|+++......+....      ....+.+..+.|||++.|+++        |+.||.|+
T Consensus       347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g------~k~asDwtrvvfSpd~~YvaA--------GS~dgsv~  412 (459)
T KOG0288|consen  347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG------FKCASDWTRVVFSPDGSYVAA--------GSADGSVY  412 (459)
T ss_pred             EeeccCCeEEeeecCCCceeeeecccccEEEEeeccc------cccccccceeEECCCCceeee--------ccCCCcEE
Confidence            9999999999999999999999999988888776542      112233567889999999999        77799999


Q ss_pred             EEeCCCCceEEEeccC--C-CeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         245 QWDVDSGRLRLAREMK--E-SLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~--~-~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                      ||++.++++...+...  . .|++++|+|.|..|++++. ++.+.+|
T Consensus       413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk-~~~v~lW  458 (459)
T KOG0288|consen  413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK-QKAVTLW  458 (459)
T ss_pred             EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC-CcceEec
Confidence            9999999998887653  2 3999999999999999999 9999999

>KOG0275|consensus

Probab=99.92  E-value=6.8e-26  Score=179.28  Aligned_cols=163  Identities=21%  Similarity=0.310  Sum_probs=145.3

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE--------eccccCCeeEEEEccCCCEEEEEeCCCcEEEE
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH--------IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lw  186 (297)
                      +....+.|..|||||++|++|+.||.|.+|+..+|+....        |.-+..+|.|+.|+.|..+|++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            6677788999999999999999999999999988875433        33477899999999999999999999999999


Q ss_pred             EcCCCceeeeee-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eE
Q psy3337         187 NSKNGSLSKELK-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LS  264 (297)
Q Consensus       187 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~  264 (297)
                      .+++|+++..|. .|..          .+.++.|+.|+..+++++.        |.++++.-+.+|+++..+.+|.. |+
T Consensus       291 ri~tG~ClRrFdrAHtk----------Gvt~l~FSrD~SqiLS~sf--------D~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTK----------GVTCLSFSRDNSQILSASF--------DQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             EEecchHHHHhhhhhcc----------CeeEEEEccCcchhhcccc--------cceEEEeccccchhHHHhcCcccccc
Confidence            999999999887 4532          2335778999999999666        99999999999999999999998 99


Q ss_pred             EEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         265 ALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       265 ~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+.|++||..+++++. ||+|++|+..+.+++
T Consensus       353 ~a~ft~dG~~iisaSs-DgtvkvW~~KtteC~  383 (508)
T KOG0275|consen  353 EATFTDDGHHIISASS-DGTVKVWHGKTTECL  383 (508)
T ss_pred             ceEEcCCCCeEEEecC-CccEEEecCcchhhh
Confidence            9999999999999999 999999999988765

>KOG2096|consensus

Probab=99.92  E-value=4.5e-24  Score=168.48  Aligned_cols=266  Identities=16%  Similarity=0.152  Sum_probs=175.1

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhh--------------ccC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAK--------------QKG   66 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--------------~~~   66 (297)
                      ++|+-|+.+|++|+++..|+.+|||++....+..|.-...+.    +.. +..+..-++.-+.              +..
T Consensus        89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~d-hpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYD-HPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCC-CceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            467779999999999999999999999875443321111111    000 1111111100000              011


Q ss_pred             CCcccccccCCCCCC---------------CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCE
Q psy3337          67 GKKEKSNEKGKNKKD---------------KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDL  131 (297)
Q Consensus        67 ~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  131 (297)
                      .+++.....+-.+.+               ...+......+.+.|..|.||--.|+.+..+. .....-+..++||+|++
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~id-tnq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSID-TNQSSNYDAAVSPDGRF  242 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeec-cccccccceeeCCCCcE
Confidence            111111111111111               12222222336778888999444499998887 44445568899999999


Q ss_pred             EEEEcCCCcEEEEeCC---CC-----eeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC----Cc---eeee
Q psy3337         132 MVTGGTDGHLRLWSFP---KM-----KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN----GS---LSKE  196 (297)
Q Consensus       132 l~s~~~d~~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~----~~---~~~~  196 (297)
                      +++++..-.|++|.+-   .|     ..+..+++|...|..++|+|+.+.+++.+.||+++|||..-    ++   .+.+
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~  322 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE  322 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc
Confidence            9999999999999862   33     24568899999999999999999999999999999999742    11   2222


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-CCC-eEEEEEcCCCCE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-KES-LSALAVRDDGRF  274 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~-v~~~~~s~dg~~  274 (297)
                      ...  |..    .....--.++.+|+|+.|+...         ...|+++..++|+....++. |+. |.+++|+++|++
T Consensus       323 g~~--pl~----aag~~p~RL~lsP~g~~lA~s~---------gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  323 GSA--PLH----AAGSEPVRLELSPSGDSLAVSF---------GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY  387 (420)
T ss_pred             CCc--chh----hcCCCceEEEeCCCCcEEEeec---------CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence            211  100    0000011477899999888754         46899999999888777654 665 999999999999


Q ss_pred             EEEEecCCCeEEEEE
Q psy3337         275 VAVGTMFTGSVFVYI  289 (297)
Q Consensus       275 l~~~~~~dg~i~vwd  289 (297)
                      +++++  |..++++-
T Consensus       388 ~atcG--dr~vrv~~  400 (420)
T KOG2096|consen  388 IATCG--DRYVRVIR  400 (420)
T ss_pred             Eeeec--ceeeeeec
Confidence            99999  78898876

>KOG0308|consensus

Probab=99.92  E-value=3.4e-24  Score=183.10  Aligned_cols=236  Identities=14%  Similarity=0.179  Sum_probs=183.5

Q ss_pred             CCCccEEEeccCCceeeEEEeeEEeecccc-ccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCCC
Q psy3337           8 NGKNIYVVAGQENSNQLYKITAEFTQMNGV-VKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDP   86 (297)
Q Consensus         8 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (297)
                      +.++||.+||.|+.+++|++.......... .+.-+.+      .-+--...-...+.                      
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~H------sDWVNDiiL~~~~~----------------------   86 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHH------SDWVNDIILCGNGK----------------------   86 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhh------HhHHhhHHhhcCCC----------------------
Confidence            567789999999999999998765431111 0000000      00000000000000                      


Q ss_pred             CCcCCCCCCCceEEE-EeeCC--CeEEEEecCCCCcEEEEEE-ecCCCEEEEEcCCCcEEEEeCCCCee--e--------
Q psy3337          87 PILNSIDSKEKNLRF-GFKTF--DSVQTVFAGSESLQRVVRL-SRNGDLMVTGGTDGHLRLWSFPKMKP--L--------  152 (297)
Q Consensus        87 ~~l~~~~~~d~~i~~-~~~~~--~~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~~d~~i~iwd~~~~~~--~--------  152 (297)
                        -..+.+.|-+|++ +...+  -+..++. .|.++|.|+++ .++...+|+||.|+.|.+||++++..  +        
T Consensus        87 --tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 --TLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             --ceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence              1567889999999 66665  4667777 89999999999 78889999999999999999987622  2        


Q ss_pred             EEec-cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         153 LHIE-AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       153 ~~~~-~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      ..+. ++...|++++.++.|..|++|+..+.+++||.++.+.+..+.+|.....          .+..++||..++++  
T Consensus       164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr----------~ll~~dDGt~~ls~--  231 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR----------VLLVNDDGTRLLSA--  231 (735)
T ss_pred             ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE----------EEEEcCCCCeEeec--
Confidence            2233 7888999999999999999999999999999999999999999974431          24468999999994  


Q ss_pred             CcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         232 PLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       232 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                            +.|++|++||+...+++.++..|.. |+++..+|+=..+.+|+. ||.|..-|+++.
T Consensus       232 ------sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~  287 (735)
T KOG0308|consen  232 ------SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNP  287 (735)
T ss_pred             ------CCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC-CCcEEecccCCc
Confidence                  5599999999999999999999988 999999999999999999 999999998873

>KOG1274|consensus

Probab=99.92  E-value=1.3e-23  Score=185.87  Aligned_cols=239  Identities=16%  Similarity=0.188  Sum_probs=187.2

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIED   85 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
                      +.++|..++++|.|+.+++|+.......  ++.+...+.          .                        .-....
T Consensus        21 ~d~~gefi~tcgsdg~ir~~~~~sd~e~--P~ti~~~g~----------~------------------------v~~ia~   64 (933)
T KOG1274|consen   21 YDPDGEFICTCGSDGDIRKWKTNSDEEE--PETIDISGE----------L------------------------VSSIAC   64 (933)
T ss_pred             EcCCCCEEEEecCCCceEEeecCCcccC--CchhhccCc----------e------------------------eEEEee
Confidence            7788999999999999999998876421  122110000          0                        000000


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      ..-...+++.+++|.+ ....++.-..+. ..+-++++++|+.+|+++|.|+.|-.|++.++.+......+.+|.++|.+
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence            0001567889999998 777776544444 56778999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      +.|+|.+++||+++.||.|++||+.++....++..-.+......  ......++|+|++..++....        |+.|.
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~--s~i~~~~aW~Pk~g~la~~~~--------d~~Vk  213 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL--SRICTRLAWHPKGGTLAVPPV--------DNTVK  213 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc--cceeeeeeecCCCCeEEeecc--------CCeEE
Confidence            99999999999999999999999999988887765544321111  222345899999888888665        99999


Q ss_pred             EEeCCCCceEEEeccC--CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         245 QWDVDSGRLRLAREMK--ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~--~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +|+..++.....+...  .. +..++|+|+|+|||+++. ||.|.|||+.+
T Consensus       214 vy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~-~g~I~vWnv~t  263 (933)
T KOG1274|consen  214 VYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL-DGQILVWNVDT  263 (933)
T ss_pred             EEccCCceeheeecccccccceEEEEEcCCCcEEeeecc-CCcEEEEeccc
Confidence            9999998888777652  33 899999999999999999 99999999986

>KOG0288|consensus

Probab=99.92  E-value=6.8e-25  Score=178.22  Aligned_cols=234  Identities=16%  Similarity=0.245  Sum_probs=180.2

Q ss_pred             eeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCC
Q psy3337           5 VHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIE   84 (297)
Q Consensus         5 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
                      .|-++...|++||+|..|++|++..+..+.+....-..       |.-.+-.                         ...
T Consensus       182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-------g~it~~d-------------------------~d~  229 (459)
T KOG0288|consen  182 EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-------GNITSID-------------------------FDS  229 (459)
T ss_pred             EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC-------CCcceee-------------------------ecC
Confidence            34455588999999999999999877633211111000       0011110                         111


Q ss_pred             CCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCee
Q psy3337          85 DPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID  163 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  163 (297)
                      + .....+.+.|+.+++ +....+...++. ||.+.|+++.|......+++|+.|.+|++||+....+..++.. ...+.
T Consensus       230 ~-~~~~iAas~d~~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cn  306 (459)
T KOG0288|consen  230 D-NKHVIAASNDKNLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCN  306 (459)
T ss_pred             C-CceEEeecCCCceeeeeccchhhhhhhc-ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-ccccc
Confidence            1 111447889999999 888899999999 9999999999998877799999999999999998888776653 34566


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         164 DVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|..+  ...++++-.|++|+.||+++..+......+.           ++.++..++++..|++.+.        |.++
T Consensus       307 DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-----------~vtSl~ls~~g~~lLsssR--------Ddtl  365 (459)
T KOG0288|consen  307 DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-----------RVTSLDLSMDGLELLSSSR--------DDTL  365 (459)
T ss_pred             ceEec--ceeeeecccccceEEEeccCCceeeEeecCc-----------ceeeEeeccCCeEEeeecC--------CCce
Confidence            67665  4568888999999999999998888776543           3445778999999999655        9999


Q ss_pred             EEEeCCCCceEEEeccC-----CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         244 QQWDVDSGRLRLAREMK-----ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~-----~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .+.|+++.+....+...     ...+.+.|||++.|+++|+. ||.|+||++.++++
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-dgsv~iW~v~tgKl  421 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-DGSVYIWSVFTGKL  421 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-CCcEEEEEccCceE
Confidence            99999998888777543     23889999999999999999 99999999999875

>KOG0292|consensus

Probab=99.92  E-value=7e-24  Score=186.82  Aligned_cols=246  Identities=13%  Similarity=0.134  Sum_probs=180.3

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIED   85 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
                      |++..--++++=-.+.+|+|+.+..-.-.  ..       .+..|+.+-  ...                        .+
T Consensus        17 FHP~rPwILtslHsG~IQlWDYRM~tli~--rF-------deHdGpVRg--v~F------------------------H~   61 (1202)
T KOG0292|consen   17 FHPKRPWILTSLHSGVIQLWDYRMGTLID--RF-------DEHDGPVRG--VDF------------------------HP   61 (1202)
T ss_pred             cCCCCCEEEEeecCceeeeehhhhhhHHh--hh-------hccCCccce--eee------------------------cC
Confidence            66666666777789999999987654321  00       001111111  111                        11


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      ..-+..+|++|-.|++ +..+.+++.++. ||.+.|..+.|++.-.++++++.|.+|+||+..+.+++..+.+|...|.|
T Consensus        62 ~qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc  140 (1202)
T KOG0292|consen   62 TQPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC  140 (1202)
T ss_pred             CCCeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence            1223679999999999 888999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeee----ee----ccC--------CC-CceEEE--EeeeeeeeeeCCCCeE
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE----LK----WNT--------PD-NIKYLF--KRCRYGLVEDSPKRSR  225 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~----~~----~~~--------~~-~~~~~~--~~~~~~~~~~s~~~~~  225 (297)
                      ..|+|...+++++|-|.+|++||+..-+.-..    +.    ++.        ++ ....+.  +...++-.+|+|.-..
T Consensus       141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl  220 (1202)
T KOG0292|consen  141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL  220 (1202)
T ss_pred             eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence            99999999999999999999999852211110    00    000        00 000000  0112233556666655


Q ss_pred             EEEeccCcccccCCCCeEEEEeCCCCc--eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         226 LFTLANPLAQNKRGISYVQQWDVDSGR--LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~wd~~~~~--~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +++        |++|+.|++|.+...+  .+.+..+|.. |.++-|+|....|++.++ |++|+|||+...+.+
T Consensus       221 iVS--------G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE-DksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  221 IVS--------GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE-DKSIRVWDMTKRTSV  285 (1202)
T ss_pred             EEe--------cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC-CccEEEEecccccce
Confidence            555        8889999999998644  3455677766 999999999999999999 999999999876654

>KOG0306|consensus

Probab=99.92  E-value=1.3e-23  Score=182.28  Aligned_cols=235  Identities=19%  Similarity=0.197  Sum_probs=182.2

Q ss_pred             eeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCC
Q psy3337           4 DVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKI   83 (297)
Q Consensus         4 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
                      +-|=+++++++.|+-.+.++||++-+...-...         ++..|--+--...+.++.                    
T Consensus       418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti---------~AHdgaIWsi~~~pD~~g--------------------  468 (888)
T KOG0306|consen  418 SKFVPGDRYIVLGTKNGELQVFDLASASLVETI---------RAHDGAIWSISLSPDNKG--------------------  468 (888)
T ss_pred             EEecCCCceEEEeccCCceEEEEeehhhhhhhh---------hccccceeeeeecCCCCc--------------------
Confidence            336677788888888888888888664432100         001111111111111111                    


Q ss_pred             CCCCCcCCCCCCCceEEE-Eee-----CCCeEEEEe------cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee
Q psy3337          84 EDPPILNSIDSKEKNLRF-GFK-----TFDSVQTVF------AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP  151 (297)
Q Consensus        84 ~~~~~l~~~~~~d~~i~~-~~~-----~~~~~~~~~------~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  151 (297)
                            ...++.|.+|++ +..     .|...+.+.      ..-+..|.|+++||||++||.+--|++|++|-+.+.+.
T Consensus       469 ------~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF  542 (888)
T KOG0306|consen  469 ------FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF  542 (888)
T ss_pred             ------eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence                  558899999999 432     122211111      14567899999999999999999999999999999999


Q ss_pred             eEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         152 LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       152 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      ...+.+|.-+|.|+..+||+++++||+.|.+|++|-+.=|.+-+.+-+|...          +..+.|-|+...+++++-
T Consensus       543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS----------vm~V~F~P~~~~FFt~gK  612 (888)
T KOG0306|consen  543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS----------VMSVQFLPKTHLFFTCGK  612 (888)
T ss_pred             eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc----------eeEEEEcccceeEEEecC
Confidence            9999999999999999999999999999999999999999998888877522          223778999999999665


Q ss_pred             CcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         232 PLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       232 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                              |+.|+-||-...+++..+.+|.. |++++.+|+|.++++++. |..|++|.-..
T Consensus       613 --------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh-D~sIRlwE~td  665 (888)
T KOG0306|consen  613 --------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-DKSIRLWERTD  665 (888)
T ss_pred             --------cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC-CceeEeeeccC
Confidence                    99999999999999999998876 999999999999999999 99999998644

>KOG0645|consensus

Probab=99.92  E-value=5.4e-23  Score=158.93  Aligned_cols=163  Identities=17%  Similarity=0.204  Sum_probs=139.7

Q ss_pred             EEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCC---eeeEEe-ccccCCeeEEEEccCCCEEEEEeCCCcE
Q psy3337         109 VQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKM---KPLLHI-EAHSKEIDDVDFSISGEQIVSIAKDGKA  183 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~d~~v  183 (297)
                      ++.+. +|.+++..++|+|- |..||+|+.|+.|++|+...+   .+...+ .+|+..|.+++|+|.|++|++++.|.++
T Consensus         7 ~~~~~-gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    7 EQKLS-GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             EEeec-CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            45555 99999999999998 899999999999999998743   333333 3699999999999999999999999999


Q ss_pred             EEEEcCC--CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC---CceEEEec
Q psy3337         184 FVWNSKN--GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS---GRLRLARE  258 (297)
Q Consensus       184 ~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~---~~~~~~~~  258 (297)
                      .||.-..  .+++.++.+|..          .+..++|+++|.+|++++.        |..+.||.+..   .++...++
T Consensus        86 ~Iw~k~~~efecv~~lEGHEn----------EVK~Vaws~sG~~LATCSR--------DKSVWiWe~deddEfec~aVL~  147 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHEN----------EVKCVAWSASGNYLATCSR--------DKSVWIWEIDEDDEFECIAVLQ  147 (312)
T ss_pred             EEeecCCCceeEEeeeecccc----------ceeEEEEcCCCCEEEEeeC--------CCeEEEEEecCCCcEEEEeeec
Confidence            9997653  367888888863          2445889999999999766        99999999985   45778888


Q ss_pred             cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         259 MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       259 ~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .|.. |..+.|+|...+|++++. |.+|++|+-.
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SY-DnTIk~~~~~  180 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSY-DNTIKVYRDE  180 (312)
T ss_pred             cccccccEEEEcCCcceeEEecc-CCeEEEEeec
Confidence            8887 999999999999999999 9999999865

>KOG0643|consensus

Probab=99.92  E-value=1.9e-23  Score=161.16  Aligned_cols=175  Identities=17%  Similarity=0.230  Sum_probs=143.1

Q ss_pred             cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         114 AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       114 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      .||+.+++.+.++.+|.+|++|+.|.+..+|-..+|+.+.++.+|.+.|++++.+-+.+++++|+.|.+++|||+.+|+.
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~   86 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ   86 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence            39999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             eeeeeccCCCC--------ceEEEEe-----------------------------------eeeeeeeeCCCCeEEEEec
Q psy3337         194 SKELKWNTPDN--------IKYLFKR-----------------------------------CRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       194 ~~~~~~~~~~~--------~~~~~~~-----------------------------------~~~~~~~~s~~~~~l~~~~  230 (297)
                      +..++...|..        ....+..                                   ..+...-|.|-++      
T Consensus        87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~------  160 (327)
T KOG0643|consen   87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE------  160 (327)
T ss_pred             EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC------
Confidence            88876544221        0011000                                   0011122333333      


Q ss_pred             cCcccccCCCCeEEEEeCCCCc-eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         231 NPLAQNKRGISYVQQWDVDSGR-LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                        ++++|.++|.|.+||+++|+ .+.....|.. |+.+++++|..++++++. |.+-++||+.+++.+|
T Consensus       161 --~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~K  226 (327)
T KOG0643|consen  161 --TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLK  226 (327)
T ss_pred             --EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc-CccceeeeccceeeEE
Confidence              45568889999999999974 4555566766 999999999999999999 9999999999988764

>KOG0318|consensus

Probab=99.92  E-value=1.8e-22  Score=168.85  Aligned_cols=197  Identities=18%  Similarity=0.238  Sum_probs=147.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEe--cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE-------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVF--AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL-------------  153 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-------------  153 (297)
                      ..+.+.|+++.+ |-.+|+.+..+.  .+|.+.|.+++|+||+..|++++.|.+++|||+.+.+.+.             
T Consensus       205 Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv  284 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV  284 (603)
T ss_pred             EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence            567888999999 999999998886  5799999999999999999999999999999975543322             


Q ss_pred             ------------------------------EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee---------
Q psy3337         154 ------------------------------HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS---------  194 (297)
Q Consensus       154 ------------------------------~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~---------  194 (297)
                                                    .+.+|...|+++..+|++.+|++|+.||.|.-||..++..-         
T Consensus       285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n  364 (603)
T KOG0318|consen  285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN  364 (603)
T ss_pred             EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccc
Confidence                                          23579999999999999999999999999999998765321         


Q ss_pred             --eeeeccC----------------------------------CC-------CceEEEEee-------------------
Q psy3337         195 --KELKWNT----------------------------------PD-------NIKYLFKRC-------------------  212 (297)
Q Consensus       195 --~~~~~~~----------------------------------~~-------~~~~~~~~~-------------------  212 (297)
                        ..+....                                  |.       +...++.+.                   
T Consensus       365 qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y  444 (603)
T KOG0318|consen  365 QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGY  444 (603)
T ss_pred             eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccc
Confidence              1111100                                  00       000000000                   


Q ss_pred             eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE--EEeccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         213 RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR--LAREMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       213 ~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~--~~~~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      ....++++|++..++.        |..|+.|++|.+..+...  ..+..|. .|+++++|||+.+|+++.. .+.+.+||
T Consensus       445 ~~s~vAv~~~~~~vaV--------GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd  515 (603)
T KOG0318|consen  445 ESSAVAVSPDGSEVAV--------GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYD  515 (603)
T ss_pred             ccceEEEcCCCCEEEE--------ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEE
Confidence            0012555666666655        777999999999875432  2333344 4999999999999999999 99999999


Q ss_pred             eCCcee
Q psy3337         290 AFSLQM  295 (297)
Q Consensus       290 ~~~~~~  295 (297)
                      +.+.+.
T Consensus       516 ~~s~~~  521 (603)
T KOG0318|consen  516 VASREV  521 (603)
T ss_pred             cccCce
Confidence            988653

>KOG0313|consensus

Probab=99.92  E-value=3.1e-23  Score=167.04  Aligned_cols=163  Identities=15%  Similarity=0.218  Sum_probs=137.3

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lw  186 (297)
                      .++.++. ||..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...+.++..+|..++|++|+.|..+++|
T Consensus       251 ~P~vtl~-GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  251 TPLVTLE-GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             CceEEec-ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeec
Confidence            4567777 9999999999998 66899999999999999999998888875 4579999999999999999999999999


Q ss_pred             EcCCCc---eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc-eEEEeccCCC
Q psy3337         187 NSKNGS---LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR-LRLAREMKES  262 (297)
Q Consensus       187 d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~  262 (297)
                      |.+++.   ..+++.+|.    .      .+..+.|+|...+++.       +|+.|+++++||+++.. ++..+.+|..
T Consensus       328 DPR~~~gs~v~~s~~gH~----n------wVssvkwsp~~~~~~~-------S~S~D~t~klWDvRS~k~plydI~~h~D  390 (423)
T KOG0313|consen  328 DPRTGDGSVVSQSLIGHK----N------WVSSVKWSPTNEFQLV-------SGSYDNTVKLWDVRSTKAPLYDIAGHND  390 (423)
T ss_pred             CCCCCCCceeEEeeecch----h------hhhheecCCCCceEEE-------EEecCCeEEEEEeccCCCcceeeccCCc
Confidence            999763   345566664    2      3345788998876655       37789999999999966 8889988877


Q ss_pred             -eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         263 -LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       263 -v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                       |.++.|+ ++..|++|+. |.+|+++.-.
T Consensus       391 Kvl~vdW~-~~~~IvSGGa-D~~l~i~~~~  418 (423)
T KOG0313|consen  391 KVLSVDWN-EGGLIVSGGA-DNKLRIFKGS  418 (423)
T ss_pred             eEEEEecc-CCceEEeccC-cceEEEeccc
Confidence             9999997 5789999999 9999998754

>KOG0277|consensus

Probab=99.91  E-value=5.9e-24  Score=162.91  Aligned_cols=184  Identities=14%  Similarity=0.157  Sum_probs=147.9

Q ss_pred             CCCCCCceEEE-Ee-eCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          91 SIDSKEKNLRF-GF-KTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        91 ~~~~~d~~i~~-~~-~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      .+.+.||+++| |. ....+++.++ .|...|.++.|++ .++.+++++.|++|++|+...++.+.++.+|...|...+|
T Consensus        77 ~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~  155 (311)
T KOG0277|consen   77 IAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAF  155 (311)
T ss_pred             EEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEec
Confidence            36788999999 63 3345677777 9999999999999 4577888899999999999999999999999999999999


Q ss_pred             cc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC-CeEEEEeccCcccccCCCCeEEE
Q psy3337         168 SI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK-RSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       168 sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +| ..++|++++.|+++++||++.......+..|.     ..+.     +..|+.- ...|++        |+.|+.|++
T Consensus       156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-----~Eil-----~cdw~ky~~~vl~T--------g~vd~~vr~  217 (311)
T KOG0277|consen  156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-----SEIL-----CCDWSKYNHNVLAT--------GGVDNLVRG  217 (311)
T ss_pred             CCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-----ceeE-----eecccccCCcEEEe--------cCCCceEEE
Confidence            99 67899999999999999998543333366664     1112     2334543 445555        666999999


Q ss_pred             EeCCC-CceEEEeccCCC-eEEEEEcCCC-CEEEEEecCCCeEEEEEeCCce
Q psy3337         246 WDVDS-GRLRLAREMKES-LSALAVRDDG-RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       246 wd~~~-~~~~~~~~~~~~-v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ||++. ..++..+.+|+- |+.+.|||.. ..|++++. |=+++|||.....
T Consensus       218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY-DmT~riw~~~~~d  268 (311)
T KOG0277|consen  218 WDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY-DMTVRIWDPERQD  268 (311)
T ss_pred             EehhhccccceeecCCceEEEEEecCcchhhHhhhccc-cceEEecccccch
Confidence            99998 667888888887 9999999964 56788888 9999999987543

>KOG0283|consensus

Probab=99.91  E-value=1e-23  Score=185.05  Aligned_cols=161  Identities=19%  Similarity=0.373  Sum_probs=137.2

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC----------------------------------------------
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK----------------------------------------------  148 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----------------------------------------------  148 (297)
                      .|.+.|+++.||+||+|||+||.|+.|+||.+..                                              
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7999999999999999999999999999998533                                              


Q ss_pred             --------------CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeee
Q psy3337         149 --------------MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRY  214 (297)
Q Consensus       149 --------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (297)
                                    .++++.|.+|.+.|.+|.||.+ .+|++++.|.+|+||++....++..|...     .+      +
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-----df------V  412 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHN-----DF------V  412 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecC-----Ce------e
Confidence                          0123346789999999999965 58999999999999999999999988643     23      2


Q ss_pred             eeeeeCCC-CeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         215 GLVEDSPK-RSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       215 ~~~~~s~~-~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      .+|+|+|. .+|+++        |+-|+.|+||++...+.+.-...++-|++++|+|||++.++|+. +|.+++|+....
T Consensus       413 TcVaFnPvDDryFiS--------GSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~l  483 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFIS--------GSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGL  483 (712)
T ss_pred             EEEEecccCCCcEee--------cccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe-ccEEEEEEccCC
Confidence            34889994 566666        77899999999998888877777777999999999999999999 999999999877


Q ss_pred             eec
Q psy3337         294 QMC  296 (297)
Q Consensus       294 ~~~  296 (297)
                      +.+
T Consensus       484 k~~  486 (712)
T KOG0283|consen  484 KLV  486 (712)
T ss_pred             eEE
Confidence            653

>KOG0641|consensus

Probab=99.91  E-value=2.2e-21  Score=146.76  Aligned_cols=244  Identities=13%  Similarity=0.151  Sum_probs=184.6

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      -|..+++.|..++++..|..+++..++.+..+......+-.++    .|-.  |.                   ..--.+
T Consensus        93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh----dgti--rd-------------------l~fld~  147 (350)
T KOG0641|consen   93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH----DGTI--RD-------------------LAFLDD  147 (350)
T ss_pred             EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeec----CCce--ee-------------------eEEecC
Confidence            3777899999999999999999999887653321111110000    0000  00                   001112


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc--c
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA--H  158 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~  158 (297)
                      +.....+|...|..|..|++ |..+|+.++.+. ||++.|.++ ++-+|-++++|+.|.+|++||++-..++.++..  |
T Consensus       148 ~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~  225 (350)
T KOG0641|consen  148 PESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH  225 (350)
T ss_pred             CCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence            34445567778889999999 999999999999 999998776 344688999999999999999998777776642  2


Q ss_pred             -----cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         159 -----SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       159 -----~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                           ...|.+++..|.|++|++|-.|....+||++.+++++.+..|..+          +.++.|+|...++++++.  
T Consensus       226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad----------ir~vrfsp~a~yllt~sy--  293 (350)
T KOG0641|consen  226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD----------IRCVRFSPGAHYLLTCSY--  293 (350)
T ss_pred             CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc----------eeEEEeCCCceEEEEecc--
Confidence                 356999999999999999999999999999999999999877532          345778999999999555  


Q ss_pred             ccccCCCCeEEEEeCCCC--c--eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         234 AQNKRGISYVQQWDVDSG--R--LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~~--~--~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                            |..|++-|+...  .  .+.....|.. +..+.|+|..-.+++.+. |.++.+|-+.
T Consensus       294 ------d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa-dkt~tlwa~~  349 (350)
T KOG0641|consen  294 ------DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA-DKTATLWALN  349 (350)
T ss_pred             ------cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC-cceEEEeccC
Confidence                  999999999851  1  2223333444 888999999999999999 9999999764

>KOG0973|consensus

Probab=99.90  E-value=5.1e-23  Score=185.08  Aligned_cols=154  Identities=19%  Similarity=0.285  Sum_probs=131.7

Q ss_pred             eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC------------------CeeeEEeccccCCeeEEEEcc
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK------------------MKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      .+.+.. .|.+.|+|+.|+|||++||+|+.|+.|.||....                  .+.+..+.+|...|.+++|+|
T Consensus        61 ~l~~m~-~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   61 HLCTMD-DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hheeec-cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            355555 8999999999999999999999999999998652                  235678899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      ++.+|++++.|++|.+|+.++.+.+..+.+|..          .+..+.|.|-|+++++.+.        |++|++|.+.
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s----------~VKGvs~DP~Gky~ASqsd--------Drtikvwrt~  201 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS----------LVKGVSWDPIGKYFASQSD--------DRTLKVWRTS  201 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeecccc----------cccceEECCccCeeeeecC--------CceEEEEEcc
Confidence            999999999999999999999999999999862          1234789999999999766        9999999988


Q ss_pred             CCceEEEeccC------CC-eEEEEEcCCCCEEEEEec
Q psy3337         250 SGRLRLAREMK------ES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       250 ~~~~~~~~~~~------~~-v~~~~~s~dg~~l~~~~~  280 (297)
                      +..+...+..+      .. .+.+.|||||.+|++...
T Consensus       202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             cceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            87776666543      22 889999999999998754

>KOG1407|consensus

Probab=99.90  E-value=1.8e-21  Score=149.90  Aligned_cols=235  Identities=12%  Similarity=0.120  Sum_probs=184.4

Q ss_pred             eeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC---
Q psy3337           5 VHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD---   81 (297)
Q Consensus         5 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---   81 (297)
                      .+.-+|..|+++..|..+.+|++.............                                   +....+   
T Consensus        27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~g-----------------------------------h~~svdql~   71 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRG-----------------------------------HTDSVDQLC   71 (313)
T ss_pred             EEcccCceeeecccCCceEEEEecchhhhhhhcccC-----------------------------------CCcchhhhe
Confidence            366789999999999999999997763321100000                                   110111   


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      =.+..|-+..+.+.|.+|++ |...+++...+. ...+. .-+.|+|+|++++.++.|..|.+.|.++.+.....+ ...
T Consensus        72 w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~-~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~  148 (313)
T KOG1407|consen   72 WDPKHPDLFATASGDKTIRIWDIRSGKCTARIE-TKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKF  148 (313)
T ss_pred             eCCCCCcceEEecCCceEEEEEeccCcEEEEee-ccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccc
Confidence            01112223567888999999 999999998886 33333 368899999999999999999999999887766554 345


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .+..+.|+-++.+|+....-|+|.|.....-+++..+..|...    .+      ++.|+|+|+++++        |+.|
T Consensus       149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn----Ci------cI~f~p~GryfA~--------GsAD  210 (313)
T KOG1407|consen  149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN----CI------CIEFDPDGRYFAT--------GSAD  210 (313)
T ss_pred             eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc----eE------EEEECCCCceEee--------cccc
Confidence            6888999887888877777899999998888999999988621    22      3779999999999        6679


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..+.+||+...-+++.+..++. |+.++||.||++|+++++ |-.|-|=++++|.++
T Consensus       211 AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  211 ALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVETGDRV  266 (313)
T ss_pred             ceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc-cceEEeEecccCCeE
Confidence            9999999999888898888777 999999999999999999 999999999988764

>KOG0267|consensus

Probab=99.90  E-value=6.7e-24  Score=183.25  Aligned_cols=187  Identities=18%  Similarity=0.300  Sum_probs=163.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ...|+.|..+-| ....-..+..+. +|+.+|.++.|+++..+|++|+.+|+|++||++..+.+++|.+|...+.++.|+
T Consensus        43 ~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~  121 (825)
T KOG0267|consen   43 LVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH  121 (825)
T ss_pred             eccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec
Confidence            456777777767 333344455566 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |-+.++++++.|..+++||++...+.+.+..|..          .+..+.|+|+|.+++.        |.+|..+++||+
T Consensus       122 P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~----------vv~~l~lsP~Gr~v~~--------g~ed~tvki~d~  183 (825)
T KOG0267|consen  122 PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR----------VVDVLRLSPDGRWVAS--------GGEDNTVKIWDL  183 (825)
T ss_pred             cceEEeccccccccceehhhhccCceeeecCCcc----------eeEEEeecCCCceeec--------cCCcceeeeecc
Confidence            9999999999999999999997778888877641          2334788999999988        566999999999


Q ss_pred             CCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..|+....|..|+. +.++.|+|..-.+++|+. |++|++||+++.+.|
T Consensus       184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~-d~tv~f~dletfe~I  231 (825)
T KOG0267|consen  184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS-DRTVRFWDLETFEVI  231 (825)
T ss_pred             cccccccccccccccccccccCchhhhhccCCC-CceeeeeccceeEEe
Confidence            99999999998877 999999999999999999 999999999987764

>KOG0292|consensus

Probab=99.90  E-value=1.2e-22  Score=179.04  Aligned_cols=181  Identities=15%  Similarity=0.242  Sum_probs=161.3

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ++-..|.|++ |.+-+.++..+. .|+++|..+.|+|.+.+|++|+.|-.|++|+..+.+++.++.+|-+.|..+.|++.
T Consensus        26 tslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhe  104 (1202)
T KOG0292|consen   26 TSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHE  104 (1202)
T ss_pred             EeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCC
Confidence            5567789999 899999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      -..++++|.|.+|+||+..+++++..+.+|.    .++..      -.|+|....+++++        -|.+|++||+..
T Consensus       105 yPWIlSASDDQTIrIWNwqsr~~iavltGHn----HYVMc------AqFhptEDlIVSaS--------LDQTVRVWDisG  166 (1202)
T KOG0292|consen  105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHN----HYVMC------AQFHPTEDLIVSAS--------LDQTVRVWDISG  166 (1202)
T ss_pred             CceEEEccCCCeEEEEeccCCceEEEEecCc----eEEEe------eccCCccceEEEec--------ccceEEEEeecc
Confidence            9999999999999999999999999999996    55553      45899888888855        499999999863


Q ss_pred             --------C-------------------c--eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         251 --------G-------------------R--LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       251 --------~-------------------~--~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                              +                   .  ....+.+|+. |+-++|+|.-..|++|+. |..|++|....
T Consensus       167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D-DRqVKlWrmne  237 (1202)
T KOG0292|consen  167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNE  237 (1202)
T ss_pred             hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC-cceeeEEEecc
Confidence                    1                   0  1245678888 999999999999999999 99999998753

>KOG0289|consensus

Probab=99.90  E-value=1.1e-21  Score=160.59  Aligned_cols=225  Identities=14%  Similarity=0.149  Sum_probs=173.6

Q ss_pred             CccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCCCCCc
Q psy3337          10 KNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPIL   89 (297)
Q Consensus        10 ~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   89 (297)
                      ...+++||.|...-+|+...+..-            .-.+|+.++--...-.+.                       ...
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l------------~~~~Gh~kki~~v~~~~~-----------------------~~~  275 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQIL------------ATLKGHTKKITSVKFHKD-----------------------LDT  275 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhh------------hhccCcceEEEEEEeccc-----------------------hhh
Confidence            478899999999999988776422            111222222211111110                       011


Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc--cCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH--SKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~  166 (297)
                      -..++.|..|++ ............ .|..+|+.+..+|.|.||++++.|++..+.|++++..+......  .-.+++.+
T Consensus       276 v~~aSad~~i~vws~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  276 VITASADEIIRVWSVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             eeecCCcceEEeeccccccCccccc-cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            346788999999 444444444444 89999999999999999999999999999999999887666532  23589999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      |+|||..|.+|..|+.|++||+.++..+..|.+|.          ..+..+.|+.+|.+|++.+.        |+.|++|
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght----------~~vk~i~FsENGY~Lat~ad--------d~~V~lw  416 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT----------GPVKAISFSENGYWLATAAD--------DGSVKLW  416 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCCccccccCCCCC----------CceeEEEeccCceEEEEEec--------CCeEEEE
Confidence            99999999999999999999999998888888775          23456889999999999665        9999999


Q ss_pred             eCCCCceEEEeccCCC--eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         247 DVDSGRLRLAREMKES--LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      |++..+...++...+.  +.+++|.+.|.+|+.++. |=.|++++
T Consensus       417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-~l~Vy~~~  460 (506)
T KOG0289|consen  417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-DLQVYICK  460 (506)
T ss_pred             EehhhcccceeeccccccceeEEEcCCCCeEEeecc-eeEEEEEe
Confidence            9999877777766554  999999999999999988 77777776

>KOG0772|consensus

Probab=99.90  E-value=1.6e-22  Score=168.75  Aligned_cols=166  Identities=11%  Similarity=0.138  Sum_probs=123.3

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE------------EeccccCCeeEEEEccCC-CEEEEEeCCC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL------------HIEAHSKEIDDVDFSISG-EQIVSIAKDG  181 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~sp~~-~~l~s~~~d~  181 (297)
                      .....|.+++|++.|.+|++.+.....+|+|-...+.+.            .-++|...+++.+|+|+. ..|++++.||
T Consensus       212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence            444567899999999999988888899999954332222            235899999999999954 5789999999


Q ss_pred             cEEEEEcCCCce-eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc--eE-EEe
Q psy3337         182 KAFVWNSKNGSL-SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR--LR-LAR  257 (297)
Q Consensus       182 ~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~--~~-~~~  257 (297)
                      ++++||+...+. +..+......+....     ....+|+|+|+.|++        |..||.|.+|+..+..  +. ..-
T Consensus       292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~-----~tsC~~nrdg~~iAa--------gc~DGSIQ~W~~~~~~v~p~~~vk  358 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQVIKTKPAGGKRVP-----VTSCAWNRDGKLIAA--------GCLDGSIQIWDKGSRTVRPVMKVK  358 (641)
T ss_pred             cEEEEecCCchhheeEEeeccCCCcccC-----ceeeecCCCcchhhh--------cccCCceeeeecCCcccccceEee
Confidence            999999986543 333432221121222     234678999999888        6669999999986532  22 222


Q ss_pred             ccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         258 EMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       258 ~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ..|.   .|+|+.||+||++|++-+. |+++++||+++.+
T Consensus       359 ~AH~~g~~Itsi~FS~dg~~LlSRg~-D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  359 DAHLPGQDITSISFSYDGNYLLSRGF-DDTLKVWDLRQFK  397 (641)
T ss_pred             eccCCCCceeEEEeccccchhhhccC-CCceeeeeccccc
Confidence            3332   3999999999999999999 9999999998865

>KOG0646|consensus

Probab=99.90  E-value=4.5e-22  Score=164.21  Aligned_cols=194  Identities=18%  Similarity=0.243  Sum_probs=160.8

Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC---------CCeee
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP---------KMKPL  152 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~---------~~~~~  152 (297)
                      ....+.+..++...+.|++ .+.+|..+..+. .|-..|+|+.|+-||.+|+||+.||.|.+|++.         +-+++
T Consensus        89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen   89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             cCCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence            3344444456668889999 899999998887 999999999999999999999999999999862         34578


Q ss_pred             EEeccccCCeeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         153 LHIEAHSKEIDDVDFSIS--GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       153 ~~~~~~~~~v~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                      ..|..|+-+|+++...+.  ..+|++++.|.++++||+..|..+.++..+.+           +.+++.+|-+..++.  
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s-----------i~av~lDpae~~~yi--  234 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS-----------IKAVALDPAERVVYI--  234 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc-----------ceeEEEcccccEEEe--
Confidence            899999999999998764  45899999999999999999998888765532           234677999999998  


Q ss_pred             cCcccccCCCCeEEEEeCCCC----------------ceEEEeccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         231 NPLAQNKRGISYVQQWDVDSG----------------RLRLAREMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~~----------------~~~~~~~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                            |+.+|.|.+.++...                ..+..+.+|.   .|+|++++-||..|++|+. ||.|.|||+.
T Consensus       235 ------Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-dg~VcvWdi~  307 (476)
T KOG0646|consen  235 ------GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-DGKVCVWDIY  307 (476)
T ss_pred             ------cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC-CCCEEEEecc
Confidence                  677999999887542                2334455553   3999999999999999999 9999999999


Q ss_pred             CceecC
Q psy3337         292 SLQMCR  297 (297)
Q Consensus       292 ~~~~~~  297 (297)
                      +.+++|
T Consensus       308 S~Q~iR  313 (476)
T KOG0646|consen  308 SKQCIR  313 (476)
T ss_pred             hHHHHH
Confidence            988765

>KOG0300|consensus

Probab=99.89  E-value=7.9e-22  Score=155.95  Aligned_cols=234  Identities=14%  Similarity=0.170  Sum_probs=171.8

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEE--eeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKI--TAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKN   78 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   78 (297)
                      +||.-|++.+.++++|.-|++-.||+.  +-+-.+..+......                         +  .+.|.   
T Consensus       193 VNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSs-------------------------E--eE~e~---  242 (481)
T KOG0300|consen  193 VNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSS-------------------------E--EEEEH---  242 (481)
T ss_pred             eeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCc-------------------------h--hhhhc---
Confidence            478889999999999999999999973  222111100000000                         0  00000   


Q ss_pred             CCCCCCCCCCcCCCCC-CCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          79 KKDKIEDPPILNSIDS-KEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        79 ~~~~~~~~~~l~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                         ..++.+.+..+.. +..+|++      ++..+. +|.+.|.++.|-..|+.++++++|.+-.+||+++++.+..+.+
T Consensus       243 ---sDe~~~d~d~~~~sD~~tiRv------Pl~~lt-gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG  312 (481)
T KOG0300|consen  243 ---SDEHNRDTDSSEKSDGHTIRV------PLMRLT-GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG  312 (481)
T ss_pred             ---ccccccccccccccCCceeee------eeeeee-ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC
Confidence               0111111122222 2235554      355666 9999999999999999999999999999999999999999999


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      |....+.++-+|..+++++++.|.+.++||++.. ..+..|.+|....          .++.|..+.+ ++        +
T Consensus       313 Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV----------TS~vF~~dd~-vV--------S  373 (481)
T KOG0300|consen  313 HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV----------TSVVFNTDDR-VV--------S  373 (481)
T ss_pred             cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccce----------eEEEEecCCc-ee--------e
Confidence            9999999999999999999999999999999843 4567777876322          1233443332 33        4


Q ss_pred             cCCCCeEEEEeCCC-CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         237 KRGISYVQQWDVDS-GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       237 g~~d~~i~~wd~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |++|.+|++||++. ..++.++.....++.++++..+..|+.-.. +..|++||+....
T Consensus       374 gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD-NRqvRlfDlnG~R  431 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD-NRQVRLFDLNGNR  431 (481)
T ss_pred             cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC-CceEEEEecCCCc
Confidence            88899999999998 567888888888999999998889999998 9999999986543

>KOG0264|consensus

Probab=99.89  E-value=8.4e-22  Score=162.09  Aligned_cols=163  Identities=19%  Similarity=0.260  Sum_probs=131.1

Q ss_pred             EEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCC--CCeeeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEE
Q psy3337         110 QTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFP--KMKPLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFV  185 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~l  185 (297)
                      ..+. +|...|..++|+|- ...|++++.|+.+.|||++  +.++.....+|...|+|++|+| ++..||+|+.|++|.|
T Consensus       221 ~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L  299 (422)
T KOG0264|consen  221 TIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVAL  299 (422)
T ss_pred             EEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEE
Confidence            3444 99999999999995 4788999999999999999  5566778889999999999999 6678899999999999


Q ss_pred             EEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-Cc-----------
Q psy3337         186 WNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GR-----------  252 (297)
Q Consensus       186 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~-----------  252 (297)
                      ||+|+- +++.++..|.+.          +..|.|+|....+++.       ++.|+.+.+||+.. ++           
T Consensus       300 wDlRnL~~~lh~~e~H~de----------v~~V~WSPh~etvLAS-------Sg~D~rl~vWDls~ig~eq~~eda~dgp  362 (422)
T KOG0264|consen  300 WDLRNLNKPLHTFEGHEDE----------VFQVEWSPHNETVLAS-------SGTDRRLNVWDLSRIGEEQSPEDAEDGP  362 (422)
T ss_pred             eechhcccCceeccCCCcc----------eEEEEeCCCCCceeEe-------cccCCcEEEEeccccccccChhhhccCC
Confidence            999864 567777777632          2247899987766553       34699999999975 22           


Q ss_pred             --eEEEeccCCC-eEEEEEcCCCCE-EEEEecCCCeEEEEEeC
Q psy3337         253 --LRLAREMKES-LSALAVRDDGRF-VAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       253 --~~~~~~~~~~-v~~~~~s~dg~~-l~~~~~~dg~i~vwd~~  291 (297)
                        ++..-.+|.. |..+.|+|+..+ |++.++ |+.+.||...
T Consensus       363 pEllF~HgGH~~kV~DfsWnp~ePW~I~Svae-DN~LqIW~~s  404 (422)
T KOG0264|consen  363 PELLFIHGGHTAKVSDFSWNPNEPWTIASVAE-DNILQIWQMA  404 (422)
T ss_pred             cceeEEecCcccccccccCCCCCCeEEEEecC-CceEEEeecc
Confidence              2345556766 999999998776 566777 9999999875

>KOG0641|consensus

Probab=99.89  E-value=1.4e-20  Score=142.40  Aligned_cols=189  Identities=13%  Similarity=0.140  Sum_probs=142.3

Q ss_pred             CCCCCCCceEEEEeeCCCeE------EEEecCCCCcEEEEEEecC----CCEEEEEc-CCCcEEEEeCCCCeeeEEeccc
Q psy3337          90 NSIDSKEKNLRFGFKTFDSV------QTVFAGSESLQRVVRLSRN----GDLMVTGG-TDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        90 ~~~~~~d~~i~~~~~~~~~~------~~~~~~h~~~v~~~~~s~~----g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                      ...|++|++|++-.-+.+.-      ..+. .|.+.|..++|-.+    |..|++++ .|..|++-|-..++...-+.+|
T Consensus       104 iatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh  182 (350)
T KOG0641|consen  104 IATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH  182 (350)
T ss_pred             EEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence            34677777777644443321      1222 57777888887543    35566554 4666777777778888888889


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ++-|.++- +-++-+|++|+.|.+|+.||++-..++.++...-.++ .  +.+..+..++..|.|+.|++        |.
T Consensus       183 tghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-g--lessavaav~vdpsgrll~s--------g~  250 (350)
T KOG0641|consen  183 TGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-G--LESSAVAAVAVDPSGRLLAS--------GH  250 (350)
T ss_pred             cccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-C--cccceeEEEEECCCcceeee--------cc
Confidence            88887663 3357799999999999999999888887775332221 1  12234556889999999998        66


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .|....+||++.++.++.+..|.. |+++.|||...|+++++. |..|++-|++.
T Consensus       251 ~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlqg  304 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQG  304 (350)
T ss_pred             CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc-cceEEEeeccc
Confidence            799999999999999999988887 999999999999999999 99999999863

>KOG0267|consensus

Probab=99.89  E-value=4e-23  Score=178.49  Aligned_cols=217  Identities=19%  Similarity=0.294  Sum_probs=178.1

Q ss_pred             CCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC--CCCC
Q psy3337           8 NGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD--KIED   85 (297)
Q Consensus         8 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (297)
                      ..++.+++||.|..+-||.+.+......    -.+                                 +..+.+  ....
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S----~~~---------------------------------hespIeSl~f~~   80 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKPNAITS----LTG---------------------------------HESPIESLTFDT   80 (825)
T ss_pred             ccceeeccCCCceeeccccccCCchhhe----eec---------------------------------cCCcceeeecCc
Confidence            3458899999999999999887653321    000                                 111111  1112


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      +..|..+|+.+|+|++ |++.++.++++. +|...+..+.|+|-+.++++|+.|+.+++||.+...+...+.+|...|..
T Consensus        81 ~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             chhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence            2234668999999999 999999999999 99999999999999999999999999999999988899999999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      +.|+|+|+++++++.|.+++|||+..|+.+..|..|.          +.+..+.|+|..-.++.        |+.|++++
T Consensus       160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e----------~~v~sle~hp~e~Lla~--------Gs~d~tv~  221 (825)
T KOG0267|consen  160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE----------GKVQSLEFHPLEVLLAP--------GSSDRTVR  221 (825)
T ss_pred             EeecCCCceeeccCCcceeeeeccccccccccccccc----------ccccccccCchhhhhcc--------CCCCceee
Confidence            9999999999999999999999999999999988765          23334667888776666        77799999


Q ss_pred             EEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEec
Q psy3337         245 QWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~  280 (297)
                      +||+++.+.+........ |.+.+|+|++..+++|..
T Consensus       222 f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  222 FWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             eeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence            999998877776655444 999999999999999876

>KOG0300|consensus

Probab=99.89  E-value=4.9e-22  Score=157.12  Aligned_cols=184  Identities=17%  Similarity=0.291  Sum_probs=157.5

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC------CC--------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF------PK--------------  148 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~------~~--------------  148 (297)
                      ..+.+.|.+.+| .+++|.++.++. ||.+.|+++.|++.+.++++++.|++-.||..      ..              
T Consensus       163 ~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  163 CGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             eeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            346788999999 899999999999 99999999999999999999999999999971      00              


Q ss_pred             --------------------CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEE
Q psy3337         149 --------------------MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYL  208 (297)
Q Consensus       149 --------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~  208 (297)
                                          ..++..|.+|...|.+..|-..+..+++++.|.+..+||+++|..+..+.+|...-    
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL----  317 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL----  317 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhc----
Confidence                                01455678899999999999999999999999999999999999999999986331    


Q ss_pred             EEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       209 ~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                            ..++-+|..+.+++.+        .|.+.++||++. -+.+..|.+|.. |+++.|..| ..+++|+. |.+|+
T Consensus       318 ------tHcstHptQrLVvTsS--------rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSD-DrTvK  381 (481)
T KOG0300|consen  318 ------THCSTHPTQRLVVTSS--------RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSD-DRTVK  381 (481)
T ss_pred             ------cccccCCcceEEEEec--------cCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCC-CceEE
Confidence                  1244588888888854        499999999986 466788999988 999999865 56888999 99999


Q ss_pred             EEEeCCce
Q psy3337         287 VYIAFSLQ  294 (297)
Q Consensus       287 vwd~~~~~  294 (297)
                      |||++++.
T Consensus       382 vWdLrNMR  389 (481)
T KOG0300|consen  382 VWDLRNMR  389 (481)
T ss_pred             Eeeecccc
Confidence            99998765

>KOG0301|consensus

Probab=99.89  E-value=2.1e-21  Score=167.26  Aligned_cols=174  Identities=16%  Similarity=0.222  Sum_probs=146.5

Q ss_pred             CCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          90 NSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        90 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      ..+|++|.++++|.. +++...+. +|+..|+++..-|++ .++||+.|.+|++|.-  ++.+++|.+|++.|..+++-+
T Consensus       115 ~iSgSWD~TakvW~~-~~l~~~l~-gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~  189 (745)
T KOG0301|consen  115 LISGSWDSTAKVWRI-GELVYSLQ-GHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD  189 (745)
T ss_pred             eEecccccceEEecc-hhhhcccC-CcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence            468999999999754 35566677 999999999999988 8999999999999974  788899999999999999997


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      ++ .|++++.||.|++|++ +|..+.++.+|+    .++++      +...+++..+++++.        |+++++|+..
T Consensus       190 ~~-~flScsNDg~Ir~w~~-~ge~l~~~~ght----n~vYs------is~~~~~~~Ivs~gE--------DrtlriW~~~  249 (745)
T KOG0301|consen  190 DS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHT----NFVYS------ISMALSDGLIVSTGE--------DRTLRIWKKD  249 (745)
T ss_pred             CC-CeEeecCCceEEEEec-cCceeeeeeccc----eEEEE------EEecCCCCeEEEecC--------CceEEEeecC
Confidence            65 5889999999999999 888999998887    66664      445566677777554        9999999987


Q ss_pred             CCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         250 SGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       250 ~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                        .+.+.+..+.. |+++.+-++|..++.|+  ||.|+||....
T Consensus       250 --e~~q~I~lPttsiWsa~~L~NgDIvvg~S--DG~VrVfT~~k  289 (745)
T KOG0301|consen  250 --ECVQVITLPTTSIWSAKVLLNGDIVVGGS--DGRVRVFTVDK  289 (745)
T ss_pred             --ceEEEEecCccceEEEEEeeCCCEEEecc--CceEEEEEecc
Confidence              78888888775 99999999887766555  99999998763

>KOG0640|consensus

Probab=99.89  E-value=6.3e-22  Score=155.97  Aligned_cols=244  Identities=14%  Similarity=0.168  Sum_probs=180.4

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeecc-ccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMN-GVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      +||..|++...+|+++..|+.+++|++.+....+. ....+.          ..-|..+..                   
T Consensus       175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~----------~~vrsiSfH-------------------  225 (430)
T KOG0640|consen  175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT----------EPVRSISFH-------------------  225 (430)
T ss_pred             ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc----------ceeeeEeec-------------------
Confidence            47888999999999999999999999977532110 000000          000001111                   


Q ss_pred             CCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEe--cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVF--AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                           +..-....|.+..++++ |+.+.++...-.  .+|.+.|+++.+++.|++.++|+.||.|+|||--+++++.++.
T Consensus       226 -----PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~  300 (430)
T KOG0640|consen  226 -----PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG  300 (430)
T ss_pred             -----CCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence                 11111346777889999 999998876554  4799999999999999999999999999999998999988875


Q ss_pred             -ccc-CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         157 -AHS-KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       157 -~~~-~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                       +|. ..|.+..|..+++++++++.|..+++|.+.+++++..+.+..-.+.. ....    .-.|+....+++....   
T Consensus       301 ~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-~~rt----qAvFNhtEdyVl~pDE---  372 (430)
T KOG0640|consen  301 NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-KHRT----QAVFNHTEDYVLFPDE---  372 (430)
T ss_pred             hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch-hhhh----hhhhcCccceEEcccc---
Confidence             454 47999999999999999999999999999999999988765322111 1100    1225666666666543   


Q ss_pred             cccCCCCeEEEEeCCCCceEEEec-cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLARE-MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~-~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                          ..+.+.-||.+++..+..+. +|.. ++.+.-||.+.-+.+++. |-.+++|--+
T Consensus       373 ----as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd-D~raRFWyrr  426 (430)
T KOG0640|consen  373 ----ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD-DFRARFWYRR  426 (430)
T ss_pred             ----ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc-cceeeeeeec
Confidence                35689999999976655543 3444 999999999999999999 9999999643

>KOG0647|consensus

Probab=99.88  E-value=6.9e-21  Score=149.46  Aligned_cols=199  Identities=12%  Similarity=0.111  Sum_probs=147.7

Q ss_pred             CcCCCCCCCceEEE-EeeC-CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEE
Q psy3337          88 ILNSIDSKEKNLRF-GFKT-FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        88 ~l~~~~~~d~~i~~-~~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  165 (297)
                      .+..++++|++||+ +++. |..+-.....|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..+..|..+|..+
T Consensus        41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~  119 (347)
T KOG0647|consen   41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTC  119 (347)
T ss_pred             ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEE
Confidence            34458999999999 7665 45554444589999999999999999999999999999999998 466788899999999


Q ss_pred             EEccCCC--EEEEEeCCCcEEEEEcCCCceeeeeeccCC---------C------Cce-EEEEe---------------e
Q psy3337         166 DFSISGE--QIVSIAKDGKAFVWNSKNGSLSKELKWNTP---------D------NIK-YLFKR---------------C  212 (297)
Q Consensus       166 ~~sp~~~--~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~---------~------~~~-~~~~~---------------~  212 (297)
                      .|-+...  .|++|+.|++|+.||++...++.++..++.         .      ... .++..               -
T Consensus       120 ~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~  199 (347)
T KOG0647|consen  120 HWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW  199 (347)
T ss_pred             EEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc
Confidence            9987554  899999999999999998888777765430         0      000 00000               0


Q ss_pred             eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC--ceEEEeccCC----------CeEEEEEcCCCCEEEEEec
Q psy3337         213 RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG--RLRLAREMKE----------SLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       213 ~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~--~~~~~~~~~~----------~v~~~~~s~dg~~l~~~~~  280 (297)
                      +..+|+..+|....+.        |+-+|.+.+..+..+  +.-..|+.|.          .|.+++|+|.-..|++++.
T Consensus       200 Q~R~va~f~d~~~~al--------GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs  271 (347)
T KOG0647|consen  200 QTRCVACFQDKDGFAL--------GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS  271 (347)
T ss_pred             eeeEEEEEecCCceEe--------eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC
Confidence            1123444444443433        677999999888875  3334454443          1788999999899999999


Q ss_pred             CCCeEEEEEeCCceec
Q psy3337         281 FTGSVFVYIAFSLQMC  296 (297)
Q Consensus       281 ~dg~i~vwd~~~~~~~  296 (297)
                       ||++.+||-....+|
T Consensus       272 -DGtf~FWDkdar~kL  286 (347)
T KOG0647|consen  272 -DGTFSFWDKDARTKL  286 (347)
T ss_pred             -CceEEEecchhhhhh
Confidence             999999997655444

>KOG0305|consensus

Probab=99.88  E-value=3.8e-21  Score=164.56  Aligned_cols=190  Identities=12%  Similarity=0.211  Sum_probs=163.9

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE-eccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~  167 (297)
                      ...|..++.|.| |..+.+.+..+..+|...|.+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..++|
T Consensus       232 LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw  309 (484)
T KOG0305|consen  232 LAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW  309 (484)
T ss_pred             EEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence            457888999999 9998888888882399999999998  66899999999999999998775544 8899999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      ++|+.+||+|+.|+.+.|||.....++..+..|.          .++..++|+|-..-|++.+.     |+.|+.|++||
T Consensus       310 s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~----------aAVKA~awcP~q~~lLAsGG-----Gs~D~~i~fwn  374 (484)
T KOG0305|consen  310 SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT----------AAVKALAWCPWQSGLLATGG-----GSADRCIKFWN  374 (484)
T ss_pred             CCCCCeeccCCCccceEeccCCCccccEEEeccc----------eeeeEeeeCCCccCceEEcC-----CCcccEEEEEE
Confidence            9999999999999999999997777777777664          34456889998777777777     99999999999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEecC-CCeEEEEEeCCceec
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTMF-TGSVFVYIAFSLQMC  296 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~-dg~i~vwd~~~~~~~  296 (297)
                      ..+++.+..+.....|.+|.|++..+-|+++..+ ++.|.||+..+.+++
T Consensus       375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~  424 (484)
T KOG0305|consen  375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV  424 (484)
T ss_pred             cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence            9999999999988889999999988777655432 789999999887664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=7.2e-20  Score=153.40  Aligned_cols=192  Identities=10%  Similarity=0.075  Sum_probs=140.7

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC-cEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG-HLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      .++..|+.+++ ++.+++.+..+.  +...+.+++|+|+|++++++..++ .+.+||..+++.+..+. ....+..++|+
T Consensus        89 ~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s  165 (300)
T TIGR03866        89 IANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT  165 (300)
T ss_pred             EEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC
Confidence            34556789999 888887776664  233467899999999999888775 46778998887665543 23356789999


Q ss_pred             cCCCEEEEE-eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 ISGEQIVSI-AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p~~~~l~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      |++++|+.+ ..++.|++||+.+++.+..+..+.+.....   ......+.++|++++++....       .++.|.+||
T Consensus       166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~s~dg~~~~~~~~-------~~~~i~v~d  235 (300)
T TIGR03866       166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE---AVQPVGIKLTKDGKTAFVALG-------PANRVAVVD  235 (300)
T ss_pred             CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc---cCCccceEECCCCCEEEEEcC-------CCCeEEEEE
Confidence            999988654 468999999999988777665432110000   001123678999998765432       256899999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEE-ecCCCeEEEEEeCCceec
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVG-TMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~~dg~i~vwd~~~~~~~  296 (297)
                      +.+++.+..+.....+.+++|+|+|.+|+++ .. +|.|.+||+.+++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-SNDVSVIDVAALKVI  284 (300)
T ss_pred             CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-CCeEEEEECCCCcEE
Confidence            9998887766544559999999999999886 45 899999999998865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0269|consensus

Probab=99.88  E-value=7.3e-22  Score=171.92  Aligned_cols=234  Identities=16%  Similarity=0.175  Sum_probs=174.9

Q ss_pred             CCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCCCCC
Q psy3337           9 GKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPI   88 (297)
Q Consensus         9 ~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (297)
                      ..++|+++...+.+-+|+++..........-                               .+++..-..-+...-.|-
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-------------------------------~EH~Rs~~~ldfh~tep~  147 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVF-------------------------------NEHERSANKLDFHSTEPN  147 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHh-------------------------------hhhccceeeeeeccCCcc
Confidence            4578899999999999999985332100000                               001111122233444556


Q ss_pred             cCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCC-eeeEEeccccCCeeEE
Q psy3337          89 LNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKM-KPLLHIEAHSKEIDDV  165 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~  165 (297)
                      +..+|+.|++|++ |++..+...+++ +....|..|.|+| .+..|+++...|.+.+||++.. ++...+.+|.++|.++
T Consensus       148 iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             EEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence            6779999999999 999999999998 8888999999999 5789999999999999999864 4677889999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      .|+|++.+||+|++|++|+|||+.+++.-.....+         +...++.|.|-|...+.+....     --.|..|+|
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------Tiapv~rVkWRP~~~~hLAtcs-----mv~dtsV~V  292 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---------TIAPVGRVKWRPARSYHLATCS-----MVVDTSVHV  292 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccceeEEe---------ecceeeeeeeccCccchhhhhh-----ccccceEEE
Confidence            99999999999999999999999765432222222         2234556889998776554433     345889999


Q ss_pred             EeCCC-CceEEEeccCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEE
Q psy3337         246 WDVDS-GRLRLAREMKES-LSALAVRD-DGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       246 wd~~~-~~~~~~~~~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd  289 (297)
                      ||++. .-+..++..|.. ++.++|.. |-..|.+++. ||+|..-.
T Consensus       293 WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK-D~tv~qh~  338 (839)
T KOG0269|consen  293 WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK-DGTVLQHL  338 (839)
T ss_pred             EeeccccccceeeeccCccccceeccCCCceeeEeecC-ccHHHHhh
Confidence            99986 445677777877 88999965 5567888888 99875443

>KOG0301|consensus

Probab=99.88  E-value=4.1e-21  Score=165.47  Aligned_cols=174  Identities=12%  Similarity=0.214  Sum_probs=149.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ...++.|.++.+ ......++.++. +|...|+|++...++. +++|++|.++++|-.  +++...+++|+..|+++++-
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l  149 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASL  149 (745)
T ss_pred             eEeecccceEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeec
Confidence            457899999999 888889999999 9999999999888887 999999999999974  56667799999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |+. .++||+.|.+|++|.-  ++.+++|.+|....          ..+++-+++. ++++++        ||.|+.|++
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V----------RgL~vl~~~~-flScsN--------Dg~Ir~w~~  207 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCV----------RGLAVLDDSH-FLSCSN--------DGSIRLWDL  207 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--Cchhhhhccchhhe----------eeeEEecCCC-eEeecC--------CceEEEEec
Confidence            987 8999999999999974  78889999986322          1244455543 666555        999999999


Q ss_pred             CCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         249 DSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       249 ~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                       +|+++..+.+|.. |++++..+++..++++++ |++++||+..
T Consensus       208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE-DrtlriW~~~  249 (745)
T KOG0301|consen  208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE-DRTLRIWKKD  249 (745)
T ss_pred             -cCceeeeeeccceEEEEEEecCCCCeEEEecC-CceEEEeecC
Confidence             6889999999988 999998889999999999 9999999865

>KOG1446|consensus

Probab=99.87  E-value=5.3e-20  Score=145.39  Aligned_cols=185  Identities=15%  Similarity=0.187  Sum_probs=153.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC--CCcEEEEeCCCCeeeEEeccccCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT--DGHLRLWSFPKMKPLLHIEAHSKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  166 (297)
                      ..+.+.|.+++| +..+++.++++. .+.-.|..++|....+.++.++.  |.+|+..++.+.+.++-|.+|...|.+|+
T Consensus        29 litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~  107 (311)
T KOG1446|consen   29 LITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLS  107 (311)
T ss_pred             EEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEE
Confidence            345778889999 999999999998 67667888999887777777666  89999999999999999999999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      .+|-+..+++++.|++|++||++..++...+....+.            ..+|.|+|-+++++..        ...|++|
T Consensus       108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p------------i~AfDp~GLifA~~~~--------~~~IkLy  167 (311)
T KOG1446|consen  108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP------------IAAFDPEGLIFALANG--------SELIKLY  167 (311)
T ss_pred             ecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc------------ceeECCCCcEEEEecC--------CCeEEEE
Confidence            9998899999999999999999977766555433211            2678999988888543        5599999


Q ss_pred             eCCC--CceEEEeccC----CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         247 DVDS--GRLRLAREMK----ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       247 d~~~--~~~~~~~~~~----~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |+++  ..+...+...    ...+.+.|||||++|+.++. .+.+++.|..+|..+
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~  222 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVK  222 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEe
Confidence            9998  3344444332    33899999999999999999 999999999988754

>KOG0643|consensus

Probab=99.87  E-value=1.2e-20  Score=145.88  Aligned_cols=236  Identities=16%  Similarity=0.147  Sum_probs=165.7

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      |++ +.+.+.++++..|++++||++....+-.  ..+-+.        ..++.                        .+.
T Consensus        58 ~Di-d~~s~~liTGSAD~t~kLWDv~tGk~la--~~k~~~--------~Vk~~------------------------~F~  102 (327)
T KOG0643|consen   58 CDI-DWDSKHLITGSADQTAKLWDVETGKQLA--TWKTNS--------PVKRV------------------------DFS  102 (327)
T ss_pred             EEe-cCCcceeeeccccceeEEEEcCCCcEEE--EeecCC--------eeEEE------------------------eec
Confidence            444 4456889999999999999998876532  110000        00110                        000


Q ss_pred             CCCCCCcC---CCCCCCceEEE-Eee-------CCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-
Q psy3337          83 IEDPPILN---SIDSKEKNLRF-GFK-------TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-  150 (297)
Q Consensus        83 ~~~~~~l~---~~~~~d~~i~~-~~~-------~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-  150 (297)
                      ..+.-++.   ..-+..+.|.+ +++       ..+++..+. .+...++.+-|.|-++.|++|..||.|.+||+++++ 
T Consensus       103 ~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~  181 (327)
T KOG0643|consen  103 FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE  181 (327)
T ss_pred             cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence            11111111   12233445666 555       345566666 788999999999999999999999999999999975 


Q ss_pred             eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         151 PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       151 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                      .+..-+.|...|+.+.++||..+|++++.|.+.++||+++-+.++++....|.+           ..+++|-...++..+
T Consensus       182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN-----------~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVN-----------TAAISPLLDHVILGG  250 (327)
T ss_pred             eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccc-----------ceecccccceEEecC
Confidence            456667899999999999999999999999999999999999988887665543           355678766666543


Q ss_pred             cCcccccCCCCeEEEEeCCCC------------ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         231 NPLAQNKRGISYVQQWDVDSG------------RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~~------------~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .      .+-..|..-+.+.|            +.+..+.+|-. |++++|+|+|+..++|++ ||.|++.-..+
T Consensus       251 G------qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE-DG~VR~h~Fd~  318 (327)
T KOG0643|consen  251 G------QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE-DGYVRLHHFDS  318 (327)
T ss_pred             C------ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC-CceEEEEEecc
Confidence            2      22223333333333            34556677765 999999999999999999 99999876543

>KOG4283|consensus

Probab=99.87  E-value=1.1e-20  Score=148.05  Aligned_cols=161  Identities=16%  Similarity=0.172  Sum_probs=133.8

Q ss_pred             CCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc---CCCEEEEEeCCCcEEEEEcCC
Q psy3337         115 GSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI---SGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       115 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      +|.-.|..+.|-| |.-+|.+++.|.++++||..+.+....|. ..+.|++-+++|   ...++|+|..|-.|++-|+.+
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            7888899999999 66789999999999999999988877776 567899999998   345788888999999999999


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-ceEEEecc----------
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-RLRLAREM----------  259 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~----------  259 (297)
                      |...+.+.+|...          +-.+.|+|...+++..       |+.|+.|++||++.. -+...+..          
T Consensus       178 Gs~sH~LsGHr~~----------vlaV~Wsp~~e~vLat-------gsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~  240 (397)
T KOG4283|consen  178 GSFSHTLSGHRDG----------VLAVEWSPSSEWVLAT-------GSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK  240 (397)
T ss_pred             CcceeeeccccCc----------eEEEEeccCceeEEEe-------cCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence            9999999999733          2247899999887663       778999999999863 33333322          


Q ss_pred             ----CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         260 ----KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       260 ----~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                          |.. |.+++|+.||.++++.+. |..+++|+..+|+
T Consensus       241 ~n~ah~gkvngla~tSd~~~l~~~gt-d~r~r~wn~~~G~  279 (397)
T KOG4283|consen  241 TNTAHYGKVNGLAWTSDARYLASCGT-DDRIRVWNMESGR  279 (397)
T ss_pred             ccccccceeeeeeecccchhhhhccC-ccceEEeecccCc
Confidence                333 899999999999999999 9999999998875

>KOG1036|consensus

Probab=99.87  E-value=3.9e-20  Score=145.62  Aligned_cols=236  Identities=16%  Similarity=0.138  Sum_probs=165.5

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      -+.|++.++.|+++..|+.+++|++.......  ......        +.-                        .-. .
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--~~~~~~--------plL------------------------~c~-F   62 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--KFKHGA--------PLL------------------------DCA-F   62 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhh--heecCC--------cee------------------------eee-c
Confidence            34588889999999999999999997753210  000000        000                        000 0


Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                      ..+  .-..+|+-|+.|++ |+.++...+.-  .|...|.|+.+++....+++|++|++|++||.+....+..+.. ...
T Consensus        63 ~d~--~~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kk  137 (323)
T KOG1036|consen   63 ADE--STIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKK  137 (323)
T ss_pred             cCC--ceEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cce
Confidence            000  00337888999999 99998765544  7999999999999888999999999999999987555555543 347


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      |.++..+  ++.|+.|+.|..+.+||+++-......... +  -.+.     ..++++-|++.-.+.        ++-||
T Consensus       138 Vy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS-~--lkyq-----tR~v~~~pn~eGy~~--------sSieG  199 (323)
T KOG1036|consen  138 VYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRES-S--LKYQ-----TRCVALVPNGEGYVV--------SSIEG  199 (323)
T ss_pred             EEEEecc--CCEEEEeecCceEEEEEcccccchhhhccc-c--ceeE-----EEEEEEecCCCceEE--------Eeecc
Confidence            8888875  668999999999999999875443322111 0  0222     234667786665666        44599


Q ss_pred             eEEEEeCCCC----ceEEEeccC----------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         242 YVQQWDVDSG----RLRLAREMK----------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       242 ~i~~wd~~~~----~~~~~~~~~----------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      .|.+=.+...    .....|+.|          -+|.+++|+|--..|++|+. ||.|.+||+.+.++++
T Consensus       200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs-DG~V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS-DGIVNIWDLFNRKRLK  268 (323)
T ss_pred             eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC-CceEEEccCcchhhhh
Confidence            9888766654    233444444          12889999999899999999 9999999999887653

>KOG0299|consensus

Probab=99.87  E-value=6.4e-21  Score=157.18  Aligned_cols=231  Identities=15%  Similarity=0.180  Sum_probs=166.6

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccc-hhhhhccCCCcccccccCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKD-KENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      |..-+++|+|||+||.|+.++||+........            ...++|.....- .......                
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~------------~~~ghr~~V~~L~fr~gt~~----------------  258 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK------------VFKGHRGAVSSLAFRKGTSE----------------  258 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhh------------cccccccceeeeeeecCccc----------------
Confidence            33467889999999999999999998765321            011111111000 0000111                


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                              ..+++.|+++++ ++.....+.+++ ||.+.|..+....-.+.+.+|+.|+++++|++..- ....+.+|.+
T Consensus       259 --------lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~  328 (479)
T KOG0299|consen  259 --------LYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEG  328 (479)
T ss_pred             --------eeeeecCCceEEEehhHhHHHHHHh-CCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCC
Confidence                    568999999999 788788888898 99999999988877787888889999999999543 3446788999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceE--EEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKY--LFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      .+.|++|-. ...|++|+.+|.|.||++.+.+++.+.....+.....  .-....+..++..|....+++        |+
T Consensus       329 sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as--------GS  399 (479)
T KOG0299|consen  329 SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS--------GS  399 (479)
T ss_pred             CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEe--------cC
Confidence            999999974 4579999999999999999888887765332111110  001113445666777777766        77


Q ss_pred             CCCeEEEEeCCCC----ceEEEeccCCCeEEEEEcCCCCEEEEEec
Q psy3337         239 GISYVQQWDVDSG----RLRLAREMKESLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       239 ~d~~i~~wd~~~~----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  280 (297)
                      .+|.|++|-+..+    +++..+....-|++++|+++|++|++|..
T Consensus       400 ~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  400 WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             CCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence            7999999999875    45556665555999999999998777654

>KOG0772|consensus

Probab=99.87  E-value=3e-21  Score=161.29  Aligned_cols=164  Identities=18%  Similarity=0.197  Sum_probs=128.0

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe--e-eEEeccccC--CeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK--P-LLHIEAHSK--EIDDVDFSISGEQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~-~~~~~~~~~--~v~~~~~sp~~~~l~s~~~d~~v~lwd~~  189 (297)
                      +..-.++.++|+|||++||+|..||.|.+|+..+..  + ...-.+|..  .|++|.||++|++|++-+.|+++++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            445568899999999999999999999999975432  2 223356776  89999999999999999999999999998


Q ss_pred             CC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEE
Q psy3337         190 NG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALA  267 (297)
Q Consensus       190 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~  267 (297)
                      .. +++....+-.        +.-.-..++|||+.+.|++...  +.-+...+.+.+||..+.+.+..+.-... |..+.
T Consensus       395 q~kkpL~~~tgL~--------t~~~~tdc~FSPd~kli~TGtS--~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~  464 (641)
T KOG0772|consen  395 QFKKPLNVRTGLP--------TPFPGTDCCFSPDDKLILTGTS--APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCL  464 (641)
T ss_pred             ccccchhhhcCCC--------ccCCCCccccCCCceEEEeccc--ccCCCCCceEEEEeccceeeEEEecCCCceEEEEe
Confidence            65 3444333211        1111224678999999998754  23355677899999999999988877666 99999


Q ss_pred             EcCCCCEEEEEecCCCeEEEEE
Q psy3337         268 VRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       268 ~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      |+|-=+.|.+|+. ||.++||=
T Consensus       465 WhpkLNQi~~gsg-dG~~~vyY  485 (641)
T KOG0772|consen  465 WHPKLNQIFAGSG-DGTAHVYY  485 (641)
T ss_pred             ecchhhheeeecC-CCceEEEE
Confidence            9998888888888 99998873

>KOG0299|consensus

Probab=99.87  E-value=1.6e-20  Score=154.86  Aligned_cols=178  Identities=15%  Similarity=0.209  Sum_probs=138.8

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~  194 (297)
                      +|...+.+++.|+||++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|--....|++++.|++|++|++.....+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            78888999999999999999999999999999999999999999999999999888888999999999999999876666


Q ss_pred             eeeeccCCCCceEE-------EE------eeeeee------eeeCCCC---eEEEEeccCcccccCCCCeEEEEeCCCCc
Q psy3337         195 KELKWNTPDNIKYL-------FK------RCRYGL------VEDSPKR---SRLFTLANPLAQNKRGISYVQQWDVDSGR  252 (297)
Q Consensus       195 ~~~~~~~~~~~~~~-------~~------~~~~~~------~~~s~~~---~~l~~~~~~~~~~g~~d~~i~~wd~~~~~  252 (297)
                      .++.+|......+.       ++      ..+++.      +-|.+..   ..++.+....+++|+++|.|.+|++...+
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence            67766652211000       00      011111      1122211   12333334478899999999999999888


Q ss_pred             eEEEecc-C------------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         253 LRLAREM-K------------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       253 ~~~~~~~-~------------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ++..... |            ..|++++..|...++++|+. +|.|++|-+..+
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~-~G~vrLW~i~~g  412 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW-SGCVRLWKIEDG  412 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCC-CCceEEEEecCC
Confidence            7766432 1            14899999999999999999 999999998776

>KOG2055|consensus

Probab=99.87  E-value=1e-20  Score=156.06  Aligned_cols=265  Identities=13%  Similarity=0.179  Sum_probs=179.5

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEee----c--------cccccccCCCCchhhhhhccc-------ccchhh
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQ----M--------NGVVKSKESNNTADTIVRKRK-------EKDKEN   61 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~r~-------~~~~~~   61 (297)
                      |+|+-|++....|++||+|+.+|||.+.-....    .        .+....++.. +-..+-|++-       ..+-.+
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~-~i~~s~rrky~ysyDle~ak~~k  294 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHS-VIFTSGRRKYLYSYDLETAKVTK  294 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCce-EEEecccceEEEEeecccccccc
Confidence            578889999999999999999999988532211    1        0111111100 0000001100       001111


Q ss_pred             hhccCCCcccccccCCCCCCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCc
Q psy3337          62 AKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGH  140 (297)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~  140 (297)
                      -+.-.|.+++..+..+..++    .++ ....+..|-|.| ...+++.+.++  .-.+.|..+.|+.+++.|++++.+|.
T Consensus       295 ~~~~~g~e~~~~e~FeVShd----~~f-ia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  295 LKPPYGVEEKSMERFEVSHD----SNF-IAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             ccCCCCcccchhheeEecCC----CCe-EEEcccCceEEeehhhhhhhhhee--eeccEEeeEEEecCCcEEEEEcCCce
Confidence            11122222333333222211    112 234556778888 88899888888  46778999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEeccccCCe--eEEEEccCCCEEEEEeCCCcEEEEEcCC------CceeeeeeccCCCCceEEEEee
Q psy3337         141 LRLWSFPKMKPLLHIEAHSKEI--DDVDFSISGEQIVSIAKDGKAFVWNSKN------GSLSKELKWNTPDNIKYLFKRC  212 (297)
Q Consensus       141 i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~s~~~d~~v~lwd~~~------~~~~~~~~~~~~~~~~~~~~~~  212 (297)
                      |.+||++...+++.+.. .+.|  ++++.++++.+||+|+..|.|.|||..+      .+++..+..-          ..
T Consensus       368 V~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL----------tt  436 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL----------TT  436 (514)
T ss_pred             EEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh----------he
Confidence            99999999998888874 3334  4677778999999999999999999653      2233332211          12


Q ss_pred             eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC----CeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         213 RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE----SLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       213 ~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~----~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                      .+..+.|+||++.|+.++.      -.+..+++..+.+......++...    .|+|++|||.|.+|+.|.. +|.|.+|
T Consensus       437 ~Itsl~Fn~d~qiLAiaS~------~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~  509 (514)
T KOG2055|consen  437 AITSLQFNHDAQILAIASR------VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLF  509 (514)
T ss_pred             eeeeeeeCcchhhhhhhhh------ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC-CCceeeE
Confidence            3556899999998887654      457789999999877776665532    2999999999999999999 9999999


Q ss_pred             EeC
Q psy3337         289 IAF  291 (297)
Q Consensus       289 d~~  291 (297)
                      .+.
T Consensus       510 kL~  512 (514)
T KOG2055|consen  510 KLH  512 (514)
T ss_pred             eec
Confidence            985

>KOG0308|consensus

Probab=99.87  E-value=7.8e-22  Score=168.77  Aligned_cols=195  Identities=14%  Similarity=0.191  Sum_probs=154.6

Q ss_pred             CCCCCCCceEEE-EeeC--CC----eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC--eeeEEeccccC
Q psy3337          90 NSIDSKEKNLRF-GFKT--FD----SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM--KPLLHIEAHSK  160 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~--~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~  160 (297)
                      .-+++.|+.|++ +...  ++    ....+. .|.+.|..+.+..+++.|++++.|.+|++|+...+  -+..++..|.+
T Consensus        40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D  118 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD  118 (735)
T ss_pred             EEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc
Confidence            447899999999 3322  21    244555 89999999999999999999999999999999876  46778899999


Q ss_pred             CeeEEEE-ccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeccCCCCceEE-EEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         161 EIDDVDF-SISGEQIVSIAKDGKAFVWNSKNGS--LSKELKWNTPDNIKYL-FKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       161 ~v~~~~~-sp~~~~l~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      .|.|++. -++..++|+|+.|+.|.+||+.++.  .+..+..-. .. ... -....+.+++.++.|..+++        
T Consensus       119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t-~~-sl~sG~k~siYSLA~N~t~t~ivs--------  188 (735)
T KOG0308|consen  119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT-VN-SLGSGPKDSIYSLAMNQTGTIIVS--------  188 (735)
T ss_pred             hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc-cc-cCCCCCccceeeeecCCcceEEEe--------
Confidence            9999999 7788899999999999999999873  333332111 00 000 01112334667777766665        


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |+..+.|++||.++++.+..+.+|.. |..+..++||+.+++++. ||+|++||+...+++
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-DgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-DGTIRLWDLGQQRCL  248 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC-CceEEeeecccccee
Confidence            77799999999999999999999988 999999999999999999 999999999877665

>KOG1539|consensus

Probab=99.87  E-value=9e-21  Score=166.40  Aligned_cols=160  Identities=15%  Similarity=0.151  Sum_probs=136.6

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe---ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI---EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      ...+++++.++.|++.+.|...|.|-+|++++|-....+   ..|..+|++++...-++.+++++.+|.++.||..+...
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            367899999999999999999999999999999888788   58999999999998889999999999999999988776


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCC
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDG  272 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg  272 (297)
                      +..+....+.           ..+..+.....++.        +.+|-.|+++|..+.+.++.+.+|.. |++++|||||
T Consensus       528 ~~~l~l~~~~-----------~~iv~hr~s~l~a~--------~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  528 KKSLRLGSSI-----------TGIVYHRVSDLLAI--------ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG  588 (910)
T ss_pred             eeeeccCCCc-----------ceeeeeehhhhhhh--------hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence            6666533211           11223444444544        44599999999999999999999988 9999999999


Q ss_pred             CEEEEEecCCCeEEEEEeCCceec
Q psy3337         273 RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +||++++. |++|++||+.++.+|
T Consensus       589 rWlisasm-D~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  589 RWLISASM-DSTIRTWDLPTGTLI  611 (910)
T ss_pred             cEEEEeec-CCcEEEEeccCccee
Confidence            99999999 999999999999875

>KOG1407|consensus

Probab=99.87  E-value=1.3e-20  Score=145.20  Aligned_cols=186  Identities=17%  Similarity=0.178  Sum_probs=152.7

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  166 (297)
                      ..+++-|+++.+ ++..++....+. .+|.+.|-.++|+|. ...|++++.|.+|++||++.++++..+.... .-.-+.
T Consensus        35 lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-eni~i~  113 (313)
T KOG1407|consen   35 LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-ENINIT  113 (313)
T ss_pred             eeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-cceEEE
Confidence            568889999999 777766555544 589999999999984 5799999999999999999999988886443 455789


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      |+|+|.+++.+..|..|...|.++.+.+...+...           ....+.|+.++..++....        .|.|.|.
T Consensus       114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-----------e~ne~~w~~~nd~Fflt~G--------lG~v~IL  174 (313)
T KOG1407|consen  114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-----------EVNEISWNNSNDLFFLTNG--------LGCVEIL  174 (313)
T ss_pred             EcCCCCEEEEecCcccEEEEEecccceeehhcccc-----------eeeeeeecCCCCEEEEecC--------CceEEEE
Confidence            99999999999999999999999887776554321           1223667766666555433        6999999


Q ss_pred             eCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         247 DVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .....+++..++.|.. ..|+.|+|+|++|++|+. |-.+.+||+..+-++
T Consensus       175 sypsLkpv~si~AH~snCicI~f~p~GryfA~GsA-DAlvSLWD~~ELiC~  224 (313)
T KOG1407|consen  175 SYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA-DALVSLWDVDELICE  224 (313)
T ss_pred             eccccccccccccCCcceEEEEECCCCceEeeccc-cceeeccChhHhhhh
Confidence            9999999999999987 899999999999999999 999999998765443

>KOG0310|consensus

Probab=99.87  E-value=2.5e-20  Score=154.78  Aligned_cols=229  Identities=17%  Similarity=0.230  Sum_probs=171.2

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIED   85 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
                      |-.+|+.|+||+..+.+|||++.+...-+  ..       .+.+.+-..-                        . ....
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR--~~-------~ah~apv~~~------------------------~-f~~~  121 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKSRVILR--QL-------YAHQAPVHVT------------------------K-FSPQ  121 (487)
T ss_pred             eecCCeEEEccCCcCcEEEeccccHHHHH--HH-------hhccCceeEE------------------------E-eccc
Confidence            56678999999999999999965522100  00       0000000000                        0 0111


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCC-eeeEEeccccCCe
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKM-KPLLHIEAHSKEI  162 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v  162 (297)
                      ...+..++++|+.+++ ++.+......+. +|+++|.|.+|+|. +.+++||+.||+|++||++.. ..+.++. |..+|
T Consensus       122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pV  199 (487)
T KOG0310|consen  122 DNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPV  199 (487)
T ss_pred             CCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCce
Confidence            1122568999999999 777766544566 99999999999995 468999999999999999876 5666665 89999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      ..+.+-|.|..+++++. ..|++||+-+| +.+..+..|.    .      .+.++.+..++..|++        |+-|+
T Consensus       200 e~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~----K------tVTcL~l~s~~~rLlS--------~sLD~  260 (487)
T KOG0310|consen  200 ESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHN----K------TVTCLRLASDSTRLLS--------GSLDR  260 (487)
T ss_pred             eeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhccc----c------eEEEEEeecCCceEee--------ccccc
Confidence            99999999999999865 47999999855 4444444343    1      2334667778899998        45599


Q ss_pred             eEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         242 YVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      .+++||+.+.+.+..+....+|.+++++|++..++.|.. +|.+.+-+.
T Consensus       261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms-nGlv~~rr~  308 (487)
T KOG0310|consen  261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS-NGLVSIRRR  308 (487)
T ss_pred             ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc-cceeeeehh
Confidence            999999999999999999999999999999999999999 998877643

>KOG0264|consensus

Probab=99.87  E-value=9.9e-21  Score=155.82  Aligned_cols=195  Identities=15%  Similarity=0.244  Sum_probs=149.5

Q ss_pred             CCCCCCCCCCcCCCCCCCceEEE-EeeCCCeE----------EEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeC
Q psy3337          79 KKDKIEDPPILNSIDSKEKNLRF-GFKTFDSV----------QTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSF  146 (297)
Q Consensus        79 ~~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~----------~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~  146 (297)
                      +..+.+..|.+-.+.+..+.+.| |..+....          ..+. ||...-++++|++.. -.|++++.|+.|.+||+
T Consensus       129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi  207 (422)
T KOG0264|consen  129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDI  207 (422)
T ss_pred             hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeeccCCCcEEEEec
Confidence            33455666666667788888988 76543221          1455 898877899999954 57999999999999999


Q ss_pred             CCC-------eeeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCC--CceeeeeeccCCCCceEEEEeeeeee
Q psy3337         147 PKM-------KPLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKN--GSLSKELKWNTPDNIKYLFKRCRYGL  216 (297)
Q Consensus       147 ~~~-------~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (297)
                      ...       .+...+.+|...|..++|+| +..+|++++.|+.+.|||+|+  .++......|.          ..+++
T Consensus       208 ~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~----------~~vn~  277 (422)
T KOG0264|consen  208 NAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS----------AEVNC  277 (422)
T ss_pred             cccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC----------CceeE
Confidence            632       24567889999999999999 556888999999999999995  33334444443          34556


Q ss_pred             eeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC-eEEEEEcCC-CCEEEEEecCCCeEEEEEeCC
Q psy3337         217 VEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES-LSALAVRDD-GRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       217 ~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~~~s~d-g~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++|+|-+..+++       +|+.|++|.+||++. .+++..+.+|+. |.++.|||+ ...|++++. |+.+.|||+..
T Consensus       278 ~~fnp~~~~ilA-------T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~-D~rl~vWDls~  348 (422)
T KOG0264|consen  278 VAFNPFNEFILA-------TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT-DRRLNVWDLSR  348 (422)
T ss_pred             EEeCCCCCceEE-------eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc-CCcEEEEeccc
Confidence            888987665544       267799999999998 667888999988 999999996 456777787 99999999854

>KOG0306|consensus

Probab=99.86  E-value=1.9e-20  Score=162.80  Aligned_cols=186  Identities=15%  Similarity=0.155  Sum_probs=158.6

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC-----CCeeeEEec-------cc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP-----KMKPLLHIE-------AH  158 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~-----~~~~~~~~~-------~~  158 (297)
                      .|...|.+.+ ++.+...+.++. .|++.|+.++.+||+..+++|+.|.+|++||+.     .+.....+.       .-
T Consensus       429 ~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel  507 (888)
T KOG0306|consen  429 LGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL  507 (888)
T ss_pred             EeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence            6777888999 999988888888 999999999999999999999999999999973     122111111       23


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ...|.|+.+|||+++|+.+--|.+|++|-+.+-+..-.+.+|.     +.     +.++..+||++.++|        |+
T Consensus       508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk-----LP-----V~smDIS~DSklivT--------gS  569 (888)
T KOG0306|consen  508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK-----LP-----VLSMDISPDSKLIVT--------GS  569 (888)
T ss_pred             cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc-----cc-----eeEEeccCCcCeEEe--------cc
Confidence            5679999999999999999999999999999888888888885     22     224678999999999        55


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      .|..|++|-+.=|.|...+-+|+. |.++.|-|....+.+++. |+.|+-||-.+++.++
T Consensus       570 ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK-D~kvKqWDg~kFe~iq  628 (888)
T KOG0306|consen  570 ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK-DGKVKQWDGEKFEEIQ  628 (888)
T ss_pred             CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecC-cceEEeechhhhhhhe
Confidence            699999999999999999988877 999999999999999999 9999999988877653

>KOG0293|consensus

Probab=99.86  E-value=4.2e-21  Score=156.47  Aligned_cols=165  Identities=18%  Similarity=0.229  Sum_probs=138.4

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC---eeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM---KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFV  185 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~l  185 (297)
                      .+.+. .|++.|+-+.||++|++||+++.|.+..+|++...   +...++.+|..+|..+.||||.++|++++.|..+.+
T Consensus       217 ~qil~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  217 WQILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            34455 89999999999999999999999999999987543   456788999999999999999999999999999999


Q ss_pred             EEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC-C-e
Q psy3337         186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE-S-L  263 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~-~-v  263 (297)
                      ||+.+|.....+....    .     ....+.+|.|||..+++        |+.|+.|..||+. |..+..+++-. + |
T Consensus       296 wDv~tgd~~~~y~~~~----~-----~S~~sc~W~pDg~~~V~--------Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v  357 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGL----G-----FSVSSCAWCPDGFRFVT--------GSPDRTIIMWDLD-GNILGNWEGVRDPKV  357 (519)
T ss_pred             ccCCcchhhhhcccCc----C-----CCcceeEEccCCceeEe--------cCCCCcEEEecCC-cchhhccccccccee
Confidence            9999998877664321    1     12234779999999988        6779999999998 55666666543 3 9


Q ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         264 SALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       264 ~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      .++++++||+++++.+. |..|++++..+.
T Consensus       358 ~dlait~Dgk~vl~v~~-d~~i~l~~~e~~  386 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVTV-DKKIRLYNREAR  386 (519)
T ss_pred             EEEEEcCCCcEEEEEec-ccceeeechhhh
Confidence            99999999999999999 999999997653

>KOG0639|consensus

Probab=99.86  E-value=6.9e-21  Score=158.78  Aligned_cols=190  Identities=11%  Similarity=0.202  Sum_probs=147.8

Q ss_pred             CCCCCCceEEE-EeeCCCe--EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          91 SIDSKEKNLRF-GFKTFDS--VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      ..|++-.++.| |+.....  ...+. ......++++.+||.+..+++..||.|.|||+.+...++.|++|.+.+.||.+
T Consensus       481 ivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             EeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence            35666667888 6654432  22332 33345678999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeec--------cCCCCceEE----------------------EEeeeeeee
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--------NTPDNIKYL----------------------FKRCRYGLV  217 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~--------~~~~~~~~~----------------------~~~~~~~~~  217 (297)
                      ++||..|-+|+-|.+|+.||+++++.+....+        +.|.+.-..                      ....-+-++
T Consensus       560 s~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSl  639 (705)
T KOG0639|consen  560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSL  639 (705)
T ss_pred             cCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEE
Confidence            99999999999999999999998876544322        112110000                      011113346


Q ss_pred             eeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         218 EDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       218 ~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      .|.+-|+++++.+.        |.-+..|...-|..+........|.++.+|.|.++|++|+. |..-.||.+
T Consensus       640 KFa~cGkwfvStGk--------DnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSG-dkkATVYeV  703 (705)
T KOG0639|consen  640 KFAYCGKWFVSTGK--------DNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSG-DKKATVYEV  703 (705)
T ss_pred             EecccCceeeecCc--------hhhhhhccCccccceeeccccCcceeeeeccCceEEEecCC-CcceEEEEE
Confidence            77888888877555        99999999999998888887778999999999999999999 988888875

>KOG0302|consensus

Probab=99.86  E-value=1.4e-20  Score=151.76  Aligned_cols=183  Identities=13%  Similarity=0.203  Sum_probs=140.8

Q ss_pred             cCCCCCCCceEEE-Eee----------------CCCeEEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCe
Q psy3337          89 LNSIDSKEKNLRF-GFK----------------TFDSVQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMK  150 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~----------------~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~  150 (297)
                      +..+-+..|.|+| ++.                ..+.+.++. +|...=++++|||- -..|++|.--+.|++|...++.
T Consensus       167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~  245 (440)
T KOG0302|consen  167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS  245 (440)
T ss_pred             eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccccCccccceEeeeeccCc
Confidence            3455666777777 432                123455666 88888889999993 2358898888999999988765


Q ss_pred             e---eEEeccccCCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeee--eeccCCCCceEEEEeeeeeeeeeCCCCe
Q psy3337         151 P---LLHIEAHSKEIDDVDFSIS-GEQIVSIAKDGKAFVWNSKNGSLSKE--LKWNTPDNIKYLFKRCRYGLVEDSPKRS  224 (297)
Q Consensus       151 ~---~~~~~~~~~~v~~~~~sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~  224 (297)
                      =   ...|.+|+..|-.|+|||. ...|++++.||+|+|||+|.+.....  .+.|.          ..++.+.|+.+-.
T Consensus       246 W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~----------sDVNVISWnr~~~  315 (440)
T KOG0302|consen  246 WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN----------SDVNVISWNRREP  315 (440)
T ss_pred             eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC----------CceeeEEccCCcc
Confidence            2   3467789999999999994 56899999999999999998732221  13343          2345577888877


Q ss_pred             EEEEeccCcccccCCCCeEEEEeCCC---CceEEEeccCCC-eEEEEEcCC-CCEEEEEecCCCeEEEEEeC
Q psy3337         225 RLFTLANPLAQNKRGISYVQQWDVDS---GRLRLAREMKES-LSALAVRDD-GRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       225 ~l~~~~~~~~~~g~~d~~i~~wd~~~---~~~~~~~~~~~~-v~~~~~s~d-g~~l~~~~~~dg~i~vwd~~  291 (297)
                      +|++        |++||+++|||+++   ++++..+..|.. |+++.|+|. ...|++++. |..|.+||+.
T Consensus       316 lLas--------G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~QitiWDls  378 (440)
T KOG0302|consen  316 LLAS--------GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQITIWDLS  378 (440)
T ss_pred             eeee--------cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcEEEEEee
Confidence            7776        77899999999987   788999999887 999999995 456777777 9999999985

>KOG1332|consensus

Probab=99.86  E-value=1.8e-20  Score=143.09  Aligned_cols=232  Identities=13%  Similarity=0.104  Sum_probs=162.3

Q ss_pred             CCccEEEeccCCceeeEEEeeEEeec-cccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCCCC
Q psy3337           9 GKNIYVVAGQENSNQLYKITAEFTQM-NGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPP   87 (297)
Q Consensus         9 ~~~~~~~~g~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (297)
                      -|..|+++++|+.++||.+....+.. ..+.       +..+|+..+..=.-.+-.                        
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L-------~Gh~GPVwqv~wahPk~G------------------------   70 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAEL-------TGHSGPVWKVAWAHPKFG------------------------   70 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEe-------cCCCCCeeEEeecccccC------------------------
Confidence            36789999999999999998876521 1111       223444444422221111                        


Q ss_pred             CcCCCCCCCceEEEEe-eCCCeEEEEe-cCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCC---eeeEEeccccC
Q psy3337          88 ILNSIDSKEKNLRFGF-KTFDSVQTVF-AGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKM---KPLLHIEAHSK  160 (297)
Q Consensus        88 ~l~~~~~~d~~i~~~~-~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~  160 (297)
                      -+..+.+.|+.|.|+. ++|+..+... ..|...|++++|.|.  |-.|++++.||.|.|.+.++.   .......+|.-
T Consensus        71 ~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~  150 (299)
T KOG1332|consen   71 TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI  150 (299)
T ss_pred             cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence            1256889999999954 4443322222 489999999999995  578999999999999998643   22345678999


Q ss_pred             CeeEEEEccC---C-----------CEEEEEeCCCcEEEEEcCCCc--eeeeeeccCCCCceEEEEeeeeeeeeeCCCC-
Q psy3337         161 EIDDVDFSIS---G-----------EQIVSIAKDGKAFVWNSKNGS--LSKELKWNTPDNIKYLFKRCRYGLVEDSPKR-  223 (297)
Q Consensus       161 ~v~~~~~sp~---~-----------~~l~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-  223 (297)
                      .|++++|.|-   |           ..|++|+.|..|+||+..++.  .-.++..|.          ..+..++|.|.- 
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~----------dwVRDVAwaP~~g  220 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK----------DWVRDVAWAPSVG  220 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc----------hhhhhhhhccccC
Confidence            9999999985   4           569999999999999988763  223455554          123346777763 


Q ss_pred             ---eEEEEeccCcccccCCCCeEEEEeCCCC--ce-EEEecc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         224 ---SRLFTLANPLAQNKRGISYVQQWDVDSG--RL-RLAREM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       224 ---~~l~~~~~~~~~~g~~d~~i~~wd~~~~--~~-~~~~~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                         .+|++        ++.|+++.||-.+..  +- ...+.. ...+..+.||+.|.+|++++. |+.|.+|.-
T Consensus       221 l~~s~iAS--------~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke  285 (299)
T KOG1332|consen  221 LPKSTIAS--------CSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWKE  285 (299)
T ss_pred             CCceeeEE--------ecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC-CcEEEEEEe
Confidence               34555        566999999987641  11 111222 234999999999999999999 999999974

>KOG0268|consensus

Probab=99.85  E-value=4.8e-21  Score=153.76  Aligned_cols=181  Identities=14%  Similarity=0.174  Sum_probs=145.8

Q ss_pred             CCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          90 NSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        90 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      ..+.+.|++|+.|.-.+..+.++. + ...+..+.-+..++.++|||.+  |.|||.+...++..+.--.+.|.++.|+|
T Consensus       122 ~~tvgdDKtvK~wk~~~~p~~til-g-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  122 FFTVGDDKTVKQWKIDGPPLHTIL-G-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             eEEecCCcceeeeeccCCcceeee-c-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCC
Confidence            457788999999666666777775 3 3446677777777889999876  89999988888888887788899999999


Q ss_pred             CC-CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         170 SG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       170 ~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      -. ..|+++..|+.|.|||++.+.+++.+...           .+-+.++|+|.+-.+.+        |++|..++.||+
T Consensus       198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----------mRTN~IswnPeafnF~~--------a~ED~nlY~~Dm  258 (433)
T KOG0268|consen  198 VETSILASCASDRSIVLYDLRQASPLKKVILT-----------MRTNTICWNPEAFNFVA--------ANEDHNLYTYDM  258 (433)
T ss_pred             CcchheeeeccCCceEEEecccCCccceeeee-----------ccccceecCccccceee--------ccccccceehhh
Confidence            54 46777779999999999999888766432           23456899996655555        567999999999


Q ss_pred             CC-CceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         249 DS-GRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       249 ~~-~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +. .+++....+|.. |.+++|||.|+-+++|+. |.+|+||.+..++
T Consensus       259 R~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~~  305 (433)
T KOG0268|consen  259 RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHGH  305 (433)
T ss_pred             hhhcccchhhcccceeEEEeccCCCcchhccccc-cceEEEeecCCCc
Confidence            98 567777777766 999999999999999999 9999999987654

>KOG1273|consensus

Probab=99.85  E-value=4.7e-20  Score=145.72  Aligned_cols=163  Identities=17%  Similarity=0.280  Sum_probs=133.7

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      ..|+.|++.|.+||+|..||.|.|||+.+....+.+.+|..+|++++||++|++|++++.|..|.+||+..|.+++.+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            57999999999999999999999999999888889999999999999999999999999999999999999998888775


Q ss_pred             cCCCC---------ceEEEEeee--eee-------------------------eeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         200 NTPDN---------IKYLFKRCR--YGL-------------------------VEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       200 ~~~~~---------~~~~~~~~~--~~~-------------------------~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      ..|.-         ...+.....  -..                         ..|.+.|+++++        |...|.+
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit--------GtsKGkl  177 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT--------GTSKGKL  177 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE--------ecCcceE
Confidence            54321         011110000  000                         123444555555        7779999


Q ss_pred             EEEeCCCCceEEEeccCC--CeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         244 QQWDVDSGRLRLAREMKE--SLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .++|..+.+++..++-..  .|.++.|+..|++|+.-+. |..|+.|++.
T Consensus       178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-DRvIR~ye~~  226 (405)
T KOG1273|consen  178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-DRVIRTYEIS  226 (405)
T ss_pred             EEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-CceEEEEehh
Confidence            999999999998887655  3999999999999999999 9999999976

>KOG0278|consensus

Probab=99.85  E-value=1.3e-21  Score=149.91  Aligned_cols=193  Identities=19%  Similarity=0.201  Sum_probs=162.9

Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                      ..+..++..+++.|+.-.+ +-.+|..+-++. ||.+.|+...++.+....++++.|-+-++||.-+|..+..|. |...
T Consensus        25 itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhi  102 (334)
T KOG0278|consen   25 ITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHI  102 (334)
T ss_pred             CCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhhe
Confidence            3344445568888998888 899999999999 999999999999998889999999999999999999888886 8999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      |..++|+.|.++|++|+.+..+++||++.. .+...+.+|....          ..+.|....+.+++.+        .|
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I----------r~v~wc~eD~~iLSSa--------dd  164 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI----------RTVLWCHEDKCILSSA--------DD  164 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc----------eeEEEeccCceEEeec--------cC
Confidence            999999999999999999999999999754 3456666664322          2233445555666644        49


Q ss_pred             CeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         241 SYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      ++|++||.+++..+..+.....|+++-+++||++|.++.  .+.|.+||..++.+||
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~--gssV~Fwdaksf~~lK  219 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY--GSSVKFWDAKSFGLLK  219 (334)
T ss_pred             CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec--CceeEEecccccccee
Confidence            999999999999999999988899999999999998887  6899999999988775

>KOG0647|consensus

Probab=99.85  E-value=3.7e-19  Score=139.85  Aligned_cols=178  Identities=12%  Similarity=0.130  Sum_probs=127.9

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC--EEEEEcCCCcEEEEeCCCCeeeEEeccc---------
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAH---------  158 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------  158 (297)
                      .+++-|+.+++ |+.+++.. .+- .|.++|.++.|-+...  .|++|+.|.+|+.||++...++.++.-.         
T Consensus        88 f~g~~Dk~~k~wDL~S~Q~~-~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~  165 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQVS-QVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL  165 (347)
T ss_pred             EeeccCCceEEEEccCCCee-eee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc
Confidence            36788999999 99999654 444 8999999999998765  8999999999999999877665554311         


Q ss_pred             --------------------------------cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeccCCCC
Q psy3337         159 --------------------------------SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG--SLSKELKWNTPDN  204 (297)
Q Consensus       159 --------------------------------~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~~  204 (297)
                                                      .-.+.|++..++....+.|+-.|.+.+..+..+  +.-.+|+.|...+
T Consensus       166 ~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~  245 (347)
T KOG0647|consen  166 YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN  245 (347)
T ss_pred             CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence                                            112456666666555666666666666666544  3334455554221


Q ss_pred             c-eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEec
Q psy3337         205 I-KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       205 ~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~  280 (297)
                      . .-  .--.++.|+|+|.-..|++++.        ||++.+||-.....+...+.+.. |++.+|+.+|.+++-+..
T Consensus       246 ~~~~--~VYaVNsi~FhP~hgtlvTaGs--------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  246 SVND--DVYAVNSIAFHPVHGTLVTAGS--------DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             CCCC--ceEEecceEeecccceEEEecC--------CceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            0 00  0113567999999999999776        99999999988776766666655 999999999999886653

>KOG1408|consensus

Probab=99.85  E-value=1e-19  Score=157.69  Aligned_cols=237  Identities=16%  Similarity=0.122  Sum_probs=179.6

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEee----ccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQ----MNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKN   78 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   78 (297)
                      |...+++|++|++|-.-+.+|||+++.-...    .|..+...-.+                           +++..  
T Consensus       464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey---------------------------S~p~~--  514 (1080)
T KOG1408|consen  464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY---------------------------SFPVL--  514 (1080)
T ss_pred             EEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee---------------------------cCchh--
Confidence            3346788999999999999999999874421    11111111100                           00000  


Q ss_pred             CCCCCCCCCCcCCCCCCCceEEE-Eee-CCCeEEEEecCCCCcEEEEEEecCC--CEEEEEcCCCcEEEEeCCCCeeeEE
Q psy3337          79 KKDKIEDPPILNSIDSKEKNLRF-GFK-TFDSVQTVFAGSESLQRVVRLSRNG--DLMVTGGTDGHLRLWSFPKMKPLLH  154 (297)
Q Consensus        79 ~~~~~~~~~~l~~~~~~d~~i~~-~~~-~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~~~~~  154 (297)
                             .-.|..+++.|+.|.+ |.. +...++++. +|...|+++.|...|  ..+++++.|..|.+--.+.......
T Consensus       515 -------~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~  586 (1080)
T KOG1408|consen  515 -------TNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL  586 (1080)
T ss_pred             -------hhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence                   0124778999999999 764 455677887 999999999999887  7899999998886443332211222


Q ss_pred             eccc-----cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         155 IEAH-----SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       155 ~~~~-----~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      +..|     ...+++++..|...++++++.|..|+|||+.+|+..+.|++...+...++       .+...|.|.||++.
T Consensus       587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-------Kv~lDPSgiY~atS  659 (1080)
T KOG1408|consen  587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-------KVILDPSGIYLATS  659 (1080)
T ss_pred             ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-------EEEECCCccEEEEe
Confidence            2222     24588999999999999999999999999999999999987653321221       25579999999995


Q ss_pred             ccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         230 ANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..        |.+|.++|+.+|+++..+.+|.. |+.+.|++|.+.|++.+. ||.|.||.+..
T Consensus       660 cs--------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg-DgCIFvW~lp~  714 (1080)
T KOG1408|consen  660 CS--------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG-DGCIFVWKLPL  714 (1080)
T ss_pred             ec--------CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecC-CceEEEEECch
Confidence            55        99999999999999999999988 999999999999999999 99999999864

>KOG0268|consensus

Probab=99.84  E-value=8.3e-20  Score=146.70  Aligned_cols=177  Identities=12%  Similarity=0.166  Sum_probs=140.3

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEE
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI  174 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  174 (297)
                      ..|.| |.....+++.+. =-.+.|.++.|+|-. ..|++|+.|+.|.|||+++..++..+. -.-.-+.|+|+|.+-.|
T Consensus       167 e~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF  244 (433)
T KOG0268|consen  167 EQIDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNF  244 (433)
T ss_pred             ceeeecccccCCccceee-cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccce
Confidence            35777 777777888887 445668999999954 788899999999999999998877654 23356789999988889


Q ss_pred             EEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce
Q psy3337         175 VSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       175 ~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                      .+++.|..++.||++.- .++....+|.    .      .+-.+.|+|.|+.+++        |+-|.+|+||....+..
T Consensus       245 ~~a~ED~nlY~~DmR~l~~p~~v~~dhv----s------AV~dVdfsptG~Efvs--------gsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  245 VAANEDHNLYTYDMRNLSRPLNVHKDHV----S------AVMDVDFSPTGQEFVS--------GSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             eeccccccceehhhhhhcccchhhcccc----e------eEEEeccCCCcchhcc--------ccccceEEEeecCCCcc
Confidence            99999999999999853 4455555554    2      2335889999999998        55599999999998765


Q ss_pred             EEEeccC--CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         254 RLAREMK--ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       254 ~~~~~~~--~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ...+-..  ..|.++.||.|.+++++|+. |+.|++|...-.+
T Consensus       307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGSd-d~nvRlWka~Ase  348 (433)
T KOG0268|consen  307 RDIYHTKRMQHVFCVKYSMDSKYIISGSD-DGNVRLWKAKASE  348 (433)
T ss_pred             hhhhhHhhhheeeEEEEeccccEEEecCC-Ccceeeeecchhh
Confidence            5444322  33999999999999999999 9999999876544

>KOG1274|consensus

Probab=99.83  E-value=2.4e-19  Score=159.11  Aligned_cols=178  Identities=13%  Similarity=0.218  Sum_probs=141.7

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc--------ccC
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA--------HSK  160 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~  160 (297)
                      ...|+.|-.|++ +..+......+. +|.++|.++.|+|++++||+.+.||.|++||+.++.....+.+        ...
T Consensus       111 iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~  189 (933)
T KOG1274|consen  111 IAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSR  189 (933)
T ss_pred             EEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccc
Confidence            457889999999 988888888888 9999999999999999999999999999999998876665542        134


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .+.-++|+|++..|+..+.|+.|++|+..+......+.....        ...|..+.|+|.|+||++.        +.+
T Consensus       190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~--------ss~~~~~~wsPnG~YiAAs--------~~~  253 (933)
T KOG1274|consen  190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS--------SSKFSDLQWSPNGKYIAAS--------TLD  253 (933)
T ss_pred             eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc--------ccceEEEEEcCCCcEEeee--------ccC
Confidence            577899999988899999999999999988888877764321        1225568899999999994        459


Q ss_pred             CeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         241 SYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                      +.|.|||+.+-.   .-.....|.+++|-|++.-|-.-.. .|...+|
T Consensus       254 g~I~vWnv~t~~---~~~~~~~Vc~~aw~p~~n~it~~~~-~g~~~~~  297 (933)
T KOG1274|consen  254 GQILVWNVDTHE---RHEFKRAVCCEAWKPNANAITLITA-LGTLGVS  297 (933)
T ss_pred             CcEEEEecccch---hccccceeEEEecCCCCCeeEEEee-ccccccC
Confidence            999999999711   1111123999999999887766555 5554444

>KOG0269|consensus

Probab=99.83  E-value=5.4e-20  Score=160.41  Aligned_cols=183  Identities=19%  Similarity=0.291  Sum_probs=145.4

Q ss_pred             CCCCCCceEEE-EeeC---CCeEEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEE
Q psy3337          91 SIDSKEKNLRF-GFKT---FDSVQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~---~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  165 (297)
                      ...+..|.|.+ |+..   .+.+..+. .|+..|+++.|++- .++|++|+.||+|++||++..+...++.+....|.++
T Consensus       104 AT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV  182 (839)
T KOG0269|consen  104 ATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV  182 (839)
T ss_pred             eeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence            46677788888 7665   34444555 89999999999984 5899999999999999999988888999999999999


Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         166 DFSI-SGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       166 ~~sp-~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|+| .+.+|+++...|.+.+||++.. ++...+..|.    ..++      ++.|+|++.+|++        |+.|+.|
T Consensus       183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~----GpV~------c~nwhPnr~~lAT--------GGRDK~v  244 (839)
T KOG0269|consen  183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHN----GPVL------CLNWHPNREWLAT--------GGRDKMV  244 (839)
T ss_pred             eeccCCCceEEEecCCceEEEeeccCchhHHHHhhccc----CceE------EEeecCCCceeee--------cCCCccE
Confidence            9999 6788999999999999999854 4556666665    2222      3779999999999        6669999


Q ss_pred             EEEeCCCCc--eEEEeccCCCeEEEEEcCCCCE-EEEEecC-CCeEEEEEeCC
Q psy3337         244 QQWDVDSGR--LRLAREMKESLSALAVRDDGRF-VAVGTMF-TGSVFVYIAFS  292 (297)
Q Consensus       244 ~~wd~~~~~--~~~~~~~~~~v~~~~~s~dg~~-l~~~~~~-dg~i~vwd~~~  292 (297)
                      +|||+.+.+  .+.++..-.+|.++.|-|+..+ |++++.- |-.|+|||++.
T Consensus       245 kiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             EEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence            999998744  4445555556999999997665 5554421 67899999874

>KOG0294|consensus

Probab=99.83  E-value=3.3e-19  Score=140.88  Aligned_cols=156  Identities=17%  Similarity=0.287  Sum_probs=130.4

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC--EEEEEeCCCcEEEEEcCCCc
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE--QIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~d~~v~lwd~~~~~  192 (297)
                      .|.+.|++++++  +.++|+|+.|-+|+|||+++...+..+..|.+.|+++.|.+...  .|++|+.||.|.+|+.....
T Consensus        41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~  118 (362)
T KOG0294|consen   41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE  118 (362)
T ss_pred             ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE
Confidence            899999999995  88999999999999999999998999999999999999998765  89999999999999999999


Q ss_pred             eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCC
Q psy3337         193 LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDG  272 (297)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg  272 (297)
                      .+.+++.|.          .+++.++.+|.++.-++++.        |+.+++|++-.|+.-..++.....+.+.|+|.|
T Consensus       119 ~~~slK~H~----------~~Vt~lsiHPS~KLALsVg~--------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G  180 (362)
T KOG0294|consen  119 LLKSLKAHK----------GQVTDLSIHPSGKLALSVGG--------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQG  180 (362)
T ss_pred             Eeeeecccc----------cccceeEecCCCceEEEEcC--------CceeeeehhhcCccceeeccCCcceeeEEcCCC
Confidence            999998875          23556888999999888776        999999999988776665554444557777777


Q ss_pred             CEEEEEecCCCeEEEEEeCC
Q psy3337         273 RFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .+++.+..  ..|-+|.+.+
T Consensus       181 d~F~v~~~--~~i~i~q~d~  198 (362)
T KOG0294|consen  181 DHFVVSGR--NKIDIYQLDN  198 (362)
T ss_pred             CEEEEEec--cEEEEEeccc
Confidence            76666663  4566666554

>KOG1009|consensus

Probab=99.83  E-value=1.2e-18  Score=141.83  Aligned_cols=184  Identities=21%  Similarity=0.240  Sum_probs=133.9

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC--------C--------CeeeEEeccccCCeeEEEEccCCC
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP--------K--------MKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      +..+. .|...|+++.|+|+|..||+|+.+|.|.+|-..        +        ......+.+|...|..++|+|+++
T Consensus        58 ~s~Ls-~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   58 LSSLS-RHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN  136 (434)
T ss_pred             eeccc-CCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence            45555 899999999999999999999999999999765        2        123456778999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCc-------------------eEEEE--------e--------------
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNI-------------------KYLFK--------R--------------  211 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~-------------------~~~~~--------~--------------  211 (297)
                      ++++++.|..+++||+..|+.+..+..|.....                   ...+.        .              
T Consensus       137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  216 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER  216 (434)
T ss_pred             eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence            999999999999999999988777665541000                   00000        0              


Q ss_pred             --------------eeeeeeeeCCCCeEEEEeccC---------------------------------------------
Q psy3337         212 --------------CRYGLVEDSPKRSRLFTLANP---------------------------------------------  232 (297)
Q Consensus       212 --------------~~~~~~~~s~~~~~l~~~~~~---------------------------------------------  232 (297)
                                    .-|..++|+|+|..+++-+.-                                             
T Consensus       217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE  296 (434)
T ss_pred             CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence                          002237788998887765431                                             


Q ss_pred             ----------------cccccCCCCeEEEEeCCCCceEEEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         233 ----------------LAQNKRGISYVQQWDVDSGRLRLAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       233 ----------------~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                                      .++.-.....+++||.++-.++..... |-. |+.++|++||..|+..+. ||...+..+...+
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~-DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSST-DGFCSLVTFEPWE  375 (434)
T ss_pred             eccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEecc-CCceEEEEEcchh
Confidence                            011112234677788777666655543 433 999999999999999999 9988877665543

>KOG0270|consensus

Probab=99.83  E-value=7.6e-19  Score=144.49  Aligned_cols=187  Identities=14%  Similarity=0.188  Sum_probs=140.6

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeee-EEeccccCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~  166 (297)
                      ..+++.|.+|.+ |+.++++..++. .|...|.++.|+|. ...|++|+.|++|.+.|.+..... ..++ ..+.|-.++
T Consensus       259 LaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~  336 (463)
T KOG0270|consen  259 LASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVA  336 (463)
T ss_pred             EEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEE
Confidence            458999999999 999999999998 89999999999995 689999999999999999853322 2232 356799999


Q ss_pred             EccCC-CEEEEEeCCCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         167 FSISG-EQIVSIAKDGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       167 ~sp~~-~~l~s~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      |.|.. ..++++..||+|+-+|+|. ++++.++..|...          +..+++++....+++.       ++.|+.++
T Consensus       337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~----------ISgl~~n~~~p~~l~t-------~s~d~~Vk  399 (463)
T KOG0270|consen  337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE----------ISGLSVNIQTPGLLST-------ASTDKVVK  399 (463)
T ss_pred             ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC----------cceEEecCCCCcceee-------ccccceEE
Confidence            99854 4677888999999999995 4888999888633          2335556655544442       56799999


Q ss_pred             EEeCCCCceEEEecc---CCCeEEEEEcCCCC-EEEEEecCCCeEEEEEeCCceec
Q psy3337         245 QWDVDSGRLRLAREM---KESLSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~---~~~v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +|++..-........   -....|+++.|+-. +++.|+. .+.++|||+.+...+
T Consensus       400 lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~-k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  400 LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE-KAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEeecCCCCcccccccccccceeecccCCCcceEEEecCc-cceEEEeecccChhH
Confidence            999976332211111   12266777888654 5677777 888999999887654

>KOG0303|consensus

Probab=99.83  E-value=1.5e-18  Score=140.96  Aligned_cols=171  Identities=13%  Similarity=0.209  Sum_probs=137.9

Q ss_pred             CeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFV  185 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~l  185 (297)
                      +.+..+. ||...|..++|+|.. +.|++++.|.+|.+|++.+++.+.++. |.+.|+++.|+.+|.+|++.+.|..|+|
T Consensus       122 epvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv  199 (472)
T KOG0303|consen  122 EPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRV  199 (472)
T ss_pred             cceEEEe-ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEE
Confidence            3466677 999999999999965 889999999999999999999988888 9999999999999999999999999999


Q ss_pred             EEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-c--eEEEeccCCC
Q psy3337         186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-R--LRLAREMKES  262 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-~--~~~~~~~~~~  262 (297)
                      ||.++++.+..-.+|.......         +-|-.++. +++.+.    +...+..+-+||...- +  ....+.....
T Consensus       200 ~dpr~~~~v~e~~~heG~k~~R---------aifl~~g~-i~tTGf----sr~seRq~aLwdp~nl~eP~~~~elDtSnG  265 (472)
T KOG0303|consen  200 IDPRRGTVVSEGVAHEGAKPAR---------AIFLASGK-IFTTGF----SRMSERQIALWDPNNLEEPIALQELDTSNG  265 (472)
T ss_pred             EcCCCCcEeeecccccCCCcce---------eEEeccCc-eeeecc----ccccccceeccCcccccCcceeEEeccCCc
Confidence            9999999998887775332111         22455676 555544    3567899999998762 2  3344555556


Q ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         263 LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       263 v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      |.-.-|.+|...|..++..|+.|+.|.+..-
T Consensus       266 vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  266 VLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            8888889999988777766999999998653

>KOG1332|consensus

Probab=99.82  E-value=3.3e-19  Score=136.31  Aligned_cols=190  Identities=16%  Similarity=0.175  Sum_probs=141.5

Q ss_pred             CCCCCCCceEEE-EeeCC---CeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCe--eeEEeccccCC
Q psy3337          90 NSIDSKEKNLRF-GFKTF---DSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMK--PLLHIEAHSKE  161 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~---~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~  161 (297)
                      ..+.+.|++|+| ...+.   +.+.+|. ||.++|..++|..  -|.+||+++.||.|.||.-++++  .......|...
T Consensus        26 lATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~S  104 (299)
T KOG1332|consen   26 LATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSAS  104 (299)
T ss_pred             eeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccc
Confidence            668889999999 76554   3566777 9999999999976  78999999999999999987764  45567789999


Q ss_pred             eeEEEEccC--CCEEEEEeCCCcEEEEEcCCC-ce-e-eeeeccCCCCceEEEEeeeeeeeeeCCC---CeEEEEecc--
Q psy3337         162 IDDVDFSIS--GEQIVSIAKDGKAFVWNSKNG-SL-S-KELKWNTPDNIKYLFKRCRYGLVEDSPK---RSRLFTLAN--  231 (297)
Q Consensus       162 v~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~--  231 (297)
                      |++++|-|.  |-.|++++.||.|.|.+.++. .- . .....|..          .+++++|.|-   |..+-....  
T Consensus       105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~----------GvnsVswapa~~~g~~~~~~~~~~  174 (299)
T KOG1332|consen  105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI----------GVNSVSWAPASAPGSLVDQGPAAK  174 (299)
T ss_pred             ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc----------ccceeeecCcCCCccccccCcccc
Confidence            999999985  568899999999999988743 11 1 12223331          2334556554   311100000  


Q ss_pred             -CcccccCCCCeEEEEeCCCC--ceEEEeccCCC-eEEEEEcCCC----CEEEEEecCCCeEEEEEeC
Q psy3337         232 -PLAQNKRGISYVQQWDVDSG--RLRLAREMKES-LSALAVRDDG----RFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       232 -~~~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~-v~~~~~s~dg----~~l~~~~~~dg~i~vwd~~  291 (297)
                       -.+++|.-|..|+||+...+  .....+.+|.. |+.++|.|.-    .+|++++. ||+|.||-..
T Consensus       175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq-Dg~viIwt~~  241 (299)
T KOG1332|consen  175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ-DGTVIIWTKD  241 (299)
T ss_pred             cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC-CCcEEEEEec
Confidence             02444777999999999875  34456888888 9999999953    47999999 9999999765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.82  E-value=8.8e-18  Score=140.73  Aligned_cols=185  Identities=12%  Similarity=0.119  Sum_probs=141.5

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      ..+++.|+.+++ +..+++.+..+. .+.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+.. +..++|
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~~~~~~-~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~   80 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEVTRTFP-VGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL   80 (300)
T ss_pred             EEEecCCCEEEEEECCCCceEEEEE-CCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence            345678899999 998998888886 5544 5789999999876 5677899999999999888777765543 578899


Q ss_pred             ccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         168 SISGEQIVSI-AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       168 sp~~~~l~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      +|+++.++++ ..|+.+++||+.+++.+..+....           ....++++|++..+++...       ....+..|
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~dg~~l~~~~~-------~~~~~~~~  142 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV-----------EPEGMAVSPDGKIVVNTSE-------TTNMAHFI  142 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC-----------CcceEEECCCCCEEEEEec-------CCCeEEEE
Confidence            9999977655 568999999999877766664221           1123778999999888543       12457788


Q ss_pred             eCCCCceEEEeccCCCeEEEEEcCCCCEEEEE-ecCCCeEEEEEeCCceec
Q psy3337         247 DVDSGRLRLAREMKESLSALAVRDDGRFVAVG-TMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~~dg~i~vwd~~~~~~~  296 (297)
                      |..+++....+.....+.+++|+|+|++|+++ .. ++.|++||+.+++.+
T Consensus       143 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~i~d~~~~~~~  192 (300)
T TIGR03866       143 DTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI-GGTVSVIDVATRKVI  192 (300)
T ss_pred             eCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC-CCEEEEEEcCcceee
Confidence            99988776655544457889999999988654 45 899999999987653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273|consensus

Probab=99.82  E-value=8.4e-19  Score=138.69  Aligned_cols=201  Identities=15%  Similarity=0.217  Sum_probs=147.4

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++-|.+||.|..|+.+-||++......                                                
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia------------------------------------------------   58 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA------------------------------------------------   58 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccchh------------------------------------------------
Confidence            68889999999999999999999998775421                                                


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                                                  +.+. +|..+|++++||+||+.|++++.|..|.+||+..|.+++.+.- ..+
T Consensus        59 ----------------------------r~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~sp  108 (405)
T KOG1273|consen   59 ----------------------------RMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSP  108 (405)
T ss_pred             ----------------------------hhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCc
Confidence                                        2333 8999999999999999999999999999999988877665531 112


Q ss_pred             eeEE-----------------------------------------------EEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy3337         162 IDDV-----------------------------------------------DFSISGEQIVSIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       162 v~~~-----------------------------------------------~~sp~~~~l~s~~~d~~v~lwd~~~~~~~  194 (297)
                      |+..                                               .|.+.|+++++|...|.+.++|..+-+++
T Consensus       109 v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v  188 (405)
T KOG1273|consen  109 VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV  188 (405)
T ss_pred             cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence            2222                                               24455777888888888888888777777


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-------CceE--EEecc---CCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-------GRLR--LAREM---KES  262 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-------~~~~--~~~~~---~~~  262 (297)
                      ..++...         ...+..+.++..|..++.-..        |+.|+.|++..       +++.  ..+..   .-.
T Consensus       189 as~rits---------~~~IK~I~~s~~g~~liiNts--------DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  189 ASFRITS---------VQAIKQIIVSRKGRFLIINTS--------DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             eeeeech---------heeeeEEEEeccCcEEEEecC--------CceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            6665332         123445677888988888554        99999999873       1111  11110   112


Q ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         263 LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       263 v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      -.+++||.+|.|++.++...-.++||.-..|.++|
T Consensus       252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK  286 (405)
T KOG1273|consen  252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK  286 (405)
T ss_pred             hhheeecCCccEEEeccccceeEEEEecCCcceee
Confidence            56889999999999888746789999998887764

>KOG1034|consensus

Probab=99.82  E-value=5.9e-19  Score=140.20  Aligned_cols=205  Identities=18%  Similarity=0.293  Sum_probs=144.3

Q ss_pred             CCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEe---cccc
Q psy3337          85 DPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHI---EAHS  159 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~  159 (297)
                      ..|+|..+| .-|.|++ |+.++++...+. +|...|+.+.+.|+. +++++++.|..|++|++++..++..|   .+|.
T Consensus       104 ~~p~la~~G-~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr  181 (385)
T KOG1034|consen  104 GNPFLAAGG-YLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR  181 (385)
T ss_pred             CCeeEEeec-ceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence            345555544 8899999 999999999998 999999999999975 89999999999999999999988776   5799


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee------------------ccCCCCc----------------
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK------------------WNTPDNI----------------  205 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~------------------~~~~~~~----------------  205 (297)
                      +.|.++.|++++.+|++++.|.++++|++...+....+.                  .|-|+-.                
T Consensus       182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g  261 (385)
T KOG1034|consen  182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG  261 (385)
T ss_pred             CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh
Confidence            999999999999999999999999999997332111100                  0001100                


Q ss_pred             eEEEE-eeeeeeeeeCC-------------CCe--EEEEe-------------cc---CcccccCCCCeEEEEeCCCCce
Q psy3337         206 KYLFK-RCRYGLVEDSP-------------KRS--RLFTL-------------AN---PLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       206 ~~~~~-~~~~~~~~~s~-------------~~~--~l~~~-------------~~---~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                      .++++ +|.-.-++|-|             ++.  .+...             ..   ..++.|...|.|.+||++..++
T Consensus       262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            00000 00001122222             000  00000             00   1456688899999999998544


Q ss_pred             E--EEeccC---CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         254 R--LAREMK---ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       254 ~--~~~~~~---~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .  .++..+   ..|+..+||.||.+|+..+. |++|.-||..+
T Consensus       342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd-d~~Vwrwdrv~  384 (385)
T KOG1034|consen  342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD-DGTVWRWDRVS  384 (385)
T ss_pred             ccCceEEeccccceeeeeeecccCcEEEEEeC-CCcEEEEEeec
Confidence            2  223222   23999999999999999999 99999999643

>KOG4283|consensus

Probab=99.81  E-value=3.9e-18  Score=133.86  Aligned_cols=235  Identities=13%  Similarity=0.209  Sum_probs=166.6

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIED   85 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
                      |.-+.+.+.++.=|+.++||+.+.......-.++.          +.-+.+-++...                       
T Consensus       110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~----------~VYshamSp~a~-----------------------  156 (397)
T KOG4283|consen  110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG----------KVYSHAMSPMAM-----------------------  156 (397)
T ss_pred             eeecCceeecccccceEEEeecccceeeEEeecCc----------eeehhhcChhhh-----------------------
Confidence            33477888888999999999998765432111110          001111111111                       


Q ss_pred             CCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCC-eeeEEe-------
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKM-KPLLHI-------  155 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~-~~~~~~-------  155 (297)
                      .-.|-.++..|-.|++ |+.+|.+.+++. ||.+.|.++.|+|... .|++|+.||.|++||++.- .+...+       
T Consensus       157 sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~  235 (397)
T KOG4283|consen  157 SHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR  235 (397)
T ss_pred             cceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence            0112347888889999 999999999999 9999999999999775 5789999999999999643 222222       


Q ss_pred             -------ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC--CCCceEEEEeeeeeeeeeCCCCeEE
Q psy3337         156 -------EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT--PDNIKYLFKRCRYGLVEDSPKRSRL  226 (297)
Q Consensus       156 -------~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l  226 (297)
                             .+|.+.|.+++|..++.++++.+.|..+++|+..+|+....-.++.  .....+.+.      +. +.+...+
T Consensus       236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~------~~-~~~s~vf  308 (397)
T KOG4283|consen  236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH------IQ-SMDSDVF  308 (397)
T ss_pred             CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE------Ee-ecccceE
Confidence                   3577889999999999999999999999999998875432211110  000011111      11 2333334


Q ss_pred             EEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         227 FTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       227 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +....        ++.+.++.+-++..++.+..|.. |.+..+.|+=+...+|.. |+.|..|-.
T Consensus       309 v~~p~--------~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~-d~ni~~w~p  364 (397)
T KOG4283|consen  309 VLFPN--------DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM-NGNIYMWSP  364 (397)
T ss_pred             EEEec--------CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc-CCccccccc
Confidence            44333        68999999999999999999866 999999999899999999 999999976

>KOG0302|consensus

Probab=99.80  E-value=5.6e-18  Score=136.88  Aligned_cols=177  Identities=13%  Similarity=0.255  Sum_probs=128.3

Q ss_pred             CCCCceEEE-EeeCCCeEE---EEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCe--eeEEeccccCCeeEE
Q psy3337          93 DSKEKNLRF-GFKTFDSVQ---TVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMK--PLLHIEAHSKEIDDV  165 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~---~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~  165 (297)
                      |.--+.|++ .+.+|....   .+ .+|+..|-.++|||. ...|++|+-|++|+|||++.+.  .....++|...|+.|
T Consensus       230 GDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI  308 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI  308 (440)
T ss_pred             CccccceEeeeeccCceeecCccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence            334456777 566655332   23 389999999999995 4789999999999999999873  233448899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCC---CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKN---GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      .|+....+||+|+.||+++|||++.   ++++..++.|.          ..+.++.|+|....++.+       ++.|..
T Consensus       309 SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk----------~pItsieW~p~e~s~iaa-------sg~D~Q  371 (440)
T KOG0302|consen  309 SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK----------APITSIEWHPHEDSVIAA-------SGEDNQ  371 (440)
T ss_pred             EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc----------CCeeEEEeccccCceEEe-------ccCCCc
Confidence            9999888999999999999999984   45677777664          345568899976555543       456999


Q ss_pred             EEEEeCCCC-------------------ceEEEeccCCCeEEEEEcCCC-CEEEEEecCCCeEEEEE
Q psy3337         243 VQQWDVDSG-------------------RLRLAREMKESLSALAVRDDG-RFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       243 i~~wd~~~~-------------------~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~~dg~i~vwd  289 (297)
                      |.+||+...                   +++..-.+...+..+.|+++- .+|++.+. || +.||.
T Consensus       372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~-dG-fnVfk  436 (440)
T KOG0302|consen  372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI-DG-FNVFK  436 (440)
T ss_pred             EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc-cc-eeEEE
Confidence            999998631                   122222334448899999853 45555555 66 44443

>KOG2096|consensus

Probab=99.80  E-value=3.5e-18  Score=135.43  Aligned_cols=161  Identities=19%  Similarity=0.227  Sum_probs=121.5

Q ss_pred             EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe------------------------------------eeE
Q psy3337         110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK------------------------------------PLL  153 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~------------------------------------~~~  153 (297)
                      ..+. +|...|++++|+.||++|++++.|+.|++|+++...                                    .+.
T Consensus        80 ~~LK-gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLK-GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhh-ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4455 999999999999999999999999999999964211                                    011


Q ss_pred             Eec-----------------------cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEE
Q psy3337         154 HIE-----------------------AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFK  210 (297)
Q Consensus       154 ~~~-----------------------~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  210 (297)
                      .+.                       .|.-.+..+-....+.+|++++.|..|.||+++ |+.+..+......       
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------  230 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------  230 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------
Confidence            010                       122234444444567789999999999999997 8888777654311       


Q ss_pred             eeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC---C-----ceEEEeccCCC-eEEEEEcCCCCEEEEEecC
Q psy3337         211 RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS---G-----RLRLAREMKES-LSALAVRDDGRFVAVGTMF  281 (297)
Q Consensus       211 ~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~---~-----~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~  281 (297)
                         ....+.||+|+++++++.        ...+++|.+--   |     ..+..+.+|.. |..++|+++.+.+++.+. 
T Consensus       231 ---n~~aavSP~GRFia~~gF--------TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk-  298 (420)
T KOG2096|consen  231 ---NYDAAVSPDGRFIAVSGF--------TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK-  298 (420)
T ss_pred             ---ccceeeCCCCcEEEEecC--------CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec-
Confidence               112456999999999887        77899998632   2     23456788887 999999999999999999 


Q ss_pred             CCeEEEEEeC
Q psy3337         282 TGSVFVYIAF  291 (297)
Q Consensus       282 dg~i~vwd~~  291 (297)
                      ||+++|||..
T Consensus       299 DG~wriwdtd  308 (420)
T KOG2096|consen  299 DGKWRIWDTD  308 (420)
T ss_pred             CCcEEEeecc
Confidence            9999999974

>KOG0303|consensus

Probab=99.80  E-value=1.4e-18  Score=141.07  Aligned_cols=162  Identities=15%  Similarity=0.242  Sum_probs=134.7

Q ss_pred             cCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCC-------eeeEEeccccCCeeEEEEccC-CCEEEEEeCCCcEE
Q psy3337         114 AGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKM-------KPLLHIEAHSKEIDDVDFSIS-GEQIVSIAKDGKAF  184 (297)
Q Consensus       114 ~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~d~~v~  184 (297)
                      .||+++|..++|+| +.+.+|+|+.|.+|.||++..+       +++..|.+|...|--++|+|. .+.|++++.|.+|.
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence            48999999999999 5689999999999999998643       457788999999999999995 56889999999999


Q ss_pred             EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC--
Q psy3337         185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES--  262 (297)
Q Consensus       185 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~--  262 (297)
                      +|++.+|+.+.++. |.    ..+      .++.|+.||.++++...        |..|+|||.++++++..-..|..  
T Consensus       158 iWnv~tgeali~l~-hp----d~i------~S~sfn~dGs~l~Ttck--------DKkvRv~dpr~~~~v~e~~~heG~k  218 (472)
T KOG0303|consen  158 IWNVGTGEALITLD-HP----DMV------YSMSFNRDGSLLCTTCK--------DKKVRVIDPRRGTVVSEGVAHEGAK  218 (472)
T ss_pred             EEeccCCceeeecC-CC----CeE------EEEEeccCCceeeeecc--------cceeEEEcCCCCcEeeecccccCCC
Confidence            99999999888877 43    233      34779999999999555        99999999999999988877765  


Q ss_pred             eEEEEEcCCCCEEEEEecC--CCeEEEEEeCCce
Q psy3337         263 LSALAVRDDGRFVAVGTMF--TGSVFVYIAFSLQ  294 (297)
Q Consensus       263 v~~~~~s~dg~~l~~~~~~--dg~i~vwd~~~~~  294 (297)
                      ...+.|-.+|.++.+|-..  +..+-+||...++
T Consensus       219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLE  252 (472)
T ss_pred             cceeEEeccCceeeeccccccccceeccCccccc
Confidence            6667788888866555421  6789999977654

>KOG2048|consensus

Probab=99.79  E-value=3.8e-17  Score=140.90  Aligned_cols=242  Identities=12%  Similarity=0.107  Sum_probs=177.1

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEee-ccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQ-MNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      +.|..|+...+.||.+-.|+.+.+|++...... ......+.    +.-++.-.-       +...              
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d----rsIE~L~W~-------e~~R--------------   82 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED----RSIESLAWA-------EGGR--------------   82 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC----CceeeEEEc-------cCCe--------------
Confidence            346678888899999999999999999875532 11111010    000111000       0000              


Q ss_pred             CCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE--Eec
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL--HIE  156 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~--~~~  156 (297)
                                .-+.+-+++|.- |+.+++....+. ...+.|++++.+|.+..++.|+.||.++.++...++...  .|.
T Consensus        83 ----------LFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~  151 (691)
T KOG2048|consen   83 ----------LFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM  151 (691)
T ss_pred             ----------EEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence                      335666778877 999999988887 788899999999999999999999988888887776543  444


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC---CCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT---PDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      -.++.|.+++|+|++..+++|+.||.|++||..++..+....-..   ......+     ++.+.+-.++         .
T Consensus       152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i-----VWSv~~Lrd~---------t  217 (691)
T KOG2048|consen  152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI-----VWSVLFLRDS---------T  217 (691)
T ss_pred             cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE-----EEEEEEeecC---------c
Confidence            456899999999999999999999999999999887766222110   0000111     2233333333         3


Q ss_pred             ccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         234 AQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +++|...|+|.+||...+.++..+..|.. |.+++..+++.++++++. |+.|..|...+.
T Consensus       218 I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv-d~~ii~~~~~~~  277 (691)
T KOG2048|consen  218 IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV-DPKIIQYSLTTN  277 (691)
T ss_pred             EEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC-CCceEEEEecCC
Confidence            33477799999999999999999999888 999999999999999999 999998887665

>KOG1408|consensus

Probab=99.79  E-value=8.8e-18  Score=145.83  Aligned_cols=192  Identities=15%  Similarity=0.202  Sum_probs=152.8

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC---CCEEEEEcCCCcEEEEeCC-CCeeeEEeccccCCeeE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN---GDLMVTGGTDGHLRLWSFP-KMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~  164 (297)
                      ..+|..-|.+++ ++..-+....+. .|+..|.|+.||..   .++||+++.|..|.+||+. +..++.++.+|...|++
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs  552 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS  552 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence            567888899999 998888877777 99999999999862   4789999999999999985 45678899999999999


Q ss_pred             EEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         165 VDFSISG--EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       165 ~~~sp~~--~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      +.|-..|  ..+++++.|+.|..--.+.......+..|.     -......+..++..|..++++++..        |..
T Consensus       553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t-----~t~~ktTlYDm~Vdp~~k~v~t~cQ--------Drn  619 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHT-----QTLSKTTLYDMAVDPTSKLVVTVCQ--------DRN  619 (1080)
T ss_pred             EEEeecCCceEEEeccCchhhheehhccccCceeccccc-----cccccceEEEeeeCCCcceEEEEec--------ccc
Confidence            9998876  678999999877543222111112222221     1112223445788999999999665        999


Q ss_pred             EEEEeCCCCceEEEecc---CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         243 VQQWDVDSGRLRLAREM---KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~~---~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |+|||+.+|+....|++   ++. ...+...|.|.||++.+. |.++.++|.-+++++
T Consensus       620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCFVDFVSGECV  676 (1080)
T ss_pred             eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEEEEeccchhh
Confidence            99999999999999987   333 788999999999999999 999999999999875

>KOG2919|consensus

Probab=99.79  E-value=1.1e-17  Score=132.74  Aligned_cols=244  Identities=12%  Similarity=0.093  Sum_probs=172.6

Q ss_pred             eeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccC--------
Q psy3337           5 VHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKG--------   76 (297)
Q Consensus         5 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--------   76 (297)
                      -.+++|.-|++-..|+..++|++..+......+.....                         ++..+....        
T Consensus        56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~-------------------------~~~~~~r~~eg~tvydy  110 (406)
T KOG2919|consen   56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNF-------------------------SKHLSYRYQEGETVYDY  110 (406)
T ss_pred             eeCCCCceEEeecccCeeeEEecChhhcccCCCCcccc-------------------------ccceeEEeccCCEEEEE
Confidence            36889999999999999999999887655322111110                         000000000        


Q ss_pred             --CCCCCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEe-cCCCCc---EEEEEEecCCCEEEEEcCCCcEEEEeC-CC
Q psy3337          77 --KNKKDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVF-AGSESL---QRVVRLSRNGDLMVTGGTDGHLRLWSF-PK  148 (297)
Q Consensus        77 --~~~~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~-~~h~~~---v~~~~~s~~g~~l~s~~~d~~i~iwd~-~~  148 (297)
                        ...-....++.-|..+.+.+..|++ |.-+|+....+. ..|.+.   ..+++|+|||.+|++| ....|++||+ +.
T Consensus       111 ~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~Rp  189 (406)
T KOG2919|consen  111 CWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRP  189 (406)
T ss_pred             EeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCC
Confidence              0000122233344568889999999 999998877766 345444   3689999999999887 6778999999 55


Q ss_pred             Cee--eEEec-----cccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeC
Q psy3337         149 MKP--LLHIE-----AHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDS  220 (297)
Q Consensus       149 ~~~--~~~~~-----~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  220 (297)
                      |..  +....     +..+.+.+++|+| +...++.++....+-||.-..+.++..+-+|..          .+..+.|.
T Consensus       190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g----------GvThL~~~  259 (406)
T KOG2919|consen  190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG----------GVTHLQWC  259 (406)
T ss_pred             CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC----------CeeeEEec
Confidence            542  22222     2366789999999 556899999988888888778888888877652          34458899


Q ss_pred             CCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC----eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         221 PKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES----LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       221 ~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~----v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++|..|++.+.       .+-.|..||++. +.++..+..|-.    -.-....|+|++|++|+. ||.|++||+..
T Consensus       260 edGn~lfsGaR-------k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t-dG~V~vwdlk~  328 (406)
T KOG2919|consen  260 EDGNKLFSGAR-------KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT-DGSVRVWDLKD  328 (406)
T ss_pred             cCcCeeccccc-------CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC-CccEEEEecCC
Confidence            99999998543       577999999997 566666655422    234456789999999999 99999999987

>KOG0270|consensus

Probab=99.79  E-value=2.9e-18  Score=141.13  Aligned_cols=159  Identities=17%  Similarity=0.251  Sum_probs=131.3

Q ss_pred             CCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q psy3337         115 GSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~  192 (297)
                      +|++.|.+++|+..- +.||+|+.|.+|++||+.++++..++..|...|.++.|+| ...+|++|+.|++|.+.|.|...
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~  320 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS  320 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence            799999999998864 7899999999999999999999999999999999999999 56789999999999999998421


Q ss_pred             e-eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC-eEEEEEc
Q psy3337         193 L-SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES-LSALAVR  269 (297)
Q Consensus       193 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~~~s  269 (297)
                      . -.          .+. -...+-.++|.|.....+.+       +..||+|+-+|+|. ++++.++..|.. |.+++++
T Consensus       321 ~s~~----------~wk-~~g~VEkv~w~~~se~~f~~-------~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n  382 (463)
T KOG0270|consen  321 NSGK----------EWK-FDGEVEKVAWDPHSENSFFV-------STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN  382 (463)
T ss_pred             ccCc----------eEE-eccceEEEEecCCCceeEEE-------ecCCceEEeeecCCCCCceeEEEeccCCcceEEec
Confidence            1 11          111 12344567888877665554       56799999999998 699999999988 9999998


Q ss_pred             CCC-CEEEEEecCCCeEEEEEeCC
Q psy3337         270 DDG-RFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       270 ~dg-~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +.- .+|++++. |+.|++|++.-
T Consensus       383 ~~~p~~l~t~s~-d~~Vklw~~~~  405 (463)
T KOG0270|consen  383 IQTPGLLSTAST-DKVVKLWKFDV  405 (463)
T ss_pred             CCCCcceeeccc-cceEEEEeecC
Confidence            854 56788888 99999999753

>KOG0642|consensus

Probab=99.79  E-value=7.2e-18  Score=142.61  Aligned_cols=176  Identities=18%  Similarity=0.274  Sum_probs=135.0

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-------C---eeeEEeccccCCeeEEEEccCCCEEEE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-------M---KPLLHIEAHSKEIDDVDFSISGEQIVS  176 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-------~---~~~~~~~~~~~~v~~~~~sp~~~~l~s  176 (297)
                      +.+.++. +|.++|.|+++.+++..+++|+.||+|+.|++..       .   .....+.+|.+.|+.+++|+....|++
T Consensus       335 epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls  413 (577)
T KOG0642|consen  335 EPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS  413 (577)
T ss_pred             eeeEEEe-cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence            4577888 9999999999999999999999999999996641       1   133578899999999999999889999


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeccCCCCc--eEEEE----------------------------------------eeee
Q psy3337         177 IAKDGKAFVWNSKNGSLSKELKWNTPDNI--KYLFK----------------------------------------RCRY  214 (297)
Q Consensus       177 ~~~d~~v~lwd~~~~~~~~~~~~~~~~~~--~~~~~----------------------------------------~~~~  214 (297)
                      ++.||++++|+.....+ .++......+.  .+.+.                                        ...+
T Consensus       414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i  492 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI  492 (577)
T ss_pred             ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc
Confidence            99999999999865544 22211100000  00000                                        0122


Q ss_pred             eeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         215 GLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       215 ~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +.+.++|.....++        +..++.|+++|..++.++.....|.. ++++++.|+|.+|++++. |+.+++|.+..-
T Consensus       493 n~vVs~~~~~~~~~--------~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~-d~sv~l~kld~k  563 (577)
T KOG0642|consen  493 NKVVSHPTADITFT--------AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH-DGSVRLWKLDVK  563 (577)
T ss_pred             ceEEecCCCCeeEe--------cccCCceecccccccccchheeeccceecceeecCCCceEEeecC-Cceeehhhccch
Confidence            33555566555555        55699999999999999998888776 999999999999999999 999999988543

>KOG0771|consensus

Probab=99.79  E-value=1.8e-18  Score=141.60  Aligned_cols=164  Identities=38%  Similarity=0.572  Sum_probs=128.0

Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeecc
Q psy3337         121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWN  200 (297)
Q Consensus       121 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~  200 (297)
                      .+++|+++|..|++|+.||++|+|+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.++|..+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t--  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT--  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence            689999999999999999999999988888888888899999999999999999999999 89999999996665553  


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC------CceEEEeccCCCeEEEEEcCCCCE
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS------GRLRLAREMKESLSALAVRDDGRF  274 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~------~~~~~~~~~~~~v~~~~~s~dg~~  274 (297)
                       |....+.+..|+|....-. +.-++++...       .-+.|+.||+..      .+....+..++.|+++++++||++
T Consensus       225 -~~~k~~~~~~cRF~~d~~~-~~l~laa~~~-------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  225 -PFSKDEMFSSCRFSVDNAQ-ETLRLAASQF-------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF  295 (398)
T ss_pred             -CcccchhhhhceecccCCC-ceEEEEEecC-------CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence             3334667777777543322 2334444333       244555555543      233334445667999999999999


Q ss_pred             EEEEecCCCeEEEEEeCCceecC
Q psy3337         275 VAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       275 l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      ++.|+. ||.|.|+++.++++++
T Consensus       296 ~AlGT~-dGsVai~~~~~lq~~~  317 (398)
T KOG0771|consen  296 LALGTM-DGSVAIYDAKSLQRLQ  317 (398)
T ss_pred             EEEecc-CCcEEEEEeceeeeeE
Confidence            999999 9999999999988763

>KOG0646|consensus

Probab=99.79  E-value=6.4e-18  Score=139.88  Aligned_cols=163  Identities=25%  Similarity=0.366  Sum_probs=134.1

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC-----
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK-----  189 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~-----  189 (297)
                      --.++|.|++-+|+|.+|+.|+..+.|++|.+.+|..+..+.+|...|+++.|+-|+.+|++|+.||.|.+|++-     
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            346679999999999999999999999999999999999999999999999999999999999999999999863     


Q ss_pred             ----CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEE
Q psy3337         190 ----NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSA  265 (297)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~  265 (297)
                          +-++++.+..|.     ..++..   .+.+.+-..+|++++.        |.++++||+..|.++..+.-+..+.+
T Consensus       159 ~~~~~~~p~~~f~~Ht-----lsITDl---~ig~Gg~~~rl~TaS~--------D~t~k~wdlS~g~LLlti~fp~si~a  222 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHT-----LSITDL---QIGSGGTNARLYTASE--------DRTIKLWDLSLGVLLLTITFPSSIKA  222 (476)
T ss_pred             ccCCCccceeeeccCc-----ceeEEE---EecCCCccceEEEecC--------CceEEEEEeccceeeEEEecCCccee
Confidence                223445555553     111111   1122334456777554        99999999999999999988888999


Q ss_pred             EEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         266 LAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       266 ~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++++|-++.+.+|+. +|.|.+.++.+..
T Consensus       223 v~lDpae~~~yiGt~-~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  223 VALDPAERVVYIGTE-EGKIFQNLLFKLS  250 (476)
T ss_pred             EEEcccccEEEecCC-cceEEeeehhcCC
Confidence            999999999999999 9999999876543

>KOG1539|consensus

Probab=99.78  E-value=6.8e-18  Score=148.55  Aligned_cols=180  Identities=15%  Similarity=0.210  Sum_probs=157.0

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEe--cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVF--AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      .|...|+|-+ ++.+|-....+.  ..|..+|+.++...-++.+++++.+|.+++||+.....+..+. -...+.++..+
T Consensus       465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~h  543 (910)
T KOG1539|consen  465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYH  543 (910)
T ss_pred             EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeee
Confidence            3566778888 999998888773  4799999999998888999999999999999999888777765 34467788888


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      .....++.+..|-.|+++|..+.+.++.+.+|.          .+++.++|||||+.|++++.        |++|++||+
T Consensus       544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~----------nritd~~FS~DgrWlisasm--------D~tIr~wDl  605 (910)
T KOG1539|consen  544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG----------NRITDMTFSPDGRWLISASM--------DSTIRTWDL  605 (910)
T ss_pred             ehhhhhhhhcCceeEEEEEchhhhhhHHhhccc----------cceeeeEeCCCCcEEEEeec--------CCcEEEEec
Confidence            888899999999999999999999999998885          35567889999999999776        999999999


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC-CeEEEEEeC
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT-GSVFVYIAF  291 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d-g~i~vwd~~  291 (297)
                      .++.++..+.......++.|||+|.+||+... | .-|++|-=.
T Consensus       606 pt~~lID~~~vd~~~~sls~SPngD~LAT~Hv-d~~gIylWsNk  648 (910)
T KOG1539|consen  606 PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV-DQNGIYLWSNK  648 (910)
T ss_pred             cCcceeeeEecCCcceeeEECCCCCEEEEEEe-cCceEEEEEch
Confidence            99999999988888999999999999999999 7 779999643

>KOG0639|consensus

Probab=99.77  E-value=3e-18  Score=143.21  Aligned_cols=164  Identities=13%  Similarity=0.230  Sum_probs=131.9

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC---eeeEEecc--ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM---KPLLHIEA--HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~  189 (297)
                      .|..-|.++.+|...+.++||+ .|.|+|||+...   .++..+.+  ....|.+..+.|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            6889999999999889999986 567999999632   24444443  34578999999999999999999999999997


Q ss_pred             CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEE
Q psy3337         190 NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAV  268 (297)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~  268 (297)
                      ...+.........        ......++.+||.+..+++..        ||.|.|||+.....++.|.+|.. +.|+.+
T Consensus       496 apTprikaeltss--------apaCyALa~spDakvcFsccs--------dGnI~vwDLhnq~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  496 APTPRIKAELTSS--------APACYALAISPDAKVCFSCCS--------DGNIAVWDLHNQTLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             CCCcchhhhcCCc--------chhhhhhhcCCccceeeeecc--------CCcEEEEEcccceeeecccCCCCCceeEEe
Confidence            5543222211110        011123778999999888665        99999999999999999999987 999999


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++||..|.+|+. |.+|+.||+++++.+
T Consensus       560 s~dGtklWTGGl-DntvRcWDlregrql  586 (705)
T KOG0639|consen  560 SKDGTKLWTGGL-DNTVRCWDLREGRQL  586 (705)
T ss_pred             cCCCceeecCCC-ccceeehhhhhhhhh
Confidence            999999999999 999999999988765

>KOG2048|consensus

Probab=99.77  E-value=2.3e-16  Score=136.18  Aligned_cols=189  Identities=13%  Similarity=0.224  Sum_probs=147.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCC-CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGS-ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      .+.+..|+.|.+ ++..+-.......++ ...|.+++|++ +..|++.+.+|.|.-||+.++++...+....+.|++++.
T Consensus        40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai  118 (691)
T KOG2048|consen   40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAI  118 (691)
T ss_pred             eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEe
Confidence            345677899999 676655544444354 55799999994 556889999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      +|.+..++.|+.||.++.++...++.........        ...++-++.|+|++..++.        |+.||.|++||
T Consensus       119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r--------q~sRvLslsw~~~~~~i~~--------Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR--------QKSRVLSLSWNPTGTKIAG--------GSIDGVIRIWD  182 (691)
T ss_pred             CCccceEEeecCCceEEEEecCCceEEEEeeccc--------ccceEEEEEecCCccEEEe--------cccCceEEEEE
Confidence            9999999999999977777776665544432221        1234556889999998988        77799999999


Q ss_pred             CCCCceEEEec-----cC--CC--eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         248 VDSGRLRLARE-----MK--ES--LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       248 ~~~~~~~~~~~-----~~--~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      ..+++.+....     ..  +.  |+++.|-.+ ..|++|.. -|+|.+||...+.+++
T Consensus       183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS-~G~V~FWd~~~gTLiq  239 (691)
T KOG2048|consen  183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDS-AGTVTFWDSIFGTLIQ  239 (691)
T ss_pred             cCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecC-CceEEEEcccCcchhh
Confidence            99987766221     11  22  888888755 57888888 9999999999887653

>KOG0307|consensus

Probab=99.77  E-value=9.1e-19  Score=158.81  Aligned_cols=192  Identities=13%  Similarity=0.185  Sum_probs=148.1

Q ss_pred             CCCCCCCceEEE-EeeC---CC---eEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEe--cccc
Q psy3337          90 NSIDSKEKNLRF-GFKT---FD---SVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHI--EAHS  159 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~---~~---~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~  159 (297)
                      ...|.+||.|.+ +...   +.   .+.+.. .|.+.|..+.|++.. ++||+|+.||.|.|||+...+.-..+  ....
T Consensus        83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~  161 (1049)
T KOG0307|consen   83 IAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP  161 (1049)
T ss_pred             eeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence            446788999999 6543   22   233444 799999999999964 69999999999999999875433333  2245


Q ss_pred             CCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCccccc
Q psy3337         160 KEIDDVDFSIS-GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNK  237 (297)
Q Consensus       160 ~~v~~~~~sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g  237 (297)
                      +.|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+...        +.+..++|+|+.. .|++++.     -
T Consensus       162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~--------~~~S~l~WhP~~aTql~~As~-----d  228 (1049)
T KOG0307|consen  162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR--------MHCSVLAWHPDHATQLLVASG-----D  228 (1049)
T ss_pred             ccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc--------cceeeeeeCCCCceeeeeecC-----C
Confidence            78999999874 557888999999999999988777777655422        3345689999864 4444443     3


Q ss_pred             CCCCeEEEEeCCC-CceEEEeccCCC-eEEEEEcCCC-CEEEEEecCCCeEEEEEeCCceec
Q psy3337         238 RGISYVQQWDVDS-GRLRLAREMKES-LSALAVRDDG-RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       238 ~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .....|.+||++. ...+..+++|.. |.++.|++.+ ++|++++. |+.|.+|+..+++.+
T Consensus       229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk-D~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK-DNRIICWNPNTGEVL  289 (1049)
T ss_pred             CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC-CCCeeEecCCCceEe
Confidence            3456899999987 567788888888 9999999965 88999999 999999999998865

>KOG2445|consensus

Probab=99.77  E-value=6.6e-17  Score=127.61  Aligned_cols=238  Identities=13%  Similarity=0.048  Sum_probs=158.8

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeec--cccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM--NGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKN   78 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   78 (297)
                      ++|++|+.-|+.+|++.+|.+++||+...+...-  ....       +...+.-.|..=...+-++.             
T Consensus        16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-------rah~~Si~rV~WAhPEfGqv-------------   75 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-------RAHDGSIWRVVWAHPEFGQV-------------   75 (361)
T ss_pred             eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-------EecCCcEEEEEecCccccce-------------
Confidence            5789999999999999999999999975432110  0011       11222223322222222222             


Q ss_pred             CCCCCCCCCCcCCCCCCCceEEEEee---C----C---CeEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeC
Q psy3337          79 KKDKIEDPPILNSIDSKEKNLRFGFK---T----F---DSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSF  146 (297)
Q Consensus        79 ~~~~~~~~~~l~~~~~~d~~i~~~~~---~----~---~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~  146 (297)
                                 ..+.+.|+++.|+-+   .    +   ....++. .....|+.+.|.|.  |-.||+++.||.++||+.
T Consensus        76 -----------vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   76 -----------VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             -----------EEEEecCCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence                       557889999999332   1    1   1223444 77888999999994  678999999999999987


Q ss_pred             CCCe------eeEEec-------cccCCeeEEEEccC---CCEEEEEeCC-----CcEEEEEcCCCc----eeeeeeccC
Q psy3337         147 PKMK------PLLHIE-------AHSKEIDDVDFSIS---GEQIVSIAKD-----GKAFVWNSKNGS----LSKELKWNT  201 (297)
Q Consensus       147 ~~~~------~~~~~~-------~~~~~v~~~~~sp~---~~~l~s~~~d-----~~v~lwd~~~~~----~~~~~~~~~  201 (297)
                      ...-      ....++       .+..+..|+.|+|.   ..+|+.|+.+     +.++||....+.    .+.++..|.
T Consensus       144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~  223 (361)
T KOG2445|consen  144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT  223 (361)
T ss_pred             CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence            5432      222333       45667889999983   4578887765     478888765332    233343332


Q ss_pred             CCCceEEEEeeeeeeeeeCCCC----eEEEEeccCcccccCCCCeEEEEeCCCC--------------------ceEEEe
Q psy3337         202 PDNIKYLFKRCRYGLVEDSPKR----SRLFTLANPLAQNKRGISYVQQWDVDSG--------------------RLRLAR  257 (297)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~~~~~~g~~d~~i~~wd~~~~--------------------~~~~~~  257 (297)
                                ..+..++|.|+-    ..|++        ++.|| |+||.+...                    +.+..+
T Consensus       224 ----------dpI~di~wAPn~Gr~y~~lAv--------A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~  284 (361)
T KOG2445|consen  224 ----------DPIRDISWAPNIGRSYHLLAV--------ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL  284 (361)
T ss_pred             ----------CcceeeeeccccCCceeeEEE--------eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence                      234457788862    34444        55688 999998731                    234456


Q ss_pred             ccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         258 EMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       258 ~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      ..|.. |..+.|+-.|..|++.+. ||.|++|..
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGd-DG~VRLWka  317 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGD-DGCVRLWKA  317 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCC-Cceeeehhh
Confidence            67775 999999999999999999 999999974

>KOG0321|consensus

Probab=99.76  E-value=4.7e-17  Score=139.58  Aligned_cols=193  Identities=16%  Similarity=0.141  Sum_probs=135.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEE--EecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCe---------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQT--VFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMK---------------  150 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~--~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~---------------  150 (297)
                      ..+.+.|.++++ |+.+++++..  +. ||...|.+++|.|.. ..|++|+.||.|.|||++-..               
T Consensus       115 lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~  193 (720)
T KOG0321|consen  115 LVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH  193 (720)
T ss_pred             EEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence            457888999999 8988888766  55 999999999999955 789999999999999974211               


Q ss_pred             ------------eeEEeccccCCeeE---EEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeccCCCCceEEE---Ee
Q psy3337         151 ------------PLLHIEAHSKEIDD---VDFSISGEQIVSIAK-DGKAFVWNSKNGSLSKELKWNTPDNIKYLF---KR  211 (297)
Q Consensus       151 ------------~~~~~~~~~~~v~~---~~~sp~~~~l~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~---~~  211 (297)
                                  .+....+|...|.+   +-+..|...||+++. |+.|++||++.............+  .+..   ..
T Consensus       194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~--~~~t~skrs  271 (720)
T KOG0321|consen  194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD--KYPTHSKRS  271 (720)
T ss_pred             cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc--CccCcccce
Confidence                        11122344444555   556678889999887 999999999865443322211100  1111   12


Q ss_pred             eeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC--ceEEEeccCCC---eEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         212 CRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG--RLRLAREMKES---LSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       212 ~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~---v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                      ..+..+.....|.+|++..        .|+.|+.|++.+.  .++..+.++..   -..-..+||+.+|++|+. |...+
T Consensus       272 ~G~~nL~lDssGt~L~AsC--------tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-d~~ay  342 (720)
T KOG0321|consen  272 VGQVNLILDSSGTYLFASC--------TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-DEQAY  342 (720)
T ss_pred             eeeEEEEecCCCCeEEEEe--------cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC-Cccee
Confidence            2333455666778888744        4999999999873  34555555432   223346899999999999 99999


Q ss_pred             EEEeCCce
Q psy3337         287 VYIAFSLQ  294 (297)
Q Consensus       287 vwd~~~~~  294 (297)
                      +|.+.+.+
T Consensus       343 iw~vs~~e  350 (720)
T KOG0321|consen  343 IWVVSSPE  350 (720)
T ss_pred             eeeecCcc
Confidence            99987654

>KOG1063|consensus

Probab=99.75  E-value=3.1e-17  Score=141.78  Aligned_cols=163  Identities=20%  Similarity=0.295  Sum_probs=128.1

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCC-----cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDG-----HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKA  183 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v  183 (297)
                      ++.+. ||.-.|++++.+|+++++|++....     .|++|+..+...+..+.+|.-.|+.++||||+++|++.++|.++
T Consensus       518 v~KLY-GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~  596 (764)
T KOG1063|consen  518 VHKLY-GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV  596 (764)
T ss_pred             hHHhc-cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence            45566 9999999999999999999987643     58999999888888999999999999999999999999999999


Q ss_pred             EEEEcCCCce----eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC--ceEEE-
Q psy3337         184 FVWNSKNGSL----SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG--RLRLA-  256 (297)
Q Consensus       184 ~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~--~~~~~-  256 (297)
                      .+|.......    ....+.|.    .++      +...|+|++.+++|++        .|.+|.+|.....  +.+.. 
T Consensus       597 sl~~~~~~~~~e~~fa~~k~Ht----RII------WdcsW~pde~~FaTaS--------RDK~VkVW~~~~~~d~~i~~~  658 (764)
T KOG1063|consen  597 SLYEVQEDIKDEFRFACLKAHT----RII------WDCSWSPDEKYFATAS--------RDKKVKVWEEPDLRDKYISRF  658 (764)
T ss_pred             Eeeeeecccchhhhhccccccc----eEE------EEcccCcccceeEEec--------CCceEEEEeccCchhhhhhhh
Confidence            9998754321    11133332    333      3456899999999955        5999999999876  44333 


Q ss_pred             --eccCCCeEEEEEcC-----CCCEEEEEecCCCeEEEEEeC
Q psy3337         257 --REMKESLSALAVRD-----DGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       257 --~~~~~~v~~~~~s~-----dg~~l~~~~~~dg~i~vwd~~  291 (297)
                        +.....|+.++|.|     .+..+++|-+ .|.|.+|...
T Consensus       659 a~~~~~~aVTAv~~~~~~~~e~~~~vavGle-~GeI~l~~~~  699 (764)
T KOG1063|consen  659 ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE-KGEIVLWRRK  699 (764)
T ss_pred             chhccCCceeeEEeeccccccccceEEEEec-ccEEEEEecc
Confidence              33344599999877     2336788888 9999999865

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=5.2e-15  Score=128.65  Aligned_cols=242  Identities=20%  Similarity=0.319  Sum_probs=173.5

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      +..+...+..+++++.|+.+.+|+......... .....       ....-.+ ...                . .+ . 
T Consensus        70 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~-~~~----------------~-~~-~-  121 (466)
T COG2319          70 SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK-SLEGL-------HDSSVSK-LAL----------------S-SP-D-  121 (466)
T ss_pred             EEEECCCCcEEEEecCCCcEEEEEcCCCceeEE-EEecc-------CCCceee-EEE----------------E-CC-C-
Confidence            344677888889999999999999877641100 00000       0000000 000                0 00 0 


Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeC-CCeEEEEecCCCCcEEEEEEecCCCEEEEEcC-CCcEEEEeCCCCeeeEEecccc
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKT-FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT-DGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                        ...++...+..|+.+.+ +... ......+. .|...|..++|+|+++.+++++. |+.+++|++..+..+..+..|.
T Consensus       122 --~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (466)
T COG2319         122 --GNSILLASSSLDGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT  198 (466)
T ss_pred             --cceEEeccCCCCccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC
Confidence              00122334555889999 7766 56666776 99999999999999998998886 9999999999888888999999


Q ss_pred             CCeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceee-eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         160 KEIDDVDFSISGE-QIVSIAKDGKAFVWNSKNGSLSK-ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       160 ~~v~~~~~sp~~~-~l~s~~~d~~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      ..|.+++|+|++. .+++++.|+.+++||...+..+. .+..|...    ..       ..|+|++..+++        +
T Consensus       199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~--------~  259 (466)
T COG2319         199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS----VV-------SSFSPDGSLLAS--------G  259 (466)
T ss_pred             CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc----ee-------EeECCCCCEEEE--------e
Confidence            9999999999998 55555899999999988777776 46555421    01       157899877775        4


Q ss_pred             CCCCeEEEEeCCCCce-EEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         238 RGISYVQQWDVDSGRL-RLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~-~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +.++.+++|+...... +..+..|.. +.++.|+|++..+++++. |+.+.+||..+...
T Consensus       260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~  318 (466)
T COG2319         260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS-DGTVRLWDLETGKL  318 (466)
T ss_pred             cCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC-CCcEEEEEcCCCce
Confidence            5599999999997554 444445544 999999999999998888 88899999877653

>KOG1445|consensus

Probab=99.74  E-value=3e-17  Score=140.91  Aligned_cols=168  Identities=15%  Similarity=0.183  Sum_probs=123.3

Q ss_pred             EEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy3337         110 QTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS  188 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~  188 (297)
                      ..+. .|...|+++.|+|- .+.|++++.|-+|++||+.+++....+.+|++.|.+++|||+|+.+++.+.||+|++|..
T Consensus       671 ~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  671 KILT-IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             eeee-cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            4455 89999999999994 578999999999999999999988999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC--CceEEEec--cCCCeE
Q psy3337         189 KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS--GRLRLARE--MKESLS  264 (297)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~--~~~~~~~~--~~~~v~  264 (297)
                      +++.. ....+..|.+..       -..+.|.-+|+++++.+.    .-+....|.+||..+  +..+.+..  ....+.
T Consensus       750 rs~e~-pv~Eg~gpvgtR-------gARi~wacdgr~viv~Gf----dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L  817 (1012)
T KOG1445|consen  750 RSREQ-PVYEGKGPVGTR-------GARILWACDGRIVIVVGF----DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL  817 (1012)
T ss_pred             CCCCC-ccccCCCCccCc-------ceeEEEEecCcEEEEecc----cccchhhhhhhhhhhccCCcceeeeecccCccc
Confidence            87643 122233333211       112446668888888766    245667899998776  33443322  222233


Q ss_pred             EEEEcCCCCE-EEEEecCCCeEEEEEeC
Q psy3337         265 ALAVRDDGRF-VAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       265 ~~~~s~dg~~-l~~~~~~dg~i~vwd~~  291 (297)
                      -..+.+|... +++|-. |..|.+|++-
T Consensus       818 vP~YD~Ds~~lfltGKG-D~~v~~yEv~  844 (1012)
T KOG1445|consen  818 VPHYDYDSNVLFLTGKG-DRFVNMYEVI  844 (1012)
T ss_pred             cccccCCCceEEEecCC-CceEEEEEec
Confidence            3445566554 556666 9999999874

>KOG1036|consensus

Probab=99.73  E-value=6.6e-16  Score=121.99  Aligned_cols=222  Identities=15%  Similarity=0.174  Sum_probs=157.4

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeec---cccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQM---NGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      |+ |.+ ...++++|.|+.+++|+++......   |.+....-            -..                      
T Consensus        60 c~-F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci------------~~~----------------------  103 (323)
T KOG1036|consen   60 CA-FAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCI------------EYS----------------------  103 (323)
T ss_pred             ee-ccC-CceEEEeccCceEEEEEecCCcceeeccCCCceEEE------------Eee----------------------
Confidence            44 555 5778999999999999998765321   11110000            000                      


Q ss_pred             CCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec--
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE--  156 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--  156 (297)
                        +...   ...+|++|++|++ |........++  .....|.|+..+  |+.|+.|+.|..|.+||+++.....+..  
T Consensus       104 --~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~--d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS  174 (323)
T KOG1036|consen  104 --YEVG---CVISGSWDKTIKFWDPRNKVVVGTF--DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRES  174 (323)
T ss_pred             --ccCC---eEEEcccCccEEEEecccccccccc--ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccc
Confidence              0000   0458999999999 87764444444  344478888775  6789999999999999998765433222  


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC----ceeeeeeccCCC--CceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG----SLSKELKWNTPD--NIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                      .-.-.+.++++.|++.-++.++-||.|.+=.+...    .....|+.|...  +....   -.++.++|+|-...+++  
T Consensus       175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~---yPVNai~Fhp~~~tfaT--  249 (323)
T KOG1036|consen  175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII---YPVNAIAFHPIHGTFAT--  249 (323)
T ss_pred             cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE---EEeceeEeccccceEEe--
Confidence            23456899999998888999999999998766554    334456666421  11222   24668999999888998  


Q ss_pred             cCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEec
Q psy3337         231 NPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~  280 (297)
                            |+.||.|.+||+.+.+.+..+..-+. |.+++|+.||..||+++.
T Consensus       250 ------gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  250 ------GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ------cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence                  55599999999999888877777655 999999999999999874

>KOG4328|consensus

Probab=99.73  E-value=1.3e-16  Score=131.95  Aligned_cols=188  Identities=15%  Similarity=0.114  Sum_probs=137.9

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEec-CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-eEEeccccCCeeEEEEc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFA-GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-LLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s  168 (297)
                      +.+.||+|++ |.+++..-..+.. .....+..+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            7889999999 9887754333331 2445567888888887788877777999999987654 66777888899999999


Q ss_pred             c-CCCEEEEEeCCCcEEEEEcCCCceeee-eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         169 I-SGEQIVSIAKDGKAFVWNSKNGSLSKE-LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       169 p-~~~~l~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      | ...+|++++.|++++|||++.-..... +.       ....+...+.+..|||.+-.|++...        |..|+||
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-------st~~HrrsV~sAyFSPs~gtl~TT~~--------D~~IRv~  396 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFL-------STLPHRRSVNSAYFSPSGGTLLTTCQ--------DNEIRVF  396 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcce-------ecccccceeeeeEEcCCCCceEeecc--------CCceEEe
Confidence            9 456789999999999999985322221 10       01111223445779999888998666        9999999


Q ss_pred             eCC----CCceEEEeccC---CC---eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         247 DVD----SGRLRLAREMK---ES---LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       247 d~~----~~~~~~~~~~~---~~---v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |..    .-.+..++.+.   ..   .....|.|+..+|++|.. -..|-|||-..++.
T Consensus       397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~-~r~IDv~~~~~~q~  454 (498)
T KOG4328|consen  397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY-PRPIDVFDGNGGQM  454 (498)
T ss_pred             ecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc-CcceeEEcCCCCEE
Confidence            984    33444444432   11   567789999999999999 89999999888774

>KOG4378|consensus

Probab=99.73  E-value=1e-16  Score=133.91  Aligned_cols=163  Identities=21%  Similarity=0.283  Sum_probs=131.5

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEe-ccccCCeeEEEE
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVDF  167 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~  167 (297)
                      .+++..|.|.| ...++....++..+....|.-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...++|
T Consensus       137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF  216 (673)
T ss_pred             EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence            46677788888 88888877777544456778999999775 5668999999999999887776554 579999999999


Q ss_pred             cc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         168 SI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       168 sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      +| +..+|++.+.|..|.+||++.......+....           .+..++|+++|.+|+.        |+..|.|..|
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-----------Plstvaf~~~G~~L~a--------G~s~G~~i~Y  277 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-----------PLSTVAFSECGTYLCA--------GNSKGELIAY  277 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccccceeeecC-----------CcceeeecCCceEEEe--------ecCCceEEEE
Confidence            99 45678889999999999998766655554332           3456899999999988        6669999999


Q ss_pred             eCCC-CceEEEeccCCC-eEEEEEcCCC
Q psy3337         247 DVDS-GRLRLAREMKES-LSALAVRDDG  272 (297)
Q Consensus       247 d~~~-~~~~~~~~~~~~-v~~~~~s~dg  272 (297)
                      |++. ..++..+..|.. |++++|-|..
T Consensus       278 D~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  278 DMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecccCCCCceEeeecccceeEEEeeecc
Confidence            9998 668888888887 9999997754

>KOG2055|consensus

Probab=99.73  E-value=3.1e-16  Score=129.88  Aligned_cols=181  Identities=17%  Similarity=0.188  Sum_probs=147.7

Q ss_pred             CCCCCCceEEE---EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCee--eEEecccc-CCee
Q psy3337          91 SIDSKEKNLRF---GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKP--LLHIEAHS-KEID  163 (297)
Q Consensus        91 ~~~~~d~~i~~---~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~-~~v~  163 (297)
                      ..++.|++++|   |-.+...++.+. -...+|.+..|.|+|. .+++++.....+.||+.+.+.  +..+.++. ..+.
T Consensus       229 lvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e  307 (514)
T KOG2055|consen  229 LVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME  307 (514)
T ss_pred             EEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh
Confidence            35778889888   334444556655 4567899999999997 899999999999999987763  33444444 3577


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         164 DVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      ....+|++++|+..+..|.|.|....+++.+.+++...           .+..++|+.+++.|+.++.        +|.|
T Consensus       308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG-----------~v~~~~fsSdsk~l~~~~~--------~GeV  368 (514)
T KOG2055|consen  308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG-----------VVSDFTFSSDSKELLASGG--------TGEV  368 (514)
T ss_pred             eeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc-----------EEeeEEEecCCcEEEEEcC--------CceE
Confidence            88899999999999999999999999999888887543           2345778999999998665        8999


Q ss_pred             EEEeCCCCceEEEeccCCC--eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         244 QQWDVDSGRLRLAREMKES--LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++||++...+++.+...+.  -++++.|++|.|||+|+. .|.|.|||..+
T Consensus       369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~-~GiVNIYd~~s  418 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD-SGIVNIYDGNS  418 (514)
T ss_pred             EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC-cceEEEeccch
Confidence            9999999999999887666  577888899999999999 99999999654

>KOG0649|consensus

Probab=99.72  E-value=2.9e-15  Score=114.89  Aligned_cols=159  Identities=16%  Similarity=0.130  Sum_probs=117.9

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL  197 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~  197 (297)
                      ..|+++.+.|..+-++.++.|+.++-||+++|+..+++++|++.|.++.--.....+++|+.||++++||.++++.+..+
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence            46889999998877888889999999999999999999999999999998555567999999999999999999988877


Q ss_pred             eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEE
Q psy3337         198 KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAV  277 (297)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  277 (297)
                      ...........-....++.++.  +...+++..         ...+.+|++++.++...+.-...+..+.|..  ..+++
T Consensus       195 e~yk~~~~lRp~~g~wigala~--~edWlvCGg---------Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~  261 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG---------GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLI  261 (325)
T ss_pred             ccccChhhcCcccCceeEEEec--cCceEEecC---------CCceeEEeccCCCceEEEecccceeEeeeec--ceEEE
Confidence            6433111000000111222333  344455532         4689999999999888888777788888854  46667


Q ss_pred             EecCCCeEEEEEe
Q psy3337         278 GTMFTGSVFVYIA  290 (297)
Q Consensus       278 ~~~~dg~i~vwd~  290 (297)
                      ++. .+.|.-|.+
T Consensus       262 ~G~-g~~v~~~~l  273 (325)
T KOG0649|consen  262 GGE-GNHVQSYTL  273 (325)
T ss_pred             ecc-ccceeeeee
Confidence            776 666666654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=2.8e-15  Score=117.01  Aligned_cols=154  Identities=18%  Similarity=0.220  Sum_probs=110.1

Q ss_pred             EEEEecCCCEEEEEcC----------CCcEEEEeCCC-CeeeEEecc-ccCCeeEEEEccCCCEEEEE--eCCCcEEEEE
Q psy3337         122 VVRLSRNGDLMVTGGT----------DGHLRLWSFPK-MKPLLHIEA-HSKEIDDVDFSISGEQIVSI--AKDGKAFVWN  187 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~----------d~~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~--~~d~~v~lwd  187 (297)
                      .+.|+|+|++|+.-..          -+...+|.++. ...+..+.- ..++|.+++|+|+++.|++.  ..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            6778888877664322          12345555432 233444432 34579999999999987654  4567999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEE
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALA  267 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~  267 (297)
                      ++ ++.+..+...            ..+.+.|+|+|++|++++.     |...|.|.+||+++.+.+...... .+..++
T Consensus        90 ~~-~~~i~~~~~~------------~~n~i~wsP~G~~l~~~g~-----~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~  150 (194)
T PF08662_consen   90 VK-GKKIFSFGTQ------------PRNTISWSPDGRFLVLAGF-----GNLNGDLEFWDVRKKKKISTFEHS-DATDVE  150 (194)
T ss_pred             Cc-ccEeEeecCC------------CceEEEECCCCCEEEEEEc-----cCCCcEEEEEECCCCEEeeccccC-cEEEEE
Confidence            96 5565555321            2335889999999999876     666789999999988888776543 488999


Q ss_pred             EcCCCCEEEEEecC-----CCeEEEEEeCCcee
Q psy3337         268 VRDDGRFVAVGTMF-----TGSVFVYIAFSLQM  295 (297)
Q Consensus       268 ~s~dg~~l~~~~~~-----dg~i~vwd~~~~~~  295 (297)
                      |+|||++|++++..     |..++||+.. |+.
T Consensus       151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~  182 (194)
T PF08662_consen  151 WSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRL  182 (194)
T ss_pred             EcCCCCEEEEEEeccceeccccEEEEEec-CeE
Confidence            99999999988742     7889999984 444

>KOG1007|consensus

Probab=99.71  E-value=1e-15  Score=119.98  Aligned_cols=158  Identities=21%  Similarity=0.265  Sum_probs=114.4

Q ss_pred             CCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCeeeEEe-ccccCCeeEEEEccCCC-EEEEEeCCCcEEEEEcCC-
Q psy3337         116 SESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVDFSISGE-QIVSIAKDGKAFVWNSKN-  190 (297)
Q Consensus       116 h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~-~l~s~~~d~~v~lwd~~~-  190 (297)
                      |....++-+|+|  +|+.+++. .|+++..||+++.+....+ .+|...|..+.|+|+.+ +|++++.||.|++||.+. 
T Consensus       169 ~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  169 MRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             ccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            444456788998  78888876 6889999999988776666 46888999999999765 578899999999999984 


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-------------------
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-------------------  251 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-------------------  251 (297)
                      ..+++++..|.    .+.      +.+.|+|.-..|+.       +|+.|..|.+|...+-                   
T Consensus       248 k~pv~el~~Hs----HWv------W~VRfn~~hdqLiL-------s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d  310 (370)
T KOG1007|consen  248 KFPVQELPGHS----HWV------WAVRFNPEHDQLIL-------SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED  310 (370)
T ss_pred             CccccccCCCc----eEE------EEEEecCccceEEE-------ecCCCceeEEEeccccccccccccccccccCcchh
Confidence            45677777664    333      34777886544433       2556888888864320                   


Q ss_pred             ----------ceEEEeccCCC-eEEEEEcCCCCE-EEEEecCCCeEEEEEeCC
Q psy3337         252 ----------RLRLAREMKES-LSALAVRDDGRF-VAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       252 ----------~~~~~~~~~~~-v~~~~~s~dg~~-l~~~~~~dg~i~vwd~~~  292 (297)
                                ..+.++..|+. |++++||.-..+ +++-+. ||++.|=.+..
T Consensus       311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY-DGRviIs~V~r  362 (370)
T KOG1007|consen  311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY-DGRVIISSVPR  362 (370)
T ss_pred             hHHhcccccccccccccccccceEEEeeccCCCeeEEEecc-CceEEeecCCh
Confidence                      12335556666 999999986555 556666 99998876653

>KOG2106|consensus

Probab=99.71  E-value=3.7e-15  Score=124.92  Aligned_cols=172  Identities=16%  Similarity=0.172  Sum_probs=132.7

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      |...+.|.. .++++..+..+  +|......++.+|+.+++++++.|+.+++|+  ..+++.+.. -.+++.++.|+|.|
T Consensus       345 GTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg  419 (626)
T KOG2106|consen  345 GTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG  419 (626)
T ss_pred             eeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc
Confidence            444445555 66665544333  9999999999999999999999999999999  444444433 45689999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-
Q psy3337         172 EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-  250 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-  250 (297)
                       .++.|...|...+.|..+...+..-...           .++..+.|+|+|.+|+.        |+.|+.|++|-+.. 
T Consensus       420 -~va~Gt~~G~w~V~d~e~~~lv~~~~d~-----------~~ls~v~ysp~G~~lAv--------gs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  420 -VVAVGTATGRWFVLDTETQDLVTIHTDN-----------EQLSVVRYSPDGAFLAV--------GSHDNHIYIYRVSAN  479 (626)
T ss_pred             -eEEEeeccceEEEEecccceeEEEEecC-----------CceEEEEEcCCCCEEEE--------ecCCCeEEEEEECCC
Confidence             9999999999999999886555443322           23445889999999998        66699999999876 


Q ss_pred             CceEEEecc-C-CCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         251 GRLRLAREM-K-ESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       251 ~~~~~~~~~-~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      |........ + ..|+.+.||+|+++|.+-+. |-.|..|..
T Consensus       480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~-d~eiLyW~~  520 (626)
T KOG2106|consen  480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG-DYEILYWKP  520 (626)
T ss_pred             CcEEEEeeeecCceeEEeeecCCCceEEeccC-ceEEEEEcc
Confidence            444333322 2 34999999999999999999 999999943

>KOG4378|consensus

Probab=99.71  E-value=3.4e-16  Score=130.86  Aligned_cols=184  Identities=11%  Similarity=0.133  Sum_probs=146.9

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc-cCCeeEEEEc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH-SKEIDDVDFS  168 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s  168 (297)
                      .+++..+.|+| |+....+.+.+. +|...|+++.++....+||+++..|.|.|..+.++.....|... ...|.-+.|+
T Consensus        95 ~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys  173 (673)
T KOG4378|consen   95 ISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYS  173 (673)
T ss_pred             eccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecc
Confidence            47888999999 777544445555 99999999999999999999999999999999988777777644 4457799999


Q ss_pred             cCCCE-EEEEeCCCcEEEEEcCCCceeeeee-ccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCCCeEEE
Q psy3337         169 ISGEQ-IVSIAKDGKAFVWNSKNGSLSKELK-WNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       169 p~~~~-l~s~~~d~~v~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      |..++ |.+++.+|.|.+||+....++..+. .|.          .....++|+|... .|++++.        |..|.+
T Consensus       174 ~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs----------AP~~gicfspsne~l~vsVG~--------Dkki~~  235 (673)
T KOG4378|consen  174 PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS----------APCRGICFSPSNEALLVSVGY--------DKKINI  235 (673)
T ss_pred             cccceeeEeeccCCeEEEEeccCCCcccchhhhcc----------CCcCcceecCCccceEEEecc--------cceEEE
Confidence            97665 5578899999999997665554432 232          1122377888765 4555554        999999


Q ss_pred             EeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         246 WDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ||.++.+....+....+..+++|+++|.+|+.|+. .|.|..||++..+
T Consensus       236 yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s-~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  236 YDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS-KGELIAYDMRSTK  283 (673)
T ss_pred             eecccccccceeeecCCcceeeecCCceEEEeecC-CceEEEEecccCC
Confidence            99998888877777777999999999999999999 9999999998654

>KOG2106|consensus

Probab=99.71  E-value=7e-15  Score=123.31  Aligned_cols=176  Identities=19%  Similarity=0.262  Sum_probs=138.4

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC----------------------
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK----------------------  148 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----------------------  148 (297)
                      .+..+|.|.| +..+.+..+... .|.+.|.+++.-.+|. |++|+.|..|..||-.-                      
T Consensus       262 TgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~  339 (626)
T KOG2106|consen  262 TGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK  339 (626)
T ss_pred             eecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCC
Confidence            6777889999 666666777777 9999999999999996 55599999999999210                      


Q ss_pred             Ce------------------eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEE
Q psy3337         149 MK------------------PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFK  210 (297)
Q Consensus       149 ~~------------------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  210 (297)
                      +.                  .....++|.+..+.++.+|+..+|++++.|+.++||+  ..+++.+.....|.       
T Consensus       340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~-------  410 (626)
T KOG2106|consen  340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPA-------  410 (626)
T ss_pred             CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCce-------
Confidence            00                  0112346888999999999999999999999999999  44444444333221       


Q ss_pred             eeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         211 RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       211 ~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                          .++.|+|.| .++.        |...|...+.|..+...+..-...+++++++|+|+|.+||.|+. |+.|+||-+
T Consensus       411 ----~~~~fhpsg-~va~--------Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-d~~iyiy~V  476 (626)
T KOG2106|consen  411 ----ECADFHPSG-VVAV--------GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-DNHIYIYRV  476 (626)
T ss_pred             ----eEeeccCcc-eEEE--------eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC-CCeEEEEEE
Confidence                236789999 6666        66699999999999777766666666999999999999999999 999999987


Q ss_pred             CC
Q psy3337         291 FS  292 (297)
Q Consensus       291 ~~  292 (297)
                      ..
T Consensus       477 s~  478 (626)
T KOG2106|consen  477 SA  478 (626)
T ss_pred             CC
Confidence            54

>KOG0644|consensus

Probab=99.71  E-value=1.5e-17  Score=146.59  Aligned_cols=214  Identities=13%  Similarity=0.245  Sum_probs=153.2

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      =|++|+..|++++++..|..++||++...                                                   
T Consensus       194 yca~fDrtg~~Iitgsdd~lvKiwS~et~---------------------------------------------------  222 (1113)
T KOG0644|consen  194 YCAIFDRTGRYIITGSDDRLVKIWSMETA---------------------------------------------------  222 (1113)
T ss_pred             eeeeeccccceEeecCccceeeeeeccch---------------------------------------------------
Confidence            38889999999999999999999985432                                                   


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                                               .++.... ||.+.|+.++.+.+.-++++++.|..|++|.+..+.++..+.+|++.
T Consensus       223 -------------------------~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga  276 (1113)
T KOG0644|consen  223 -------------------------RCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA  276 (1113)
T ss_pred             -------------------------hhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence                                     3345566 99999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceE----EEE----------------eeeeeeeeeCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKY----LFK----------------RCRYGLVEDSP  221 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~----~~~----------------~~~~~~~~~s~  221 (297)
                      |++++|+|-.    +.+.||++++||.+-.-.+..-....+.....    .+.                .-.+..++|..
T Consensus       277 vtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~  352 (1113)
T KOG0644|consen  277 VTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS  352 (1113)
T ss_pred             eeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc
Confidence            9999999954    77899999999987111111000000000000    000                00011122332


Q ss_pred             CCeEEEEecc---CcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         222 KRSRLFTLAN---PLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRD-DGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       222 ~~~~l~~~~~---~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..-.+++...   ...++.-.+..+.+|++.+|+++..+.+|.. +..+.++| |.+...+++. ||...|||+..|-++
T Consensus       353 ~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~-dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  353 NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY-DGSTIIWDIWEGIPI  431 (1113)
T ss_pred             cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC-CCceEeeecccCCcc
Confidence            2222222221   1333445578899999999999999999877 99999999 5555567777 999999999888765


Q ss_pred             C
Q psy3337         297 R  297 (297)
Q Consensus       297 ~  297 (297)
                      |
T Consensus       432 k  432 (1113)
T KOG0644|consen  432 K  432 (1113)
T ss_pred             e
Confidence            4

>KOG4328|consensus

Probab=99.69  E-value=1e-15  Score=126.77  Aligned_cols=168  Identities=14%  Similarity=0.191  Sum_probs=120.5

Q ss_pred             CCCCcEEEEEEecCC--CEEEEEcCCCcEEEEeCCCC----eeeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEE
Q psy3337         115 GSESLQRVVRLSRNG--DLMVTGGTDGHLRLWSFPKM----KPLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd  187 (297)
                      -+..+|++++|+|..  +++|+|..-|.|-+||+.+.    .-+..+..|..+|.++.|+| +-..+++.+.||+|++-|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            578899999999964  58899999999999999532    24567788999999999999 556899999999999999


Q ss_pred             cCCCce--eeee----------eccCCCC-----------------------ceEEEEeeeeeeeeeCCCCeEEEEeccC
Q psy3337         188 SKNGSL--SKEL----------KWNTPDN-----------------------IKYLFKRCRYGLVEDSPKRSRLFTLANP  232 (297)
Q Consensus       188 ~~~~~~--~~~~----------~~~~~~~-----------------------~~~~~~~~~~~~~~~s~~~~~l~~~~~~  232 (297)
                      +.....  +..+          +......                       ..+..+.-++..++++|-..+++.    
T Consensus       264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la----  339 (498)
T KOG4328|consen  264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA----  339 (498)
T ss_pred             ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee----
Confidence            875421  1111          0000000                       001111123445677776554333    


Q ss_pred             cccccCCCCeEEEEeCCCC--ce---EEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         233 LAQNKRGISYVQQWDVDSG--RL---RLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~--~~---~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                         +++.|++.+|||++.-  +.   +..+.+...|.++.|||++..|++.+. |..|+|||.
T Consensus       340 ---T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~-D~~IRv~ds  398 (498)
T KOG4328|consen  340 ---TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ-DNEIRVFDS  398 (498)
T ss_pred             ---ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc-CCceEEeec
Confidence               3667999999999872  22   444444444999999999888999999 999999998

>KOG2110|consensus

Probab=99.68  E-value=2.8e-14  Score=115.48  Aligned_cols=172  Identities=16%  Similarity=0.222  Sum_probs=135.4

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec---cccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE---AHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~  172 (297)
                      +.+++ +...+..+..+.  ....|.+|.++.+  .|+++-.+. |+|||+++.+.+.++.   .+...+.++++++.+.
T Consensus        68 r~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~  142 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIF--FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC  142 (391)
T ss_pred             ceEEEEEcccCceEEEEe--cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCc
Confidence            45677 777766666663  4556888888754  677665554 9999999999887764   3555677777777777


Q ss_pred             EEEEEe--CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC-eEEEEeCC
Q psy3337         173 QIVSIA--KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-YVQQWDVD  249 (297)
Q Consensus       173 ~l~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~-~i~~wd~~  249 (297)
                      +++.-+  ..|.|.|||..+-+.+..+..|..          .+..++|+++|.+|++++.        .| .|||+.+.
T Consensus       143 ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----------~lAalafs~~G~llATASe--------KGTVIRVf~v~  204 (391)
T KOG2110|consen  143 YLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----------PLAALAFSPDGTLLATASE--------KGTVIRVFSVP  204 (391)
T ss_pred             eEEecCCCCCceEEEEEcccceeeeEEEecCC----------ceeEEEECCCCCEEEEecc--------CceEEEEEEcC
Confidence            888532  458999999999888888887752          2335889999999999654        55 58999999


Q ss_pred             CCceEEEeccCCC---eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         250 SGRLRLAREMKES---LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       250 ~~~~~~~~~~~~~---v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +|+.+..|+....   |.+++|+||+.+|++.+. .++|++|.+..
T Consensus       205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~-TeTVHiFKL~~  249 (391)
T KOG2110|consen  205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN-TETVHIFKLEK  249 (391)
T ss_pred             CccEeeeeeCCceeeEEEEEEECCCCCeEEEecC-CCeEEEEEecc
Confidence            9999999876432   999999999999999999 99999999865

>KOG0321|consensus

Probab=99.68  E-value=1.2e-15  Score=131.04  Aligned_cols=194  Identities=13%  Similarity=0.190  Sum_probs=133.2

Q ss_pred             CCCCCceEEE-EeeCCCe------EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE--eccccCCe
Q psy3337          92 IDSKEKNLRF-GFKTFDS------VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH--IEAHSKEI  162 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v  162 (297)
                      .+.+||-|.+ +...-..      +... ..|...|..+.|-|....|++++.|.++++||+.+.+++..  +.+|...|
T Consensus        69 vadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~Sv  147 (720)
T KOG0321|consen   69 VADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSV  147 (720)
T ss_pred             EecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccccc
Confidence            4566777777 6443221      1223 37999999999999667899999999999999998887765  88999999


Q ss_pred             eEEEEccC-CCEEEEEeCCCcEEEEEcCCCce--ee-----eeeccC----CC------CceEEEEeeeee---eeeeCC
Q psy3337         163 DDVDFSIS-GEQIVSIAKDGKAFVWNSKNGSL--SK-----ELKWNT----PD------NIKYLFKRCRYG---LVEDSP  221 (297)
Q Consensus       163 ~~~~~sp~-~~~l~s~~~d~~v~lwd~~~~~~--~~-----~~~~~~----~~------~~~~~~~~~~~~---~~~~s~  221 (297)
                      .+++|.|. ...|++|+.||.|.|||++-...  +.     ....|.    |.      ..........+.   .+.+..
T Consensus       148 kS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk  227 (720)
T KOG0321|consen  148 KSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK  227 (720)
T ss_pred             chhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe
Confidence            99999994 56889999999999999973220  00     000010    00      000011111111   244566


Q ss_pred             CCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE--------eccC---CC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         222 KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA--------REMK---ES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       222 ~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~--------~~~~---~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      |...|++++       ..|+.|+|||++.......        +..+   .. +.++.....|.+|++.+. |+.|++|+
T Consensus       228 De~tlaSag-------a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~yn  299 (720)
T KOG0321|consen  228 DESTLASAG-------AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYN  299 (720)
T ss_pred             ccceeeecc-------CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEe
Confidence            777777753       3599999999997432211        2222   11 778888888999998888 99999999


Q ss_pred             eCCce
Q psy3337         290 AFSLQ  294 (297)
Q Consensus       290 ~~~~~  294 (297)
                      +.+..
T Consensus       300 m~s~s  304 (720)
T KOG0321|consen  300 MRSLS  304 (720)
T ss_pred             ccccC
Confidence            97653

>KOG2445|consensus

Probab=99.67  E-value=9.1e-15  Score=115.66  Aligned_cols=80  Identities=19%  Similarity=0.295  Sum_probs=69.7

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC----CeeeEEeccccCCeeEEEEcc--CCCEEEEEeCCCc
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK----MKPLLHIEAHSKEIDDVDFSI--SGEQIVSIAKDGK  182 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~d~~  182 (297)
                      .+.+..+|.+-|+++.|.+-|+.+|+|+.|++|+|||.++    ..+...++.|.+.|..+.|-+  -|+.+|+++.|++
T Consensus         5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            3445558999999999999999999999999999999753    346678899999999999955  5899999999999


Q ss_pred             EEEEEc
Q psy3337         183 AFVWNS  188 (297)
Q Consensus       183 v~lwd~  188 (297)
                      +.||.-
T Consensus        85 v~iWEE   90 (361)
T KOG2445|consen   85 VSIWEE   90 (361)
T ss_pred             eeeeee
Confidence            999974

>KOG0307|consensus

Probab=99.67  E-value=5.7e-16  Score=140.91  Aligned_cols=188  Identities=12%  Similarity=0.194  Sum_probs=144.8

Q ss_pred             CcCCCCCCCceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccC--Ce
Q psy3337          88 ILNSIDSKEKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK--EI  162 (297)
Q Consensus        88 ~l~~~~~~d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v  162 (297)
                      .+..+|..|+.|.| |+.+-+.-.+.- ....+.|.+++|+.. ...|++++.+|.+.|||++..+++..+..+..  .+
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~  209 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHC  209 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccce
Confidence            34679999999999 877644433331 235677999999985 46789999999999999998888888876654  47


Q ss_pred             eEEEEccCC-CEEEEEeCC---CcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCC-eEEEEeccCcccc
Q psy3337         163 DDVDFSISG-EQIVSIAKD---GKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKR-SRLFTLANPLAQN  236 (297)
Q Consensus       163 ~~~~~sp~~-~~l~s~~~d---~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~~~  236 (297)
                      ..++|+|+. ..+++++.|   -.|.+||+|. ..+++.+.+|...          +-.+.|++.. .++++++-     
T Consensus       210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G----------ilslsWc~~D~~lllSsgk-----  274 (1049)
T KOG0307|consen  210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG----------ILSLSWCPQDPRLLLSSGK-----  274 (1049)
T ss_pred             eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc----------eeeeccCCCCchhhhcccC-----
Confidence            899999965 466666655   4589999984 3566777777622          2236677766 66777544     


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCC-EEEEEecCCCeEEEEEeCCce
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~  294 (297)
                         |+.|.+|+..+++.+..+..... +..+.|+|... .+++++. ||.|.||.+.++.
T Consensus       275 ---D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf-dgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  275 ---DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF-DGKISIYSLQGTD  330 (1049)
T ss_pred             ---CCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee-ccceeeeeeecCC
Confidence               99999999999999999988655 99999999655 6777777 9999999987654

>KOG1063|consensus

Probab=99.67  E-value=6e-15  Score=127.89  Aligned_cols=191  Identities=12%  Similarity=0.146  Sum_probs=138.8

Q ss_pred             CCCcCCCCCCCceEEE-EeeCC--CeEEEEecCCCCcEEEEEEecCC---CEEEEEcCCCcEEEEeCCCCe---------
Q psy3337          86 PPILNSIDSKEKNLRF-GFKTF--DSVQTVFAGSESLQRVVRLSRNG---DLMVTGGTDGHLRLWSFPKMK---------  150 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~-~~~~~--~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~~~d~~i~iwd~~~~~---------  150 (297)
                      ..++...|+.+..|.+ .-.++  +.+..+. ||++.|.+++|...+   -+|++++.|..|+||.+.-+.         
T Consensus       158 ~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~-GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~  236 (764)
T KOG1063|consen  158 KTFLLACGGSKFVVDLYSSSADSFARVAELE-GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED  236 (764)
T ss_pred             CcEEEEecCcceEEEEeccCCcceeEEEEee-ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc
Confidence            3445567777777777 33333  3455566 999999999998754   488999999999999863211         


Q ss_pred             ------------eeE----------EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeccCCCCce
Q psy3337         151 ------------PLL----------HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG--SLSKELKWNTPDNIK  206 (297)
Q Consensus       151 ------------~~~----------~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~~~~  206 (297)
                                  ...          .+.+|.+.|+++.|+|.+..|++++.|.++.+|...+.  --+.......-.   
T Consensus       237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g---  313 (764)
T KOG1063|consen  237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG---  313 (764)
T ss_pred             ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc---
Confidence                        111          12489999999999999999999999999999987643  233333211100   


Q ss_pred             EEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC---CceEEEeccCCC-eEEEEEcCCCCEEEEEecCC
Q psy3337         207 YLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS---GRLRLAREMKES-LSALAVRDDGRFVAVGTMFT  282 (297)
Q Consensus       207 ~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~---~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~d  282 (297)
                        -.+..|...-|+|++..+++-+.        .|..++|-...   ......+.+|-. |..++|+|.|.+|++.+. |
T Consensus       314 --g~a~GF~g~lw~~n~~~ii~~g~--------~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-D  382 (764)
T KOG1063|consen  314 --GSAGGFWGGLWSPNSNVIIAHGR--------TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-D  382 (764)
T ss_pred             --ccccceeeEEEcCCCCEEEEecc--------cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc-c
Confidence              12334556778999988888555        89999998333   234455677766 999999999999999999 9


Q ss_pred             CeEEEEEeC
Q psy3337         283 GSVFVYIAF  291 (297)
Q Consensus       283 g~i~vwd~~  291 (297)
                      .+-|+|-..
T Consensus       383 QTTRlFa~w  391 (764)
T KOG1063|consen  383 QTTRLFARW  391 (764)
T ss_pred             cceeeeccc
Confidence            999998654

>KOG2110|consensus

Probab=99.67  E-value=3.3e-14  Score=115.05  Aligned_cols=137  Identities=16%  Similarity=0.211  Sum_probs=114.1

Q ss_pred             eEEE-EeeCCCeEEEEec--CCCCcEEEEEEecCCCEEEEE--cCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          98 NLRF-GFKTFDSVQTVFA--GSESLQRVVRLSRNGDLMVTG--GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      .|+| |+.+.+.+.++..  .+...+.++++++.+.+|+.-  -..|.|.|||..+.+++..+.+|.+.+.+++|+|+|.
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~  186 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT  186 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC
Confidence            4788 8889888888872  355567777777777788853  3468999999999999999999999999999999999


Q ss_pred             EEEEEeCCCc-EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         173 QIVSIAKDGK-AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       173 ~l~s~~~d~~-v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      +||+++..|+ |+|+.+.+|+.+.+|+-..        .++.+.+++|+|++++|.+.++        .++|++|.+..
T Consensus       187 llATASeKGTVIRVf~v~~G~kl~eFRRG~--------~~~~IySL~Fs~ds~~L~~sS~--------TeTVHiFKL~~  249 (391)
T KOG2110|consen  187 LLATASEKGTVIRVFSVPEGQKLYEFRRGT--------YPVSIYSLSFSPDSQFLAASSN--------TETVHIFKLEK  249 (391)
T ss_pred             EEEEeccCceEEEEEEcCCccEeeeeeCCc--------eeeEEEEEEECCCCCeEEEecC--------CCeEEEEEecc
Confidence            9999999887 6799999999999986432        2566778999999999988665        88999998763

>KOG0649|consensus

Probab=99.67  E-value=2.6e-15  Score=115.11  Aligned_cols=162  Identities=15%  Similarity=0.188  Sum_probs=122.3

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCC----------CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPK----------MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~  189 (297)
                      |.+-+|+|.+++|+.|..+|.|.++.+.+          ...+...++|.++++.++|.  ..+|++++ ||.|+-|..+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence            55678999999999999999999998742          22455678999999999998  34666664 5999998765


Q ss_pred             CCce------eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-
Q psy3337         190 NGSL------SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-  262 (297)
Q Consensus       190 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-  262 (297)
                      ....      +.....  |.. .-......++.+...|....+++++.        |+.++.||+++|+..+.+++|.. 
T Consensus        90 E~~es~~~K~lwe~~~--P~~-~~~~evPeINam~ldP~enSi~~AgG--------D~~~y~~dlE~G~i~r~~rGHtDY  158 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKI--PMQ-VDAVEVPEINAMWLDPSENSILFAGG--------DGVIYQVDLEDGRIQREYRGHTDY  158 (325)
T ss_pred             hhhhhccchhhhhhcC--ccc-cCcccCCccceeEeccCCCcEEEecC--------CeEEEEEEecCCEEEEEEcCCcce
Confidence            3221      111111  111 00111223556777888887888655        99999999999999999999998 


Q ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         263 LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       263 v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |.++.--.....+++|++ ||++++||+++++.+
T Consensus       159 vH~vv~R~~~~qilsG~E-DGtvRvWd~kt~k~v  191 (325)
T KOG0649|consen  159 VHSVVGRNANGQILSGAE-DGTVRVWDTKTQKHV  191 (325)
T ss_pred             eeeeeecccCcceeecCC-CccEEEEecccccee
Confidence            999988555667889999 999999999998875

>KOG2919|consensus

Probab=99.67  E-value=4.2e-15  Score=118.30  Aligned_cols=174  Identities=14%  Similarity=0.237  Sum_probs=135.2

Q ss_pred             CCCCCceEEE-Ee-eCCCeEE---EEe---cCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCe
Q psy3337          92 IDSKEKNLRF-GF-KTFDSVQ---TVF---AGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI  162 (297)
Q Consensus        92 ~~~~d~~i~~-~~-~~~~~~~---~~~---~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  162 (297)
                      -++..+.|++ +. +.|....   ++.   .+..+-|.|++|+| +...++.|+....+-||.-..+.++..+-+|.+.|
T Consensus       174 faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv  253 (406)
T KOG2919|consen  174 FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV  253 (406)
T ss_pred             eecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence            3456678888 76 5554221   221   13467789999999 55699999999999999888889999999999999


Q ss_pred             eEEEEccCCCEEEEEeC-CCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         163 DDVDFSISGEQIVSIAK-DGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~-d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      +.+.|.++|+.|++|.+ |..|-+||++. +.++..+..|..+....++       +...|+++.|++        |+.+
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~-------FDld~~~~~Las--------G~td  318 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRIL-------FDLDPKGEILAS--------GDTD  318 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEE-------EecCCCCceeec--------cCCC
Confidence            99999999999999985 77899999984 5667777766542222222       335788998888        7779


Q ss_pred             CeEEEEeCCC-CceEEEeccCCC-eEEEEEcCCCCEEEEEec
Q psy3337         241 SYVQQWDVDS-GRLRLAREMKES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       241 ~~i~~wd~~~-~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~  280 (297)
                      |.|++||+.. +..+..+..++. ++.++++|--.++++++.
T Consensus       319 G~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  319 GSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             ccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            9999999998 776777766666 999999998778887774

>KOG0290|consensus

Probab=99.66  E-value=3.7e-15  Score=117.05  Aligned_cols=164  Identities=13%  Similarity=0.125  Sum_probs=126.7

Q ss_pred             CCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCe---eeEEeccccCCeeEEEEccCC-CEEEEEeCCCcEEEEEcC
Q psy3337         115 GSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMK---PLLHIEAHSKEIDDVDFSISG-EQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       115 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~d~~v~lwd~~  189 (297)
                      .+.+++++..|+. +.+++.+++-|.+..|||++++.   ....+-+|..+|.+++|...+ ..||+.+.||.|++||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            5778899999997 67899999999999999999863   345677899999999999854 578999999999999998


Q ss_pred             CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCC-eEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC-eEEE
Q psy3337         190 NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKR-SRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES-LSAL  266 (297)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~  266 (297)
                      .-+-...+. ..|......      -.++|+++. +++++...       ....|.+.|++. ..++..+++|.. |+.+
T Consensus       228 ~leHSTIIY-E~p~~~~pL------lRLswnkqDpnymATf~~-------dS~~V~iLDiR~P~tpva~L~~H~a~VNgI  293 (364)
T KOG0290|consen  228 SLEHSTIIY-EDPSPSTPL------LRLSWNKQDPNYMATFAM-------DSNKVVILDIRVPCTPVARLRNHQASVNGI  293 (364)
T ss_pred             ccccceEEe-cCCCCCCcc------eeeccCcCCchHHhhhhc-------CCceEEEEEecCCCcceehhhcCcccccce
Confidence            654322221 222211122      236677654 45666544       356899999997 778899999988 9999


Q ss_pred             EEcCC-CCEEEEEecCCCeEEEEEeCCc
Q psy3337         267 AVRDD-GRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       267 ~~s~d-g~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +|.|. ...|++++. |..+.+||+.+.
T Consensus       294 aWaPhS~~hictaGD-D~qaliWDl~q~  320 (364)
T KOG0290|consen  294 AWAPHSSSHICTAGD-DCQALIWDLQQM  320 (364)
T ss_pred             EecCCCCceeeecCC-cceEEEEecccc
Confidence            99995 568999999 999999999764

>KOG1034|consensus

Probab=99.66  E-value=1.6e-14  Score=115.28  Aligned_cols=127  Identities=15%  Similarity=0.178  Sum_probs=102.3

Q ss_pred             eEEEEe-cCCCCcEEEEEEecCC----CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC-CCEEEEEeCCC
Q psy3337         108 SVQTVF-AGSESLQRVVRLSRNG----DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS-GEQIVSIAKDG  181 (297)
Q Consensus       108 ~~~~~~-~~h~~~v~~~~~s~~g----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~d~  181 (297)
                      .++... ..|......++|+.+.    .++|.|+.-|.|+|.|+.+++....+.+|...|+.+.|.|+ .+++++++.|.
T Consensus        79 ~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~  158 (385)
T KOG1034|consen   79 LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH  158 (385)
T ss_pred             eeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc
Confidence            444444 3577888999998753    47899999999999999999999999999999999999995 46889999999


Q ss_pred             cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         182 KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       182 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|++|++++..++..+.+-...       ...+-++.|+++|.++++++.        |..|.+|++.
T Consensus       159 svRlwnI~~~~Cv~VfGG~egH-------rdeVLSvD~~~~gd~i~ScGm--------Dhslk~W~l~  211 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGH-------RDEVLSVDFSLDGDRIASCGM--------DHSLKLWRLN  211 (385)
T ss_pred             eEEEEeccCCeEEEEecccccc-------cCcEEEEEEcCCCCeeeccCC--------cceEEEEecC
Confidence            9999999999999888654321       112234778999998888655        7788888776

>KOG0322|consensus

Probab=99.65  E-value=6.1e-15  Score=114.35  Aligned_cols=159  Identities=15%  Similarity=0.175  Sum_probs=122.5

Q ss_pred             CCCCcEEEEEEec-CCC--EEEEEcCCCcEEEEeCCCCee----------eEEeccccCCeeEEEEccCCCEEEEEeCCC
Q psy3337         115 GSESLQRVVRLSR-NGD--LMVTGGTDGHLRLWSFPKMKP----------LLHIEAHSKEIDDVDFSISGEQIVSIAKDG  181 (297)
Q Consensus       115 ~h~~~v~~~~~s~-~g~--~l~s~~~d~~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~  181 (297)
                      +..+.+.|..+.. ++.  +|++|.++|.|.+||+.++..          ......|..+|.++.+.+.-..=++++.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            4556677777554 333  466888999999999988733          334457999999999988666667788888


Q ss_pred             cEEEEEcCC--CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc
Q psy3337         182 KAFVWNSKN--GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM  259 (297)
Q Consensus       182 ~v~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  259 (297)
                      .+..|.+..  +.+....        ......+.+..+.+-||++.+++++.        |+.|++|..++.+++..+..
T Consensus       228 kl~~~Sl~~s~gslq~~~--------e~~lknpGv~gvrIRpD~KIlATAGW--------D~RiRVyswrtl~pLAVLky  291 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRK--------EITLKNPGVSGVRIRPDGKILATAGW--------DHRIRVYSWRTLNPLAVLKY  291 (323)
T ss_pred             cceeeeeccccCcccccc--------eEEecCCCccceEEccCCcEEeeccc--------CCcEEEEEeccCCchhhhhh
Confidence            889998863  2221110        11222233445677899999999666        99999999999999999999


Q ss_pred             CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         260 KES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       260 ~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      |.. |.+++|+|+...+++++. |++|.+|++
T Consensus       292 Hsagvn~vAfspd~~lmAaask-D~rISLWkL  322 (323)
T KOG0322|consen  292 HSAGVNAVAFSPDCELMAAASK-DARISLWKL  322 (323)
T ss_pred             hhcceeEEEeCCCCchhhhccC-CceEEeeec
Confidence            988 999999999999999999 999999997

>KOG1445|consensus

Probab=99.64  E-value=6.2e-16  Score=132.96  Aligned_cols=159  Identities=19%  Similarity=0.272  Sum_probs=127.8

Q ss_pred             CCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCC-------eeeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEE
Q psy3337         116 SESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKM-------KPLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       116 h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lw  186 (297)
                      ....|+.+.|.| |...||.++.||.|++|.+..+       ++...+..|...|+++.|+| -...|++++.|.+|++|
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            345689999999 7789999999999999998542       35567889999999999999 45689999999999999


Q ss_pred             EcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc-eEEEeccC--CCe
Q psy3337         187 NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR-LRLAREMK--ESL  263 (297)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~--~~v  263 (297)
                      |+++++....+.+|.    .-++      .++|+|+|+.++++.-        |++|++|..++++ .++.-.+.  ..-
T Consensus       706 Dl~~~~~~~~l~gHt----dqIf------~~AWSpdGr~~AtVcK--------Dg~~rVy~Prs~e~pv~Eg~gpvgtRg  767 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHT----DQIF------GIAWSPDGRRIATVCK--------DGTLRVYEPRSREQPVYEGKGPVGTRG  767 (1012)
T ss_pred             ehhhhhhhheeccCc----Ccee------EEEECCCCcceeeeec--------CceEEEeCCCCCCCccccCCCCccCcc
Confidence            999999988998887    3333      3889999999999776        9999999999854 34433332  124


Q ss_pred             EEEEEcCCCCEEEEEecCC----CeEEEEEeCCc
Q psy3337         264 SALAVRDDGRFVAVGTMFT----GSVFVYIAFSL  293 (297)
Q Consensus       264 ~~~~~s~dg~~l~~~~~~d----g~i~vwd~~~~  293 (297)
                      ..+.|.-||+++++.+. |    ..|.+||.++.
T Consensus       768 ARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGF-DKSSERQVQMYDAQTL  800 (1012)
T ss_pred             eeEEEEecCcEEEEecc-cccchhhhhhhhhhhc
Confidence            56778889999888775 5    45788887654

>KOG1007|consensus

Probab=99.64  E-value=4.9e-15  Score=116.26  Aligned_cols=165  Identities=15%  Similarity=0.210  Sum_probs=125.8

Q ss_pred             eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-eEEec-----cccCCeeEEEEcc--CCCEEEEEeC
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-LLHIE-----AHSKEIDDVDFSI--SGEQIVSIAK  179 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~sp--~~~~l~s~~~  179 (297)
                      ++..+...+-+.|.|+.|.|++..+++.. |..|.+|++..+.. +..+.     .|....++-+|+|  +++.+++. .
T Consensus       114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~  191 (370)
T KOG1007|consen  114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-S  191 (370)
T ss_pred             HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-C
Confidence            34444434556899999999999888875 88999999986654 33332     3566788999999  78888775 6


Q ss_pred             CCcEEEEEcCCCceeeeee-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEe
Q psy3337         180 DGKAFVWNSKNGSLSKELK-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAR  257 (297)
Q Consensus       180 d~~v~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~  257 (297)
                      |+++..||+++......+. .|.          -++..+.|+|+.++++..       +++|+.|++||.+. ..++..+
T Consensus       192 d~tl~~~D~RT~~~~~sI~dAHg----------q~vrdlDfNpnkq~~lvt-------~gDdgyvriWD~R~tk~pv~el  254 (370)
T KOG1007|consen  192 DSTLQFWDLRTMKKNNSIEDAHG----------QRVRDLDFNPNKQHILVT-------CGDDGYVRIWDTRKTKFPVQEL  254 (370)
T ss_pred             CCcEEEEEccchhhhcchhhhhc----------ceeeeccCCCCceEEEEE-------cCCCccEEEEeccCCCcccccc
Confidence            8899999999776655553 221          123357789998766553       55699999999997 6688899


Q ss_pred             ccCCC-eEEEEEcCC-CCEEEEEecCCCeEEEEEeCC
Q psy3337         258 EMKES-LSALAVRDD-GRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       258 ~~~~~-v~~~~~s~d-g~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..|.. |.++.|+|. .++|++|+. |..|.+|...+
T Consensus       255 ~~HsHWvW~VRfn~~hdqLiLs~~S-Ds~V~Lsca~s  290 (370)
T KOG1007|consen  255 PGHSHWVWAVRFNPEHDQLILSGGS-DSAVNLSCASS  290 (370)
T ss_pred             CCCceEEEEEEecCccceEEEecCC-CceeEEEeccc
Confidence            99988 999999994 567889998 99999998654

>KOG1188|consensus

Probab=99.63  E-value=7.9e-15  Score=117.47  Aligned_cols=151  Identities=17%  Similarity=0.269  Sum_probs=114.6

Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceE
Q psy3337         130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKY  207 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~  207 (297)
                      ..+|++-..|.|++||..+++.+..++++...++.+.|..  ....+.+++.||+|++||+|+......+......+   
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~---  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG---  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC---
Confidence            5688888999999999999999999999999999999976  46789999999999999999876665554432111   


Q ss_pred             EEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce-EEEe-ccCCC-eEEEEEcC-CCCEEEEEecCCC
Q psy3337         208 LFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL-RLAR-EMKES-LSALAVRD-DGRFVAVGTMFTG  283 (297)
Q Consensus       208 ~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~-~~~~-~~~~~-v~~~~~s~-dg~~l~~~~~~dg  283 (297)
                          ..|..++.+-.+..+++...    .-..+-.|.+||++..+. +..+ ..|.. |++++|+| +...|++|+. ||
T Consensus       118 ----~~f~~ld~nck~~ii~~GtE----~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv-DG  188 (376)
T KOG1188|consen  118 ----TPFICLDLNCKKNIIACGTE----LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV-DG  188 (376)
T ss_pred             ----CcceEeeccCcCCeEEeccc----cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc-cc
Confidence                12223444445555655332    123577899999998654 5554 34555 99999999 5678999999 99


Q ss_pred             eEEEEEeCC
Q psy3337         284 SVFVYIAFS  292 (297)
Q Consensus       284 ~i~vwd~~~  292 (297)
                      .|.|||+..
T Consensus       189 LvnlfD~~~  197 (376)
T KOG1188|consen  189 LVNLFDTKK  197 (376)
T ss_pred             eEEeeecCC
Confidence            999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=2.5e-13  Score=115.72  Aligned_cols=186  Identities=10%  Similarity=0.129  Sum_probs=119.0

Q ss_pred             CCCCCceEEE-EeeC-CC---eEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCeeeE-------Eeccc
Q psy3337          92 IDSKEKNLRF-GFKT-FD---SVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKPLL-------HIEAH  158 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~-~~---~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~-------~~~~~  158 (297)
                      +...++.|.+ ++.+ +.   .+..+  .+.....+++++|++++++ +...++.|.+||+.+...+.       .+. .
T Consensus        97 ~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~  173 (330)
T PRK11028         97 ASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-E  173 (330)
T ss_pred             EEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-C
Confidence            3344677777 7653 32   22222  2223456889999998885 55567999999997632221       111 1


Q ss_pred             cCCeeEEEEccCCCEEEEEeC-CCcEEEEEcCC--Cc--eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         159 SKEIDDVDFSISGEQIVSIAK-DGKAFVWNSKN--GS--LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~-d~~v~lwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      ......+.|+|++++++++.. +++|.+||+..  +.  .+..+.........    ...-..+.++|++++++++..  
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~i~~~pdg~~lyv~~~--  247 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD----TRWAADIHITPDGRHLYACDR--  247 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC----CccceeEEECCCCCEEEEecC--
Confidence            234678999999999988876 89999999973  32  23333221110000    000113778999999998632  


Q ss_pred             ccccCCCCeEEEEeCCCCc----eEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         234 AQNKRGISYVQQWDVDSGR----LRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                           .++.|.+|++....    .+...........+.|+|||++|+++...+++|.+|++.
T Consensus       248 -----~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        248 -----TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             -----CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence                 36899999986532    223332223367899999999999877658999999874

>KOG1009|consensus

Probab=99.63  E-value=3.2e-15  Score=122.13  Aligned_cols=168  Identities=21%  Similarity=0.285  Sum_probs=127.0

Q ss_pred             CCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCe---------eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEE
Q psy3337         117 ESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMK---------PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       117 ~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lw  186 (297)
                      ..+|..+.|.+++. .|+||+.|..|+||-++.+.         .+..+..|...|+.+.|+|+|.+|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            34688999988764 99999999999999885322         234677899999999999999999999999999999


Q ss_pred             EcCCCceeeeeeccC-CCCceEEE------EeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc
Q psy3337         187 NSKNGSLSKELKWNT-PDNIKYLF------KRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM  259 (297)
Q Consensus       187 d~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  259 (297)
                      -...-.. ..-.... .....+..      ....+..++|+|++.++.+        |+.|..+++||+..|+....+..
T Consensus        93 k~~~~~~-~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s--------~s~dns~~l~Dv~~G~l~~~~~d  163 (434)
T KOG1009|consen   93 KQGDVRI-FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS--------GSVDNSVRLWDVHAGQLLAILDD  163 (434)
T ss_pred             EecCcCC-ccccchhhhCccceEEEEEecccccchhhhhccCCCceeee--------eeccceEEEEEeccceeEeeccc
Confidence            7652111 0000000 00001111      1122345889999999988        55699999999999999999999


Q ss_pred             CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         260 KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       260 ~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |+. +..++|.|-++++++=+. |...+++.+..-+
T Consensus       164 h~~yvqgvawDpl~qyv~s~s~-dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLNQYVASKSS-DRHPEGFSAKLKQ  198 (434)
T ss_pred             cccccceeecchhhhhhhhhcc-Ccccceeeeeeee
Confidence            988 999999999999999888 8877777765443

>KOG1524|consensus

Probab=99.62  E-value=1e-14  Score=123.32  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=102.8

Q ss_pred             CCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          91 SIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        91 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ...+.||.+.+-...++....+. .|.+.|.+-.|+|||.-|++++.||.|++|. ++|..-.++.....+|.|++|.|+
T Consensus        79 ~i~s~DGkf~il~k~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   79 LICSNDGRFVILNKSARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             EEEcCCceEEEecccchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCC
Confidence            35667777777445566666666 8999999999999999999999999999998 566554455556778999999998


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .+.++.+. .+.+.+=.+.....+-..+.|.    .++.      .+.|++....+++        |++|...++||..
T Consensus       157 S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHD----GiiL------~~~W~~~s~lI~s--------gGED~kfKvWD~~  216 (737)
T KOG1524|consen  157 SNSIVFCQ-GGHISIKPLAANSKIIRWRAHD----GLVL------SLSWSTQSNIIAS--------GGEDFRFKIWDAQ  216 (737)
T ss_pred             CCceEEec-CCeEEEeecccccceeEEeccC----cEEE------EeecCccccceee--------cCCceeEEeeccc
Confidence            87766553 3456665555444444455554    2333      3678999988888        6679999999976

>KOG0771|consensus

Probab=99.62  E-value=9.6e-15  Score=119.96  Aligned_cols=187  Identities=14%  Similarity=0.108  Sum_probs=135.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc--ccCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA--HSKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~  166 (297)
                      ..+++.|+++|+ +.+....+.... .|...|.++.|+|||++|++-+.| ..+||+.+++..+.....  .......+.
T Consensus       159 latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cR  236 (398)
T KOG0771|consen  159 LATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCR  236 (398)
T ss_pred             eeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhce
Confidence            457889999999 656655555555 889999999999999999999999 899999999976665542  233466777


Q ss_pred             EccCC---CE--EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         167 FSISG---EQ--IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       167 ~sp~~---~~--l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      |+.|+   .+  ++.....+.|++||+.....-..+....     .......+.+++.+++|++++.        |+.||
T Consensus       237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-----~~~~~~siSsl~VS~dGkf~Al--------GT~dG  303 (398)
T KOG0771|consen  237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-----KIKRFKSISSLAVSDDGKFLAL--------GTMDG  303 (398)
T ss_pred             ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-----hhhccCcceeEEEcCCCcEEEE--------eccCC
Confidence            87776   33  3333445677777764222111111111     1111123445788999999998        56699


Q ss_pred             eEEEEeCCCCceEEEec-cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         242 YVQQWDVDSGRLRLARE-MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~-~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .|-+++..+.+.+...+ .|.. |+.+.|+||.+++++.+. |....|..+.-
T Consensus       304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs-~~~~~v~~l~v  355 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS-DNEAAVTKLAV  355 (398)
T ss_pred             cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc-CCceeEEEEee
Confidence            99999999988777665 4766 999999999999999888 88888887653

>KOG4227|consensus

Probab=99.60  E-value=6.6e-14  Score=114.33  Aligned_cols=218  Identities=6%  Similarity=0.102  Sum_probs=154.3

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      |..-|+..++.|++||.|..++||++..-...+                                               
T Consensus        60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-----------------------------------------------   92 (609)
T KOG4227|consen   60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-----------------------------------------------   92 (609)
T ss_pred             ceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------------------------------------
Confidence            444588999999999999999999986533210                                               


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc--cc
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA--HS  159 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~  159 (297)
                                             +.+.+......|...|.|++|....+++++|+.+++|.+.|+++.+.+..+..  ..
T Consensus        93 -----------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~  149 (609)
T KOG4227|consen   93 -----------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR  149 (609)
T ss_pred             -----------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcc
Confidence                                   00123333225778899999999999999999999999999999887776642  23


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc-ee------------eeeeccCCCCceEEEEe---------------
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGS-LS------------KELKWNTPDNIKYLFKR---------------  211 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~-~~------------~~~~~~~~~~~~~~~~~---------------  211 (297)
                      +.|+.+..+|-.+.|++.+.++.|.+||.+... .+            .+...|. ....++...               
T Consensus       150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P-~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP-ETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC-CCceeEEeccccCCCCceeecccc
Confidence            489999999999999999999999999998544 11            1111111 100111000               


Q ss_pred             ----------------eeeeeeeeCCCCeEEEEecc----------------------------------------Cccc
Q psy3337         212 ----------------CRYGLVEDSPKRSRLFTLAN----------------------------------------PLAQ  235 (297)
Q Consensus       212 ----------------~~~~~~~~s~~~~~l~~~~~----------------------------------------~~~~  235 (297)
                                      ..+-.+.|+|+|..++++-.                                        -.++
T Consensus       229 ~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~  308 (609)
T KOG4227|consen  229 RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVA  308 (609)
T ss_pred             chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeee
Confidence                            00112456776665554421                                        0478


Q ss_pred             ccCCCCeEEEEeCCC-----C------------------ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         236 NKRGISYVQQWDVDS-----G------------------RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~-----~------------------~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      +|+.+-.|++|.+..     |                  +.+..+.+|.. +..+.|+|...+|++.+- ...++||.-.
T Consensus       309 tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV-E~~~KlWS~~  387 (609)
T KOG4227|consen  309 TGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV-ENSFKLWSDH  387 (609)
T ss_pred             ccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch-hhheeccccc
Confidence            899999999998763     1                  12356778877 899999999999999998 9999999753

>KOG1523|consensus

Probab=99.60  E-value=6.6e-14  Score=111.41  Aligned_cols=170  Identities=14%  Similarity=0.078  Sum_probs=127.9

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC---CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK---MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKA  183 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v  183 (297)
                      +..+++. .|...|+++.|+|..+.|++|+.|..-++|....   .++...+..+...++++.|+|.++.|++|+....|
T Consensus        46 ~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i  124 (361)
T KOG1523|consen   46 EPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI  124 (361)
T ss_pred             eeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence            3456777 8999999999999999999999999999999843   34666777799999999999999999999999999


Q ss_pred             EEEEcCCCceeeeee-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC-----C-------
Q psy3337         184 FVWNSKNGSLSKELK-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD-----S-------  250 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~-----~-------  250 (297)
                      .||-.+...---.-+ ...|.       ...+.++.|+|++-.+++        |+.|+..+++..-     .       
T Consensus       125 sVcy~E~ENdWWVsKhikkPi-------rStv~sldWhpnnVLlaa--------Gs~D~k~rVfSayIK~Vdekpap~pW  189 (361)
T KOG1523|consen  125 SVCYYEQENDWWVSKHIKKPI-------RSTVTSLDWHPNNVLLAA--------GSTDGKCRVFSAYIKGVDEKPAPTPW  189 (361)
T ss_pred             EEEEEecccceehhhhhCCcc-------ccceeeeeccCCcceecc--------cccCcceeEEEEeeeccccCCCCCCC
Confidence            998765322110000 00111       112345889999988877        7779999998532     1       


Q ss_pred             ------CceEEEeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         251 ------GRLRLAREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       251 ------~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                            |+++..+... +.+..+.|+|+|..|+-.+. |..+.+-|....
T Consensus       190 gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-ds~v~~~da~~p  238 (361)
T KOG1523|consen  190 GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-DSTVSFVDAAGP  238 (361)
T ss_pred             ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-CCceEEeecCCC
Confidence                  3344444333 33999999999999999998 999999886544

>KOG0650|consensus

Probab=99.60  E-value=6.7e-14  Score=119.73  Aligned_cols=174  Identities=16%  Similarity=0.209  Sum_probs=127.2

Q ss_pred             cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC--EEEEEeCCCcEEEEEcCCC
Q psy3337         114 AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE--QIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       114 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~d~~v~lwd~~~~  191 (297)
                      .||++.|.+++..|.|.+|++|+.||+|+||.+.++.++++++- .+.|.+++|+|.+.  .||++ .+..+.|.+..-|
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFG  474 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEE-ecCceEEeCcccc
Confidence            49999999999999999999999999999999999999998874 55899999999765  34444 3344666654433


Q ss_pred             cee---------eeeec-cCCCC----------------c-eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         192 SLS---------KELKW-NTPDN----------------I-KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       192 ~~~---------~~~~~-~~~~~----------------~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      ..+         ..... ..|+.                . ..+-....+..+.|+..|.||+++..     .+....|.
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~-----~~~~~~Vl  549 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP-----DSGNKSVL  549 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc-----CCCcceEE
Confidence            111         11100 00110                0 11111223567999999999999876     55667899


Q ss_pred             EEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         245 QWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |.++........|..... |.++.|+|...+|++++  ...|+|||+-..+.+
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv  600 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV  600 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHH
Confidence            999987666666654444 99999999999999999  589999998765543

>KOG1310|consensus

Probab=99.60  E-value=3.4e-15  Score=126.45  Aligned_cols=171  Identities=16%  Similarity=0.209  Sum_probs=123.3

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe-ccccCCeeEEEEcc--CCCEEEEEeCCCcEEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVDFSI--SGEQIVSIAKDGKAFV  185 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp--~~~~l~s~~~d~~v~l  185 (297)
                      .+.+. ||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|  +.+.+++|..|..|++
T Consensus        43 E~eL~-GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELT-GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhc-cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            45566 99999999999999999999999999999999877777766 58999999999999  5678999999999999


Q ss_pred             EEcCCCceeeeeeccCCCCc--eEEEEeeeeeeeeeCCCC-eEEEEeccCcccccCCCCeEEEEeCCCCc-------eEE
Q psy3337         186 WNSKNGSLSKELKWNTPDNI--KYLFKRCRYGLVEDSPKR-SRLFTLANPLAQNKRGISYVQQWDVDSGR-------LRL  255 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-------~~~  255 (297)
                      +|+...+.-..  .|.+...  .+.....++..++..|++ ..+.+        +++||+|+.+|++...       +..
T Consensus       122 fdl~~~~~~~~--d~~~~~~~~~~~cht~rVKria~~p~~Phtfws--------asEDGtirQyDiREph~c~p~~~~~~  191 (758)
T KOG1310|consen  122 FDLDSSKEGGM--DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS--------ASEDGTIRQYDIREPHVCNPDEDCPS  191 (758)
T ss_pred             Eeccccccccc--ccCccchhhhhhhhhhhhhheecCCCCCceEEE--------ecCCcceeeecccCCccCCccccccH
Confidence            99974221100  1111110  111122344556777888 44555        4569999999998621       111


Q ss_pred             E-eccCC---CeEEEEEcCC-CCEEEEEecCCCeEEEEEeC
Q psy3337         256 A-REMKE---SLSALAVRDD-GRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       256 ~-~~~~~---~v~~~~~s~d-g~~l~~~~~~dg~i~vwd~~  291 (297)
                      . ...+.   ...++.++|. ..+|++|+. |-..++||.+
T Consensus       192 ~l~ny~~~lielk~ltisp~rp~~laVGgs-dpfarLYD~R  231 (758)
T KOG1310|consen  192 ILVNYNPQLIELKCLTISPSRPYYLAVGGS-DPFARLYDRR  231 (758)
T ss_pred             HHHHhchhhheeeeeeecCCCCceEEecCC-Cchhhhhhhh
Confidence            1 11111   2678999995 567899999 9999999943

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6.8e-13  Score=117.08  Aligned_cols=178  Identities=16%  Similarity=0.087  Sum_probs=123.4

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC---CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT---DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|.+ |.. +...+.+. .|...+.+.+|+|||+.|+..+.   +..|++||+.+++. ..+..+.+.+...+|+|||+
T Consensus       182 ~~l~~~d~d-g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCC-CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC
Confidence            36777 654 44445565 77888999999999998887653   46899999988765 34555666788999999999


Q ss_pred             EEE-EEeCCCc--EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIV-SIAKDGK--AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~-s~~~d~~--v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|+ +.+.++.  |++||+.++... .+..+...          .....|+|||+.|+..+.     ......|++||+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~----------~~~~~~spDG~~i~f~s~-----~~g~~~Iy~~d~~  322 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAI----------DTSPSYSPDGSQIVFESD-----RSGSPQLYVMNAD  322 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceE-EccCCCCc----------cCceeEcCCCCEEEEEEC-----CCCCCeEEEEECC
Confidence            876 4555554  777898776543 33322210          112568999999987664     3334579999988


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCC--CeEEEEEeCCc
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFT--GSVFVYIAFSL  293 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d--g~i~vwd~~~~  293 (297)
                      +++..........+..+.|+|||++|+......  ..|.+||+.++
T Consensus       323 g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        323 GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            766554433333477789999999998776412  36888887544

>KOG1538|consensus

Probab=99.59  E-value=2.4e-13  Score=117.90  Aligned_cols=184  Identities=14%  Similarity=0.180  Sum_probs=126.2

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-C-------eeeEEe--c--------
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-M-------KPLLHI--E--------  156 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~-------~~~~~~--~--------  156 (297)
                      +..+.+ |...|..++++. +|.+.|+|++|+.||+.+++|+.|..|.+|...- |       ..++.+  .        
T Consensus        32 g~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~Las  110 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLAS  110 (1081)
T ss_pred             CCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhh
Confidence            346777 999999999999 9999999999999999999999999999998531 1       111110  0        


Q ss_pred             -----------------cc--cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCc-eEEEEee----
Q psy3337         157 -----------------AH--SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNI-KYLFKRC----  212 (297)
Q Consensus       157 -----------------~~--~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~-~~~~~~~----  212 (297)
                                       .|  ...+.+.+|..||++|+.|-.+|+|.+-+- ++++...+..+...+. .+.+..+    
T Consensus       111 CsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  111 CSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             cchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCC
Confidence                             01  235677888889999999999999988753 3333323322110000 0000000    


Q ss_pred             ----------------ee------------------eeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec
Q psy3337         213 ----------------RY------------------GLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE  258 (297)
Q Consensus       213 ----------------~~------------------~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~  258 (297)
                                      .|                  -++.+.++|.+++.        |+.|+.+.+|--. |-.+-++.
T Consensus       190 ~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li--------GGsdk~L~~fTR~-GvrLGTvg  260 (1081)
T KOG1538|consen  190 EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL--------GGSDKQLSLFTRD-GVRLGTVG  260 (1081)
T ss_pred             CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE--------ccCCCceEEEeec-CeEEeecc
Confidence                            00                  01344556666666        5568999988755 54455554


Q ss_pred             cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         259 MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       259 ~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      ..+. |++++..|++++++.|+. ||+|-.|++-
T Consensus       261 ~~D~WIWtV~~~PNsQ~v~~GCq-DGTiACyNl~  293 (1081)
T KOG1538|consen  261 EQDSWIWTVQAKPNSQYVVVGCQ-DGTIACYNLI  293 (1081)
T ss_pred             ccceeEEEEEEccCCceEEEEEc-cCeeehhhhH
Confidence            4444 999999999999999999 9999998864

>KOG2394|consensus

Probab=99.58  E-value=5.8e-14  Score=118.71  Aligned_cols=135  Identities=18%  Similarity=0.224  Sum_probs=105.4

Q ss_pred             CCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCC--------------C--------------eeeEEeccccCCeeEEEE
Q psy3337         117 ESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPK--------------M--------------KPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus       117 ~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~--------------~--------------~~~~~~~~~~~~v~~~~~  167 (297)
                      ...|+|+.|-|.+ ..++.+-.+|.+++||...              +              .++..+.--.+.|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            4679999999954 6777888999999997421              1              112222223457889999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      +|||++||+.+.||.++|||..+-+.+..++..-          ..+-+++|+|||++|++        |.+|--|.||.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF----------GGLLCvcWSPDGKyIvt--------GGEDDLVtVwS  360 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF----------GGLLCVCWSPDGKYIVT--------GGEDDLVTVWS  360 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhc----------cceEEEEEcCCccEEEe--------cCCcceEEEEE
Confidence            9999999999999999999998766554443211          12335889999999999        77799999999


Q ss_pred             CCCCceEEEeccCCC-eEEEEEc
Q psy3337         248 VDSGRLRLAREMKES-LSALAVR  269 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~-v~~~~~s  269 (297)
                      +..++.+..=.+|.. |..++|.
T Consensus       361 f~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             eccceEEEeccccccceeeEeec
Confidence            999999999899887 9999998

>KOG1188|consensus

Probab=99.58  E-value=9.4e-14  Score=111.38  Aligned_cols=184  Identities=14%  Similarity=0.167  Sum_probs=137.5

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCee--eEEecccc-CCeeEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMKP--LLHIEAHS-KEIDDV  165 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~-~~v~~~  165 (297)
                      .+-..++|++ +..+++.+..+. ++.+.+..+.|..  .+..+.+|+.||+|++||++....  ...+..+. .+..++
T Consensus        45 v~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~l  123 (376)
T KOG1188|consen   45 VSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICL  123 (376)
T ss_pred             EEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEe
Confidence            4556789999 999999999999 9999999999987  457899999999999999987553  34445555 467788


Q ss_pred             EEccCCCEEEEEe----CCCcEEEEEcCCCce-eeeee-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         166 DFSISGEQIVSIA----KDGKAFVWNSKNGSL-SKELK-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       166 ~~sp~~~~l~s~~----~d~~v~lwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      +.+..++.+++|.    .|..|.+||+|..+. +..+. .|..+          +..+.|+|+...++.       +||.
T Consensus       124 d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD----------VT~lrFHP~~pnlLl-------SGSv  186 (376)
T KOG1188|consen  124 DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD----------VTQLRFHPSDPNLLL-------SGSV  186 (376)
T ss_pred             eccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc----------ceeEEecCCCCCeEE-------eecc
Confidence            8877888888875    367899999997655 44432 33322          345778887654443       3788


Q ss_pred             CCeEEEEeCCCCc----eEEEeccCCCeEEEEEcCCC-CEEEEEecCCCeEEEEEeCCce
Q psy3337         240 ISYVQQWDVDSGR----LRLAREMKESLSALAVRDDG-RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       240 d~~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ||.|.+||+..-.    ++..+.....|.++.|..++ +.|.+-+. .++..+|++..+.
T Consensus       187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH-~Etf~~~ele~~~  245 (376)
T KOG1188|consen  187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH-METFAIYELEDGS  245 (376)
T ss_pred             cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc-cCceeEEEccCCC
Confidence            9999999998632    33444444559999999887 34666666 8999999998765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=5.5e-13  Score=104.12  Aligned_cols=132  Identities=18%  Similarity=0.222  Sum_probs=97.6

Q ss_pred             eEEEEecCCCCcEEEEEEecCCCEEEEE--cCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC---Cc
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGDLMVTG--GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD---GK  182 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---~~  182 (297)
                      .+..+.....++|.+++|+|+|+.|+..  ..++.|.+||++ ++.+..+.  ...+..+.|+|+|++|++++.+   |.
T Consensus        50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~  126 (194)
T PF08662_consen   50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD  126 (194)
T ss_pred             ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence            3444432455679999999999887654  457799999996 66666664  5678899999999999998754   66


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR  257 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  257 (297)
                      |.+||+++.+.+.......            ...++|+|+|++++++....  .-..|..++||+.. |+.+...
T Consensus       127 l~~wd~~~~~~i~~~~~~~------------~t~~~WsPdGr~~~ta~t~~--r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  127 LEFWDVRKKKKISTFEHSD------------ATDVEWSPDGRYLATATTSP--RLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEEECCCCEEeeccccCc------------EEEEEEcCCCCEEEEEEecc--ceeccccEEEEEec-CeEeEec
Confidence            9999999888877664321            23478999999999976410  12358899999986 6666544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=9.8e-13  Score=115.95  Aligned_cols=179  Identities=13%  Similarity=0.102  Sum_probs=121.1

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|.+ |.. +...+.+. .+...+.+.+|+|||+.|+..+.+   ..|++||+.+++.. .+....+...+++|+|||+
T Consensus       184 ~~l~i~D~~-g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSD-GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCC-CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCC
Confidence            45777 654 44445565 667788999999999999887643   46999999877653 3333444556889999999


Q ss_pred             EEE-EEeCCC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIV-SIAKDG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~-s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|+ +.+.++  .|++||+.+++.. .+..+..          ....+.|+|||+.|+..+.     ......|+++|+.
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~----------~~~~~~~spDG~~l~f~sd-----~~g~~~iy~~dl~  324 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG----------IDTEPTWAPDGKSIYFTSD-----RGGRPQIYRVAAS  324 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeE-ECccCCC----------CccceEECCCCCEEEEEEC-----CCCCceEEEEECC
Confidence            775 445555  5999999877643 3332211          0123568999998887654     1122358888887


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC---eEEEEEeCCcee
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG---SVFVYIAFSLQM  295 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg---~i~vwd~~~~~~  295 (297)
                      +++.............++|+|||++|+..+. ++   .|.+||+.+++.
T Consensus       325 ~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        325 GGSAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             CCCeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCe
Confidence            7665433322222567899999999987765 33   699999987653

>KOG1272|consensus

Probab=99.56  E-value=2.8e-14  Score=118.60  Aligned_cols=261  Identities=16%  Similarity=0.183  Sum_probs=169.5

Q ss_pred             eeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhh-----ccCCCcccccccCCCCC
Q psy3337           6 HSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAK-----QKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         6 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~~   80 (297)
                      |..+|+.|+.+|.-+++-.++.....+..+....+.-   +..+-..--.-.+...+.     +..|- |.-=-+...+.
T Consensus       137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv---~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHClk~~~~v  212 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETV---RDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCLKRHIRV  212 (545)
T ss_pred             ecCCccEEEecCCccceeeeecccceeeeeeehhhhh---hhhhhhcchHHHHhhhhceEEEecCCCc-EEeehhhcCch
Confidence            6788999999999999999988765543322222221   111100000000000000     00000 00000001111


Q ss_pred             CCCC--CCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          81 DKIE--DPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        81 ~~~~--~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                      ...+  +.-+|..+++..|-++. |+.+|+.+..+. .-.+.+..++-+|-...+-+|...|+|.+|.....+++..+.+
T Consensus       213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc  291 (545)
T KOG1272|consen  213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC  291 (545)
T ss_pred             hhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence            1122  22345668888899999 999999999888 6667788899999888999999999999999999999999999


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      |.++|.++++.++|++++|++.|..++|||++....+.++..+.|.           ..+++|..|  +++++.      
T Consensus       292 H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a-----------~~ls~Sqkg--lLA~~~------  352 (545)
T KOG1272|consen  292 HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA-----------SNLSLSQKG--LLALSY------  352 (545)
T ss_pred             cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc-----------ccccccccc--ceeeec------
Confidence            9999999999999999999999999999999987766665432221           235566666  444333      


Q ss_pred             CCCCeEEEEeCC-C--CceEEEeccC---CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         238 RGISYVQQWDVD-S--GRLRLAREMK---ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       238 ~~d~~i~~wd~~-~--~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                        ...+.+|.-. .  +.....+-.|   ..|..+.|.|-...|.+|.. .|.-.+.=.-+|
T Consensus       353 --G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~-~G~tsilVPGsG  411 (545)
T KOG1272|consen  353 --GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA-GGITSILVPGSG  411 (545)
T ss_pred             --CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc-CCceeEeccCCC
Confidence              4578888532 2  1222222222   34999999998888888887 766555444333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=5.9e-13  Score=117.17  Aligned_cols=173  Identities=13%  Similarity=0.079  Sum_probs=112.2

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCee--eEEeccccCCeeEEEEc
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s  168 (297)
                      .+..|++ |.. |...+.+. .|...+..++|||||+.|+..+.+   ..|++||+.+++.  +..+.+|   ...++|+
T Consensus       182 ~~~~i~i~d~d-g~~~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS  256 (429)
T PRK01742        182 QPYEVRVADYD-GFNQFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS  256 (429)
T ss_pred             ceEEEEEECCC-CCCceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC
Confidence            3567888 654 44455566 788889999999999999887654   3699999988753  3334333   4468999


Q ss_pred             cCCCEEEEEe-CCCcEEEE--EcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         169 ISGEQIVSIA-KDGKAFVW--NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       169 p~~~~l~s~~-~d~~v~lw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      |||+.|+.++ .++.+.||  |+.++.. ..+..+..          ......|+|||+.|+..+.       .++...+
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~----------~~~~~~wSpDG~~i~f~s~-------~~g~~~I  318 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAG----------NNTEPSWSPDGQSILFTSD-------RSGSPQV  318 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCC----------CcCCEEECCCCCEEEEEEC-------CCCCceE
Confidence            9999888764 67765555  6655543 33332211          1223678999998877543       3455666


Q ss_pred             EeCCC-CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         246 WDVDS-GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       246 wd~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |++.. +.....+ .+.. ..+.|+|||++|+..+. ++ +.+||+.+++
T Consensus       319 ~~~~~~~~~~~~l-~~~~-~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~g~  364 (429)
T PRK01742        319 YRMSASGGGASLV-GGRG-YSAQISADGKTLVMING-DN-VVKQDLTSGS  364 (429)
T ss_pred             EEEECCCCCeEEe-cCCC-CCccCCCCCCEEEEEcC-CC-EEEEECCCCC
Confidence            65543 2222233 2222 45678999998888776 54 5558887764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.54  E-value=5.8e-12  Score=107.88  Aligned_cols=192  Identities=13%  Similarity=0.101  Sum_probs=130.8

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ....++.|.+ |..+.+.+..+. .....-..+.|+|||+++++++.|+.|.++|+.+++.+.+++... ...++++++|
T Consensus        11 ~~~~~~~v~viD~~t~~~~~~i~-~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~D   88 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNKVVARIP-TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPD   88 (369)
T ss_dssp             EEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--T
T ss_pred             EecCCCEEEEEECCCCeEEEEEc-CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCC
Confidence            4566789999 999999999997 333333457899999999999999999999999999998887543 5788999999


Q ss_pred             CCEEEEEe-CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCCCeEEEEeC
Q psy3337         171 GEQIVSIA-KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       171 ~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |++++++. .++.+.++|.++.+.++.+.........   ...++..+..+|... ++++...        .+.|.+.|.
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd--------~~~I~vVdy  157 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKD--------TGEIWVVDY  157 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETT--------TTEEEEEET
T ss_pred             CCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEcc--------CCeEEEEEe
Confidence            99998776 5899999999999988887543200000   112333455567666 4555443        688989998


Q ss_pred             CCCceE--EEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLR--LAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~--~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ...+.+  ..+..........|+|++++++++...+..|-++|..+++.+
T Consensus       158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence            775433  344444448899999999998776543789999999887653

...

>KOG0642|consensus

Probab=99.53  E-value=1.7e-13  Score=116.44  Aligned_cols=166  Identities=20%  Similarity=0.266  Sum_probs=127.9

Q ss_pred             EEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC--------CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCc
Q psy3337         111 TVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK--------MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK  182 (297)
Q Consensus       111 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~  182 (297)
                      ++. .|.+.|+.+.|.|....|++++.|+++++|+++.        -+++.+|.+|.++|.|++..+++.++++|+.||+
T Consensus       289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            444 7999999999999989999999999999999932        2478899999999999999999999999999999


Q ss_pred             EEEEEcCCC------c----eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc
Q psy3337         183 AFVWNSKNG------S----LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR  252 (297)
Q Consensus       183 v~lwd~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~  252 (297)
                      |++|++...      .    ....+.+|.          ..++.+++|+....|++++.        ||+++.|+.....
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ght----------davw~l~~s~~~~~Llscs~--------DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHT----------DAVWLLALSSTKDRLLSCSS--------DGTVRLWEPTEES  429 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccc----------cceeeeeecccccceeeecC--------CceEEeeccCCcC
Confidence            999976411      1    112222332          23455778888888888766        9999999876432


Q ss_pred             e--------------------------------------------EEEec-----cC---CCeEEEEEcCCCCEEEEEec
Q psy3337         253 L--------------------------------------------RLARE-----MK---ESLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       253 ~--------------------------------------------~~~~~-----~~---~~v~~~~~s~dg~~l~~~~~  280 (297)
                      +                                            +..+.     +.   ..+.-+.++|.+.+.+++.+
T Consensus       430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he  509 (577)
T KOG0642|consen  430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE  509 (577)
T ss_pred             ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence            2                                            00000     00   12567788899999999999


Q ss_pred             CCCeEEEEEeCCceec
Q psy3337         281 FTGSVFVYIAFSLQMC  296 (297)
Q Consensus       281 ~dg~i~vwd~~~~~~~  296 (297)
                       |+.|+++|..+++++
T Consensus       510 -d~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  510 -DRSIRFFDNKTGKIL  524 (577)
T ss_pred             -CCceecccccccccc
Confidence             999999999998865

>KOG4227|consensus

Probab=99.53  E-value=2.6e-13  Score=110.88  Aligned_cols=166  Identities=17%  Similarity=0.220  Sum_probs=127.5

Q ss_pred             EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC------CCeeeEEecc-ccCCeeEEEEccCCCEEEEEeCCCc
Q psy3337         110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP------KMKPLLHIEA-HSKEIDDVDFSISGEQIVSIAKDGK  182 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~------~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~d~~  182 (297)
                      +.+. +|.+.|.++.|+.++++|++|+.|..+++|.+.      +.+++..... |...|.|++|....+++++|..+++
T Consensus        50 KD~~-~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVR-EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhh-hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            3444 899999999999999999999999999999984      4456655543 4578999999999999999999999


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc----eEEEec
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR----LRLARE  258 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~----~~~~~~  258 (297)
                      |.+.|+.+.+.+..+......+        .+..+..+|....+++++.        ++.|.+||.+..+    ++..-.
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~--------~VY~m~~~P~DN~~~~~t~--------~~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRG--------DVYHMDQHPTDNTLIVVTR--------AKLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             eEeeecccceeeeeecccCccc--------ceeecccCCCCceEEEEec--------CceEEEEeccCCCCCCceeeecC
Confidence            9999999888777664332111        2223556888777887555        9999999998744    332223


Q ss_pred             cCCCeEEEEEcCC-CCEEEEEecCCCeEEEEEeCCc
Q psy3337         259 MKESLSALAVRDD-GRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       259 ~~~~v~~~~~s~d-g~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ......++-|+|. ..+|++.+. .+-+.+||.+..
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~-~~G~~~~D~R~~  227 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSE-TGGPNVFDRRMQ  227 (609)
T ss_pred             CCccceeeeecCCCceeEEeccc-cCCCCceeeccc
Confidence            3344889999995 456778888 899999998653

>KOG0290|consensus

Probab=99.52  E-value=2e-12  Score=101.82  Aligned_cols=181  Identities=14%  Similarity=0.186  Sum_probs=129.7

Q ss_pred             CCcCCCCCCCceEEE-EeeCCCe--EEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEe---cccc
Q psy3337          87 PILNSIDSKEKNLRF-GFKTFDS--VQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHI---EAHS  159 (297)
Q Consensus        87 ~~l~~~~~~d~~i~~-~~~~~~~--~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~  159 (297)
                      |-+-.+.+-|-+..+ +++++..  +++-...|...|..++|...+ +.||+.+.||.|++||++..+.-..+   ....
T Consensus       163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~  242 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS  242 (364)
T ss_pred             cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence            344457778889999 8988743  333333999999999999976 78999999999999999876543222   2224


Q ss_pred             CCeeEEEEcc-CCCEEEEEeCC-CcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCccc
Q psy3337         160 KEIDDVDFSI-SGEQIVSIAKD-GKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQ  235 (297)
Q Consensus       160 ~~v~~~~~sp-~~~~l~s~~~d-~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~  235 (297)
                      .+...++|++ |-+++|+-..| ..|.+.|++. ..++..+..|..          .++.++|.|... .|.+       
T Consensus       243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a----------~VNgIaWaPhS~~hict-------  305 (364)
T KOG0290|consen  243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA----------SVNGIAWAPHSSSHICT-------  305 (364)
T ss_pred             CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc----------cccceEecCCCCceeee-------
Confidence            5788899988 55677776655 5699999984 467788888762          244588888754 4555       


Q ss_pred             ccCCCCeEEEEeCCCC------ceEEEeccCCCeEEEEEcC-CCCEEEEEecCCCeEEE
Q psy3337         236 NKRGISYVQQWDVDSG------RLRLAREMKESLSALAVRD-DGRFVAVGTMFTGSVFV  287 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~------~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~~dg~i~v  287 (297)
                       +++|....+||+.+.      .++..+.....|..+.|++ .+.+|+.+.  +..+.+
T Consensus       306 -aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~--~kklei  361 (364)
T KOG0290|consen  306 -AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF--GKKLEI  361 (364)
T ss_pred             -cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe--cCeeeE
Confidence             445999999999862      1233344445599999996 567888877  444444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=6.8e-12  Score=110.30  Aligned_cols=179  Identities=13%  Similarity=0.113  Sum_probs=117.2

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc---CCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG---TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      .|.+ |..... .+.+. .+...+...+|||||+.|+..+   .+..|++||+.+++... +......+..+.|+|||+.
T Consensus       180 ~l~~~d~dg~~-~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYN-QFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCC-CEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence            5777 655443 34444 5667889999999999888654   34579999998876432 2223334557899999998


Q ss_pred             EEEE-eCCC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         174 IVSI-AKDG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       174 l~s~-~~d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      |+.. +.++  .|++||+.+++.......+.           ......|+|||+.|+..+.     ......|+++|+.+
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-----------~~~~~~wSPDG~~I~f~s~-----~~g~~~Iy~~d~~~  320 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRS-----------NNTEPTWFPDSQNLAYTSD-----QAGRPQVYKVNING  320 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCCCC-----------CcCceEECCCCCEEEEEeC-----CCCCceEEEEECCC
Confidence            8765 4444  58899998776543322211           1123678999998887654     11123667778877


Q ss_pred             CceEEEeccCCCeEEEEEcCCCCEEEEEecCC--CeEEEEEeCCcee
Q psy3337         251 GRLRLAREMKESLSALAVRDDGRFVAVGTMFT--GSVFVYIAFSLQM  295 (297)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d--g~i~vwd~~~~~~  295 (297)
                      ++.............+.|+|||++|+..+..+  ..|.+||+.+++.
T Consensus       321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            65543322222367889999999998766412  3588899887653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.8e-12  Score=111.96  Aligned_cols=179  Identities=11%  Similarity=0.130  Sum_probs=115.8

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|.+ |. .|...+.+. .+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+....|+|||+
T Consensus       176 ~~L~~~D~-dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDA-DGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECC-CCCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence            45666 54 444445555 677788999999999998877643   359999998886543 333445567899999999


Q ss_pred             EEE-EEeCCCcEEEEE--cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIV-SIAKDGKAFVWN--SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~-s~~~d~~v~lwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|+ +.+.++...||.  +..+. +..+..+...          .....|+|||+.|+..+.     ......|+++++.
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~----------~~~~~wSpDG~~l~f~s~-----~~g~~~Iy~~~~~  316 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGI----------DTEPFFSPDGRSIYFTSD-----RGGAPQIYRMPAS  316 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-cEECCCCCCC----------CcCeEEcCCCCEEEEEec-----CCCCcEEEEEECC
Confidence            886 456777766665  44443 3333322110          112568999999887653     1122345555655


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC---eEEEEEeCCcee
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG---SVFVYIAFSLQM  295 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg---~i~vwd~~~~~~  295 (297)
                      +++..............+|||||++|+..+. ++   .|.+||+.+++.
T Consensus       317 ~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~-~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        317 GGAAQRVTFTGSYNTSPRISPDGKLLAYISR-VGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CCceEEEecCCCCcCceEECCCCCEEEEEEc-cCCcEEEEEEECCCCCe
Confidence            5544333222222556899999999988776 44   699999987653

>KOG1523|consensus

Probab=99.52  E-value=1.1e-12  Score=104.53  Aligned_cols=158  Identities=16%  Similarity=0.245  Sum_probs=123.0

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC---eeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM---KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-  191 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-  191 (297)
                      -..+|+|.+|++|+..+|.+-....|.||.....   +...+++.|...|+.++|+|..+.|++++.|..-++|....+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            4568999999999999999999999999987643   578899999999999999999999999999999999998433 


Q ss_pred             ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE---EEe--ccCCCeEEE
Q psy3337         192 SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR---LAR--EMKESLSAL  266 (297)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~---~~~--~~~~~v~~~  266 (297)
                      .-..++..-.        .......+.|+|.+..+++        |+.-..|.||-++...--   ..+  .....|.++
T Consensus        89 ~WkptlvLlR--------iNrAAt~V~WsP~enkFAV--------gSgar~isVcy~E~ENdWWVsKhikkPirStv~sl  152 (361)
T KOG1523|consen   89 TWKPTLVLLR--------INRAATCVKWSPKENKFAV--------GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL  152 (361)
T ss_pred             eeccceeEEE--------eccceeeEeecCcCceEEe--------ccCccEEEEEEEecccceehhhhhCCccccceeee
Confidence            3222221110        0112234889999999998        666889999988753322   111  112339999


Q ss_pred             EEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         267 AVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       267 ~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +|+|++-+|++|+. |+..+||..
T Consensus       153 dWhpnnVLlaaGs~-D~k~rVfSa  175 (361)
T KOG1523|consen  153 DWHPNNVLLAAGST-DGKCRVFSA  175 (361)
T ss_pred             eccCCcceeccccc-CcceeEEEE
Confidence            99999999999999 999999975

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.51  E-value=1e-11  Score=107.87  Aligned_cols=183  Identities=20%  Similarity=0.360  Sum_probs=141.1

Q ss_pred             CCCCCceEEE-EeeCCC-eEEEEecCCC-CcEEEEEE-ecCCC-EEEEEcC-CCcEEEEeCCC-CeeeEEeccccCCeeE
Q psy3337          92 IDSKEKNLRF-GFKTFD-SVQTVFAGSE-SLQRVVRL-SRNGD-LMVTGGT-DGHLRLWSFPK-MKPLLHIEAHSKEIDD  164 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~-~~~~~~~~h~-~~v~~~~~-s~~g~-~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~  164 (297)
                      .++.|+.+.+ +...+. .+..+. ++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|..
T Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  160 (466)
T COG2319          82 SGSSDGTIKLWDLDNGEKLIKSLE-GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS  160 (466)
T ss_pred             EecCCCcEEEEEcCCCceeEEEEe-ccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEE
Confidence            3447888888 666665 566665 433 36777777 88887 5555444 99999999987 7788889999999999


Q ss_pred             EEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCCCe
Q psy3337         165 VDFSISGEQIVSIAK-DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGISY  242 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d~~  242 (297)
                      ++|+|++..+++++. |+.+++|++..+..+..+..|..          .+..++|+|++. .+++        ++.|+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~--------~~~d~~  222 (466)
T COG2319         161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD----------PVSSLAFSPDGGLLIAS--------GSSDGT  222 (466)
T ss_pred             EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC----------ceEEEEEcCCcceEEEE--------ecCCCc
Confidence            999999998888885 99999999988777777766532          233467788887 4433        345999


Q ss_pred             EEEEeCCCCceEE-EeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         243 VQQWDVDSGRLRL-AREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       243 i~~wd~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |++||...+.... .+..|....-..|+|++.++++++. |+.+++|++....
T Consensus       223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~  274 (466)
T COG2319         223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS-DGTIRLWDLRSSS  274 (466)
T ss_pred             EEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecC-CCcEEEeeecCCC
Confidence            9999999888877 6777766323379999988999999 9999999998654

>KOG1517|consensus

Probab=99.51  E-value=1.5e-12  Score=118.30  Aligned_cols=187  Identities=14%  Similarity=0.205  Sum_probs=136.9

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCC---eeeEEeccccCC--eeE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKM---KPLLHIEAHSKE--IDD  164 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~--v~~  164 (297)
                      .+++-..|+| |......+..+..+....|+++.-+. .|+.+++|-.||.|++||.+..   ..+..++.|+..  |..
T Consensus      1182 ~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             ecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence            4445778999 88888888887756666777776554 4699999999999999998743   356788889887  999


Q ss_pred             EEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         165 VDFSISGE-QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       165 ~~~sp~~~-~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +.+.+.|- .|++|+.||.|++||++.......+....+    ..+ ......+..+++...+++        |+. +.|
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~----~~y-Gs~lTal~VH~hapiiAs--------Gs~-q~i 1327 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH----WEY-GSALTALTVHEHAPIIAS--------GSA-QLI 1327 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCcccccceeeec----ccc-CccceeeeeccCCCeeee--------cCc-ceE
Confidence            99988665 499999999999999986422222221110    000 012345667888888877        555 899


Q ss_pred             EEEeCCCCceEEEecc------C--CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         244 QQWDVDSGRLRLAREM------K--ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~------~--~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      .||++.. +.+..+..      .  ..+.|++|+|-.-.|++|.. |.+|.||.....+
T Consensus      1328 kIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~-Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA-DSTVSIYSCEKPR 1384 (1387)
T ss_pred             EEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccC-CceEEEeecCCcC
Confidence            9999984 33333322      1  22899999999999999999 9999999887654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.50  E-value=8.3e-12  Score=106.34  Aligned_cols=179  Identities=8%  Similarity=0.030  Sum_probs=121.1

Q ss_pred             CCCCCceEEE-EeeC-CC--eEEEEecCCCCcEEEEEEecCCCEEEEE-cCCCcEEEEeCC-CCee--eEEeccccCCee
Q psy3337          92 IDSKEKNLRF-GFKT-FD--SVQTVFAGSESLQRVVRLSRNGDLMVTG-GTDGHLRLWSFP-KMKP--LLHIEAHSKEID  163 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~-~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~-~~~~--~~~~~~~~~~v~  163 (297)
                      +...++.|.+ ++.+ ++  .++.+.  +.+....++++|++++|+++ ..++.|.+|++. +++.  +.... ......
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~   83 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT   83 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence            3456788998 8754 33  334443  33456689999999988765 458889999986 3332  22222 233567


Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEEcCC-Cce---eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         164 DVDFSISGEQIVSIAK-DGKAFVWNSKN-GSL---SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~-d~~v~lwd~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      .++|+|++++|++++. ++.|.+|++.+ +..   +..+....           ....++++|++++++++..       
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~p~g~~l~v~~~-------  145 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE-----------GCHSANIDPDNRTLWVPCL-------  145 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC-----------cccEeEeCCCCCEEEEeeC-------
Confidence            8999999999888764 78999999963 322   22111110           0112567999999987543       


Q ss_pred             CCCeEEEEeCCC-CceE------EEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         239 GISYVQQWDVDS-GRLR------LAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       239 ~d~~i~~wd~~~-~~~~------~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .++.|.+||+.+ +.+.      ...........++|+|||++|+++...++.|.+|++.
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            478999999986 3321      1122233378899999999998887658999999997

>KOG2394|consensus

Probab=99.50  E-value=3.7e-13  Score=113.93  Aligned_cols=160  Identities=14%  Similarity=0.179  Sum_probs=115.3

Q ss_pred             cCCCEEEEEcCCCcEEEEeCCCCeeeEEe----ccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCC-----------
Q psy3337         127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHI----EAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKN-----------  190 (297)
Q Consensus       127 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~-----------  190 (297)
                      |.+--|+.|-..|.|.+.|....+..+.+    .-....|+++.|-| +...|+.+-.+|.+++||..-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            45556777888888988887552211111    11346899999998 455677778899999997631           


Q ss_pred             ---Cceeeeee--cc---CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-C
Q psy3337         191 ---GSLSKELK--WN---TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-E  261 (297)
Q Consensus       191 ---~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~  261 (297)
                         +.......  .+   .|.. .+.+....++.++|+|||++|++++.        ||.++|||+.+.+++..+..- .
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~-~w~~~~g~in~f~FS~DG~~LA~VSq--------DGfLRvF~fdt~eLlg~mkSYFG  333 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVA-RWHIGEGSINEFAFSPDGKYLATVSQ--------DGFLRIFDFDTQELLGVMKSYFG  333 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccc-eeEeccccccceeEcCCCceEEEEec--------CceEEEeeccHHHHHHHHHhhcc
Confidence               11111111  11   1222 45555666778999999999999887        999999999998877666543 4


Q ss_pred             CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         262 SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       262 ~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ...|++|||||+||++|++ |.-|.||.+...+.+
T Consensus       334 GLLCvcWSPDGKyIvtGGE-DDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGE-DDLVTVWSFEERRVV  367 (636)
T ss_pred             ceEEEEEcCCccEEEecCC-cceEEEEEeccceEE
Confidence            4999999999999999999 999999999877654

>KOG1310|consensus

Probab=99.50  E-value=3.4e-13  Score=114.50  Aligned_cols=198  Identities=12%  Similarity=0.153  Sum_probs=140.2

Q ss_pred             cCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCC----------CeeeEEe
Q psy3337          89 LNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPK----------MKPLLHI  155 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~----------~~~~~~~  155 (297)
                      |..+|++|-.+.| |+-..+.+..+..||.+.|.++.|-|  +.+.+++|..|..|+++|+..          .+....+
T Consensus        64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~  143 (758)
T KOG1310|consen   64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW  143 (758)
T ss_pred             EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh
Confidence            4568999999999 78888888888889999999999999  457899999999999999974          2345677


Q ss_pred             ccccCCeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCcee-eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         156 EAHSKEIDDVDFSISG-EQIVSIAKDGKAFVWNSKNGSLS-KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~-~~l~s~~~d~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      .+|...|..++-.|++ +.|.+++.||+++-+|++..... .....+. .-..+........++..+|...+++.+    
T Consensus       144 ~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~-~l~ny~~~lielk~ltisp~rp~~laV----  218 (758)
T KOG1310|consen  144 SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS-ILVNYNPQLIELKCLTISPSRPYYLAV----  218 (758)
T ss_pred             hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH-HHHHhchhhheeeeeeecCCCCceEEe----
Confidence            8899999999999988 78999999999999999853211 1111110 000000011123346778887666554    


Q ss_pred             ccccCCCCeEEEEeCCC--------Cc----------eEEEec-cC------------CCeEEEEEcCCCCEEEEEecCC
Q psy3337         234 AQNKRGISYVQQWDVDS--------GR----------LRLARE-MK------------ESLSALAVRDDGRFVAVGTMFT  282 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~--------~~----------~~~~~~-~~------------~~v~~~~~s~dg~~l~~~~~~d  282 (297)
                         |..+...++||.+.        +.          ++..+. +|            ..++-++|+|+|.-|++.-. .
T Consensus       219 ---GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~-g  294 (758)
T KOG1310|consen  219 ---GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG-G  294 (758)
T ss_pred             ---cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC-C
Confidence               55688999999431        11          122221 11            11467789999998877776 7


Q ss_pred             CeEEEEEeCCcee
Q psy3337         283 GSVFVYIAFSLQM  295 (297)
Q Consensus       283 g~i~vwd~~~~~~  295 (297)
                      ..|++||+...+.
T Consensus       295 EhVYlfdvn~~~~  307 (758)
T KOG1310|consen  295 EHVYLFDVNEDKS  307 (758)
T ss_pred             eEEEEEeecCCCC
Confidence            7999999987653

>KOG2139|consensus

Probab=99.50  E-value=2.7e-12  Score=104.00  Aligned_cols=177  Identities=14%  Similarity=0.215  Sum_probs=125.3

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCC-C---ee----------eEE
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPK-M---KP----------LLH  154 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~-~---~~----------~~~  154 (297)
                      ..+..|.+|++ +... +....+.......|+|++|-|.+ ..|+.|...| |.||.... +   ..          +..
T Consensus       114 ava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~  191 (445)
T KOG2139|consen  114 AVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQ  191 (445)
T ss_pred             hhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhee
Confidence            36778889999 5444 55555543445579999999965 6677776654 88997631 1   11          122


Q ss_pred             eccccCCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAK-DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      ..+| ..|+++.|++||..+++++. |..|.|||+.++..+.-. ...         ...+..+.||||+.+|+++..  
T Consensus       192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~g---------lgg~slLkwSPdgd~lfaAt~--  258 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKG---------LGGFSLLKWSPDGDVLFAATC--  258 (445)
T ss_pred             CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccC---------CCceeeEEEcCCCCEEEEecc--
Confidence            3345 57999999999999999885 678999999988765332 111         123445789999999999776  


Q ss_pred             ccccCCCCeEEEEeC-CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         234 AQNKRGISYVQQWDV-DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                            |+..++|.. ++....+-.-+.+.|...+|+|+|++|+....  |.-++|.+
T Consensus       259 ------davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~lysl  308 (445)
T KOG2139|consen  259 ------DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLYSL  308 (445)
T ss_pred             ------cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEEEE
Confidence                  999999954 44555555555557999999999999887763  55555554

>KOG0650|consensus

Probab=99.49  E-value=1.2e-12  Score=112.17  Aligned_cols=155  Identities=17%  Similarity=0.169  Sum_probs=126.5

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~  191 (297)
                      .|...|..+.|+..|.+|++...+   ..|.|+++........|+...+.|.++.|+|...+|++++. ..|++||+...
T Consensus       519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq  597 (733)
T KOG0650|consen  519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ  597 (733)
T ss_pred             ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH
Confidence            789999999999999999987654   46889998776666667666778999999999888888765 47999999876


Q ss_pred             ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC-eEEEEEc
Q psy3337         192 SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES-LSALAVR  269 (297)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~~~s  269 (297)
                      ..+..+...          +-.+..++.+|.|..|+.        |+.|+.+..+|+.- .++..++..|.. +++++|+
T Consensus       598 elvKkL~tg----------~kwiS~msihp~GDnli~--------gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H  659 (733)
T KOG0650|consen  598 ELVKKLLTG----------SKWISSMSIHPNGDNLIL--------GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH  659 (733)
T ss_pred             HHHHHHhcC----------CeeeeeeeecCCCCeEEE--------ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc
Confidence            666655422          112335788999999998        55599999999986 467788888887 9999999


Q ss_pred             CCCCEEEEEecCCCeEEEEE
Q psy3337         270 DDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i~vwd  289 (297)
                      +.=.++++|+. ||++.||-
T Consensus       660 ~ryPLfas~sd-Dgtv~Vfh  678 (733)
T KOG0650|consen  660 KRYPLFASGSD-DGTVIVFH  678 (733)
T ss_pred             cccceeeeecC-CCcEEEEe
Confidence            99899999999 99999885

>KOG1538|consensus

Probab=99.49  E-value=1.4e-13  Score=119.42  Aligned_cols=148  Identities=14%  Similarity=0.252  Sum_probs=116.0

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK  198 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~  198 (297)
                      .|..++|-|||..|+.+. +..+.+||...|..+.++++|.+.|++++|+.||..|++|+.|..|.+|...-... ..+.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eeec
Confidence            688999999998888774 44799999999999999999999999999999999999999999999998642211 1111


Q ss_pred             ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEE
Q psy3337         199 WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVG  278 (297)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  278 (297)
                       |.          ..+.++.|+|-...|++++.         ...-+|...... +........+.+.+|..||++|+.|
T Consensus        92 -H~----------D~IQCMsFNP~~h~LasCsL---------sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG  150 (1081)
T KOG1538|consen   92 -HN----------DAIQCMSFNPITHQLASCSL---------SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALG  150 (1081)
T ss_pred             -cC----------CeeeEeecCchHHHhhhcch---------hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEe
Confidence             21          12345778999999998765         456678776422 2222333448899999999999999


Q ss_pred             ecCCCeEEEEEe
Q psy3337         279 TMFTGSVFVYIA  290 (297)
Q Consensus       279 ~~~dg~i~vwd~  290 (297)
                      .. +|+|.+-+-
T Consensus       151 ~~-nGTIsiRNk  161 (1081)
T KOG1538|consen  151 MF-NGTISIRNK  161 (1081)
T ss_pred             cc-CceEEeecC
Confidence            99 999998754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.1e-11  Score=108.94  Aligned_cols=176  Identities=10%  Similarity=0.143  Sum_probs=114.0

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEE-cCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG-GTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      +..+++ ++.+++.....  .....+..+.|+|||+.|+.. +.++  .|++||+.+++.. .+..+...+....|+|||
T Consensus       222 ~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG  298 (429)
T PRK03629        222 RSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS  298 (429)
T ss_pred             CcEEEEEECCCCCeEEcc--CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCC
Confidence            345666 77666543322  223334578999999988754 4444  5899999887654 344445567899999999


Q ss_pred             CEEEEEeCC-Cc--EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         172 EQIVSIAKD-GK--AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       172 ~~l~s~~~d-~~--v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +.|+..+.+ +.  |+++|+.++.. ..+.....          ......|+|||++|+....     ......|.+||+
T Consensus       299 ~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~----------~~~~~~~SpDG~~Ia~~~~-----~~g~~~I~~~dl  362 (429)
T PRK03629        299 QNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS----------QNQDADVSSDGKFMVMVSS-----NGGQQHIAKQDL  362 (429)
T ss_pred             CEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC----------CccCEEECCCCCEEEEEEc-----cCCCceEEEEEC
Confidence            988776653 44  44556665543 23322210          1123668999999988654     223457999999


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCe---EEEEEeCC
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGS---VFVYIAFS  292 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~---i~vwd~~~  292 (297)
                      .+++... +..........|+|||++|+.++. ++.   +.++++..
T Consensus       363 ~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~-~~~~~~l~~~~~~G  407 (429)
T PRK03629        363 ATGGVQV-LTDTFLDETPSIAPNGTMVIYSSS-QGMGSVLNLVSTDG  407 (429)
T ss_pred             CCCCeEE-eCCCCCCCCceECCCCCEEEEEEc-CCCceEEEEEECCC
Confidence            8876543 332223557889999999999887 654   67777643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=4.4e-12  Score=111.66  Aligned_cols=167  Identities=12%  Similarity=0.103  Sum_probs=112.3

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc-CCCcEEEE--eCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG-TDGHLRLW--SFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|++ ++.+++.....  ...+....++|+|||+.|+.++ .++.+.||  |+.+++ ...+..+...+..+.|+|||+
T Consensus       228 ~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~  304 (429)
T PRK01742        228 SQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQ  304 (429)
T ss_pred             cEEEEEeCCCCceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCC
Confidence            46777 77776543222  1222234789999999888764 67765555  665555 455666777788999999999


Q ss_pred             EEEEEe-CCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         173 QIVSIA-KDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       173 ~l~s~~-~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      .|+..+ .++...||++... .....+ .+.    .        ....|+|+|+.|+..+.        + .+.+||+.+
T Consensus       305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~----~--------~~~~~SpDG~~ia~~~~--------~-~i~~~Dl~~  362 (429)
T PRK01742        305 SILFTSDRSGSPQVYRMSASGGGASLV-GGR----G--------YSAQISADGKTLVMING--------D-NVVKQDLTS  362 (429)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeEEe-cCC----C--------CCccCCCCCCEEEEEcC--------C-CEEEEECCC
Confidence            877554 5788888876532 222222 111    1        12568999999988543        4 466799998


Q ss_pred             CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         251 GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      ++....... ....++.|+|||++|+.++. ++.+.+|++
T Consensus       363 g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~~~~l~~  400 (429)
T PRK01742        363 GSTEVLSST-FLDESPSISPNGIMIIYSST-QGLGKVLQL  400 (429)
T ss_pred             CCeEEecCC-CCCCCceECCCCCEEEEEEc-CCCceEEEE
Confidence            876543322 23467889999999999998 998888875

>KOG2111|consensus

Probab=99.48  E-value=8.5e-11  Score=93.87  Aligned_cols=171  Identities=13%  Similarity=0.172  Sum_probs=121.6

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC-CCeeeEEecc--ccCCeeEEEEccCCCE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP-KMKPLLHIEA--HSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~-~~~~~~~~~~--~~~~v~~~~~sp~~~~  173 (297)
                      .+.| |-....++.++  ....+|.++.++++  .|+.. ..+.|++|.+. +.+.++.+..  ....+.+++-..+..+
T Consensus        76 kviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             eEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            5666 65555666666  56788999999877  45554 56789999987 5555555432  2233444443334445


Q ss_pred             EEEEe-CCCcEEEEEcCCCce--eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC-eEEEEeCC
Q psy3337         174 IVSIA-KDGKAFVWNSKNGSL--SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-YVQQWDVD  249 (297)
Q Consensus       174 l~s~~-~d~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~-~i~~wd~~  249 (297)
                      ||.-+ .-|.|.|-|+...+.  ...+..|.          ..+..++.+-+|..+++++.        .| -|+|||..
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~----------s~Iacv~Ln~~Gt~vATaSt--------kGTLIRIFdt~  212 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHD----------SDIACVALNLQGTLVATAST--------KGTLIRIFDTE  212 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEccc----------CceeEEEEcCCccEEEEecc--------CcEEEEEEEcC
Confidence            55433 458999999875444  34445554          23445788999999999654        55 58999999


Q ss_pred             CCceEEEeccC---CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         250 SGRLRLAREMK---ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       250 ~~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +|+.+..+...   ..|.+++||||..+|++++. .|+|+||.++.
T Consensus       213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd-KgTlHiF~l~~  257 (346)
T KOG2111|consen  213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD-KGTLHIFSLRD  257 (346)
T ss_pred             CCcEeeeeecCCchheEEEEEeCCCccEEEEEcC-CCeEEEEEeec
Confidence            99999888653   23999999999999999999 99999999865

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=2.6e-11  Score=106.73  Aligned_cols=179  Identities=15%  Similarity=0.117  Sum_probs=121.7

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      ...|.+ +.. +...+.+. .+...+...+|+|||++|+.+..+   ..|++||+.+++... +..+...+.+++|+||+
T Consensus       169 ~~~l~~~d~~-g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       169 RYELQVADYD-GANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG  245 (417)
T ss_pred             cceEEEEcCC-CCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence            345666 654 33345555 666778899999999999877644   479999998876433 33455567789999999


Q ss_pred             CEEEE-EeCCC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         172 EQIVS-IAKDG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       172 ~~l~s-~~~d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +.|+. .+.++  .|++||+.++.... +..+...          .....|+|+++.|+..+.     ......|+++|+
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~----------~~~~~~s~dg~~l~~~s~-----~~g~~~iy~~d~  309 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGI----------DTEPSWSPDGKSIAFTSD-----RGGSPQIYMMDA  309 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCC----------CCCEEECCCCCEEEEEEC-----CCCCceEEEEEC
Confidence            87764 44444  58889988765432 2222110          112458999998887654     222347899999


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC---eEEEEEeCCce
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG---SVFVYIAFSLQ  294 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg---~i~vwd~~~~~  294 (297)
                      .+++..........+..+.|+|+|++|+.+.. ++   .|.+||+.++.
T Consensus       310 ~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~-~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       310 DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CCCCEEEeecCCCCccCeEECCCCCEEEEEEc-cCCceEEEEEeCCCCC
Confidence            87765443333334788899999999998887 65   78999987653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1272|consensus

Probab=99.47  E-value=6.8e-14  Score=116.38  Aligned_cols=171  Identities=13%  Similarity=0.159  Sum_probs=133.1

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCC
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG  181 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~  181 (297)
                      |..++.....+.  -...|..+.|-.+.+++|++ ....++||| ..|..+..++.|. .|..+.|-|..-+|++++..|
T Consensus       157 Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G  231 (545)
T KOG1272|consen  157 DWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAG  231 (545)
T ss_pred             ecccceeeeeee--hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhcC-chhhhcccchhheeeecccCC
Confidence            555555555542  34456777787777777776 677899999 6678888888665 699999999988899999999


Q ss_pred             cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC
Q psy3337         182 KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE  261 (297)
Q Consensus       182 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~  261 (297)
                      .++--|+.+|+.+..+....          .+...++-+|-.-.+-+        |...|+|.+|...+.+++..+-.|.
T Consensus       232 ~L~Y~DVS~GklVa~~~t~~----------G~~~vm~qNP~NaVih~--------GhsnGtVSlWSP~skePLvKiLcH~  293 (545)
T KOG1272|consen  232 FLKYQDVSTGKLVASIRTGA----------GRTDVMKQNPYNAVIHL--------GHSNGTVSLWSPNSKEPLVKILCHR  293 (545)
T ss_pred             ceEEEeechhhhhHHHHccC----------CccchhhcCCccceEEE--------cCCCceEEecCCCCcchHHHHHhcC
Confidence            99999999999887775332          11222445666655554        6679999999999988887777776


Q ss_pred             C-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         262 S-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       262 ~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      . |.++++.++|+|+++.+. |..++|||++....+
T Consensus       294 g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNFYQL  328 (545)
T ss_pred             CCcceEEECCCCcEEeeccc-ccceeEeeecccccc
Confidence            6 999999999999999999 999999999887643

>KOG2321|consensus

Probab=99.46  E-value=2.3e-12  Score=110.07  Aligned_cols=184  Identities=11%  Similarity=0.196  Sum_probs=143.3

Q ss_pred             CCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec------cccC---
Q psy3337          90 NSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE------AHSK---  160 (297)
Q Consensus        90 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~---  160 (297)
                      ...++.....+++++.|+.+..+. -..+.+++|..++...+|++|+.+|.|..||.+....+..+.      .|.+   
T Consensus       149 y~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  149 YLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             EEeecCcceEEEEccccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            335666666777999999998887 666889999999999999999999999999998776555443      2333   


Q ss_pred             --CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC--CeEEEEeccCcccc
Q psy3337         161 --EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK--RSRLFTLANPLAQN  236 (297)
Q Consensus       161 --~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~~~~~~  236 (297)
                        .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. |...        ..+..+.|.+.  +..|+++.      
T Consensus       228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~e--------~pi~~l~~~~~~~q~~v~S~D------  292 (703)
T KOG2321|consen  228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGYE--------LPIKKLDWQDTDQQNKVVSMD------  292 (703)
T ss_pred             cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCCc--------cceeeecccccCCCceEEecc------
Confidence              39999999999999999999999999999887765432 3210        11223445444  45566643      


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                         ...++|||-.+|+....+.....+..+|+-|++.+++++.. ++.+..|=+..+
T Consensus       293 ---k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~yyiP~L  345 (703)
T KOG2321|consen  293 ---KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTYYIPSL  345 (703)
T ss_pred             ---hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeEEcccc
Confidence               57899999999999999888777999999999999999998 888776655543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.4e-11  Score=107.29  Aligned_cols=179  Identities=13%  Similarity=0.094  Sum_probs=119.3

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCc--EEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGH--LRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      +..|++ ++.+++.. .+. .+.+.+...+|+|||+.|+ +.+.++.  |++||+.+++. ..+..+........|+|||
T Consensus       225 ~~~i~~~dl~~g~~~-~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG  301 (435)
T PRK05137        225 RPRVYLLDLETGQRE-LVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG  301 (435)
T ss_pred             CCEEEEEECCCCcEE-Eee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC
Confidence            456777 77777653 333 5666777899999998775 5555554  77889887664 4566566667789999999


Q ss_pred             CEEEEEeC-CC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         172 EQIVSIAK-DG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       172 ~~l~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +.|+..+. ++  .|++||+..+.. ..+....          .......|+|+|+.|+....     ......|.+||+
T Consensus       302 ~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~----------~~~~~~~~SpdG~~ia~~~~-----~~~~~~i~~~d~  365 (435)
T PRK05137        302 SQIVFESDRSGSPQLYVMNADGSNP-RRISFGG----------GRYSTPVWSPRGDLIAFTKQ-----GGGQFSIGVMKP  365 (435)
T ss_pred             CEEEEEECCCCCCeEEEEECCCCCe-EEeecCC----------CcccCeEECCCCCEEEEEEc-----CCCceEEEEEEC
Confidence            98887663 33  588888765543 3332211          11223568999999988654     333457999998


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC-----CeEEEEEeCCce
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT-----GSVFVYIAFSLQ  294 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d-----g~i~vwd~~~~~  294 (297)
                      .++.. ..+.....+..+.|+|||+.|+..+...     ..++++|+..++
T Consensus       366 ~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        366 DGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             CCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            65543 3343323477899999999987765412     257888876543

>KOG1524|consensus

Probab=99.45  E-value=2.4e-12  Score=109.16  Aligned_cols=161  Identities=18%  Similarity=0.205  Sum_probs=121.4

Q ss_pred             CCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          91 SIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        91 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      .+.++||.|++|.++|-...++. ....+|+|++|.|+.+.++.+- .+.+.|=.+.....+..+++|.+-|.++.|+|.
T Consensus       120 lt~GEDG~iKiWSrsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~  197 (737)
T KOG1524|consen  120 LTAGEDGVIKIWSRSGMLRSTVV-QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ  197 (737)
T ss_pred             eeecCCceEEEEeccchHHHHHh-hcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCcc
Confidence            36788999999999987666665 6778899999999987666653 345666666666667789999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      .+++++|+.|-..++||. -|..+..-..|.     +     .+.+++|+|+.. ++. ..        -++++      
T Consensus       198 s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~e-----y-----~ITSva~npd~~-~~v-~S--------~nt~R------  250 (737)
T KOG1524|consen  198 SNIIASGGEDFRFKIWDA-QGANLFTSAAEE-----Y-----AITSVAFNPEKD-YLL-WS--------YNTAR------  250 (737)
T ss_pred             ccceeecCCceeEEeecc-cCcccccCChhc-----c-----ceeeeeeccccc-eee-ee--------eeeee------
Confidence            999999999999999996 455665554443     1     234588999942 322 11        23444      


Q ss_pred             CceEEEecc--CCCeEEEEEcCCCCEEEEEecCCCeEEE
Q psy3337         251 GRLRLAREM--KESLSALAVRDDGRFVAVGTMFTGSVFV  287 (297)
Q Consensus       251 ~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~~dg~i~v  287 (297)
                            +..  -+.|..++||+||..+++|+. .|.+.+
T Consensus       251 ------~~~p~~GSifnlsWS~DGTQ~a~gt~-~G~v~~  282 (737)
T KOG1524|consen  251 ------FSSPRVGSIFNLSWSADGTQATCGTS-TGQLIV  282 (737)
T ss_pred             ------ecCCCccceEEEEEcCCCceeecccc-CceEEE
Confidence                  222  233999999999999999998 887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=5e-11  Score=105.24  Aligned_cols=178  Identities=13%  Similarity=0.093  Sum_probs=118.0

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      .|.+ |...+. .+.+. .+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.
T Consensus       180 ~l~~~d~~g~~-~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCC-ceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence            4555 555443 45555 667788999999999998876543   368999998876433 3333445567999999998


Q ss_pred             EEE-EeCCC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         174 IVS-IAKDG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       174 l~s-~~~d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      |+. ...++  .|++||+.++... .+..+..          ......|+|||+.|+..+.     ......|+++|+.+
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~----------~~~~~~~spDg~~i~f~s~-----~~g~~~iy~~d~~~  320 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPA----------IDTEPFWGKDGRTLYFTSD-----RGGKPQIYKVNVNG  320 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeE-EcccCCC----------CcCCeEECCCCCEEEEEEC-----CCCCceEEEEECCC
Confidence            874 44444  5888899877543 2322210          0112568999998887654     22345788899988


Q ss_pred             CceEEEeccCCCeEEEEEcCCCCEEEEEecCCC--eEEEEEeCCce
Q psy3337         251 GRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--SVFVYIAFSLQ  294 (297)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg--~i~vwd~~~~~  294 (297)
                      ++...............|+|||++|+.....++  .|.+||+.+++
T Consensus       321 g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        321 GRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             CCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            775443322222556789999999987765133  58889988765

>KOG3881|consensus

Probab=99.44  E-value=1.1e-11  Score=101.41  Aligned_cols=159  Identities=12%  Similarity=0.183  Sum_probs=121.9

Q ss_pred             cEEEEEEecCC-CEEEEEcCC--CcEEEEeCCCCeeeEEeccc---------cCCeeEEEEccC--CCEEEEEeCCCcEE
Q psy3337         119 LQRVVRLSRNG-DLMVTGGTD--GHLRLWSFPKMKPLLHIEAH---------SKEIDDVDFSIS--GEQIVSIAKDGKAF  184 (297)
Q Consensus       119 ~v~~~~~s~~g-~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~sp~--~~~l~s~~~d~~v~  184 (297)
                      .+..+.-++.. ..+++|+..  ..+.|||++..+++..-+.-         .-.++++.|-+.  ...|++++.-+.|+
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR  229 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR  229 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence            34555556543 566779988  89999999887665543321         124678889886  78999999999999


Q ss_pred             EEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE-eccCCC
Q psy3337         185 VWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA-REMKES  262 (297)
Q Consensus       185 lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~~~  262 (297)
                      +||.+.+ +++..+...+          ..+..+...|+++.+++        |...+.+..||++.++.... +.+-..
T Consensus       230 ~YDt~~qRRPV~~fd~~E----------~~is~~~l~p~gn~Iy~--------gn~~g~l~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  230 LYDTRHQRRPVAQFDFLE----------NPISSTGLTPSGNFIYT--------GNTKGQLAKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             EecCcccCcceeEecccc----------CcceeeeecCCCcEEEE--------ecccchhheecccCceeeccccCCccC
Confidence            9999855 4556554432          22334667899999999        44589999999999888766 666555


Q ss_pred             -eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         263 -LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       263 -v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       |+++..+|.+++|++++. |..|+|+|+++.+++
T Consensus       292 sirsih~hp~~~~las~GL-DRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  292 SIRSIHCHPTHPVLASCGL-DRYVRIHDIKTRKLL  325 (412)
T ss_pred             CcceEEEcCCCceEEeecc-ceeEEEeecccchhh
Confidence             999999999999999999 999999999986543

>KOG1587|consensus

Probab=99.44  E-value=4.3e-12  Score=112.23  Aligned_cols=189  Identities=15%  Similarity=0.135  Sum_probs=135.4

Q ss_pred             CCCCcCCCCCCCceEEE-EeeCCCe--E---EEEecCCCCcEEEEEEecCC--CEEEEEcCCCcEEEEeCCC--------
Q psy3337          85 DPPILNSIDSKEKNLRF-GFKTFDS--V---QTVFAGSESLQRVVRLSRNG--DLMVTGGTDGHLRLWSFPK--------  148 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~-~~~~~~~--~---~~~~~~h~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~--------  148 (297)
                      ..|-+...|..+|.|.+ |...+..  .   ......|..+++.+.|..+-  .-|++++.||.|..|+++.        
T Consensus       253 ~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~  332 (555)
T KOG1587|consen  253 FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL  332 (555)
T ss_pred             CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhc
Confidence            34455678999999999 7766654  2   22224799999999998754  4499999999999999421        


Q ss_pred             -------------------------------------Ce------------------eeEEeccccCCeeEEEEccCCCE
Q psy3337         149 -------------------------------------MK------------------PLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus       149 -------------------------------------~~------------------~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                                                           |.                  ....+..|.+.|+++.++|-+..
T Consensus       333 ~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k  412 (555)
T KOG1587|consen  333 LLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK  412 (555)
T ss_pred             ccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccc
Confidence                                                 00                  01122346678999999997766


Q ss_pred             EEEEeCCCcEEEEEcC-CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-
Q psy3337         174 IVSIAKDGKAFVWNSK-NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-  251 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-  251 (297)
                      ++..+.|.+++||... ...++..+..+.    .      .+..++|||....++.+       +..+|.|.+||+... 
T Consensus       413 ~fls~gDW~vriWs~~~~~~Pl~~~~~~~----~------~v~~vaWSptrpavF~~-------~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  413 NFLSVGDWTVRIWSEDVIASPLLSLDSSP----D------YVTDVAWSPTRPAVFAT-------VDGDGNLDIWDLLQDD  475 (555)
T ss_pred             eeeeeccceeEeccccCCCCcchhhhhcc----c------eeeeeEEcCcCceEEEE-------EcCCCceehhhhhccc
Confidence            6655569999999876 444555444332    1      24458899998777665       456999999999763 


Q ss_pred             -ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         252 -RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       252 -~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                       .++........ .+.+.|+++|+.|++|.. .|++++|++.
T Consensus       476 ~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~-~G~~~~~~l~  516 (555)
T KOG1587|consen  476 EEPVLSQKVCSPALTRVRWSPNGKLLAVGDA-NGTTHILKLS  516 (555)
T ss_pred             cCCcccccccccccceeecCCCCcEEEEecC-CCcEEEEEcC
Confidence             34444433344 788889999999999999 9999999985

>KOG0974|consensus

Probab=99.43  E-value=4e-12  Score=115.25  Aligned_cols=176  Identities=14%  Similarity=0.154  Sum_probs=132.4

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcE-----EEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEE
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQ-----RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD  166 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v-----~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  166 (297)
                      ...++.+.+ +...+..+..+.  +....     .-+.++++.-++++|+.-+.|.+|+....+.-..+.+|.+.+.++.
T Consensus       105 ~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~  182 (967)
T KOG0974|consen  105 VTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIV  182 (967)
T ss_pred             EEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEE
Confidence            344555666 555555554443  33321     1223455666899999999999999873333336889999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceee-eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNGSLSK-ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      |+-||+++++.+.|.++++|++.+.+... ..-+|          +.+++.+.+.|+  .+++++        +|.++++
T Consensus       183 ~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH----------saRvw~~~~~~n--~i~t~g--------edctcrv  242 (967)
T KOG0974|consen  183 TSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH----------SARVWACCFLPN--RIITVG--------EDCTCRV  242 (967)
T ss_pred             EccCCcEEEEEecCcceeeeecccccccCcccccc----------cceeEEEEeccc--eeEEec--------cceEEEE
Confidence            99999999999999999999999876654 22233          345566778888  788855        4999999


Q ss_pred             EeCCCCceEEEeccCCC--eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         246 WDVDSGRLRLAREMKES--LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      |+.. +..+..+..|..  +..++..++...+++++. |+.+++||+..
T Consensus       243 W~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~-Ds~lk~~~l~~  289 (967)
T KOG0974|consen  243 WGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN-DSTLKLWDLNG  289 (967)
T ss_pred             Eecc-cceehhhhhhhhcceeEEEEcCCceEEEeecc-Ccchhhhhhhc
Confidence            9766 556667777754  999999999999999999 99999999754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=4.7e-11  Score=105.34  Aligned_cols=177  Identities=14%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|++ ++.+++... +. .+.+...+++|+|||+.|+ +.+.++  .|++||+.+++. ..+..+......++|+|||+
T Consensus       228 ~~l~~~dl~~g~~~~-l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~  304 (433)
T PRK04922        228 SAIYVQDLATGQREL-VA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGK  304 (433)
T ss_pred             cEEEEEECCCCCEEE-ec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCC
Confidence            45666 776665433 22 3444455889999998775 445555  599999988764 45555655667899999999


Q ss_pred             EEEEEeC-CCc--EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIVSIAK-DGK--AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~s~~~-d~~--v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|+..+. ++.  |+++|+.+++.. .+....    ..      ...++|+|+|++|+....     ......|.+||+.
T Consensus       305 ~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g----~~------~~~~~~SpDG~~Ia~~~~-----~~~~~~I~v~d~~  368 (433)
T PRK04922        305 SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQG----NY------NARASVSPDGKKIAMVHG-----SGGQYRIAVMDLS  368 (433)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeE-EeecCC----CC------ccCEEECCCCCEEEEEEC-----CCCceeEEEEECC
Confidence            8887663 444  666677665432 222211    00      113678999999988653     2223479999998


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecC--CCeEEEEEeCCc
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMF--TGSVFVYIAFSL  293 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~--dg~i~vwd~~~~  293 (297)
                      +++.. .+........+.|+|||++|+..+..  .+.|.++++...
T Consensus       369 ~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        369 TGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            87765 33332235678999999998877651  235778887543

>KOG1963|consensus

Probab=99.42  E-value=2.7e-11  Score=108.23  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=64.7

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS  188 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~  188 (297)
                      =|...|++++|+++|.+|++|+..+.+.+|.+.+++ .+-+..-..+|..+.++||+.+.+....|..|.+...
T Consensus       249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            577789999999999999999999999999999888 3345556778999999999999999999999998765

>KOG1240|consensus

Probab=99.41  E-value=1.3e-11  Score=113.76  Aligned_cols=181  Identities=15%  Similarity=0.189  Sum_probs=124.9

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCC-------eeeEEeccccCCeeEEEEccCCCE
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKM-------KPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      |-..|..+..+. .|...|..++.++.. .+|++|+.||+|++|+.+..       +...++..-...+..+.+.+.+..
T Consensus      1034 W~p~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCccceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            445677888888 898888888888765 99999999999999998632       123344445678999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCC--ceeeeeeccCCC--CceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         174 IVSIAKDGKAFVWNSKNG--SLSKELKWNTPD--NIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      +|.++.||.|++.++...  .........-+.  .....+....+..   ......++.        +..-+.|..||++
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~---~~~S~~lvy--------~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA---IVQSHVLVY--------ATDLSRIVSWDTR 1181 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc---cccceeEEE--------EEeccceEEecch
Confidence            999999999999998642  111111100000  0011222111111   111123444        3347899999999


Q ss_pred             CCceEEEecc---CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         250 SGRLRLAREM---KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       250 ~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +......++.   |+.|++++.+|.+.++++|+. .|.+.+||++=..+
T Consensus      1182 ~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts-~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS-RGQLVLWDLRFRVP 1229 (1431)
T ss_pred             hhhhHHhhhcCccccceeEEEecCCceEEEEecC-CceEEEEEeecCce
Confidence            8665555443   445999999999999999999 99999999975544

>KOG2321|consensus

Probab=99.39  E-value=1.9e-11  Score=104.56  Aligned_cols=165  Identities=11%  Similarity=0.044  Sum_probs=123.6

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT  201 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~  201 (297)
                      .++++.-.--|..++....|+-++++.|..+..|....+.++++..++...+|++|+.+|.|-.||.+....+..+....
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            55555433335555556679999999999999998888999999999999999999999999999999887777776443


Q ss_pred             CCCc-eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC--eEEEEEcCC--CCEEE
Q psy3337         202 PDNI-KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES--LSALAVRDD--GRFVA  276 (297)
Q Consensus       202 ~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~d--g~~l~  276 (297)
                      .... ...-....+.++.|+.+|-.+++        |+..|.+.|||+++.+++..-.+...  |..+.|.+.  +..|+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aV--------Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~  289 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAV--------GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV  289 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEe--------eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE
Confidence            2100 11112223556889999988888        66799999999999888776655443  999999775  44566


Q ss_pred             EEecCCCeEEEEEeCCceec
Q psy3337         277 VGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +..  ...++|||-.+|+..
T Consensus       290 S~D--k~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  290 SMD--KRILKIWDECTGKPM  307 (703)
T ss_pred             ecc--hHHhhhcccccCCce
Confidence            555  688999999888753

>KOG0322|consensus

Probab=99.39  E-value=2.4e-12  Score=100.07  Aligned_cols=72  Identities=26%  Similarity=0.498  Sum_probs=68.3

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS  188 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~  188 (297)
                      ...|..+..-||++.+|++++|+.|++|..++..++..++-|.+.|.+++|+|+..++|+++.|+.|.+|++
T Consensus       251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            345788999999999999999999999999999999999999999999999999999999999999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.2e-10  Score=102.25  Aligned_cols=182  Identities=13%  Similarity=0.148  Sum_probs=110.9

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC-CC----cEEEEeCCCC---eeeEEeccccCCeeEEEE
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT-DG----HLRLWSFPKM---KPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-d~----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~  167 (297)
                      ..|++ ++.+++..+..  ...+.....+|||||+.|+..+. +|    .+.+|++..+   +.......+.......+|
T Consensus       211 ~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w  288 (428)
T PRK01029        211 PKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF  288 (428)
T ss_pred             ceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE
Confidence            35666 77666543332  23344457899999988876542 22    3344676642   333333333334567899


Q ss_pred             ccCCCEEEEEe-CCCcEEEE--EcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         168 SISGEQIVSIA-KDGKAFVW--NSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       168 sp~~~~l~s~~-~d~~v~lw--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|||+.|+..+ .++...+|  ++.. +.....+....          .......|+|||+.|+.+..     ......|
T Consensus       289 SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~----------~~~~~p~wSPDG~~Laf~~~-----~~g~~~I  353 (428)
T PRK01029        289 SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY----------RNSSCPAWSPDGKKIAFCSV-----IKGVRQI  353 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC----------CCccceeECCCCCEEEEEEc-----CCCCcEE
Confidence            99999877665 46655555  4432 22222222211          11123668999999988654     2234579


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecC--CCeEEEEEeCCcee
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMF--TGSVFVYIAFSLQM  295 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~--dg~i~vwd~~~~~~  295 (297)
                      .+||+.+++..........+..+.|+|||+.|+.....  ...|+++|+.+++.
T Consensus       354 ~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        354 CVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            99999988765544333347889999999988755431  35688889877653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.6e-10  Score=102.06  Aligned_cols=178  Identities=13%  Similarity=0.114  Sum_probs=114.1

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      .|.+ |..... .+.+. .+...+....|+|||+.|+..+.+   ..|++||+.+++... +...........|+|||+.
T Consensus       199 ~l~i~d~dG~~-~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYN-EQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCC-ceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence            4555 544333 34444 566778899999999988876543   258899998776432 2222334457899999998


Q ss_pred             EEE-EeCCCc--EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         174 IVS-IAKDGK--AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       174 l~s-~~~d~~--v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      |+. .+.++.  |++||+.+++.. .+..+..          ......|+|||+.|+..+.     ......|+++|+.+
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~----------~~~~p~wSpDG~~I~f~s~-----~~g~~~Iy~~dl~~  339 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALT-RITRHRA----------IDTEPSWHPDGKSLIFTSE-----RGGKPQIYRVNLAS  339 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeE-ECccCCC----------CccceEECCCCCEEEEEEC-----CCCCceEEEEECCC
Confidence            765 455664  777888776543 3322211          1123568999998887654     23345788889988


Q ss_pred             CceEEEeccCCCeEEEEEcCCCCEEEEEecCCC--eEEEEEeCCce
Q psy3337         251 GRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--SVFVYIAFSLQ  294 (297)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg--~i~vwd~~~~~  294 (297)
                      ++..............+|+|||++|+..+..++  .|.++|+.+++
T Consensus       340 g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        340 GKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            775443222222456799999999887665234  46667877664

>KOG1334|consensus

Probab=99.38  E-value=3.2e-12  Score=107.17  Aligned_cols=253  Identities=11%  Similarity=0.033  Sum_probs=161.7

Q ss_pred             eeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCC
Q psy3337           4 DVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKI   83 (297)
Q Consensus         4 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
                      +-|...|..|++++.|..+-+|+-........-++...                  .+..+.          .-.|.-..
T Consensus       148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~------------------~NvfQa----------KFiP~s~d  199 (559)
T KOG1334|consen  148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC------------------NNVFQA----------KFIPFSGD  199 (559)
T ss_pred             eeecccCceeeccCccceEEeehhhccCcccccccccc------------------cchhhh----------hccCCCCC
Confidence            34778889999999999999998765432210000000                  000000          00000000


Q ss_pred             CCCCCcCCCCCCCceEEE-E-eeCCCeEEEEe-cCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEec---
Q psy3337          84 EDPPILNSIDSKEKNLRF-G-FKTFDSVQTVF-AGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIE---  156 (297)
Q Consensus        84 ~~~~~l~~~~~~d~~i~~-~-~~~~~~~~~~~-~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~---  156 (297)
                      ..    ....+.|+.+++ . +.++.+..+.. ..|.++|.-++.-|+. .-|.+++.|+.+.-+|++...+...+.   
T Consensus       200 ~t----i~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~  275 (559)
T KOG1334|consen  200 RT----IVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE  275 (559)
T ss_pred             cC----ceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence            00    236678999999 4 45555543333 4799999999999975 678999999999999998766543332   


Q ss_pred             cccC---CeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCce------eeeeeccCCCCceEEEEeeeeeeeeeCCCCe--
Q psy3337         157 AHSK---EIDDVDFSISGE-QIVSIAKDGKAFVWNSKNGSL------SKELKWNTPDNIKYLFKRCRYGLVEDSPKRS--  224 (297)
Q Consensus       157 ~~~~---~v~~~~~sp~~~-~l~s~~~d~~v~lwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--  224 (297)
                      .+..   ....++..|... +|++++.|..+++||.+.-..      +..+..+.-..    -....+..++++.++.  
T Consensus       276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~----d~~v~ITgl~Ysh~~sEl  351 (559)
T KOG1334|consen  276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE----DDPVNITGLVYSHDGSEL  351 (559)
T ss_pred             cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc----cCcccceeEEecCCccce
Confidence            2333   567889999554 899999999999999874321      22222211000    0001111122222111  


Q ss_pred             ---------EEEEec---------------------------------------cCcccccCCCCeEEEEeCCCCceEEE
Q psy3337         225 ---------RLFTLA---------------------------------------NPLAQNKRGISYVQQWDVDSGRLRLA  256 (297)
Q Consensus       225 ---------~l~~~~---------------------------------------~~~~~~g~~d~~i~~wd~~~~~~~~~  256 (297)
                               ||+.-.                                       ..++++|++-|.|.+|+-.+++.++.
T Consensus       352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~  431 (559)
T KOG1334|consen  352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF  431 (559)
T ss_pred             eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence                     111000                                       01678899999999999999999999


Q ss_pred             eccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         257 REMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       257 ~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +.+... |+|+.=+|--..||+.+- |-.|+||-..+.
T Consensus       432 MegDr~VVNCLEpHP~~PvLAsSGi-d~DVKIWTP~~~  468 (559)
T KOG1334|consen  432 MEGDRHVVNCLEPHPHLPVLASSGI-DHDVKIWTPLTA  468 (559)
T ss_pred             hhcccceEeccCCCCCCchhhccCC-ccceeeecCCcc
Confidence            988666 999999999999999999 999999987543

>KOG0644|consensus

Probab=99.37  E-value=3.9e-13  Score=119.17  Aligned_cols=117  Identities=21%  Similarity=0.382  Sum_probs=104.4

Q ss_pred             EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy3337         110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~  189 (297)
                      +.+. +|...|+|+.|...|.++++|+.|..|+||.+++..++....+|.+.++.++.+.+..++++++.|..|++|-+.
T Consensus       184 krLl-gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  184 KRLL-GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHH-hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            3445 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         190 NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .+.++..+.+|+.          .+..++|+|-.    +        .+.||++++||.+
T Consensus       263 ~~~pvsvLrghtg----------avtaiafsP~~----s--------ss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTG----------AVTAIAFSPRA----S--------SSDDGTCRIWDAR  300 (1113)
T ss_pred             CCchHHHHhcccc----------ceeeeccCccc----c--------CCCCCceEecccc
Confidence            9999999998863          23446777765    2        4569999999988

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=1.5e-09  Score=91.39  Aligned_cols=198  Identities=11%  Similarity=0.085  Sum_probs=137.1

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC----------CCcEEEEeCCCCeeeEEecccc------
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT----------DGHLRLWSFPKMKPLLHIEAHS------  159 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~------  159 (297)
                      ++|.+ |..+++.+.++..|....  .+ +||||+.|+.+..          +..|.+||..+++.+..+.-..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            78888 999999999888565554  34 9999988876655          7899999999999988776322      


Q ss_pred             -CCeeEEEEccCCCEEEEEe-C-CCcEEEEEcCCCceeeeeeccC-----------------------------------
Q psy3337         160 -KEIDDVDFSISGEQIVSIA-K-DGKAFVWNSKNGSLSKELKWNT-----------------------------------  201 (297)
Q Consensus       160 -~~v~~~~~sp~~~~l~s~~-~-d~~v~lwd~~~~~~~~~~~~~~-----------------------------------  201 (297)
                       .....++++|||++|+... . +..|.+.|+.+++.+.++....                                   
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence             2234789999999988765 3 6889999988776444322110                                   


Q ss_pred             ---------------C-----CCceEEEEe----------------------------------eeeeeeeeCCCCeEEE
Q psy3337         202 ---------------P-----DNIKYLFKR----------------------------------CRYGLVEDSPKRSRLF  227 (297)
Q Consensus       202 ---------------~-----~~~~~~~~~----------------------------------~~~~~~~~s~~~~~l~  227 (297)
                                     |     ++..+..+.                                  ..+..++++|+++.++
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence                           1     110000000                                  0001266677777777


Q ss_pred             EeccCcccc--cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC-EEEEEecCCCeEEEEEeCCceecC
Q psy3337         228 TLANPLAQN--KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       228 ~~~~~~~~~--g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      .+......-  -...+.|.++|..+++.+..+.....+..++++|||+ +|++....++.|.++|+.+++.++
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence            643200000  0112589999999999999988777799999999999 777776437889999999998764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2111|consensus

Probab=99.33  E-value=3.1e-10  Score=90.70  Aligned_cols=104  Identities=15%  Similarity=0.230  Sum_probs=87.6

Q ss_pred             CCcCCCCCCCceEEE-EeeCCCe--EEEEecCCCCcEEEEEEecCCCEEEEEcCCCc-EEEEeCCCCeeeEEeccc--cC
Q psy3337          87 PILNSIDSKEKNLRF-GFKTFDS--VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGH-LRLWSFPKMKPLLHIEAH--SK  160 (297)
Q Consensus        87 ~~l~~~~~~d~~i~~-~~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~--~~  160 (297)
                      .+|.-.|-.-|.|+| ++..-+.  ...+. .|...|.|++++.+|.++||++..|+ |+|||..+|+.+..++.-  ..
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A  227 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA  227 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh
Confidence            344556777899999 8766554  24555 99999999999999999999999997 689999999999988643  34


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~  191 (297)
                      .|++++|||+..+|+++|..|+++++.++..
T Consensus       228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            6999999999999999999999999998753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.7e-10  Score=100.24  Aligned_cols=174  Identities=14%  Similarity=0.147  Sum_probs=110.4

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEe--CCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWS--FPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|++ ++.+++... +. ...+.+.+.+|+|||+.|+ +.+.++...||.  +..+. ...+..+........|+|||+
T Consensus       220 ~~I~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~  296 (427)
T PRK02889        220 PVVYVHDLATGRRRV-VA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGR  296 (427)
T ss_pred             cEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCC
Confidence            35777 777776543 32 3344566899999998876 567777766665  44443 455655666667889999999


Q ss_pred             EEEEEeC-CCcEEEEEc--CCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIVSIAK-DGKAFVWNS--KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~s~~~-d~~v~lwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|+..+. ++...+|.+  .++.. ..+....    ..      .....|+|+|++|+..+.     ......|.+||+.
T Consensus       297 ~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g----~~------~~~~~~SpDG~~Ia~~s~-----~~g~~~I~v~d~~  360 (427)
T PRK02889        297 SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTG----SY------NTSPRISPDGKLLAYISR-----VGGAFKLYVQDLA  360 (427)
T ss_pred             EEEEEecCCCCcEEEEEECCCCce-EEEecCC----CC------cCceEECCCCCEEEEEEc-----cCCcEEEEEEECC
Confidence            8876554 466666654  34432 2222111    00      112568999999987654     1223479999999


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC--eEEEEEe
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--SVFVYIA  290 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg--~i~vwd~  290 (297)
                      +++..... .......+.|+|||+.|+..+...|  .+.+.++
T Consensus       361 ~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        361 TGQVTALT-DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CCCeEEcc-CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            87755433 2233578899999999888776233  3555554

>KOG4547|consensus

Probab=99.30  E-value=8.9e-10  Score=94.77  Aligned_cols=183  Identities=15%  Similarity=0.144  Sum_probs=143.7

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEe--cCCCCcEEEEEEe--------------------cCCCEEEEEcCCCcEEEEeC
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVF--AGSESLQRVVRLS--------------------RNGDLMVTGGTDGHLRLWSF  146 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~--~~h~~~v~~~~~s--------------------~~g~~l~s~~~d~~i~iwd~  146 (297)
                      ......||.+++ +..+++..+.+.  ..-.+..++..|.                    -|-..++-|...|.|.+|++
T Consensus         8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~   87 (541)
T KOG4547|consen    8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV   87 (541)
T ss_pred             EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence            345677999999 888887777665  1223444555552                    12236778888999999999


Q ss_pred             CCCeeeEEec--cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe
Q psy3337         147 PKMKPLLHIE--AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS  224 (297)
Q Consensus       147 ~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  224 (297)
                      ..++....+.  .|.+.|.++.++.+-..|.+++.|..+..|+......++......+.          ...++.+||+.
T Consensus        88 ~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~----------~~sl~is~D~~  157 (541)
T KOG4547|consen   88 AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL----------VSSLCISPDGK  157 (541)
T ss_pred             cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc----------cceEEEcCCCC
Confidence            9999887775  68999999999999999999999999999999988887777654422          22467899999


Q ss_pred             EEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCC-----CCEEEEEecCCCeEEEEEeCC
Q psy3337         225 RLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDD-----GRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       225 ~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~d-----g~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .++++          .+.|.+||+.+++.+..|.+|.. |++++|..+     |.+++++...+..+.+|-+..
T Consensus       158 ~l~~a----------s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTA----------SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEec----------cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99885          46999999999999999999988 999999887     778777665466777886643

>KOG2139|consensus

Probab=99.28  E-value=1.2e-10  Score=94.68  Aligned_cols=163  Identities=12%  Similarity=0.101  Sum_probs=114.6

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc-ccCCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCC---
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA-HSKEIDDVDFSIS-GEQIVSIAKDGKAFVWNSKNG---  191 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~-~~~l~s~~~d~~v~lwd~~~~---  191 (297)
                      +..+..++|++.-..++++..|-.|++||-.. +....++. ....|++++|-|. +..|+.|+..| |.+|.....   
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence            34567899999777789999999999999765 44444442 3457999999995 45677777665 889976421   


Q ss_pred             -ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe-ccCCCeEEEEEc
Q psy3337         192 -SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR-EMKESLSALAVR  269 (297)
Q Consensus       192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~s  269 (297)
                       ..+.-...+.... ........+..+.|++||..+++++.       .+..|.+||+.+++.+... .+...++-+.||
T Consensus       176 ~r~~~~~s~~~~qv-l~~pgh~pVtsmqwn~dgt~l~tAS~-------gsssi~iWdpdtg~~~pL~~~glgg~slLkwS  247 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQV-LQDPGHNPVTSMQWNEDGTILVTASF-------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS  247 (445)
T ss_pred             ccccccccccchhh-eeCCCCceeeEEEEcCCCCEEeeccc-------CcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence             1111011110000 00000123446889999999999876       5789999999998877666 344559999999


Q ss_pred             CCCCEEEEEecCCCeEEEEEe
Q psy3337         270 DDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      |||.+|++++- |+..++|..
T Consensus       248 Pdgd~lfaAt~-davfrlw~e  267 (445)
T KOG2139|consen  248 PDGDVLFAATC-DAVFRLWQE  267 (445)
T ss_pred             CCCCEEEEecc-cceeeeehh
Confidence            99999999999 999999954

>KOG1587|consensus

Probab=99.27  E-value=2.3e-10  Score=101.39  Aligned_cols=169  Identities=18%  Similarity=0.241  Sum_probs=111.3

Q ss_pred             CCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCee--eE----EeccccCCeeEEEEccCC--CEEEEEeCCCcEEE
Q psy3337         115 GSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKP--LL----HIEAHSKEIDDVDFSISG--EQIVSIAKDGKAFV  185 (297)
Q Consensus       115 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~sp~~--~~l~s~~~d~~v~l  185 (297)
                      .-...|+|+.|+| +.++++.|..+|.|.+||++.+..  ..    ....|..+++.+.|..+.  .-|++++.||.|..
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence            4567899999999 568899999999999999986653  22    223588899999997644  44999999999999


Q ss_pred             EEcCCCce-ee---------------------eeeccCCCCceEEE--------Ee-----------------------e
Q psy3337         186 WNSKNGSL-SK---------------------ELKWNTPDNIKYLF--------KR-----------------------C  212 (297)
Q Consensus       186 wd~~~~~~-~~---------------------~~~~~~~~~~~~~~--------~~-----------------------~  212 (297)
                      |+++.-.. ..                     .+..+..+...+++        .+                       .
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            98763211 00                     01111100001111        10                       1


Q ss_pred             eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC-CCceEEEeccCCC-eEEEEEcCCCC-EEEEEecCCCeEEEEE
Q psy3337         213 RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD-SGRLRLAREMKES-LSALAVRDDGR-FVAVGTMFTGSVFVYI  289 (297)
Q Consensus       213 ~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~-~~~~~~~~~~~~~-v~~~~~s~dg~-~l~~~~~~dg~i~vwd  289 (297)
                      .+..+.++|=+..++..       ++ |-++++|.-. ...++..+..+.. |++++|||... .++++.. ||.|.+||
T Consensus       400 ~v~~v~~nPF~~k~fls-------~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~-~G~l~iWD  470 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLS-------VG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG-DGNLDIWD  470 (555)
T ss_pred             ceEeeecCCCccceeee-------ec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC-CCceehhh
Confidence            11223333333333322       22 8899999988 5667777766666 99999999654 5677777 99999999


Q ss_pred             eCC
Q psy3337         290 AFS  292 (297)
Q Consensus       290 ~~~  292 (297)
                      +..
T Consensus       471 Ll~  473 (555)
T KOG1587|consen  471 LLQ  473 (555)
T ss_pred             hhc
Confidence            864

>KOG1517|consensus

Probab=99.26  E-value=8.2e-10  Score=100.93  Aligned_cols=185  Identities=15%  Similarity=0.169  Sum_probs=121.3

Q ss_pred             CCCCCCCceEEE--EeeCC----CeEEEEe------cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          90 NSIDSKEKNLRF--GFKTF----DSVQTVF------AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        90 ~~~~~~d~~i~~--~~~~~----~~~~~~~------~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                      ...++.||.|+|  +..+.    +.+....      .+..+.=.-+.|.....+|+++|.-..|+|||...-..+..+..
T Consensus      1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred             eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc
Confidence            458899999999  44432    2222221      01111113567877666777777788999999987766666543


Q ss_pred             -ccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc---eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeE-EEEecc
Q psy3337         158 -HSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGS---LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSR-LFTLAN  231 (297)
Q Consensus       158 -~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~  231 (297)
                       ....|+++.-+- .|+.+++|..||.|++||.+...   .+...+.|....        .+..+.+.+.|-. |++   
T Consensus      1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~--------~Iv~~slq~~G~~elvS--- 1274 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE--------PIVHLSLQRQGLGELVS--- 1274 (1387)
T ss_pred             CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc--------cceeEEeecCCCcceee---
Confidence             334566666543 57899999999999999987542   344455443111        0223445565533 555   


Q ss_pred             CcccccCCCCeEEEEeCCCCceEE--Eecc----CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         232 PLAQNKRGISYVQQWDVDSGRLRL--AREM----KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       232 ~~~~~g~~d~~i~~wd~~~~~~~~--~~~~----~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                           |+.+|.|++||++......  .+..    .+..+++..+++...+++|+  -+.|+||++..
T Consensus      1275 -----gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs--~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1275 -----GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS--AQLIKIYSLSG 1334 (1387)
T ss_pred             -----eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC--cceEEEEecCh
Confidence                 6779999999999732221  1222    23489999999999999999  48999999854

>KOG1963|consensus

Probab=99.23  E-value=5.1e-10  Score=100.23  Aligned_cols=161  Identities=14%  Similarity=0.190  Sum_probs=122.2

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC--C--eeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK--M--KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      .|.-.++|.++||+++++|+|..||.|.+|.--.  .  .....+.=|...|.+++|+++|.+|++|+..+.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777789999999999999999999999996321  1  12345666888999999999999999999999999999998


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC----------
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK----------  260 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~----------  260 (297)
                      ++.  ++-..-  + .      .+..+.++||+.+.+.+..        |..|.+....+......+.+-          
T Consensus       283 ~~k--qfLPRL--g-s------~I~~i~vS~ds~~~sl~~~--------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~  343 (792)
T KOG1963|consen  283 GKK--QFLPRL--G-S------PILHIVVSPDSDLYSLVLE--------DNQIHLIKASDLEIKSTISGIKPPTPSTKTR  343 (792)
T ss_pred             CCc--cccccc--C-C------eeEEEEEcCCCCeEEEEec--------CceEEEEeccchhhhhhccCccCCCcccccc
Confidence            862  222111  0 1      1223678999998888766        999999988765544443321          


Q ss_pred             -CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         261 -ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       261 -~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                       .. .+.++++|--+.++..+. .|.|.+||+.+-+.
T Consensus       344 ~~~l~t~~~idpr~~~~vln~~-~g~vQ~ydl~td~~  379 (792)
T KOG1963|consen  344 PQSLTTGVSIDPRTNSLVLNGH-PGHVQFYDLYTDST  379 (792)
T ss_pred             ccccceeEEEcCCCCceeecCC-CceEEEEeccccce
Confidence             22 678899997677777777 99999999877554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2.7e-09  Score=94.29  Aligned_cols=175  Identities=14%  Similarity=0.163  Sum_probs=111.2

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      .|.+ ++.+++... +. ...+.+....|+|||+.|+ +...++  .|++||+.+++. ..+..+........|+||++.
T Consensus       224 ~l~~~~l~~g~~~~-l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~  300 (430)
T PRK00178        224 RIFVQNLDTGRREQ-IT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRT  300 (430)
T ss_pred             EEEEEECCCCCEEE-cc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCE
Confidence            4666 666665433 22 3334455789999998877 444444  688889987764 345556666778899999998


Q ss_pred             EEEEeC-CC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         174 IVSIAK-DG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       174 l~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      |+..+. ++  .|+++|+.+++.. .+.....    .      .....|+|+|+.|+....     ......|.+||+.+
T Consensus       301 i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~----~------~~~~~~Spdg~~i~~~~~-----~~~~~~l~~~dl~t  364 (430)
T PRK00178        301 LYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN----Y------NARPRLSADGKTLVMVHR-----QDGNFHVAAQDLQR  364 (430)
T ss_pred             EEEEECCCCCceEEEEECCCCCEE-EeecCCC----C------ccceEECCCCCEEEEEEc-----cCCceEEEEEECCC
Confidence            776553 33  5777788776543 2221110    0      112568999999988754     22234689999998


Q ss_pred             CceEEEeccCCCeEEEEEcCCCCEEEEEecCC--CeEEEEEeCC
Q psy3337         251 GRLRLAREMKESLSALAVRDDGRFVAVGTMFT--GSVFVYIAFS  292 (297)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d--g~i~vwd~~~  292 (297)
                      ++... +..........|+|||+.|+..+..+  ..|.++++..
T Consensus       365 g~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        365 GSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             CCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            76543 32222234668999999998776523  3466777643

>KOG3881|consensus

Probab=99.23  E-value=8.2e-10  Score=90.56  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=119.8

Q ss_pred             CCCCC--ceEEE-EeeCCCeEEEEec------CC--CCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCC-eeeEEecc
Q psy3337          92 IDSKE--KNLRF-GFKTFDSVQTVFA------GS--ESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKM-KPLLHIEA  157 (297)
Q Consensus        92 ~~~~d--~~i~~-~~~~~~~~~~~~~------~h--~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~  157 (297)
                      .|+..  +.+.+ +++..+.+..-..      +-  .-.++.+.|-+.  ...|+++..-+.+++||.+.+ +++..|.-
T Consensus       166 ~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~  245 (412)
T KOG3881|consen  166 TGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF  245 (412)
T ss_pred             cCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc
Confidence            45555  56667 6665533322210      11  123567888887  789999999999999999865 47888877


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE-LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      -..+++++...|++++++++..-+.+..||++.++.+.. +.+-.          ..+..+..+|..+++++++.     
T Consensus       246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t----------Gsirsih~hp~~~~las~GL-----  310 (412)
T KOG3881|consen  246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT----------GSIRSIHCHPTHPVLASCGL-----  310 (412)
T ss_pred             ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc----------CCcceEEEcCCCceEEeecc-----
Confidence            788999999999999999999999999999998877655 43322          12234556999999999766     


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCC
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDD  271 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~d  271 (297)
                         |+.|+|+|+.+.+++...-....++++-+.++
T Consensus       311 ---DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  311 ---DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             ---ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence               99999999999777666555555777777553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=3.8e-09  Score=92.97  Aligned_cols=174  Identities=13%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|++ ++.+++... +. .+...+.+++|+|||+.|+ +.+.++  .|++||+.++.. ..+..+........|+|+++
T Consensus       214 ~~i~v~d~~~g~~~~-~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~  290 (417)
T TIGR02800       214 PEIYVQDLATGQREK-VA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGK  290 (417)
T ss_pred             cEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCC
Confidence            46777 777775543 32 4555667899999998776 444444  588999887654 34444555566789999999


Q ss_pred             EEEEEeC-CC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIVSIAK-DG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .|+..+. ++  .|++||+.+++.. .+..+..          ....+.|+|++++++....     ......|.+||+.
T Consensus       291 ~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~----------~~~~~~~spdg~~i~~~~~-----~~~~~~i~~~d~~  354 (417)
T TIGR02800       291 SIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG----------YNASPSWSPDGDLIAFVHR-----EGGGFNIAVMDLD  354 (417)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEE-EeecCCC----------CccCeEECCCCCEEEEEEc-----cCCceEEEEEeCC
Confidence            8876654 33  5778888766532 2322210          1123568999999888665     2222389999998


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC---eEEEEEeC
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG---SVFVYIAF  291 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg---~i~vwd~~  291 (297)
                      ++... .+..........|+|||++|+..+. ++   .+++.+..
T Consensus       355 ~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~-~~~~~~l~~~~~~  397 (417)
T TIGR02800       355 GGGER-VLTDTGLDESPSFAPNGRMILYATT-RGGRGVLGLVSTD  397 (417)
T ss_pred             CCCeE-EccCCCCCCCceECCCCCEEEEEEe-CCCcEEEEEEECC
Confidence            76543 3333333556789999999888776 43   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547|consensus

Probab=99.22  E-value=4.3e-09  Score=90.66  Aligned_cols=145  Identities=6%  Similarity=-0.007  Sum_probs=115.6

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      .-|...|.|.+ +...|+....+. ..|.+.|.++.++.+-..|.+++.|..+..|+......++.+.+....+.+++.+
T Consensus        74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence            35667788888 888888887777 6799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC-CeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK-RSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      ||+..+++++  ++|++||+.+++.+..|.+|......+.|.     .. ++-. |.++++...       .+..+.+|-
T Consensus       154 ~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~-----~~-~~g~~G~~vLssa~-------~~r~i~~w~  218 (541)
T KOG4547|consen  154 PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFT-----TL-IDGIIGKYVLSSAA-------AERGITVWV  218 (541)
T ss_pred             CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEE-----Ee-ccccccceeeeccc-------cccceeEEE
Confidence            9999999887  679999999999999999997443233332     11 2222 667766543       355666665


Q ss_pred             CCC
Q psy3337         248 VDS  250 (297)
Q Consensus       248 ~~~  250 (297)
                      +..
T Consensus       219 v~~  221 (541)
T KOG4547|consen  219 VEK  221 (541)
T ss_pred             EEc
Confidence            543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.21  E-value=8.6e-08  Score=82.09  Aligned_cols=192  Identities=14%  Similarity=0.126  Sum_probs=119.6

Q ss_pred             CCCCCCCceEEE-EeeC-CCeEEE---Ee---------cCCCCcEEEEEEecCCCEEEEEc-CCCcEEEEeCCCCe--e-
Q psy3337          90 NSIDSKEKNLRF-GFKT-FDSVQT---VF---------AGSESLQRVVRLSRNGDLMVTGG-TDGHLRLWSFPKMK--P-  151 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~-~~~~~~---~~---------~~h~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~--~-  151 (297)
                      ..+.-.++++.+ ++.. |.....   +.         ........++.|+|+|+++++.. ....|.+|++....  . 
T Consensus       102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~  181 (345)
T PF10282_consen  102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT  181 (345)
T ss_dssp             EEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred             EEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence            334455777777 6665 333222   11         01234578999999999877653 34579999986544  2 


Q ss_pred             -eEEec-cccCCeeEEEEccCCCEEEEEe-CCCcEEEEEcC--CCce--eeeeecc--CCCCceEEEEeeeeeeeeeCCC
Q psy3337         152 -LLHIE-AHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNSK--NGSL--SKELKWN--TPDNIKYLFKRCRYGLVEDSPK  222 (297)
Q Consensus       152 -~~~~~-~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~--~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~  222 (297)
                       ...+. ........+.|+|++++++... .+++|.++++.  ++..  +..+...  ...+.      ..-..+.++||
T Consensus       182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~i~ispd  255 (345)
T PF10282_consen  182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE------NAPAEIAISPD  255 (345)
T ss_dssp             EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS------SSEEEEEE-TT
T ss_pred             EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc------CCceeEEEecC
Confidence             12222 2345678999999999887665 57889999987  4422  2222111  01110      01234788999


Q ss_pred             CeEEEEeccCcccccCCCCeEEEEeCCC--Cce--EEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe--CCce
Q psy3337         223 RSRLFTLANPLAQNKRGISYVQQWDVDS--GRL--RLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA--FSLQ  294 (297)
Q Consensus       223 ~~~l~~~~~~~~~~g~~d~~i~~wd~~~--~~~--~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~--~~~~  294 (297)
                      |++|++...       ....|.+|++..  +++  +..+..... .+.++++|+|++|+++...++.|.+|++  .+|.
T Consensus       256 g~~lyvsnr-------~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  256 GRFLYVSNR-------GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             SSEEEEEEC-------TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCEEEEEec-------cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence            999999765       367899999843  433  334444334 8999999999999999865789999976  4554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.20  E-value=1.3e-08  Score=85.94  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=83.3

Q ss_pred             CCCCCCCc-eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEK-NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~-~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      ...+..|+ .+-+ +..+++.. .+. ..-+.|.++..+|+|++++.+-....+.+.|+.+++....-+...+-|+.+.|
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~k-r~e-~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~  451 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEVK-RIE-KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW  451 (668)
T ss_pred             eEEeccCCceEEEEecCCceEE-Eee-CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence            44566666 6777 88777644 444 67788999999999999999988889999999999876555566778999999


Q ss_pred             ccCCCEEEEEeCCC----cEEEEEcCCCceee
Q psy3337         168 SISGEQIVSIAKDG----KAFVWNSKNGSLSK  195 (297)
Q Consensus       168 sp~~~~l~s~~~d~----~v~lwd~~~~~~~~  195 (297)
                      +|+++++|-+--+|    .|+++|+..++...
T Consensus       452 ~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         452 HPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             cCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            99999999886664    58999998776543

>KOG1354|consensus

Probab=99.20  E-value=6.8e-10  Score=89.75  Aligned_cols=175  Identities=11%  Similarity=0.167  Sum_probs=120.6

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe---eeEEeccc-----cCCeeEEEEcc-CCCEEEEEeC
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK---PLLHIEAH-----SKEIDDVDFSI-SGEQIVSIAK  179 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~-----~~~v~~~~~sp-~~~~l~s~~~  179 (297)
                      .+.+...|+-.|.+++++.|...++++ .|=.|.+|+++--.   .+..++.+     +.-|++..|+| ..+.|+.++.
T Consensus       156 rRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS  234 (433)
T KOG1354|consen  156 RRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS  234 (433)
T ss_pred             eeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence            344445799999999999999999887 57789999986322   12233333     34588999999 4567888889


Q ss_pred             CCcEEEEEcCCCcee----eeeecc-CCCCceEE-EEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-Cc
Q psy3337         180 DGKAFVWNSKNGSLS----KELKWN-TPDNIKYL-FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GR  252 (297)
Q Consensus       180 d~~v~lwd~~~~~~~----~~~~~~-~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~  252 (297)
                      .|+|+|-|++.....    ..+..+ .|....+. --...+..+.|+++|+++++-.         --+|++||+.. .+
T Consensus       235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD---------yltvk~wD~nme~~  305 (433)
T KOG1354|consen  235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD---------YLTVKLWDLNMEAK  305 (433)
T ss_pred             CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec---------cceeEEEeccccCC
Confidence            999999999843221    111111 12111110 0012345688999999999843         37999999954 66


Q ss_pred             eEEEeccCCC----------------eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         253 LRLAREMKES----------------LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       253 ~~~~~~~~~~----------------v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++.+++.|..                -..++|+-++.++++|+. ...+++|++..|.
T Consensus       306 pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy-~n~frvf~~~~gs  362 (433)
T KOG1354|consen  306 PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY-NNVFRVFNLARGS  362 (433)
T ss_pred             cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc-cceEEEecCCCCc
Confidence            7766665521                246789999999999999 9999999966543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=8.8e-09  Score=90.49  Aligned_cols=182  Identities=18%  Similarity=0.100  Sum_probs=107.7

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCE--E-EEEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDL--M-VTGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~--l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ..|.+ |...+.. +.+. .....+..-.|||||+.  + ++...++  .|++.++.+++.. .+....+.....+|+||
T Consensus       165 ~~l~~~d~dG~~~-~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPR  241 (428)
T ss_pred             ceEEEEcCCCCCc-eEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCC
Confidence            45766 6655544 3344 34455678899999975  2 2443443  5778888777543 33333445567899999


Q ss_pred             CCEEEEEeC-CC----cEEEEEcCCCc--eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         171 GEQIVSIAK-DG----KAFVWNSKNGS--LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       171 ~~~l~s~~~-d~----~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      |+.|+..+. +|    .+.+|++..+.  ....+.....         .......|+|||+.|+..+.     ......|
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~wSPDG~~Laf~s~-----~~g~~~l  307 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSFSPDGTRLVFVSN-----KDGRPRI  307 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEECCCCCEEEEEEC-----CCCCceE
Confidence            998886553 22    34446765431  1122211100         01123578999998887654     1222356


Q ss_pred             EEEeCCC-CceEEEeccCC-CeEEEEEcCCCCEEEEEecCC--CeEEEEEeCCcee
Q psy3337         244 QQWDVDS-GRLRLAREMKE-SLSALAVRDDGRFVAVGTMFT--GSVFVYIAFSLQM  295 (297)
Q Consensus       244 ~~wd~~~-~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~~d--g~i~vwd~~~~~~  295 (297)
                      +++++.. +.....+.... .+....|||||+.|+.....+  ..|.+||+.+++.
T Consensus       308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            6666643 33334444333 378899999999998776412  3699999987764

>KOG1240|consensus

Probab=99.17  E-value=3.3e-09  Score=98.40  Aligned_cols=163  Identities=13%  Similarity=0.090  Sum_probs=112.8

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC--e-----eeEEecccc-C-CeeEEEEcc-CCC-EEEEEeCCCcEE
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM--K-----PLLHIEAHS-K-EIDDVDFSI-SGE-QIVSIAKDGKAF  184 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--~-----~~~~~~~~~-~-~v~~~~~sp-~~~-~l~s~~~d~~v~  184 (297)
                      ...++.++...+.++.+|.++.||.|.+.++...  +     ..+....+. + .|...+|.. ... .++.+..-+.|.
T Consensus      1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            4567888999999999999999999999998641  1     112222222 2 233334433 233 777888889999


Q ss_pred             EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC--C
Q psy3337         185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE--S  262 (297)
Q Consensus       185 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~--~  262 (297)
                      .||++.......++....        .+.+.+++.+|-+..++.        |+..|.+.+||++=+.++..+..+.  .
T Consensus      1177 ~~D~r~~~~~w~lk~~~~--------hG~vTSi~idp~~~Wlvi--------Gts~G~l~lWDLRF~~~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLR--------HGLVTSIVIDPWCNWLVI--------GTSRGQLVLWDLRFRVPILSWEHPARAP 1240 (1431)
T ss_pred             EecchhhhhHHhhhcCcc--------ccceeEEEecCCceEEEE--------ecCCceEEEEEeecCceeecccCcccCC
Confidence            999987666655544322        223445778999998887        6669999999999888888776543  3


Q ss_pred             eEEEEEcCCC---CEEE-EEe-cCCCeEEEEEeCCcee
Q psy3337         263 LSALAVRDDG---RFVA-VGT-MFTGSVFVYIAFSLQM  295 (297)
Q Consensus       263 v~~~~~s~dg---~~l~-~~~-~~dg~i~vwd~~~~~~  295 (297)
                      +..+..+|--   ...+ ++. . .+.|.+|++.+|.+
T Consensus      1241 i~~v~~~~~~~~~S~~vs~~~~~-~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSS-NNEVSTWNMETGLR 1277 (1431)
T ss_pred             cceEEeeccCCCCceEEEecccC-CCceeeeecccCcc
Confidence            7777777632   3444 444 4 78899999988754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=8.1e-09  Score=91.39  Aligned_cols=174  Identities=14%  Similarity=0.180  Sum_probs=108.1

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEE-EcCCCc--EEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVT-GGTDGH--LRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      .|++ ++.+++... +. ..........|+|||+.|+. .+.++.  |+++|+.+++. ..+..+........|+||++.
T Consensus       243 ~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~  319 (448)
T PRK04792        243 EIFVQDIYTQVREK-VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKS  319 (448)
T ss_pred             EEEEEECCCCCeEE-ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCE
Confidence            4666 776665432 22 22233447899999997764 455664  77888877664 445555556778999999998


Q ss_pred             EEEEeC-CC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         174 IVSIAK-DG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       174 l~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      |+..+. ++  .|+++|+.+++.. .+.....    .      .....|+|||++|+....     ......|.++|+.+
T Consensus       320 I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~----~------~~~~~~SpDG~~l~~~~~-----~~g~~~I~~~dl~~  383 (448)
T PRK04792        320 LIFTSERGGKPQIYRVNLASGKVS-RLTFEGE----Q------NLGGSITPDGRSMIMVNR-----TNGKFNIARQDLET  383 (448)
T ss_pred             EEEEECCCCCceEEEEECCCCCEE-EEecCCC----C------CcCeeECCCCCEEEEEEe-----cCCceEEEEEECCC
Confidence            876553 33  4666777766543 2221110    0      012468999999988654     22234677789888


Q ss_pred             CceEEEeccCCCeEEEEEcCCCCEEEEEecCCC--eEEEEEeC
Q psy3337         251 GRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--SVFVYIAF  291 (297)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg--~i~vwd~~  291 (297)
                      ++... +..........|+|||+.|+.....++  .++++++.
T Consensus       384 g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        384 GAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            76543 332222345689999999877665244  36777764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=3.6e-08  Score=86.23  Aligned_cols=177  Identities=9%  Similarity=0.058  Sum_probs=113.6

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCE-EEEEcC---CCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDL-MVTGGT---DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ...|.+ |..... .+.+. ... .+....|+|||+. ++..+.   +..|+++|+.+++..... ...+.+....|+||
T Consensus       168 ~~~l~~~d~dg~~-~~~~~-~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPD  243 (419)
T PRK04043        168 KSNIVLADYTLTY-QKVIV-KGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKD  243 (419)
T ss_pred             cceEEEECCCCCc-eeEEc-cCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCC
Confidence            446666 654443 34443 223 6779999999984 654433   356899999888754433 34555677889999


Q ss_pred             CCEEEEE-eCC--CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         171 GEQIVSI-AKD--GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       171 ~~~l~s~-~~d--~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      |+.++.. +.+  ..|.++|+.++.. ..+..+...          .....|+|||+.|+..+.     ......|+++|
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~----------d~~p~~SPDG~~I~F~Sd-----r~g~~~Iy~~d  307 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGI----------DVNGNFVEDDKRIVFVSD-----RLGYPNIFMKK  307 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCc----------cCccEECCCCCEEEEEEC-----CCCCceEEEEE
Confidence            9877643 333  5688888877653 333322110          011358999999888775     33345899999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC--------CeEEEEEeCCce
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT--------GSVFVYIAFSLQ  294 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d--------g~i~vwd~~~~~  294 (297)
                      +.+++..+......  ....|||||++|+......        ..|.+.|+.+++
T Consensus       308 l~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        308 LNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence            99877654433221  2248999999988776512        368888887765

>KOG4497|consensus

Probab=99.14  E-value=2.7e-09  Score=85.94  Aligned_cols=178  Identities=13%  Similarity=0.125  Sum_probs=117.0

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE-EEEEeC
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ-IVSIAK  179 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~  179 (297)
                      |..+-+..+.+.  --+.|.-+.|..|.-+ |.....|+.|.+|++...+-...+......+.++.|||||+. |.+...
T Consensus        35 d~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF  112 (447)
T KOG4497|consen   35 DSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEF  112 (447)
T ss_pred             ccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecc
Confidence            444444333332  2345677889888755 455677889999999988877888888889999999999965 556678


Q ss_pred             CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC------------------------ccc
Q psy3337         180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP------------------------LAQ  235 (297)
Q Consensus       180 d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~------------------------~~~  235 (297)
                      |-.|.+|.+.+.+.... . |...         ....++|+|||++.+.++..                        .-.
T Consensus       113 ~lriTVWSL~t~~~~~~-~-~pK~---------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl  181 (447)
T KOG4497|consen  113 DLRITVWSLNTQKGYLL-P-HPKT---------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL  181 (447)
T ss_pred             eeEEEEEEeccceeEEe-c-cccc---------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence            99999999976544321 1 1100         01225566777665555431                        000


Q ss_pred             c----cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         236 N----KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       236 ~----g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +    ..+++.+.+||..-.-.+..+...-.+..+.|+|.+++|++|+. |+.++|.+--+-
T Consensus       182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy-D~~lrvlnh~tW  242 (447)
T KOG4497|consen  182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY-DQMLRVLNHFTW  242 (447)
T ss_pred             cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc-chhhhhhceeee
Confidence            1    12345666777543333334444445899999999999999999 999998764443

>KOG4190|consensus

Probab=99.11  E-value=2.9e-10  Score=97.37  Aligned_cols=170  Identities=21%  Similarity=0.249  Sum_probs=123.4

Q ss_pred             EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-------CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCc
Q psy3337         110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-------MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK  182 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~  182 (297)
                      ..+. ||...|..++--.+.+-+++++.|.+|++|.++.       ..+..+++.|..+|.++.|-.+-+++++  .|+-
T Consensus       729 ~nf~-GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  729 CNFT-GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eccc-CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            4455 9999998887776778899999999999999852       2366788999999999999988877765  5788


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec----
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE----  258 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~----  258 (297)
                      |++||.--+.++..+......+..-.+.+     + -+-+...+...       .+...+++++|.+.++-...++    
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikc-----l-~nv~~~iliAg-------csaeSTVKl~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKC-----L-ENVDRHILIAG-------CSAESTVKLFDARSCEWTCELKVCNA  872 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEe-----c-ccCcchheeee-------ccchhhheeeecccccceeeEEeccC
Confidence            99999877777664443221111111100     0 01122222221       2568899999999976555543    


Q ss_pred             -cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         259 -MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       259 -~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       ++.. ++++++.+.|++++++-. .|.|.+.|.++|+.+
T Consensus       873 ~~Pna~~R~iaVa~~GN~lAa~LS-nGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  873 PGPNALTRAIAVADKGNKLAAALS-NGCIAILDARNGKVI  911 (1034)
T ss_pred             CCCchheeEEEeccCcchhhHHhc-CCcEEEEecCCCcee
Confidence             2334 899999999999999999 999999999999864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.11  E-value=1.3e-08  Score=87.31  Aligned_cols=144  Identities=15%  Similarity=0.102  Sum_probs=102.6

Q ss_pred             EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEee
Q psy3337         133 VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRC  212 (297)
Q Consensus       133 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  212 (297)
                      ++-..++.|.+.|..+.+.+..+......-..+.|+||++++++++.|+.|.++|+.+.+.+.++....           
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-----------   78 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-----------   78 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-----------
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-----------
Confidence            466678999999999999999997655444567899999999999999999999999999988886432           


Q ss_pred             eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC--------CCeEEEEEcCCCCEEEEEecCCCe
Q psy3337         213 RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK--------ESLSALAVRDDGRFVAVGTMFTGS  284 (297)
Q Consensus       213 ~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~--------~~v~~~~~s~dg~~l~~~~~~dg~  284 (297)
                      .-..+++++||++++++..       ..+.+.++|..+.+++..+...        ..+.++..+|....++..-...+.
T Consensus        79 ~~~~i~~s~DG~~~~v~n~-------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~  151 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANY-------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE  151 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEE-------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred             CcceEEEcCCCCEEEEEec-------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence            1123778999999988643       5789999999999988877543        237788888888855555441588


Q ss_pred             EEEEEeCCce
Q psy3337         285 VFVYIAFSLQ  294 (297)
Q Consensus       285 i~vwd~~~~~  294 (297)
                      |.+.|....+
T Consensus       152 I~vVdy~d~~  161 (369)
T PF02239_consen  152 IWVVDYSDPK  161 (369)
T ss_dssp             EEEEETTTSS
T ss_pred             EEEEEecccc
Confidence            8888866543

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=2.5e-07  Score=89.61  Aligned_cols=165  Identities=8%  Similarity=-0.014  Sum_probs=107.5

Q ss_pred             EEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccc---------------cCCeeEEEEccCCCEEE-EEeCCCcE
Q psy3337         121 RVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH---------------SKEIDDVDFSISGEQIV-SIAKDGKA  183 (297)
Q Consensus       121 ~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~-s~~~d~~v  183 (297)
                      ..++|+| ++.++++...++.|++||..++... .+.+.               -.....++|+|++..|+ +-+.++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5799999 5667778888899999998776532 22111               12356799999988554 55567899


Q ss_pred             EEEEcCCCceeeeeeccC--CC---------CceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc
Q psy3337         184 FVWNSKNGSLSKELKWNT--PD---------NIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR  252 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~  252 (297)
                      ++||+.++.......+..  +.         +.........-..++++++|..+++-.        .++.|++||..++.
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs--------~N~rIrviD~~tg~  836 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS--------YNHKIKKLDPATKR  836 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC--------CCCEEEEEECCCCe
Confidence            999998765321111000  00         000000000112477889987655533        48999999998776


Q ss_pred             eEEEecc-------------C-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         253 LRLAREM-------------K-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       253 ~~~~~~~-------------~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .......             . .....++++++|+.+++-+. ++.|++||+.+++.
T Consensus       837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-Nn~Irvid~~~~~~  892 (1057)
T PLN02919        837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-NSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-CCEEEEEECCCCcc
Confidence            5533211             0 13678999999998888888 99999999988754

>KOG2695|consensus

Probab=99.10  E-value=6.4e-10  Score=89.95  Aligned_cols=156  Identities=13%  Similarity=0.192  Sum_probs=113.9

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC-----eeeEEeccccCCeeEEEEc
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM-----KPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s  168 (297)
                      .+..+-+ +.++|.. +.+  ...+.|.++.|...+++++.|...|.|..+|++..     .+...+. |...|+++..-
T Consensus       232 ~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~L  307 (425)
T KOG2695|consen  232 LSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQIL  307 (425)
T ss_pred             ccceeEEEEeecccc-ccc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhh
Confidence            3444555 7666632 223  45667889999988999999999999999999754     3444454 88899999876


Q ss_pred             c-CCCEEEEEeCCCcEEEEEcCCCce---eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         169 I-SGEQIVSIAKDGKAFVWNSKNGSL---SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       169 p-~~~~l~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      . ++.+|++++.+|+|++||++--++   +..+.+|........        +-..+....+++++        +|...+
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~--------~~v~~eeg~I~s~G--------dDcytR  371 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP--------AHVKEEEGSIFSVG--------DDCYTR  371 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccc--------cccccccceEEEcc--------CeeEEE
Confidence            6 788999999999999999986555   888888753221111        22466666777744        499999


Q ss_pred             EEeCCCCceEEEeccCCC-----eEEEEEcC
Q psy3337         245 QWDVDSGRLRLAREMKES-----LSALAVRD  270 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~-----v~~~~~s~  270 (297)
                      +|.++.|+++.+++-...     +.+++|..
T Consensus       372 iWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  372 IWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EEecccCceeeccCCCCccccccccceehhc
Confidence            999999999988765432     56666643

>KOG4497|consensus

Probab=99.09  E-value=1.3e-08  Score=81.98  Aligned_cols=193  Identities=14%  Similarity=0.148  Sum_probs=130.0

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeE-----------Eec--
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLL-----------HIE--  156 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~-----------~~~--  156 (297)
                      ....|+.|.+ ++...+....+. ...+.+.+++|||||+ .|.+...|-.|.+|.+.+.+...           .|.  
T Consensus        66 ~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   66 VAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPD  144 (447)
T ss_pred             eeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCC
Confidence            5566778888 777777777777 5666788999999995 55677778899999864332110           000  


Q ss_pred             --------------------------------------------------------------cc-cCCeeEEEEccCCCE
Q psy3337         157 --------------------------------------------------------------AH-SKEIDDVDFSISGEQ  173 (297)
Q Consensus       157 --------------------------------------------------------------~~-~~~v~~~~~sp~~~~  173 (297)
                                                                                    -| .-.+..++|+|.+++
T Consensus       145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQF  224 (447)
T ss_pred             CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccce
Confidence                                                                          01 123567788888889


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeee-----------------------------eccCCC--------C-c----------
Q psy3337         174 IVSIAKDGKAFVWNSKNGSLSKEL-----------------------------KWNTPD--------N-I----------  205 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~~~~~~~~~-----------------------------~~~~~~--------~-~----------  205 (297)
                      |+.|+.|+.+++.+--+-++..++                             ....++        . .          
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            999999998887543221111100                             000000        0 0          


Q ss_pred             --------eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEE
Q psy3337         206 --------KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAV  277 (297)
Q Consensus       206 --------~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  277 (297)
                              ...-..+.++.++|++|..++++...      ..-+.+.+||++..+....+.....|+...|.|....|+.
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd------~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~v  378 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND------KYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVV  378 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecC------CCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEE
Confidence                    00011234567999999999998753      4457899999998887777776677999999999888888


Q ss_pred             EecCCCeEEEEEeCC
Q psy3337         278 GTMFTGSVFVYIAFS  292 (297)
Q Consensus       278 ~~~~dg~i~vwd~~~  292 (297)
                      +.. ..++++|...-
T Consensus       379 ctg-~srLY~W~psg  392 (447)
T KOG4497|consen  379 CTG-KSRLYFWAPSG  392 (447)
T ss_pred             EcC-CceEEEEcCCC
Confidence            887 88899997643

>KOG0280|consensus

Probab=99.08  E-value=1.2e-08  Score=80.95  Aligned_cols=165  Identities=15%  Similarity=0.128  Sum_probs=112.4

Q ss_pred             EEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCC-CCeeeEE-eccccCCeeEEEEcc-CCCEEEEEeCCCcEEEE
Q psy3337         111 TVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFP-KMKPLLH-IEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       111 ~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lw  186 (297)
                      ... .|+-.++...|+. +.+.+.+|+.|+.+..||++ .++.+.. .+-|...|.++.-+| .+.++++|+.|-.|++|
T Consensus       160 ~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  160 TWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             ccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence            455 8999999999987 44789999999999999998 3444433 556888999999887 67899999999999999


Q ss_pred             EcC-CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe--EEEEeccCcccccCCCCeEEEEeCCC--Cc---eEEEec
Q psy3337         187 NSK-NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS--RLFTLANPLAQNKRGISYVQQWDVDS--GR---LRLARE  258 (297)
Q Consensus       187 d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~~~~~~g~~d~~i~~wd~~~--~~---~~~~~~  258 (297)
                      |.+ -++++..-...           ..++.+..+|.-.  .++++.         -.-.++-+...  .+   ......
T Consensus       239 DtRnm~kPl~~~~v~-----------GGVWRi~~~p~~~~~lL~~CM---------h~G~ki~~~~~~~~e~~~~~~s~~  298 (339)
T KOG0280|consen  239 DTRNMGKPLFKAKVG-----------GGVWRIKHHPEIFHRLLAACM---------HNGAKILDSSDKVLEFQIVLPSDK  298 (339)
T ss_pred             ehhcccCccccCccc-----------cceEEEEecchhhhHHHHHHH---------hcCceEEEecccccchheeeeccc
Confidence            998 35555433211           2344566666533  222221         23444555443  22   333445


Q ss_pred             cCCC-eEEEEEcCCCCEEEEEecCCCeEE-EEEeCCceec
Q psy3337         259 MKES-LSALAVRDDGRFVAVGTMFTGSVF-VYIAFSLQMC  296 (297)
Q Consensus       259 ~~~~-v~~~~~s~dg~~l~~~~~~dg~i~-vwd~~~~~~~  296 (297)
                      .|.. .+.-.|..-..+|++++.+|..++ +|-.-++.+.
T Consensus       299 ~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~t  338 (339)
T KOG0280|consen  299 IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEPT  338 (339)
T ss_pred             cccceeeccccccccceeeeeeccccceeeeeeeccCCcC
Confidence            5555 666667444567898887799866 9988777654

>KOG3914|consensus

Probab=99.08  E-value=7.3e-10  Score=91.19  Aligned_cols=105  Identities=13%  Similarity=0.202  Sum_probs=81.6

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe-ccccCCeeEEEEcc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVDFSI  169 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp  169 (297)
                      ..++...+.+ ....+.+...+  ||...++.++|+||+++++++..|..|++-....--.+..| .+|+..|..++.-+
T Consensus       127 kagD~~~~di~s~~~~~~~~~l--GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~  204 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCEPIL--GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD  204 (390)
T ss_pred             ecCCceeeeeecccccCcchhh--hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence            3444444555 33334444343  99999999999999999999999999999887655444444 47999999999976


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      + ..|++++.|++|++||+.+|+.+.++..
T Consensus       205 ~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  205 N-YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             C-ceeeecCCCCcEEEEecccCCcccccch
Confidence            5 4589999999999999999998877654

>KOG0974|consensus

Probab=99.07  E-value=1.7e-09  Score=98.64  Aligned_cols=138  Identities=17%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             CCCCCceEEEEeeCCCeEEE-EecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE-EeccccCCeeEEEEcc
Q psy3337          92 IDSKEKNLRFGFKTFDSVQT-VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL-HIEAHSKEIDDVDFSI  169 (297)
Q Consensus        92 ~~~~d~~i~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp  169 (297)
                      +++--+.|.+|......... +. ||++.|..+.|+-||+++++.+.|.++++|++.+.+... ..-+|+..|+.+.|.|
T Consensus       150 ~gsv~~~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~  228 (967)
T KOG0974|consen  150 SGSVFGEIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP  228 (967)
T ss_pred             eccccccEEEEeccccCCcceec-ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence            45555556663222222222 44 999999999999999999999999999999999887665 6668999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .  .+++++.|.+.++|+. .+..+..+..|...         .++.+...++...+++        +..|+.+++||+.
T Consensus       229 n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~---------~iw~~~~~~~~~~~vT--------~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  229 N--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGK---------GIWKIAVPIGVIIKVT--------GGNDSTLKLWDLN  288 (967)
T ss_pred             c--eeEEeccceEEEEEec-ccceehhhhhhhhc---------ceeEEEEcCCceEEEe--------eccCcchhhhhhh
Confidence            8  9999999999999975 45555566666422         1234556777777777        4459999999986


Q ss_pred             C
Q psy3337         250 S  250 (297)
Q Consensus       250 ~  250 (297)
                      .
T Consensus       289 ~  289 (967)
T KOG0974|consen  289 G  289 (967)
T ss_pred             c
Confidence            4

>KOG2315|consensus

Probab=99.06  E-value=2.9e-08  Score=85.20  Aligned_cols=150  Identities=15%  Similarity=0.209  Sum_probs=108.7

Q ss_pred             EEEEecCCC-EEE--EEcCC---------CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEE--eCCCcEEEEE
Q psy3337         122 VVRLSRNGD-LMV--TGGTD---------GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSI--AKDGKAFVWN  187 (297)
Q Consensus       122 ~~~~s~~g~-~l~--s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~--~~d~~v~lwd  187 (297)
                      .+.|++-|. +|+  +..-|         .++++.+++..+....+. ..++|.++.|+|+++.|+++  -.-.++.+||
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            566777664 222  33233         357777777334444443 47899999999999877654  4567899999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEE
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALA  267 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~  267 (297)
                      ++ +.++..+.. .|.           +.+-|+|.|++++.++.     |...|.+-+||+.+.+++..+..... +-+.
T Consensus       301 lr-~~~v~df~e-gpR-----------N~~~fnp~g~ii~lAGF-----GNL~G~mEvwDv~n~K~i~~~~a~~t-t~~e  361 (566)
T KOG2315|consen  301 LR-GKPVFDFPE-GPR-----------NTAFFNPHGNIILLAGF-----GNLPGDMEVWDVPNRKLIAKFKAANT-TVFE  361 (566)
T ss_pred             CC-CCEeEeCCC-CCc-----------cceEECCCCCEEEEeec-----CCCCCceEEEeccchhhccccccCCc-eEEE
Confidence            84 455555421 121           23558999999999999     88899999999999888888876553 5579


Q ss_pred             EcCCCCEEEEEecC-----CCeEEEEEeC
Q psy3337         268 VRDDGRFVAVGTMF-----TGSVFVYIAF  291 (297)
Q Consensus       268 ~s~dg~~l~~~~~~-----dg~i~vwd~~  291 (297)
                      |+|||.+|++++..     |+.++||+..
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999988742     6789999973

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.06  E-value=7.7e-08  Score=76.47  Aligned_cols=166  Identities=16%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc-------ccCCeeEEEEccC------CCEEEEEeCCCcEEEE
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA-------HSKEIDDVDFSIS------GEQIVSIAKDGKAFVW  186 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~sp~------~~~l~s~~~d~~v~lw  186 (297)
                      =.-++||||+..||.+...|+|++||+.. ..+..+..       -...|..+.|-+-      ...|+.-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            35799999999999999999999999864 33333332       1245677777542      2245666677777766


Q ss_pred             EcCC-----Cceeeeeec--cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc---ccCCCCeEEEEeCCCCce---
Q psy3337         187 NSKN-----GSLSKELKW--NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ---NKRGISYVQQWDVDSGRL---  253 (297)
Q Consensus       187 d~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~---~g~~d~~i~~wd~~~~~~---  253 (297)
                      -+..     .+..+.+..  |-|         ..++.+.++|..+.|+..+...--   +-..+.-+..|.+-++.+   
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp---------~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk  195 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYP---------HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK  195 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCC---------CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence            6532     222233221  212         234456778887777765432000   001122345554332110   


Q ss_pred             ------------------EE-----Ee--cc--CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         254 ------------------RL-----AR--EM--KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       254 ------------------~~-----~~--~~--~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                                        .+     .+  ..  .+.|..|.+||||..|++.+. +|.|.+|++.+.+++
T Consensus       196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~-sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF-SGSLSLWEIPSLRLQ  264 (282)
T ss_pred             EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc-CCeEEEEecCcchhh
Confidence                              00     01  12  223999999999999999999 999999999988765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=1.3e-07  Score=82.82  Aligned_cols=181  Identities=12%  Similarity=0.055  Sum_probs=110.1

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEE-EcC--CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVT-GGT--DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      ...|++ ++.+++.....  ...+......|+|||+.|+. .+.  +..|+++|+.+++. ..+..+........|+|||
T Consensus       212 ~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG  288 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDD  288 (419)
T ss_pred             CCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCC
Confidence            345666 77776654433  34455567889999987664 333  35688888877763 4454444434567899999


Q ss_pred             CEEEEEeC-CC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc-cCCCCeEEEEe
Q psy3337         172 EQIVSIAK-DG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN-KRGISYVQQWD  247 (297)
Q Consensus       172 ~~l~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~-g~~d~~i~~wd  247 (297)
                      +.|+..+. .+  .|+++|+.+++...... ..    ..        ...|+|||+.|+.+....-.. +.....|.+.|
T Consensus       289 ~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g----~~--------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d  355 (419)
T PRK04043        289 KRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HG----KN--------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS  355 (419)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEeCcc-CC----Cc--------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence            87776553 33  57778887765533221 11    00        135899999998876510000 00114789999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC--eEEEEEeCCc
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--SVFVYIAFSL  293 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg--~i~vwd~~~~  293 (297)
                      +.++.... +..........|+|||+.|+..+...+  .+.+.++...
T Consensus       356 ~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        356 TNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            98876543 333333446899999998877664122  3666666543

>KOG1064|consensus

Probab=99.04  E-value=9.8e-10  Score=105.20  Aligned_cols=173  Identities=17%  Similarity=0.271  Sum_probs=135.7

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      .+|+.|+.+++ ....++.+..+...-.+.|+.+.|+.+|+.+..+..||.+.+|... .++....++|.....++.|-.
T Consensus      2224 ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG 2302 (2439)
T ss_pred             EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee
Confidence            48999999999 6777777777774444899999999999999999999999999976 777888999999999999975


Q ss_pred             CCCEEEEEe---CCCcEEEEEcCCC---ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         170 SGEQIVSIA---KDGKAFVWNSKNG---SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       170 ~~~~l~s~~---~d~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                        ..+++++   .++.+.+||..-.   ..+.  ..|..          ....+++-|..+.|++        |+.+|.|
T Consensus      2303 --s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~----------gaT~l~~~P~~qllis--------ggr~G~v 2360 (2439)
T KOG1064|consen 2303 --SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG----------GATVLAYAPKHQLLIS--------GGRKGEV 2360 (2439)
T ss_pred             --hhhhccccCCCCCcccchhcccCcccceee--eecCC----------CceEEEEcCcceEEEe--------cCCcCcE
Confidence              5677664   4688999996421   1222  33321          2234667888888888        6779999


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++||++..+++..++.        +. ...++++|+. .|.++||++.....+
T Consensus      2361 ~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss-~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LD-TREYFVTGSS-EGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             EEeehHHHHHHHHhhh--------hh-hhheeeccCc-ccceEEEEccccchh
Confidence            9999998887777654        44 5678999999 999999998765443

>KOG2315|consensus

Probab=99.02  E-value=1.3e-08  Score=87.28  Aligned_cols=137  Identities=19%  Similarity=0.213  Sum_probs=101.3

Q ss_pred             CCCCcEEEEEEecCCCEEEEE--cCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC---CcEEEEEcC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTG--GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD---GKAFVWNSK  189 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---~~v~lwd~~  189 (297)
                      ...++|+++.|+|+|+.++.+  -.=..+.|||++ +.++..+  ..++-+++-|+|.|++++.++.+   |.|-+||+.
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            458899999999999877654  456689999975 5666665  45677899999999999998875   789999999


Q ss_pred             CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC-cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEE
Q psy3337         190 NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP-LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAV  268 (297)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~  268 (297)
                      +.+++..+....    .        ..+.|+|||.+++++.-. .   -..|+.++||+.. |..+....-......+.|
T Consensus       345 n~K~i~~~~a~~----t--------t~~eW~PdGe~flTATTaPR---lrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W  408 (566)
T KOG2315|consen  345 NRKLIAKFKAAN----T--------TVFEWSPDGEYFLTATTAPR---LRVDNGIKIWHYT-GSLLHEKMFKSELLQVEW  408 (566)
T ss_pred             chhhccccccCC----c--------eEEEEcCCCcEEEEEecccc---EEecCCeEEEEec-CceeehhhhhHhHhheee
Confidence            888887775432    1        126799999999997641 0   1258899999998 555544333224666777


Q ss_pred             cC
Q psy3337         269 RD  270 (297)
Q Consensus       269 s~  270 (297)
                      -|
T Consensus       409 ~P  410 (566)
T KOG2315|consen  409 RP  410 (566)
T ss_pred             ee
Confidence            65

>KOG1409|consensus

Probab=98.98  E-value=3.9e-09  Score=85.41  Aligned_cols=188  Identities=16%  Similarity=0.250  Sum_probs=114.7

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-eeEEeccccCCeeEEEEccCCCEEEEEeCC
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-PLLHIEAHSKEIDDVDFSISGEQIVSIAKD  180 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  180 (297)
                      ....-..+.++. +|.+.+++++|.|....|++|..|..|.+||+--.+ ....+.+|...|..+..-+--+.+++++.|
T Consensus       183 ~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed  261 (404)
T KOG1409|consen  183 EQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGED  261 (404)
T ss_pred             eecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence            334445566666 999999999999999999999999999999996443 456788999999999998888899999999


Q ss_pred             CcEEEEEcCCCceeee--ee------ccCCCC---------c--eEEEEeee-e-eeeee--CCCCeEEEEeccCccccc
Q psy3337         181 GKAFVWNSKNGSLSKE--LK------WNTPDN---------I--KYLFKRCR-Y-GLVED--SPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       181 ~~v~lwd~~~~~~~~~--~~------~~~~~~---------~--~~~~~~~~-~-~~~~~--s~~~~~l~~~~~~~~~~g  237 (297)
                      |.|.+|++........  +.      .+.|-.         .  .....-++ . ..++.  +.+.....+.+..+-+.-
T Consensus       262 g~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~  341 (404)
T KOG1409|consen  262 GGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRV  341 (404)
T ss_pred             CeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEE
Confidence            9999999864321100  00      000000         0  00000000 0 00000  111111122211000001


Q ss_pred             CCCCeEEEEeCCCCceEEEe-ccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         238 RGISYVQQWDVDSGRLRLAR-EMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..+..-.++|... .++..+ +.+..|+.+.+..+-.+|++++. |..|+|||+++
T Consensus       342 ~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~-~Rvi~iwd~~~  395 (404)
T KOG1409|consen  342 CDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGT-DRVIKIWDVRS  395 (404)
T ss_pred             ecccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCC-ceEEEEEechh
Confidence            1223333444432 223332 23455999999888889999999 99999999875

>KOG1354|consensus

Probab=98.96  E-value=3.9e-08  Score=79.77  Aligned_cols=174  Identities=13%  Similarity=0.218  Sum_probs=111.2

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-----eeEEecccc------------CCeeEEEEccCCC--EEE
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-----PLLHIEAHS------------KEIDDVDFSISGE--QIV  175 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~sp~~~--~l~  175 (297)
                      ...+-|.++.|...|.+|++|..+|.|.++.-....     ....++.|.            ..|..+.|.++++  .++
T Consensus        23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            344568899999999999999999999999743221     223444554            3478899988654  677


Q ss_pred             EEeCCCcEEEEEcCCCceee---------------eeecc--CCCCceEEE---------EeeeeeeeeeCCCCeEEEEe
Q psy3337         176 SIAKDGKAFVWNSKNGSLSK---------------ELKWN--TPDNIKYLF---------KRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       176 s~~~d~~v~lwd~~~~~~~~---------------~~~~~--~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~  229 (297)
                      ..+.|.+|++|-++......               .++.+  .+....+..         +...++++.++.|+..++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            88899999999876322111               11100  011101111         12234567777777766665


Q ss_pred             ccC------------------------------------------cccccCCCCeEEEEeCCCCceE----EEec-----
Q psy3337         230 ANP------------------------------------------LAQNKRGISYVQQWDVDSGRLR----LARE-----  258 (297)
Q Consensus       230 ~~~------------------------------------------~~~~g~~d~~i~~wd~~~~~~~----~~~~-----  258 (297)
                      ...                                          .++-.+..|+|++-|++...+-    ..+.     
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            321                                          3455567899999999852211    0011     


Q ss_pred             -------c-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         259 -------M-KESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       259 -------~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                             . -..|..+.|+++|+++++-..  -+|++||+
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~  300 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDL  300 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEec
Confidence                   0 023788999999999998874  79999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.94  E-value=3.9e-09  Score=59.53  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=36.9

Q ss_pred             CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       149 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      ++++..+.+|...|++++|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4532|consensus

Probab=98.93  E-value=4.7e-07  Score=71.33  Aligned_cols=185  Identities=12%  Similarity=0.014  Sum_probs=116.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-Cee-eE-EeccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-MKP-LL-HIEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~-~~-~~~~~~~~v~~~  165 (297)
                      ....+.|.++++ ++..+-....+. -..-.+.++++++|++++++.+....|..|.+.. ++. +. .....++.-.+.
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h-~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVH-NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceee-ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            445677888888 665543333322 1112378999999999999999999999998853 332 33 233345556788


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeeccCCCCceEEEEeeeeeeeeeCCCCe--EEEEeccCcccccCCCCe
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSL-SKELKWNTPDNIKYLFKRCRYGLVEDSPKRS--RLFTLANPLAQNKRGISY  242 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~~~~~~g~~d~~  242 (297)
                      .|+.....+|++..||++.|||++.-.. ........|.. .-.     +..+.|++-|.  .|+...        .-+.
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~h-nGa-----~R~c~Fsl~g~lDLLf~sE--------hfs~  275 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHH-NGA-----FRVCRFSLYGLLDLLFISE--------HFSR  275 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCC-CCc-----eEEEEecCCCcceEEEEec--------Ccce
Confidence            9999999999999999999999985433 22222222221 222     33344565443  222222        2578


Q ss_pred             EEEEeCCCCceEEEec--------cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         243 VQQWDVDSGRLRLARE--------MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~--------~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      +.+.|++++.-...+.        .... |....|+.++..+.+.++  -.+.=|++.
T Consensus       276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e--~~~ae~ni~  331 (344)
T KOG4532|consen  276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE--LQGAEYNIL  331 (344)
T ss_pred             EEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc--hhhheeecc
Confidence            9999999965443321        1123 778888888777776664  234444443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=3.8e-09  Score=59.58  Aligned_cols=38  Identities=29%  Similarity=0.641  Sum_probs=35.7

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEe
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWS  145 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  145 (297)
                      +++.++. +|...|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5677888 9999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314|consensus

Probab=98.91  E-value=4.4e-08  Score=84.14  Aligned_cols=159  Identities=18%  Similarity=0.249  Sum_probs=116.1

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC-----------CCcEEEEEc
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK-----------DGKAFVWNS  188 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-----------d~~v~lwd~  188 (297)
                      =+-+.|||-|.+|+|-...| |.+|--.+...++.|. |. .|.-+.|||..+||++-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35789999999999987666 8899766666666664 65 4899999999999998543           257999999


Q ss_pred             CCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CCeEEEE
Q psy3337         189 KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ESLSALA  267 (297)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~v~~~~  267 (297)
                      ++|.....+.....   .+..    +..+.||.|+++++....         ..|.||+..+..++..-... +.|....
T Consensus       290 ~tG~lkrsF~~~~~---~~~~----WP~frWS~DdKy~Arm~~---------~sisIyEtpsf~lld~Kslki~gIr~Fs  353 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKS---PYLK----WPIFRWSHDDKYFARMTG---------NSISIYETPSFMLLDKKSLKISGIRDFS  353 (698)
T ss_pred             cccchhcceeccCC---Cccc----cceEEeccCCceeEEecc---------ceEEEEecCceeeecccccCCccccCcc
Confidence            99998888764211   1111    123679999999998764         68999998875444333322 3489999


Q ss_pred             EcCCCCEEEEEecCC----CeEEEEEeCCceecC
Q psy3337         268 VRDDGRFVAVGTMFT----GSVFVYIAFSLQMCR  297 (297)
Q Consensus       268 ~s~dg~~l~~~~~~d----g~i~vwd~~~~~~~~  297 (297)
                      |+|.+..||--+...    .++.+..+.+++.||
T Consensus       354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iR  387 (698)
T KOG2314|consen  354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIR  387 (698)
T ss_pred             cCCCcceEEEEcccccCCcceEEEEecCccceee
Confidence            999999998766521    356777777766553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.90  E-value=6.8e-07  Score=73.11  Aligned_cols=182  Identities=14%  Similarity=0.149  Sum_probs=120.1

Q ss_pred             EeeCCCeEEEEecCCCC--cEEEEEEecCCCEEEEEc-----CCCcEEEEeCC-CCeeeEEeccccCCeeEEEEccCCCE
Q psy3337         102 GFKTFDSVQTVFAGSES--LQRVVRLSRNGDLMVTGG-----TDGHLRLWSFP-KMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~-----~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      |..+++..+.+. ...+  .--...||+||++|++.-     ..|.|-|||.. +.+.+.++..|.-.-..+.+.||+..
T Consensus        34 D~~~g~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~t  112 (305)
T PF07433_consen   34 DCRTGQLLQRLW-APPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGET  112 (305)
T ss_pred             EcCCCceeeEEc-CCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCE
Confidence            888888887765 2222  122567999999999864     45789999998 67788899988888889999999987


Q ss_pred             EEEEeC------------------CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         174 IVSIAK------------------DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       174 l~s~~~------------------d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      |+.+-.                  +..+...|..+|+.+.........      ....+..+++.++|..++....    
T Consensus       113 LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~------~~lSiRHLa~~~~G~V~~a~Q~----  182 (305)
T PF07433_consen  113 LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL------HQLSIRHLAVDGDGTVAFAMQY----  182 (305)
T ss_pred             EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc------cccceeeEEecCCCcEEEEEec----
Confidence            776521                  234555666777766654332111      1122345778888877666544    


Q ss_pred             ccC---CCCeEEEEeCCCCceEEEecc--------CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         236 NKR---GISYVQQWDVDSGRLRLAREM--------KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       236 ~g~---~d~~i~~wd~~~~~~~~~~~~--------~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .|.   .-.-|.+++..  +.+..+..        ...+-+|+++++|.++++.+...+.+.+||..+++.+
T Consensus       183 qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  183 QGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             CCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence            111   11123333332  22222222        2338999999999988777765889999999998875

>KOG1064|consensus

Probab=98.90  E-value=1.5e-08  Score=97.42  Aligned_cols=160  Identities=16%  Similarity=0.229  Sum_probs=122.4

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      .+-..|.++.=+|...+.+||+.||.|++|....+..+..++ .-...|+.+.|+.+|+.+..+..||.+.+|.+. .++
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence            455667788888888899999999999999988887776654 223789999999999999999999999999975 455


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-C--ceEEEeccCCC-eEEEEEc
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-G--RLRLAREMKES-LSALAVR  269 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~--~~~~~~~~~~~-v~~~~~s  269 (297)
                      ....+.|......+.|          -  +..+++.+.     .++++.+.+||..- +  -++.  ..|.. ++++++-
T Consensus      2285 ~~s~qchnk~~~Df~F----------i--~s~~~tag~-----s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRF----------I--GSLLATAGR-----SSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYA 2345 (2439)
T ss_pred             eeccccCCccccceee----------e--ehhhhcccc-----CCCCCcccchhcccCcccceee--eecCCCceEEEEc
Confidence            5555555422212222          1  144666655     67889999999754 2  2333  55655 9999999


Q ss_pred             CCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         270 DDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |....|++|+. +|.|++||++..+.
T Consensus      2346 P~~qllisggr-~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2346 PKHQLLISGGR-KGEVCLFDIRQRQL 2370 (2439)
T ss_pred             CcceEEEecCC-cCcEEEeehHHHHH
Confidence            99999999999 99999999987654

>KOG0280|consensus

Probab=98.90  E-value=5.7e-08  Score=77.25  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=98.1

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCe--eeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCC-Cceee
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK--PLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKN-GSLSK  195 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~-~~~~~  195 (297)
                      ..++.|++.+..++++..+|.+.+-+.....  .++.++.|..+.+-..|+- +.+++++|+.|+.+..||++. ++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            3577899999899999999999866655443  3458899999999999976 456889999999999999983 22222


Q ss_pred             e-eeccCCCCceEEEEeeeeeeeee-CCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCCeEEEEEcCC
Q psy3337         196 E-LKWNTPDNIKYLFKRCRYGLVED-SPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKESLSALAVRDD  271 (297)
Q Consensus       196 ~-~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~v~~~~~s~d  271 (297)
                      . .+.|.          ..+.++.- .|.+.++++        |+.|-.|++||.++ ++++..-...+.|+.+.++|.
T Consensus       204 ~n~kvH~----------~GV~SI~ss~~~~~~I~T--------GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  204 HNSKVHT----------SGVVSIYSSPPKPTYIAT--------GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             ecceeee----------cceEEEecCCCCCceEEE--------eccccceeeeehhcccCccccCccccceEEEEecch
Confidence            1 12221          11112222 355777888        66799999999995 888877666677999999983

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.89  E-value=2.5e-06  Score=73.18  Aligned_cols=186  Identities=15%  Similarity=0.115  Sum_probs=115.7

Q ss_pred             ceEEE-Ee--eCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC----CCcEEEEeCCC--Ce--eeEEeccccCCeeEE
Q psy3337          97 KNLRF-GF--KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT----DGHLRLWSFPK--MK--PLLHIEAHSKEIDDV  165 (297)
Q Consensus        97 ~~i~~-~~--~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----d~~i~iwd~~~--~~--~~~~~~~~~~~v~~~  165 (297)
                      +.|.+ .+  .+++....-..........++++|++++|.+...    ++.|..|++..  ++  .+............+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            45665 44  5554322211112233457889999999988866    56898888764  33  333443344566789


Q ss_pred             EEccCCCEEEEEe-CCCcEEEEEcCC-Cceeee---ee--ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         166 DFSISGEQIVSIA-KDGKAFVWNSKN-GSLSKE---LK--WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       166 ~~sp~~~~l~s~~-~d~~v~lwd~~~-~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      +++|++++|+++. .+|.|.++++.. |.....   +.  +..|.....  .......+.++|+++++++...     | 
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq--~~~h~H~v~~~pdg~~v~v~dl-----G-  164 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ--EGPHPHQVVFSPDGRFVYVPDL-----G-  164 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT--SSTCEEEEEE-TTSSEEEEEET-----T-
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccc--ccccceeEEECCCCCEEEEEec-----C-
Confidence            9999999999887 489999999986 433222   11  111110000  0011224778999999998765     3 


Q ss_pred             CCCeEEEEeCCCCc--eE--EEe--ccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         239 GISYVQQWDVDSGR--LR--LAR--EMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       239 ~d~~i~~wd~~~~~--~~--~~~--~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                       ...|++|++....  +.  ..+  ......+.+.|+|||+++.+..+.++.|.+|++.
T Consensus       165 -~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  165 -ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             -TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             -CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence             3479999987643  32  222  2334499999999999998887768999999987

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1275|consensus

Probab=98.89  E-value=7.2e-08  Score=87.34  Aligned_cols=172  Identities=20%  Similarity=0.237  Sum_probs=121.2

Q ss_pred             CCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          92 IDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        92 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      .|-.+..+.+|..+.+..+... -..+.|+-++  .+++++++|...|+|.+-|.++.+.+.++.+|++.|.++..  .|
T Consensus       153 Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~G  227 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLNTEKETRTTN-VSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QG  227 (1118)
T ss_pred             cchhhheeeeecccceeeeeee-ccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cC
Confidence            3444556666888877766664 2222344444  46789999999999999999999999999999999987766  58


Q ss_pred             CEEEEEeC---------CCcEEEEEcCCCceeeeeeccC-CCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCC
Q psy3337         172 EQIVSIAK---------DGKAFVWNSKNGSLSKELKWNT-PDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGI  240 (297)
Q Consensus       172 ~~l~s~~~---------d~~v~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d  240 (297)
                      +.|++++.         |..|+|||++.-+.+..+..+. |.            .+.|+|.-. .++.++.        .
T Consensus       228 NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~------------flrf~Psl~t~~~V~S~--------s  287 (1118)
T KOG1275|consen  228 NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ------------FLRFHPSLTTRLAVTSQ--------S  287 (1118)
T ss_pred             CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch------------hhhhcccccceEEEEec--------c
Confidence            89998864         5678999998766655554332 11            144566533 3444333        7


Q ss_pred             CeEEEEeCCC-Cce---EEEeccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         241 SYVQQWDVDS-GRL---RLAREMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       241 ~~i~~wd~~~-~~~---~~~~~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      |...+.|..+ +.+   +..+.... .+.++++|++|..++.|.. +|.|.+|-
T Consensus       288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~-~g~v~~wa  340 (1118)
T KOG1275|consen  288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH-EGHVNLWA  340 (1118)
T ss_pred             cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc-cCcEeeec
Confidence            8888888433 221   12222223 3999999999999999999 99999997

>KOG3914|consensus

Probab=98.89  E-value=3e-08  Score=81.87  Aligned_cols=153  Identities=12%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCee----eEEeccccCCeeEEEEccCCCEEEEEeCCCc---EEEEEcCCCcee
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKP----LLHIEAHSKEIDDVDFSISGEQIVSIAKDGK---AFVWNSKNGSLS  194 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~---v~lwd~~~~~~~  194 (297)
                      .+..+|++++||.+..+....++++.....    +..+ .-...-+++.|..+......+..-|.   +.+|....+.. 
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-  144 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-  144 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-
Confidence            455677788888887777776777653322    1111 12223345555555555554444444   44444433322 


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec-cCCC-eEEEEEcCCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE-MKES-LSALAVRDDG  272 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~-~~~~-v~~~~~s~dg  272 (297)
                      ..+.+|.    .      .+..|+++||.+.|.++..        |..|++-....--.+..+. +|.. |..+++-++ 
T Consensus       145 ~~~lGhv----S------ml~dVavS~D~~~IitaDR--------DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-  205 (390)
T KOG3914|consen  145 EPILGHV----S------MLLDVAVSPDDQFIITADR--------DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-  205 (390)
T ss_pred             chhhhhh----h------hhheeeecCCCCEEEEecC--------CceEEEEecCcccchhhhccccHhheeeeeeccC-
Confidence            2222332    1      2335889999999999655        9999998888755555554 4777 999999865 


Q ss_pred             CEEEEEecCCCeEEEEEeCCceec
Q psy3337         273 RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..|++++. |++|++||+.+|+.+
T Consensus       206 ~~LlS~sG-D~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  206 YLLLSGSG-DKTLRLWDITSGKLL  228 (390)
T ss_pred             ceeeecCC-CCcEEEEecccCCcc
Confidence            55889998 999999999999875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.88  E-value=4.8e-07  Score=76.61  Aligned_cols=151  Identities=18%  Similarity=0.161  Sum_probs=116.3

Q ss_pred             cCCCCcEEEEEEecCCCEEEEEcCCC-cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q psy3337         114 AGSESLQRVVRLSRNGDLMVTGGTDG-HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       114 ~~h~~~v~~~~~s~~g~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~  192 (297)
                      .+|...|.-..+.-+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+|+|++++.+.....+-+.|+.+|.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            37888898888888888999999999 899999888764 4555567789999999999999999888888899999886


Q ss_pred             eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCC
Q psy3337         193 LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDG  272 (297)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg  272 (297)
                      ....-+...    .      -+..+.|||+++.++.+.-    .|-....|+++|+..++..........-.+.+|.|||
T Consensus       435 v~~idkS~~----~------lItdf~~~~nsr~iAYafP----~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~  500 (668)
T COG4946         435 VRLIDKSEY----G------LITDFDWHPNSRWIAYAFP----EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG  500 (668)
T ss_pred             eeEeccccc----c------eeEEEEEcCCceeEEEecC----cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence            532221111    1      1234779999999988654    3556678999999988877665544446788999999


Q ss_pred             CEEEEEe
Q psy3337         273 RFVAVGT  279 (297)
Q Consensus       273 ~~l~~~~  279 (297)
                      ++|..-+
T Consensus       501 ryLYfLs  507 (668)
T COG4946         501 RYLYFLS  507 (668)
T ss_pred             cEEEEEe
Confidence            9886544

>KOG2041|consensus

Probab=98.88  E-value=3.9e-07  Score=80.82  Aligned_cols=224  Identities=16%  Similarity=0.222  Sum_probs=137.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.+....+++++||.|+..++.++...-...    .+.+                                       
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~----~~~g---------------------------------------   54 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDL----NKSG---------------------------------------   54 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcc----cccc---------------------------------------
Confidence            688888889999999999999998886643210    0000                                       


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec--ccc
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE--AHS  159 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~  159 (297)
                              ..          ...+-..-+++. ||.+.|.-+.|+.+.+.|-+...+|.|.+|=+-.+.-...+.  ...
T Consensus        55 --------la----------a~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnK  115 (1189)
T KOG2041|consen   55 --------LA----------AASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNK  115 (1189)
T ss_pred             --------cc----------cccccchhhhhc-cCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCc
Confidence                    00          001112245666 999999999999999999999999999999876654222221  134


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCC---------Cce-------------------------------------
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKN---------GSL-------------------------------------  193 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~---------~~~-------------------------------------  193 (297)
                      +.|.+++|+.||..++..-.||.|.+=.+..         |..                                     
T Consensus       116 SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~  195 (1189)
T KOG2041|consen  116 SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEK  195 (1189)
T ss_pred             cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhh
Confidence            5678888888888777666666554322110         000                                     


Q ss_pred             ----------------eeeeec-cC------CCCceEEE----------------------EeeeeeeeeeCCCCeEEEE
Q psy3337         194 ----------------SKELKW-NT------PDNIKYLF----------------------KRCRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       194 ----------------~~~~~~-~~------~~~~~~~~----------------------~~~~~~~~~~s~~~~~l~~  228 (297)
                                      +..+.+ +.      |+...+.+                      ....+....|+++|..|+.
T Consensus       196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAv  275 (1189)
T KOG2041|consen  196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAV  275 (1189)
T ss_pred             ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEE
Confidence                            000000 00      11101110                      0011223678999999998


Q ss_pred             eccCcccccCCCC-eEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         229 LANPLAQNKRGIS-YVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       229 ~~~~~~~~g~~d~-~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      ++...-+.-..|. .|.+|..- |+.+.+++.++. |++++|-..|-.++.+-  |+.|++=++
T Consensus       276 cG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~Av--dsfiyfanI  336 (1189)
T KOG2041|consen  276 CGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIAV--DSFIYFANI  336 (1189)
T ss_pred             ccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEEe--cceEEEEee
Confidence            8774333333343 55555544 888888888777 99999977777776665  566555444

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.84  E-value=2.9e-06  Score=69.62  Aligned_cols=157  Identities=13%  Similarity=0.175  Sum_probs=108.8

Q ss_pred             EEEEEecCCCEEEEEcC-CCcEEEEeCCC-Ceee--EEeccccCC----------eeEEEEccCCCEEEEEeC-CCcEEE
Q psy3337         121 RVVRLSRNGDLMVTGGT-DGHLRLWSFPK-MKPL--LHIEAHSKE----------IDDVDFSISGEQIVSIAK-DGKAFV  185 (297)
Q Consensus       121 ~~~~~s~~g~~l~s~~~-d~~i~iwd~~~-~~~~--~~~~~~~~~----------v~~~~~sp~~~~l~s~~~-d~~v~l  185 (297)
                      +.++++++|++++++.. -|.|.++-++. |...  ..+..|.+.          +....|.|++++|++.+. --.|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            78999999999988765 57899998864 4322  122335554          889999999999998753 236899


Q ss_pred             EEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-ceEEE--------
Q psy3337         186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-RLRLA--------  256 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~--------  256 (297)
                      |++..|.....-...-+.       .+.-..|.|+|++++.+.+..       .+++|.+|..... ..+..        
T Consensus       172 y~~~dg~L~~~~~~~v~~-------G~GPRHi~FHpn~k~aY~v~E-------L~stV~v~~y~~~~g~~~~lQ~i~tlP  237 (346)
T COG2706         172 YDLDDGKLTPADPAEVKP-------GAGPRHIVFHPNGKYAYLVNE-------LNSTVDVLEYNPAVGKFEELQTIDTLP  237 (346)
T ss_pred             EEcccCccccccccccCC-------CCCcceEEEcCCCcEEEEEec-------cCCEEEEEEEcCCCceEEEeeeeccCc
Confidence            999877543222111111       111224789999999999866       5889999998872 22222        


Q ss_pred             --eccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         257 --REMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       257 --~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                        +.+......+.++|||++|.++..+...|.+|.+.
T Consensus       238 ~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence              22233478899999999999988766678888764

>KOG1832|consensus

Probab=98.80  E-value=7.8e-09  Score=93.24  Aligned_cols=168  Identities=13%  Similarity=0.236  Sum_probs=117.9

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCC--cEEEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG--KAFVW  186 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~--~v~lw  186 (297)
                      .+++. .|+...+|++|+-+.+.|+.|+..|.|++|++.+|.....+.+|...|+-+.-+-+|..+++.+.-.  ...+|
T Consensus      1094 w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             chhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            34555 7888899999999999999999999999999999999999999999999998888888776654332  35577


Q ss_pred             EcC-CCceeeeeeccC----------------CC-CceEEEEee---------------eeeeeeeCCCCeEEEEeccCc
Q psy3337         187 NSK-NGSLSKELKWNT----------------PD-NIKYLFKRC---------------RYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       187 d~~-~~~~~~~~~~~~----------------~~-~~~~~~~~~---------------~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      ++. .+.+.+++....                .+ ...+-...+               .-+...|+|....++.     
T Consensus      1173 ~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln----- 1247 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN----- 1247 (1516)
T ss_pred             ccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-----
Confidence            764 233333332110                00 000000000               0123567888887766     


Q ss_pred             ccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         234 AQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                            ||  .+||++..+.+..|.....-..-.|+|+|.-++.-++      |||+++++.+
T Consensus      1248 ------dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE------IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 ------DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE------IWDMRTFKLL 1296 (1516)
T ss_pred             ------Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech------hhhhHHHHHH
Confidence                  55  3799998777777665444344579999999999998      9999998765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.75  E-value=4.7e-06  Score=67.41  Aligned_cols=187  Identities=17%  Similarity=0.099  Sum_probs=114.6

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe-cccc---CCeeEEEEc
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHS---KEIDDVDFS  168 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~s  168 (297)
                      +.++.|.. +..+|+.+-... . ...+.... ...+..++.+..++.++.+|..+|+.+... ....   .........
T Consensus        43 ~~~~~l~~~d~~tG~~~W~~~-~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~  119 (238)
T PF13360_consen   43 SGDGNLYALDAKTGKVLWRFD-L-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA  119 (238)
T ss_dssp             ETTSEEEEEETTTSEEEEEEE-C-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE
T ss_pred             cCCCEEEEEECCCCCEEEEee-c-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce
Confidence            46677777 989998887776 2 11111111 224556677778889999999999998874 3221   111222333


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCce-EEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIK-YLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      .++..++.+..++.|..+|+++|+.+.......+.... +.........+.+. ++ .++....        ++.+..+|
T Consensus       120 ~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~--------~g~~~~~d  189 (238)
T PF13360_consen  120 VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSG--------DGRVVAVD  189 (238)
T ss_dssp             EETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECC--------TSSEEEEE
T ss_pred             EecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcC--------CCeEEEEE
Confidence            34778888888999999999999998887765433211 11000011122223 44 5555433        55444449


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +.+++.+-... ...+..+ ..+++..|++++. ++.|..||+.+++.+
T Consensus       190 ~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~-~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  190 LATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSS-DGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTTTEEEEEEC-SS-ECEC-EECCCTEEEEEET-TTEEEEEETTTTEEE
T ss_pred             CCCCCEEEEec-CCCccCC-ceeeCCEEEEEeC-CCEEEEEECCCCCEE
Confidence            99998664333 2223331 3467788888888 999999999999864

...

>KOG2041|consensus

Probab=98.74  E-value=4.6e-08  Score=86.51  Aligned_cols=159  Identities=16%  Similarity=0.197  Sum_probs=117.6

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC---------------eeeEEeccccCCeeEEEEccCCCEEEEEeCC
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM---------------KPLLHIEAHSKEIDDVDFSISGEQIVSIAKD  180 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  180 (297)
                      ......|+.|+....++++|+.||.+++..+.+.               ..-+++.+|...|.-+.|+.+.+.|-++..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3445789999999999999999999999987432               1234678999999999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC
Q psy3337         181 GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK  260 (297)
Q Consensus       181 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~  260 (297)
                      |.|.+|-+-.|.....+......  +.      +.+++|+.||..+..+..        ||.|.+=.++..+.... ...
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnK--Sv------V~SmsWn~dG~kIcIvYe--------DGavIVGsvdGNRIwgK-eLk  155 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNK--SV------VVSMSWNLDGTKICIVYE--------DGAVIVGSVDGNRIWGK-ELK  155 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCc--cE------EEEEEEcCCCcEEEEEEc--------cCCEEEEeeccceecch-hcc
Confidence            99999999887655444322210  12      234789999999888665        77776655553222111 111


Q ss_pred             CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         261 ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       261 ~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .. ...+.|++|.+.++.+-. .|.+.++|-+.
T Consensus       156 g~~l~hv~ws~D~~~~Lf~~a-nge~hlydnqg  187 (1189)
T KOG2041|consen  156 GQLLAHVLWSEDLEQALFKKA-NGETHLYDNQG  187 (1189)
T ss_pred             hheccceeecccHHHHHhhhc-CCcEEEecccc
Confidence            11 567899999999988888 99999999653

>KOG1409|consensus

Probab=98.72  E-value=8.3e-07  Score=72.25  Aligned_cols=192  Identities=15%  Similarity=0.192  Sum_probs=133.9

Q ss_pred             CCCCCceEEE--EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC----CCCeeeEEeccccCCeeEE
Q psy3337          92 IDSKEKNLRF--GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF----PKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        92 ~~~~d~~i~~--~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~----~~~~~~~~~~~~~~~v~~~  165 (297)
                      +.+.|.++++  ....++....+...-..+++++.+.++.+.|+.|-..|++.-+.+    +.....+.+..|...|..+
T Consensus        41 ~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~  120 (404)
T KOG1409|consen   41 SVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAI  120 (404)
T ss_pred             EccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeE
Confidence            6778999998  566677766665345667899999999999999999999988865    3445667788899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC---------------------------CCCceEEEE----eeee
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT---------------------------PDNIKYLFK----RCRY  214 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~  214 (297)
                      -|+-....+++.+.|..+.---.+.+..+..+....                           +........    ...+
T Consensus       121 if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~  200 (404)
T KOG1409|consen  121 VFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV  200 (404)
T ss_pred             EecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccce
Confidence            999888899999988766433333333222111000                           000000000    0112


Q ss_pred             eeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc-eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         215 GLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR-LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       215 ~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..++|.|....+++        |..|..+.+||+...+ ....+.+|.. |..+..-+--+.|.+++. ||.|.+|+..-
T Consensus       201 ~~l~Wd~~~~~LfS--------g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~e-dg~i~~w~mn~  271 (404)
T KOG1409|consen  201 TCLKWDPGQRLLFS--------GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGE-DGGIVVWNMNV  271 (404)
T ss_pred             EEEEEcCCCcEEEe--------ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccC-CCeEEEEeccc
Confidence            34667777777777        6669999999998643 2334555555 888888888889999999 99999999764

>KOG1912|consensus

Probab=98.72  E-value=8.6e-07  Score=79.31  Aligned_cols=187  Identities=12%  Similarity=0.162  Sum_probs=131.3

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC------------CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCe
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG------------DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI  162 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  162 (297)
                      ...|.+ |..+.+.++.+. -|...|+.+.|.|-.            -.||++...|.|.+||+..+..+..+..|..++
T Consensus        34 hslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~  112 (1062)
T KOG1912|consen   34 HSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSV  112 (1062)
T ss_pred             CceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcch
Confidence            345666 999999999998 899999999998732            257888889999999999988888899999999


Q ss_pred             eEEEEcc---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeccC---------C-CCceEEE-------------------
Q psy3337         163 DDVDFSI---SG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNT---------P-DNIKYLF-------------------  209 (297)
Q Consensus       163 ~~~~~sp---~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~---------~-~~~~~~~-------------------  209 (297)
                      ..++|-|   +. .+|+.-....++.+|+..+|+.........         | +...+.+                   
T Consensus       113 qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~  192 (1062)
T KOG1912|consen  113 QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD  192 (1062)
T ss_pred             hheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC
Confidence            9999976   34 456666777899999988887654332111         0 0000000                   


Q ss_pred             --------Eee------------------------e----eeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce
Q psy3337         210 --------KRC------------------------R----YGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       210 --------~~~------------------------~----~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                              ...                        .    +..++|+|.-+.++.+..        ...+.++|++-..+
T Consensus       193 ~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--------prellv~dle~~~~  264 (1062)
T KOG1912|consen  193 VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--------PRELLVFDLEYECC  264 (1062)
T ss_pred             CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--------ccceEEEcchhhce
Confidence                    000                        0    001455666555555544        57788999988777


Q ss_pred             EEEeccCCC-eEEEEEcCCCC--EEEEEecCCCeEEEEEeCC
Q psy3337         254 RLAREMKES-LSALAVRDDGR--FVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       254 ~~~~~~~~~-v~~~~~s~dg~--~l~~~~~~dg~i~vwd~~~  292 (297)
                      +....-... +.-+.|-|+++  .|++... ||.+.+|--+.
T Consensus       265 l~vvpier~~akfv~vlP~~~rd~LfclH~-nG~ltirvrk~  305 (1062)
T KOG1912|consen  265 LAVVPIERGGAKFVDVLPDPRRDALFCLHS-NGRLTIRVRKE  305 (1062)
T ss_pred             eEEEEeccCCcceeEeccCCCcceEEEEec-CCeEEEEEeec
Confidence            777665544 66677777654  6899999 99999996543

>KOG2695|consensus

Probab=98.71  E-value=6.5e-08  Score=78.59  Aligned_cols=142  Identities=9%  Similarity=0.078  Sum_probs=99.9

Q ss_pred             EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeccCCCCceE
Q psy3337         133 VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-----SLSKELKWNTPDNIKY  207 (297)
Q Consensus       133 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-----~~~~~~~~~~~~~~~~  207 (297)
                      ++.+.+-.|-+-|++++-. ..|. ..+.|.++.|...++++..|+..|.|..+|++.+     .+.+.+. |       
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h-------  297 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H-------  297 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c-------
Confidence            4555666777888777643 3343 4567999999998999999999999999999864     2222221 2       


Q ss_pred             EEEeeeeeeeeeCC-CCeEEEEeccCcccccCCCCeEEEEeCCCCce---EEEeccCCC---eEEEEEcCCCCEEEEEec
Q psy3337         208 LFKRCRYGLVEDSP-KRSRLFTLANPLAQNKRGISYVQQWDVDSGRL---RLAREMKES---LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       208 ~~~~~~~~~~~~s~-~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~---~~~~~~~~~---v~~~~~s~dg~~l~~~~~  280 (297)
                         ...+.++..-. ++++|++        .+.+|+|.+||++.-++   +..+.+|-.   -.-+-+.+....+++++.
T Consensus       298 ---~Ssvtslq~Lq~s~q~Lma--------S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  298 ---DSSVTSLQILQFSQQKLMA--------SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             ---CcchhhhhhhccccceEee--------ccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence               11122222222 4566766        44599999999998666   888888844   223345667788888999


Q ss_pred             CCCeEEEEEeCCceec
Q psy3337         281 FTGSVFVYIAFSLQMC  296 (297)
Q Consensus       281 ~dg~i~vwd~~~~~~~  296 (297)
                       |...+||.+.+++++
T Consensus       367 -DcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  367 -DCYTRIWSLDSGHLL  381 (425)
T ss_pred             -eeEEEEEecccCcee
Confidence             999999999998875

>KOG4190|consensus

Probab=98.71  E-value=4.5e-08  Score=84.21  Aligned_cols=164  Identities=13%  Similarity=0.117  Sum_probs=104.8

Q ss_pred             eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec--cccCCeeEEEEcc--CCCEEEEE-eCCCc
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE--AHSKEIDDVDFSI--SGEQIVSI-AKDGK  182 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp--~~~~l~s~-~~d~~  182 (297)
                      +..++. .|..+|..+.|-.+-++++++  |+.|.+||.-.++++..+.  ...+.+..+..-|  +...++.+ +...+
T Consensus       776 CQfTY~-aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST  852 (1034)
T KOG4190|consen  776 CQFTYQ-AHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST  852 (1034)
T ss_pred             eeeEhh-hccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh
Confidence            445555 899999999999998888876  7889999987776654332  1223344444444  33444444 67899


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES  262 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~  262 (297)
                      |+++|.+.+.....++.....+..     .....++..|.|+.++.+-        ..|.|.+.|.++|+.+..+..-+-
T Consensus       853 VKl~DaRsce~~~E~kVcna~~Pn-----a~~R~iaVa~~GN~lAa~L--------SnGci~~LDaR~G~vINswrpmec  919 (1034)
T KOG4190|consen  853 VKLFDARSCEWTCELKVCNAPGPN-----ALTRAIAVADKGNKLAAAL--------SNGCIAILDARNGKVINSWRPMEC  919 (1034)
T ss_pred             heeeecccccceeeEEeccCCCCc-----hheeEEEeccCcchhhHHh--------cCCcEEEEecCCCceeccCCcccc
Confidence            999999998877777643211100     1122366788888888744        489999999999998876654332


Q ss_pred             -eEEEEEcCCCCEEEEEecCCCeEEE-EE
Q psy3337         263 -LSALAVRDDGRFVAVGTMFTGSVFV-YI  289 (297)
Q Consensus       263 -v~~~~~s~dg~~l~~~~~~dg~i~v-wd  289 (297)
                       ...++ .|..+.|+.... |.++.| |-
T Consensus       920 dllqla-apsdq~L~~sal-dHslaVnWh  946 (1034)
T KOG4190|consen  920 DLLQLA-APSDQALAQSAL-DHSLAVNWH  946 (1034)
T ss_pred             hhhhhc-CchhHHHHhhcc-cceeEeeeh
Confidence             32222 233344444444 555555 43

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.70  E-value=7.9e-06  Score=67.15  Aligned_cols=168  Identities=13%  Similarity=0.096  Sum_probs=112.5

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCC--CCee--eEEeccccCCeeEEEEccCCCEEEEEeC-CCcEEEE
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFP--KMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAK-DGKAFVW  186 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~--~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~-d~~v~lw  186 (297)
                      .+.+..+-++|+|+.+.|.++-.+   |.|..|.+.  +|+.  +........+.+.+++++++++++++.. .|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            567778899999999999887554   667766664  3543  2222222334488999999999998874 5889999


Q ss_pred             EcCC-Cceeee--eeccC---CCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE----
Q psy3337         187 NSKN-GSLSKE--LKWNT---PDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA----  256 (297)
Q Consensus       187 d~~~-~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~----  256 (297)
                      -++. |.....  +..|.   |....-   ........++|++++|+++..     |.  -.|.+|++..|++...    
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~---~~h~H~a~~tP~~~~l~v~DL-----G~--Dri~~y~~~dg~L~~~~~~~  186 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQE---SPHVHSANFTPDGRYLVVPDL-----GT--DRIFLYDLDDGKLTPADPAE  186 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCcccc---CCccceeeeCCCCCEEEEeec-----CC--ceEEEEEcccCccccccccc
Confidence            8865 433221  11121   110000   001223557999999999876     33  3799999998765432    


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         257 REMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       257 ~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +......+.|.|+|++++..+.++-+++|-+|....
T Consensus       187 v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         187 VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            222233899999999999988776699999999866

>KOG1334|consensus

Probab=98.70  E-value=1.2e-07  Score=80.20  Aligned_cols=188  Identities=11%  Similarity=0.132  Sum_probs=136.8

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCC-CCee--eEEeccccCCee
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFP-KMKP--LLHIEAHSKEID  163 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~-~~~~--~~~~~~~~~~v~  163 (297)
                      ..+++.|..+.+ +...+.....+..||...|....|-|.  .+.+++++.||.|++=.+. ++..  ...+..|.+.|.
T Consensus       157 l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vh  236 (559)
T KOG1334|consen  157 LASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVH  236 (559)
T ss_pred             eeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccc
Confidence            458999999999 777777777777799999999999984  4789999999999987764 3322  345667999999


Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         164 DVDFSISG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       164 ~~~~sp~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      -++.-|+. ..|.+++.|+.+.-+|++.+.+...+....... .   .......++.+|...+.+++       |..|..
T Consensus       237 klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~-~---~~v~L~~Ia~~P~nt~~faV-------gG~dqf  305 (559)
T KOG1334|consen  237 KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE-K---ERVGLYTIAVDPRNTNEFAV-------GGSDQF  305 (559)
T ss_pred             eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC-c---cceeeeeEecCCCCcccccc-------CChhhh
Confidence            99999965 468899999999999999876655444222111 1   01233457778877654443       556899


Q ss_pred             EEEEeCCCCce------EEEec-----cCC--CeEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         243 VQQWDVDSGRL------RLARE-----MKE--SLSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       243 i~~wd~~~~~~------~~~~~-----~~~--~v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      +++||.+.-..      +..+.     ...  .|++++|+.++.-|+++.. |-.|++|.
T Consensus       306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~  364 (559)
T KOG1334|consen  306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFN  364 (559)
T ss_pred             hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEec
Confidence            99999886221      12221     112  2999999998888888888 99999994

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.67  E-value=6.6e-07  Score=71.99  Aligned_cols=163  Identities=13%  Similarity=0.208  Sum_probs=108.5

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe---eeEEecccc-----CCeeEEEEccC-CCEEEEEeCCCcEEE
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK---PLLHIEAHS-----KEIDDVDFSIS-GEQIVSIAKDGKAFV  185 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~sp~-~~~l~s~~~d~~v~l  185 (297)
                      .|.-.|.+++|+.|...++++ .|=.|.+|++....   .+..++.|.     .-|++..|+|. .+.|..++..|.|++
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            688889999999998888886 56789999986432   233444443     45889999994 456777788899999


Q ss_pred             EEcCCCce------eeeeeccCCCCc-eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEe
Q psy3337         186 WNSKNGSL------SKELKWNTPDNI-KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAR  257 (297)
Q Consensus       186 wd~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~  257 (297)
                      -|++....      +...... +... .+.-....+..+.|+++|+++++-.         --++++||++. ..++.++
T Consensus       249 ~DlRq~alcdn~~klfe~~~D-~v~~~ff~eivsSISD~kFs~ngryIlsRd---------yltvkiwDvnm~k~pikTi  318 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTID-GVDVDFFEEIVSSISDFKFSDNGRYILSRD---------YLTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             hhhhhhhhccCchhhhhhccC-cccchhHHHHhhhhcceEEcCCCcEEEEec---------cceEEEEecccccCCceee
Confidence            99984321      1111111 1100 0000112345688999999998844         47999999987 5566666


Q ss_pred             ccCC-------------Ce---EEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         258 EMKE-------------SL---SALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       258 ~~~~-------------~v---~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      ..|.             .|   ..+.||-|...+++|+. ....-+|-
T Consensus       319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy-~NNfgiyp  365 (460)
T COG5170         319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY-SNNFGIYP  365 (460)
T ss_pred             chHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc-ccceeeec
Confidence            4431             12   35778888888998887 77666664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.67  E-value=6.9e-06  Score=71.39  Aligned_cols=176  Identities=17%  Similarity=0.146  Sum_probs=109.5

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEE-----EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC------
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQR-----VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK------  160 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~-----~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------  160 (297)
                      +..++.++. |..+|+.+-.+. .....+.     +...  .+..++.+..++.+..+|.++|+.+........      
T Consensus       151 ~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~  227 (377)
T TIGR03300       151 RTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL  227 (377)
T ss_pred             ECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch
Confidence            445677777 888888776654 2211110     1111  124677888899999999999987654431100      


Q ss_pred             -CeeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         161 -EIDDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       161 -~v~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                       .+..+.-+|  .+..++.++.++.++.||+.+|+.+.........            ..  ...+..++...       
T Consensus       228 ~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~------------~p--~~~~~~vyv~~-------  286 (377)
T TIGR03300       228 ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQ------------GP--AVDDNRLYVTD-------  286 (377)
T ss_pred             hhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCcc------------Cc--eEeCCEEEEEC-------
Confidence             000111111  3457778888999999999999876554321100            01  12345566643       


Q ss_pred             CCCCeEEEEeCCCCceEEEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         238 RGISYVQQWDVDSGRLRLAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       .++.|..+|..+|+.+-.... ... ..+..+  .+..|++++. +|.|+++|..+++.+
T Consensus       287 -~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~-~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       287 -ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF-EGYLHWLSREDGSFV  343 (377)
T ss_pred             -CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC-CCEEEEEECCCCCEE
Confidence             489999999999987765532 222 333333  4678888998 999999999998764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.66  E-value=7.7e-06  Score=70.01  Aligned_cols=179  Identities=11%  Similarity=0.027  Sum_probs=116.8

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc-----------CCCcEEEEeCCCCeeeEEeccccC
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG-----------TDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----------~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      ...+.++++ .+..+..+.+-. -....=..+.|.+.|++|+.--           ....++|++++...+ .....-.+
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~  275 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKD  275 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeee-eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccc
Confidence            444556666 555444333221 1111223788999998776321           234678888774332 22225578


Q ss_pred             CeeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         161 EIDDVDFSISGEQIVSIA--KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      +|...+|+|.++.|++.+  .+..+.++|++.. ....+ ...+.           +.+-|+|.+++++.++.     +.
T Consensus       276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~~r-----------NT~~fsp~~r~il~agF-----~n  337 (561)
T COG5354         276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQKR-----------NTIFFSPHERYILFAGF-----DN  337 (561)
T ss_pred             cceeeeecccCCceeEEecccccceeecccccc-eEEec-CCccc-----------ccccccCcccEEEEecC-----Cc
Confidence            999999999988877654  6888999998754 22222 11111           12558999999999888     77


Q ss_pred             CCCeEEEEeCCCCce-EEEeccCCCeEEEEEcCCCCEEEEEecC-----CCeEEEEEeCC
Q psy3337         239 GISYVQQWDVDSGRL-RLAREMKESLSALAVRDDGRFVAVGTMF-----TGSVFVYIAFS  292 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~~~-----dg~i~vwd~~~  292 (297)
                      ..|.+-+||...... +..+.+.. .+-+.|+|||.++.+....     |..+.|||+..
T Consensus       338 l~gni~i~~~~~rf~~~~~~~~~n-~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         338 LQGNIEIFDPAGRFKVAGAFNGLN-TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             cccceEEeccCCceEEEEEeecCC-ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            789999999987443 33565543 4556899999998776521     77899999864

>KOG1645|consensus

Probab=98.65  E-value=8.3e-07  Score=73.67  Aligned_cols=88  Identities=15%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC-CEEEEEeC
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG-EQIVSIAK  179 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~  179 (297)
                      +..+.+..+.+. +|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..+ ..+++.+|.-+. ++++.|..
T Consensus       179 ~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~  256 (463)
T KOG1645|consen  179 ESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ  256 (463)
T ss_pred             ccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc
Confidence            444444445444 7888999999999776 7889999999999999999888888877 689999998754 56777788


Q ss_pred             CCcEEEEEcCCC
Q psy3337         180 DGKAFVWNSKNG  191 (297)
Q Consensus       180 d~~v~lwd~~~~  191 (297)
                      .|.|.+||++..
T Consensus       257 nG~VlvyD~R~~  268 (463)
T KOG1645|consen  257 NGMVLVYDMRQP  268 (463)
T ss_pred             CceEEEEEccCC
Confidence            999999999853

>KOG4532|consensus

Probab=98.61  E-value=1.2e-05  Score=63.68  Aligned_cols=148  Identities=9%  Similarity=0.027  Sum_probs=97.6

Q ss_pred             EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeee-eeccCCCCceEE
Q psy3337         131 LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKE-LKWNTPDNIKYL  208 (297)
Q Consensus       131 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~-~~~~~~~~~~~~  208 (297)
                      .+..++.|.++++.++.-+.....+....-.+.++++++|++++++.+....|..|.+... +.+.. ......++ .+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~-gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH-GFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC-cee
Confidence            4566778888888887644322222111123889999999999999999999999988643 33322 22222222 122


Q ss_pred             EEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC-ceEEE----eccCCC-eEEEEEcCCCC--EEEEEec
Q psy3337         209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG-RLRLA----REMKES-LSALAVRDDGR--FVAVGTM  280 (297)
Q Consensus       209 ~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~----~~~~~~-v~~~~~s~dg~--~l~~~~~  280 (297)
                              ..|+.....++++..        ||++.|||++.. .+...    -..|.. ++.+.|++-|.  +|+..-.
T Consensus       209 --------~S~s~~~~~FAv~~Q--------dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh  272 (344)
T KOG4532|consen  209 --------NSFSENDLQFAVVFQ--------DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH  272 (344)
T ss_pred             --------eeeccCcceEEEEec--------CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence                    447878888888555        999999999973 33322    233444 99999998654  3444433


Q ss_pred             CCCeEEEEEeCCceec
Q psy3337         281 FTGSVFVYIAFSLQMC  296 (297)
Q Consensus       281 ~dg~i~vwd~~~~~~~  296 (297)
                       -+.+.+.|++++...
T Consensus       273 -fs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  273 -FSRVHVVDTRNYVNH  287 (344)
T ss_pred             -cceEEEEEcccCcee
Confidence             688999999987643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.61  E-value=2.1e-05  Score=63.55  Aligned_cols=179  Identities=16%  Similarity=0.155  Sum_probs=110.0

Q ss_pred             CceEEE-EeeCCCeEEEEecC--CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAG--SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      +++|.. |..+|+.+-....+  .... .+. ..+++..+++++.++.+..||..+|+.+..+.. ...+.... ...+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGP-VAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSE-EET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCc-cce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            567777 98899988777522  2222 111 333566777878999999999999998887765 22222222 22445


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeee-eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKEL-KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG  251 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~  251 (297)
                      .++.++.++.++.+|..+|+.+... ....+.. .....      ......+..++...        .++.|..+|+.+|
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~--------~~g~l~~~d~~tG  142 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA-GVRSS------SSPAVDGDRLYVGT--------SSGKLVALDPKTG  142 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC-STB--------SEEEEETTEEEEEE--------TCSEEEEEETTTT
T ss_pred             ccccccceeeeEecccCCcceeeeecccccccc-ccccc------cCceEecCEEEEEe--------ccCcEEEEecCCC
Confidence            6677778889999999999988774 3322111 00000      11111255555533        3899999999999


Q ss_pred             ceEEEeccCCC-----e------EEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         252 RLRLAREMKES-----L------SALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       252 ~~~~~~~~~~~-----v------~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +.+........     +      .+-.+..++ .++.++. ++.+..+|+.+++.
T Consensus       143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~tg~~  195 (238)
T PF13360_consen  143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAVDLATGEK  195 (238)
T ss_dssp             EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEEETTTTEE
T ss_pred             cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEEECCCCCE
Confidence            99877755331     1      122222345 6666666 77544449988874

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.61  E-value=2.5e-05  Score=76.02  Aligned_cols=166  Identities=12%  Similarity=0.118  Sum_probs=105.2

Q ss_pred             EEEEEEecCCCEEEEEc-CCCcEEEEeCCCCeeeEEeccc-----------------cCCeeEEEEcc-CCCEEEEEeCC
Q psy3337         120 QRVVRLSRNGDLMVTGG-TDGHLRLWSFPKMKPLLHIEAH-----------------SKEIDDVDFSI-SGEQIVSIAKD  180 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~sp-~~~~l~s~~~d  180 (297)
                      ...++++++++.|+.+. ..+.|+++|+.++. +.++.+-                 -.....++|+| ++.++++...+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            46889999887665554 45679999987654 3333210                 11245899999 56666777778


Q ss_pred             CcEEEEEcCCCceeeeeeccCC----CCc-eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEE
Q psy3337         181 GKAFVWNSKNGSLSKELKWNTP----DNI-KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRL  255 (297)
Q Consensus       181 ~~v~lwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~  255 (297)
                      +.|++||..++... .+.+...    .+. ........-..++++|++..|+.+..       .++.|++||+.++....
T Consensus       705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-------~n~~Irv~D~~tg~~~~  776 (1057)
T PLN02919        705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-------ESSSIRALDLKTGGSRL  776 (1057)
T ss_pred             CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-------CCCeEEEEECCCCcEEE
Confidence            99999998776432 2222110    000 00000112234889999987776543       47899999998765321


Q ss_pred             Eecc----------------------CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         256 AREM----------------------KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       256 ~~~~----------------------~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ...+                      .....+++++++|..+++-.. ++.|++||..++..
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v  837 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPATKRV  837 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCCCeE
Confidence            1100                      012468999999998888777 99999999987653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.57  E-value=4.3e-05  Score=66.45  Aligned_cols=186  Identities=15%  Similarity=0.067  Sum_probs=111.1

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCee-----EE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID-----DV  165 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-----~~  165 (297)
                      .++.++.+.. |..+|+.+-... . .+.+.+.... .+..++.+..++.++.||.++++.+..+......+.     +.
T Consensus       110 v~~~~g~l~ald~~tG~~~W~~~-~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp  186 (377)
T TIGR03300       110 VGTEKGEVIALDAEDGKELWRAK-L-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASP  186 (377)
T ss_pred             EEcCCCEEEEEECCCCcEeeeec-c-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence            4556777777 888998876654 1 1222211111 345677788899999999999998877654332211     11


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeee-eeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRY-GLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      ..  .+..++.+..++.+..+|+++|+.+.......+.+.........+ .....  .+..++...        .++.++
T Consensus       187 ~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~--------~~g~l~  254 (377)
T TIGR03300       187 VI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS--------YQGRVA  254 (377)
T ss_pred             EE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE--------cCCEEE
Confidence            11  124677788889999999999987655432221110000000000 00011  134555543        389999


Q ss_pred             EEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         245 QWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .||..+|+.+-...... ...+.  .++..|++++. +|.|..+|..+++.+
T Consensus       255 a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~-~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       255 ALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDA-DGVVVALDRRSGSEL  302 (377)
T ss_pred             EEECCCCcEEEeeccCC-ccCce--EeCCEEEEECC-CCeEEEEECCCCcEE
Confidence            99999998776554222 22222  24667777888 999999999888753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.53  E-value=0.0001  Score=60.08  Aligned_cols=159  Identities=14%  Similarity=0.110  Sum_probs=100.4

Q ss_pred             EEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         122 VVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS-ISGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       122 ~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      ++.|.+ ++.++++-...+.|..|+..+++... +....  ...+++. +++ .|+.+..++ +.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            678998 77777787789999999998776532 22222  7788888 565 455555544 55669888755433332


Q ss_pred             cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEe
Q psy3337         200 NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  279 (297)
                      .....     .....+.+++.|+|...++............+.|..++.. ++.......-...+.++|+||++.|++..
T Consensus        79 ~~~~~-----~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   79 PDGGV-----PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             ETTCS-----CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred             cCCCc-----ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecc
Confidence            11000     1123456889999997666543111111111678888888 66655555544489999999999887554


Q ss_pred             cCCCeEEEEEeC
Q psy3337         280 MFTGSVFVYIAF  291 (297)
Q Consensus       280 ~~dg~i~vwd~~  291 (297)
                      ...+.|..|++.
T Consensus       153 s~~~~i~~~~~~  164 (246)
T PF08450_consen  153 SFNGRIWRFDLD  164 (246)
T ss_dssp             TTTTEEEEEEEE
T ss_pred             cccceeEEEecc
Confidence            438889999985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.53  E-value=1.1e-05  Score=70.47  Aligned_cols=178  Identities=14%  Similarity=0.088  Sum_probs=110.5

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEE---cCC-CcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG---GTD-GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~---~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      ..+.+ |.. |...+.+. .-...+..-.|+|++..++..   ... ..+.++|+.+++....+. -.+.-...+|+|||
T Consensus       173 ~~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG  249 (425)
T COG0823         173 YELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG  249 (425)
T ss_pred             ceEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence            34555 544 55555554 445567788999999876644   223 469999998876544333 23334568999999


Q ss_pred             CEEEEE-eCCCc--EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         172 EQIVSI-AKDGK--AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       172 ~~l~s~-~~d~~--v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +.|+-+ ..|+.  |+++|+..+.... +......          ...-.|+|||+.++.++.     .+..-.|.+++.
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi----------~~~Ps~spdG~~ivf~Sd-----r~G~p~I~~~~~  313 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGI----------NTSPSWSPDGSKIVFTSD-----RGGRPQIYLYDL  313 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCccee-cccCCcc----------ccCccCCCCCCEEEEEeC-----CCCCcceEEECC
Confidence            987754 45655  6666777665322 3211100          012348999999999876     444457888888


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCe--EEEEEeCCc
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGS--VFVYIAFSL  293 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~--i~vwd~~~~  293 (297)
                      ..+...+.......-....|+|||++|+..+..+|.  |.+.|+.++
T Consensus       314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence            876553333222223378899999999887741344  666665544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.53  E-value=6.4e-06  Score=78.72  Aligned_cols=160  Identities=15%  Similarity=0.137  Sum_probs=105.5

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeee------------------------EEecc--------------
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL------------------------LHIEA--------------  157 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~------------------------~~~~~--------------  157 (297)
                      -+..|.+++||||+..|+....++++.+.+- +..++                        ..|+|              
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            4567999999999999999988888877651 11100                        11110              


Q ss_pred             ----------ccCCeeEEEEccCCCEEEEEeC---C---CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC
Q psy3337         158 ----------HSKEIDDVDFSISGEQIVSIAK---D---GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP  221 (297)
Q Consensus       158 ----------~~~~v~~~~~sp~~~~l~s~~~---d---~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  221 (297)
                                +.+.-..++|-.||.+||+.+-   .   ..+++|+- .|....+...-.          .--..++|-|
T Consensus       198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~----------gLe~~l~WrP  266 (928)
T PF04762_consen  198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVD----------GLEGALSWRP  266 (928)
T ss_pred             CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCC----------CccCCccCCC
Confidence                      2224457889999999998764   2   57899985 465443332110          0112488999


Q ss_pred             CCeEEEEeccCcccccCCCCeEEEEeCCC---CceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         222 KRSRLFTLANPLAQNKRGISYVQQWDVDS---GRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       222 ~~~~l~~~~~~~~~~g~~d~~i~~wd~~~---~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      .|..|+++..     -.....|.+|.-..   |+-.-.+..... |..+.|++|+..|+.... |. |.+|-..+.+
T Consensus       267 sG~lIA~~q~-----~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-~~-vqLWt~~NYH  336 (928)
T PF04762_consen  267 SGNLIASSQR-----LPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-DR-VQLWTRSNYH  336 (928)
T ss_pred             CCCEEEEEEE-----cCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec-CC-ceEEEeeCCE
Confidence            9999998765     44456778887654   221112212233 999999999999999885 55 9999876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.51  E-value=0.00012  Score=59.62  Aligned_cols=154  Identities=15%  Similarity=0.134  Sum_probs=96.0

Q ss_pred             EEEEEEe-cCCCEEEEEcCCCcEEEEeCCCCeeeEEecc-----ccCCeeEEEEccCCCEEEEEeCC--------CcEEE
Q psy3337         120 QRVVRLS-RNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA-----HSKEIDDVDFSISGEQIVSIAKD--------GKAFV  185 (297)
Q Consensus       120 v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~s~~~d--------~~v~l  185 (297)
                      ...+++. +++.++++ ... .+.++|+.+++....+..     .....+++++.|+|++.++....        +.|..
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5577777 66554444 444 456669888864433322     33568899999999987776543        45667


Q ss_pred             EEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-Cc------eEEEec
Q psy3337         186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GR------LRLARE  258 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~------~~~~~~  258 (297)
                      ++.. ++.......           ...-+.++|+|+++.|+.+.       +..+.|..+++.. +.      ....+.
T Consensus       120 ~~~~-~~~~~~~~~-----------~~~pNGi~~s~dg~~lyv~d-------s~~~~i~~~~~~~~~~~~~~~~~~~~~~  180 (246)
T PF08450_consen  120 IDPD-GKVTVVADG-----------LGFPNGIAFSPDGKTLYVAD-------SFNGRIWRFDLDADGGELSNRRVFIDFP  180 (246)
T ss_dssp             EETT-SEEEEEEEE-----------ESSEEEEEEETTSSEEEEEE-------TTTTEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred             ECCC-CeEEEEecC-----------cccccceEECCcchheeecc-------cccceeEEEeccccccceeeeeeEEEcC
Confidence            7765 433222211           11123588999999887643       3477899999864 22      122223


Q ss_pred             cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         259 MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       259 ~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .... .-.+++..+|++.++... .+.|.++|.. |+.+
T Consensus       181 ~~~g~pDG~~vD~~G~l~va~~~-~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  181 GGPGYPDGLAVDSDGNLWVADWG-GGRIVVFDPD-GKLL  217 (246)
T ss_dssp             SSSCEEEEEEEBTTS-EEEEEET-TTEEEEEETT-SCEE
T ss_pred             CCCcCCCcceEcCCCCEEEEEcC-CCEEEEECCC-ccEE
Confidence            3332 788999999998887777 8999999977 6643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912|consensus

Probab=98.50  E-value=4.9e-06  Score=74.66  Aligned_cols=153  Identities=18%  Similarity=0.220  Sum_probs=110.5

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC------------CEEEEEeCCCcEEEEE
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG------------EQIVSIAKDGKAFVWN  187 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~------------~~l~s~~~d~~v~lwd  187 (297)
                      -.++.|+|.| +||.|+.. .|.+-|..+.+.+..+.-|...|+.+.|.|..            -.||++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            4588999988 67777644 78899999999999999999999999998731            2466777789999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCC-eEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEE
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKR-SRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSA  265 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~  265 (297)
                      ...+..+..+..+........+       +.+-++. ..|+.+..        ..+|.+|+..+|+..-....... ..|
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W-------~~~rd~Srd~LlaIh~--------ss~lvLwntdtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCW-------VPARDDSRDVLLAIHG--------SSTLVLWNTDTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheee-------eeccCcchheeEEecC--------CcEEEEEEccCCceeeccccCCcceee
Confidence            9988777777654311101111       2223444 45666554        67999999999998887776555 677


Q ss_pred             EEEcC-CCCEEEEEecCCCeEEEEEe
Q psy3337         266 LAVRD-DGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       266 ~~~s~-dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +.+.| |.+.+..-+. .|.+.+-+.
T Consensus       161 f~~DPfd~rh~~~l~s-~g~vl~~~~  185 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGS-KGFVLSCKD  185 (1062)
T ss_pred             eeeCCCCcceEEEEcc-CceEEEEec
Confidence            99988 6666666665 777766653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.50  E-value=4.2e-05  Score=73.25  Aligned_cols=152  Identities=15%  Similarity=0.136  Sum_probs=97.8

Q ss_pred             EEEEEEecCCCEEEEEcC------CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC---CCcEEEEEcCC
Q psy3337         120 QRVVRLSRNGDLMVTGGT------DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK---DGKAFVWNSKN  190 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---d~~v~lwd~~~  190 (297)
                      -..++|-.||.++|+.+.      -..++||+- .|....+-..-.+--.+++|-|.|+++|+...   ...|.+|. ++
T Consensus       212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rN  289 (928)
T PF04762_consen  212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RN  289 (928)
T ss_pred             ceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cC
Confidence            347888889998887664      257899994 46544333333333457899999999998764   34455665 46


Q ss_pred             CceeeeeeccC-CCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc--eEEE--eccCCCeEE
Q psy3337         191 GSLSKELKWNT-PDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR--LRLA--REMKESLSA  265 (297)
Q Consensus       191 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~--~~~~--~~~~~~v~~  265 (297)
                      |..-..|.... +.       ...+..+.|++|+..|+....         ..|.+|-..+..  +...  +.....+..
T Consensus       290 GLrhgeF~l~~~~~-------~~~v~~l~Wn~ds~iLAv~~~---------~~vqLWt~~NYHWYLKqei~~~~~~~~~~  353 (928)
T PF04762_consen  290 GLRHGEFTLRFDPE-------EEKVIELAWNSDSEILAVWLE---------DRVQLWTRSNYHWYLKQEIRFSSSESVNF  353 (928)
T ss_pred             CcEeeeEecCCCCC-------CceeeEEEECCCCCEEEEEec---------CCceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence            65555554332 11       122356899999999988543         349999988732  2333  333344666


Q ss_pred             EEEcCC-CCEEEEEecCCCeEEEEEe
Q psy3337         266 LAVRDD-GRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       266 ~~~s~d-g~~l~~~~~~dg~i~vwd~  290 (297)
                      +.|+|. ...|...+. +|.+..++.
T Consensus       354 ~~Wdpe~p~~L~v~t~-~g~~~~~~~  378 (928)
T PF04762_consen  354 VKWDPEKPLRLHVLTS-NGQYEIYDF  378 (928)
T ss_pred             eEECCCCCCEEEEEec-CCcEEEEEE
Confidence            999994 455777776 677755543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.45  E-value=3.3e-06  Score=68.03  Aligned_cols=176  Identities=13%  Similarity=0.175  Sum_probs=107.9

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-----eeEEecccc------------CCeeEEEEccCC--CEEEE
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-----PLLHIEAHS------------KEIDDVDFSISG--EQIVS  176 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~sp~~--~~l~s  176 (297)
                      ....|+++.|...|.+|++|...|.|.+|.-+...     ....|++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34568899999999999999999999999754322     233466664            347788886543  45777


Q ss_pred             EeCCCcEEEEEcCCCce-------------------eee---eeccC--CCCceEE---------EEeeeeeeeeeCCCC
Q psy3337         177 IAKDGKAFVWNSKNGSL-------------------SKE---LKWNT--PDNIKYL---------FKRCRYGLVEDSPKR  223 (297)
Q Consensus       177 ~~~d~~v~lwd~~~~~~-------------------~~~---~~~~~--~~~~~~~---------~~~~~~~~~~~s~~~  223 (297)
                      .+.|.+|++|.+.....                   +.+   +..+.  ....-..         .+++.++++.++.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            78999999998864310                   000   00000  0000111         122334567777776


Q ss_pred             eEEEEeccC------------------------------------------cccccCCCCeEEEEeCCCCce------EE
Q psy3337         224 SRLFTLANP------------------------------------------LAQNKRGISYVQQWDVDSGRL------RL  255 (297)
Q Consensus       224 ~~l~~~~~~------------------------------------------~~~~g~~d~~i~~wd~~~~~~------~~  255 (297)
                      ..++++...                                          .+.-.+..|.|++-|++...+      +.
T Consensus       185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            666655321                                          223345567788888774211      10


Q ss_pred             E--e--------cc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         256 A--R--------EM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       256 ~--~--------~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      .  +        .. -..|..+.|+++|++|++-..  -+|++||+...
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~  311 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMA  311 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccc
Confidence            0  1        11 123788999999999998875  79999998653

>KOG4714|consensus

Probab=98.43  E-value=4.5e-07  Score=71.12  Aligned_cols=72  Identities=24%  Similarity=0.468  Sum_probs=61.9

Q ss_pred             cEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCe-eeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCC
Q psy3337         119 LQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMK-PLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       119 ~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      .|++++-+|. .+.+++|+.||.+-+||.+... ++..++.|+.+++.+-|+| ++..|++++.||.+-.||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4889999995 4677889999999999998764 4556789999999999999 678999999999999999753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.43  E-value=8.1e-06  Score=69.88  Aligned_cols=180  Identities=13%  Similarity=0.187  Sum_probs=119.1

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEE
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI  174 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  174 (297)
                      +..|.+ +...............-++..++|||.|.+|++.... .|.+|+-..+..+..+. |. .|..+.|+|.+++|
T Consensus        10 s~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL   86 (561)
T COG5354          10 SAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYL   86 (561)
T ss_pred             cceEEEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-cC-CceecccCccccee
Confidence            344555 4443333444441366778899999999999987655 48899988776666664 43 59999999999999


Q ss_pred             EEEeCC---------------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         175 VSIAKD---------------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       175 ~s~~~d---------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      .+=+..               ..+.+||+.+|..+..+......   +.    .+..+.|+-+..+++-+.         
T Consensus        87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---~~----~Wp~~k~s~~D~y~ARvv---------  150 (561)
T COG5354          87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---YL----GWPVLKFSIDDKYVARVV---------  150 (561)
T ss_pred             eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---cc----ccceeeeeecchhhhhhc---------
Confidence            875432               35999999999999888654311   00    111366788887776653         


Q ss_pred             CCeEEEEeCCCCceE-EEecc--CCCeEEEEEcCCC--CEEEEE-----ecCCCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRLR-LAREM--KESLSALAVRDDG--RFVAVG-----TMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~~-~~~~~--~~~v~~~~~s~dg--~~l~~~-----~~~dg~i~vwd~~~~~~~  296 (297)
                      ...++++++ ++... ..+..  ...|....|+|.|  ..|+.-     .. ++.+++|.+.....+
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k-pa~~~i~sIp~~s~l  215 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNK-PAMVRILSIPKNSVL  215 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCC-CcEEEEEEccCCCee
Confidence            467999997 32221 11111  2338889999953  345543     34 678999998766544

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.42  E-value=3.8e-05  Score=68.85  Aligned_cols=175  Identities=10%  Similarity=0.030  Sum_probs=106.6

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc----------------------------------
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG----------------------------------  136 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------------------------------  136 (297)
                      .....+.+.+ |..+.+...++..+-  ....+.++|+|+++++.+                                  
T Consensus       210 ~~ey~~~vSvID~etmeV~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkd  287 (635)
T PRK02888        210 PKKYRSLFTAVDAETMEVAWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKA  287 (635)
T ss_pred             ccceeEEEEEEECccceEEEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhC
Confidence            4444566666 777776666655222  234678888888887664                                  


Q ss_pred             ------CCCcEEEEeCCC-----CeeeEEeccccCCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeccCCCC
Q psy3337         137 ------TDGHLRLWSFPK-----MKPLLHIEAHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLSKELKWNTPDN  204 (297)
Q Consensus       137 ------~d~~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~  204 (297)
                            .++.|.+.|..+     .+.+..+. -......+.++|||+++++++ .+.+|.+.|+.+.+....-+. .|. 
T Consensus       288 GK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-~~~-  364 (635)
T PRK02888        288 GKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-KPR-  364 (635)
T ss_pred             CCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-Ccc-
Confidence                  124477777766     23333333 345678899999999988765 489999999986543110000 000 


Q ss_pred             ceEEEEeeee----eeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC----------CceEEEeccCCCeEEEEE--
Q psy3337         205 IKYLFKRCRY----GLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS----------GRLRLAREMKESLSALAV--  268 (297)
Q Consensus       205 ~~~~~~~~~~----~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~----------~~~~~~~~~~~~v~~~~~--  268 (297)
                       ..+.....+    -..+|.++|....++..        |..|..|++..          ...+..+..|-.+-.+.-  
T Consensus       365 -~~vvaevevGlGPLHTaFDg~G~aytslf~--------dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~  435 (635)
T PRK02888        365 -DAVVAEPELGLGPLHTAFDGRGNAYTTLFL--------DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASM  435 (635)
T ss_pred             -ceEEEeeccCCCcceEEECCCCCEEEeEee--------cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecC
Confidence             000000000    12568899887767666        89999999886          345555655544333333  


Q ss_pred             ----cCCCCEEEEEec
Q psy3337         269 ----RDDGRFVAVGTM  280 (297)
Q Consensus       269 ----s~dg~~l~~~~~  280 (297)
                          .|||+||++...
T Consensus       436 g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        436 GETKEADGKWLVSLNK  451 (635)
T ss_pred             CCcCCCCCCEEEEccc
Confidence                678999888753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.40  E-value=0.00012  Score=62.15  Aligned_cols=112  Identities=9%  Similarity=-0.001  Sum_probs=82.4

Q ss_pred             CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC----------CCcEEEEEcCCCceeeeeeccC-CCCceE
Q psy3337         139 GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK----------DGKAFVWNSKNGSLSKELKWNT-PDNIKY  207 (297)
Q Consensus       139 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~----------d~~v~lwd~~~~~~~~~~~~~~-~~~~~~  207 (297)
                      +.|.+.|..+++.+..+..-..+ ..+ ++||++.|+.+..          +..|.+||+.+.+.+..+.... |..   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~---  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF---  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh---
Confidence            88999999999988888643333 235 9999998887755          6889999999999998886532 110   


Q ss_pred             EEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC
Q psy3337         208 LFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES  262 (297)
Q Consensus       208 ~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~  262 (297)
                      . ....-..++++|||++++....      +-+..|.++|+.+++.+..+.....
T Consensus       102 ~-~~~~~~~~~ls~dgk~l~V~n~------~p~~~V~VvD~~~~kvv~ei~vp~~  149 (352)
T TIGR02658       102 L-VGTYPWMTSLTPDNKTLLFYQF------SPSPAVGVVDLEGKAFVRMMDVPDC  149 (352)
T ss_pred             h-ccCccceEEECCCCCEEEEecC------CCCCEEEEEECCCCcEEEEEeCCCC
Confidence            0 0011123678999999997653      2378999999999999988776543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.35  E-value=4e-06  Score=73.21  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~  191 (297)
                      .....|.|++++|+...|+.|..||.|.+||...+...  +....-..+.++|+|+|..|++|+.-|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            57788999999999999999999999999998765432  2234456789999999999999999999999998643

>KOG0309|consensus

Probab=98.34  E-value=1.8e-06  Score=77.01  Aligned_cols=94  Identities=15%  Similarity=0.355  Sum_probs=71.0

Q ss_pred             CeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCe-eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMK-PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF  184 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~  184 (297)
                      +.+.-+..||...|+.+-|+|.. ..+++++.|..+..||+++.. ++..+..-......++|+-....+++.+....|.
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence            33433334999999999999965 689999999999999998754 5666655555678899987555555567778899


Q ss_pred             EEEcCCC-ceeeeeecc
Q psy3337         185 VWNSKNG-SLSKELKWN  200 (297)
Q Consensus       185 lwd~~~~-~~~~~~~~~  200 (297)
                      +||++.| .++..++.|
T Consensus       184 vwd~r~gs~pl~s~K~~  200 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGH  200 (1081)
T ss_pred             EEeccCCCcceEEeccc
Confidence            9999865 456666654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=0.00041  Score=60.28  Aligned_cols=185  Identities=12%  Similarity=0.131  Sum_probs=128.4

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC---CCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT---DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      .++.+.+ +..+.........+.  .-..++++|+++.+..+..   ++++.+.|..+.+.+.....-..+ ..++++|+
T Consensus        94 ~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~  170 (381)
T COG3391          94 DSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPD  170 (381)
T ss_pred             CCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCC
Confidence            3567777 877777777766455  3458999999977765544   688999998888877765433334 89999999


Q ss_pred             CCEEEEEe-CCCcEEEEEcCCCceeeeeecc--CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         171 GEQIVSIA-KDGKAFVWNSKNGSLSKELKWN--TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       171 ~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      |..++... .++.|.+.|........ -...  .+.+       ..-..+.++|+|.+++....     ++.++.+...|
T Consensus       171 g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~-------~~P~~i~v~~~g~~~yV~~~-----~~~~~~v~~id  237 (381)
T COG3391         171 GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVG-------TGPAGIAVDPDGNRVYVAND-----GSGSNNVLKID  237 (381)
T ss_pred             CCeEEEEecCCCeEEEEeCCCcceec-cccccccccC-------CCCceEEECCCCCEEEEEec-----cCCCceEEEEe
Confidence            99766655 68899999976544432 1100  0000       00113678999998888766     55567999999


Q ss_pred             CCCCceEEE-eccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         248 VDSGRLRLA-REMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       248 ~~~~~~~~~-~~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ..++..... ..... ....+.++|+|.++.+.....+.+.+.|..+.+.
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            998877665 33323 4677899999999988865258888888776554

>KOG0882|consensus

Probab=98.32  E-value=2e-06  Score=72.43  Aligned_cols=185  Identities=13%  Similarity=0.106  Sum_probs=117.4

Q ss_pred             CCCCCceEEEEeeCC----CeEEEEecCCCCcEEEEEEecCCCEEEEEcC-CCcEEEEeCCCCeeeEEeccccCCeeEEE
Q psy3337          92 IDSKEKNLRFGFKTF----DSVQTVFAGSESLQRVVRLSRNGDLMVTGGT-DGHLRLWSFPKMKPLLHIEAHSKEIDDVD  166 (297)
Q Consensus        92 ~~~~d~~i~~~~~~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  166 (297)
                      +++.|+.++.|-.+.    +.+..+. .|...|.+++.+.++..++|.+. |..++++|+++-..+.-++-.. ..-.+.
T Consensus        25 qASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~  102 (558)
T KOG0882|consen   25 QASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAE  102 (558)
T ss_pred             eeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceE
Confidence            577788888854444    2233344 78899999999999999999777 9999999998655443222111 111122


Q ss_pred             E--ccC-C-CEEEEE-eCCCcEEEEEcCCCc-eeeee-eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         167 F--SIS-G-EQIVSI-AKDGKAFVWNSKNGS-LSKEL-KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       167 ~--sp~-~-~~l~s~-~~d~~v~lwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      |  +|. - ..++.+ -.++.+.++|-.... ...-+ ..|          ..++..+.+.+-+..+.+..        .
T Consensus       103 wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH----------~sPV~~i~y~qa~Ds~vSiD--------~  164 (558)
T KOG0882|consen  103 WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH----------FSPVKKIRYNQAGDSAVSID--------I  164 (558)
T ss_pred             EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc----------cCceEEEEeeccccceeecc--------c
Confidence            2  221 1 133333 356889999976432 22111 112          12233355666676666644        4


Q ss_pred             CCeEEEEeCCC------CceEEEe---------c-cCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         240 ISYVQQWDVDS------GRLRLAR---------E-MKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       240 d~~i~~wd~~~------~~~~~~~---------~-~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      .|.|.-|....      .++...+         . ......++.|+|+|..+.+-.. |..|+++++.+++.++
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-DRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc-ccEEEEEEeccchhhh
Confidence            78999998873      1111111         1 1223789999999999999999 9999999999998764

>KOG2314|consensus

Probab=98.31  E-value=0.00019  Score=62.47  Aligned_cols=174  Identities=14%  Similarity=0.131  Sum_probs=108.8

Q ss_pred             EEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEE----------cCCCcEEEEeCCCCee-eEEeccccCCeeEEE
Q psy3337          99 LRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG----------GTDGHLRLWSFPKMKP-LLHIEAHSKEIDDVD  166 (297)
Q Consensus        99 i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~----------~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~  166 (297)
                      +-| .+.+++.+++.. -|.-.=.-+-|-.+|.+|+.-          +.-..+.|+.++.... +..+ .-...|...+
T Consensus       375 vtL~evPs~~~iRt~n-lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~Fa  452 (698)
T KOG2314|consen  375 VTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFA  452 (698)
T ss_pred             EEEEecCccceeeecc-ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeee
Confidence            444 566666665544 232222355666778888742          1222355565554432 2222 3456799999


Q ss_pred             EccCCCEEEEEeC---CCcEEEEEcCC-C---ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         167 FSISGEQIVSIAK---DGKAFVWNSKN-G---SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       167 ~sp~~~~l~s~~~---d~~v~lwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      |-|.|+.+++-+.   ..++.+|-+.+ .   +.+..+.            ....+.+.|+|.|+.++.++.     ++.
T Consensus       453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d------------k~~~N~vfwsPkG~fvvva~l-----~s~  515 (698)
T KOG2314|consen  453 WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD------------KKFANTVFWSPKGRFVVVAAL-----VSR  515 (698)
T ss_pred             eccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc------------ccccceEEEcCCCcEEEEEEe-----ccc
Confidence            9999998876543   35688887763 1   1122221            122345889999999999887     778


Q ss_pred             CCeEEEEeCCCCceEE-EeccCCCeEEEEEcCCCCEEEEEecC-----CCeEEEEEeC
Q psy3337         240 ISYVQQWDVDSGRLRL-AREMKESLSALAVRDDGRFVAVGTMF-----TGSVFVYIAF  291 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~~-----dg~i~vwd~~  291 (297)
                      .+.+..+|+.-..+.. ....|...+.+-|.|.|+|+++++..     |.--++|+++
T Consensus       516 ~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  516 RGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             ccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            9999999998522222 22335557889999999999998751     3445677664

>KOG4714|consensus

Probab=98.25  E-value=3.9e-06  Score=65.96  Aligned_cols=153  Identities=14%  Similarity=0.084  Sum_probs=92.2

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeee-EEeccccCCeeEEEEccCCCEEEEEeC-----CCcEEEEEcCCCceee
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEIDDVDFSISGEQIVSIAK-----DGKAFVWNSKNGSLSK  195 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~~~-----d~~v~lwd~~~~~~~~  195 (297)
                      +-..+--++.++++..||.+.+++.+.-..+ ..+......-.+.+....++.+.++..     -+..+.|+++   ++.
T Consensus        94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~---p~~  170 (319)
T KOG4714|consen   94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD---PIK  170 (319)
T ss_pred             cccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccc---ccc
Confidence            3334445677999999999999997641111 111111111122333334455544321     1234555553   222


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc-eEEEeccCCC-eEEEEEcC-CC
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR-LRLAREMKES-LSALAVRD-DG  272 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~-v~~~~~s~-dg  272 (297)
                      ++.....       ....+..++-+|..+.++.+       |+.||.+-+||.+... +...+..|+. ++.+-|+| ++
T Consensus       171 t~~~~~~-------~~~~v~~l~~hp~qq~~v~c-------gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  171 TLIPSKK-------ALDAVTALCSHPAQQHLVCC-------GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             ccccccc-------ccccchhhhCCcccccEEEE-------ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence            2221110       00113446678877766665       6789999999999853 3445666776 99999999 78


Q ss_pred             CEEEEEecCCCeEEEEEeCC
Q psy3337         273 RFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..|+++++ ||.+..||..+
T Consensus       237 ~~Lft~se-dGslw~wdas~  255 (319)
T KOG4714|consen  237 EHLFTCSE-DGSLWHWDAST  255 (319)
T ss_pred             hheeEecC-CCcEEEEcCCC
Confidence            89999999 99999999863

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.25  E-value=0.00032  Score=57.74  Aligned_cols=149  Identities=16%  Similarity=0.084  Sum_probs=103.9

Q ss_pred             EEEEEEec-CCCEEEEEcCCCc-EEEEeCCCCeeeEEeccccCCee--EEEEccCCCEEEEEeCC-----CcEEEEEcC-
Q psy3337         120 QRVVRLSR-NGDLMVTGGTDGH-LRLWSFPKMKPLLHIEAHSKEID--DVDFSISGEQIVSIAKD-----GKAFVWNSK-  189 (297)
Q Consensus       120 v~~~~~s~-~g~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~--~~~~sp~~~~l~s~~~d-----~~v~lwd~~-  189 (297)
                      ...++.+| .+..++.+-.-|+ ..+||..+++....+....+.-.  .-.|||||++|++.-.|     |.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34678888 4566777777664 57899999988777765443322  46799999999987544     789999998 


Q ss_pred             CCceeeeeeccC--CCCceEEEEeeeeeeeeeCCCCeEEEEeccC----------cccccCCCCeEEEEeCCCCceEEEe
Q psy3337         190 NGSLSKELKWNT--PDNIKYLFKRCRYGLVEDSPKRSRLFTLANP----------LAQNKRGISYVQQWDVDSGRLRLAR  257 (297)
Q Consensus       190 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----------~~~~g~~d~~i~~wd~~~~~~~~~~  257 (297)
                      +.+.+.++..+.  |.            .+.+.|||+.|+.+...          .+--.+.+..|...|..+|+++...
T Consensus        87 ~~~ri~E~~s~GIGPH------------el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~  154 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPH------------ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV  154 (305)
T ss_pred             CcEEEeEecCCCcChh------------hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence            556666666543  22            15568888777666542          1222356677888899999988774


Q ss_pred             cc----CCC-eEEEEEcCCCCEEEEEec
Q psy3337         258 EM----KES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       258 ~~----~~~-v~~~~~s~dg~~l~~~~~  280 (297)
                      ..    |.- |+.+++.++|..++..-.
T Consensus       155 ~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~  182 (305)
T PF07433_consen  155 ELPPDLHQLSIRHLAVDGDGTVAFAMQY  182 (305)
T ss_pred             ecCccccccceeeEEecCCCcEEEEEec
Confidence            43    333 999999999887766544

>KOG2066|consensus

Probab=98.23  E-value=3e-05  Score=69.99  Aligned_cols=146  Identities=15%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE  196 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~  196 (297)
                      .+.+.|++++  +++|+-|..+|.|++++.. +.+ .+...|...      ..+|.++++++.||+|.|-.+-+.+...+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3456677775  5689999999999999965 333 334445543      56899999999999999999988888887


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCC-----CeEEEEeccCcccccCCCCeEEEEeCCC-C--ceEEEeccCCCeEEEEE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPK-----RSRLFTLANPLAQNKRGISYVQQWDVDS-G--RLRLAREMKESLSALAV  268 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~--~~~~~~~~~~~v~~~~~  268 (297)
                      +..+.|.           ..++++|+     .+.+++        |+..| +.++.-.- |  ..+..-.+.+.|.++.|
T Consensus       109 ~df~rpi-----------ksial~Pd~~~~~sk~fv~--------GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen  109 YDFKRPI-----------KSIALHPDFSRQQSKQFVS--------GGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW  168 (846)
T ss_pred             EecCCcc-----------eeEEeccchhhhhhhheee--------cCcce-EEEehhhhhcCccceeeecCccceEEEEe
Confidence            7776543           23677887     344555        55566 77766443 1  22211223344999999


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                        .|.+||.++  |--|+|||+.+.+.+
T Consensus       169 --~g~lIAWan--d~Gv~vyd~~~~~~l  192 (846)
T KOG2066|consen  169 --RGNLIAWAN--DDGVKVYDTPTRQRL  192 (846)
T ss_pred             --cCcEEEEec--CCCcEEEecccccee
Confidence              578888888  555999999887754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.20  E-value=0.0003  Score=58.58  Aligned_cols=194  Identities=13%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCC-CCeeeEE----eccccCC-eeEEEEcc
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFP-KMKPLLH----IEAHSKE-IDDVDFSI  169 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~-~~~~~~~----~~~~~~~-v~~~~~sp  169 (297)
                      +|-| |+...+.+..+.  -.+   |...-|.+ +.|.+-+.||.+.-..+. .|+....    |....++ +..-++..
T Consensus       119 SVtVVDl~~~kvv~ei~--~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~  193 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEID--TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR  193 (342)
T ss_dssp             EEEEEETTTTEEEEEEE--GTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred             eEEEEECCCCceeeeec--CCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence            3455 566666665554  111   23333432 457788889999888876 5554322    1111222 22334444


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceee--eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC-CC--CeEE
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSK--ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR-GI--SYVQ  244 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~-~d--~~i~  244 (297)
                      .+..++-.+..|.|+--|+.......  .+..-......--+..+.+..+++++....|+.....- .-|+ .+  ..|.
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g-~~gsHKdpgteVW  272 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG-GEGSHKDPGTEVW  272 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE---TT-TTS-EEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC-CCCCccCCceEEE
Confidence            55556667889999998886543221  11111100001123445566688888777777664310 1111 12  2688


Q ss_pred             EEeCCCCceEEEeccCCCeEEEEEcCCCC-EEEEEecCCCeEEEEEeCCceecC
Q psy3337         245 QWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      ++|+.+++.+..+.....+.++.++.|.+ +|++.+..++.|.+||..+|+.++
T Consensus       273 v~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  273 VYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             EEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            89999999999998766688999999876 444433327899999999998763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2066|consensus

Probab=98.19  E-value=0.00011  Score=66.62  Aligned_cols=142  Identities=12%  Similarity=0.059  Sum_probs=94.3

Q ss_pred             ecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC-----CCEEEEEeCCCcEEEEEcCCCceeeeeecc
Q psy3337         126 SRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS-----GEQIVSIAKDGKAFVWNSKNGSLSKELKWN  200 (297)
Q Consensus       126 s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~  200 (297)
                      ..+|.++++|+.||+|.|..+-+.+...++. ...++.+++++|+     .+.+++|+.-| +.++.-+--........+
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            4469999999999999999888777665554 3457999999997     56899999888 777753211111111122


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-------eEEEEEcCCCC
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-------LSALAVRDDGR  273 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-------v~~~~~s~dg~  273 (297)
                      ...+        .+..+.|  .|.+++.+.         |-.|++||+.+++.+..++....       ...+.|.++.+
T Consensus       158 ~~eG--------~I~~i~W--~g~lIAWan---------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~  218 (846)
T KOG2066|consen  158 EGEG--------PIHSIKW--RGNLIAWAN---------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR  218 (846)
T ss_pred             cCcc--------ceEEEEe--cCcEEEEec---------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe
Confidence            2111        1222444  366777754         56799999999888877654321       46788887665


Q ss_pred             EEEEEecCCCeEEEEEeC
Q psy3337         274 FVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       274 ~l~~~~~~dg~i~vwd~~  291 (297)
                      .++-.   ..+|+|..++
T Consensus       219 LVIGW---~d~v~i~~I~  233 (846)
T KOG2066|consen  219 LVIGW---GDSVKICSIK  233 (846)
T ss_pred             EEEec---CCeEEEEEEe
Confidence            55533   3478888876

>KOG1920|consensus

Probab=98.18  E-value=0.00013  Score=68.96  Aligned_cols=182  Identities=12%  Similarity=0.071  Sum_probs=114.1

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC----CC-------------------
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF----PK-------------------  148 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~----~~-------------------  148 (297)
                      ...+|.|.+ ++.+...... - .-...|.+++||||.+.++....+.++.+-+-    -.                   
T Consensus        86 ~~~~G~iilvd~et~~~eiv-g-~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGw  163 (1265)
T KOG1920|consen   86 ITALGDIILVDPETLELEIV-G-NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGW  163 (1265)
T ss_pred             EecCCcEEEEcccccceeee-e-eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecc
Confidence            334555666 6665543221 1 34567999999999999998888877766542    00                   


Q ss_pred             CeeeEEecccc---------------------CCeeEEEEccCCCEEEEEe----CC-CcEEEEEcCCCceeeeeeccCC
Q psy3337         149 MKPLLHIEAHS---------------------KEIDDVDFSISGEQIVSIA----KD-GKAFVWNSKNGSLSKELKWNTP  202 (297)
Q Consensus       149 ~~~~~~~~~~~---------------------~~v~~~~~sp~~~~l~s~~----~d-~~v~lwd~~~~~~~~~~~~~~~  202 (297)
                      |+....|.+..                     +.=+++.|-.||.++++..    .+ ..|++||.. |..-..-.... 
T Consensus       164 GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~-  241 (1265)
T KOG1920|consen  164 GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE-  241 (1265)
T ss_pred             cccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc-
Confidence            01011222111                     1123589999999999742    34 789999965 43321111000 


Q ss_pred             CCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC---CceEEEeccCCC-eEEEEEcCCCCEEEE-
Q psy3337         203 DNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS---GRLRLAREMKES-LSALAVRDDGRFVAV-  277 (297)
Q Consensus       203 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~---~~~~~~~~~~~~-v~~~~~s~dg~~l~~-  277 (297)
                               ..-..++|-|.|..++++..     -..+..|.+|.-..   |.-...+..... +..++|+.++..|++ 
T Consensus       242 ---------~l~~~LsWkPsgs~iA~iq~-----~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~  307 (1265)
T KOG1920|consen  242 ---------GLQHSLSWKPSGSLIAAIQC-----KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV  307 (1265)
T ss_pred             ---------ccccceeecCCCCeEeeeee-----cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeee
Confidence                     01123789999999999876     55677899998664   333333444444 899999999999987 


Q ss_pred             --EecCCCeEEEEEeCCc
Q psy3337         278 --GTMFTGSVFVYIAFSL  293 (297)
Q Consensus       278 --~~~~dg~i~vwd~~~~  293 (297)
                        ... ...|.+|-+.+.
T Consensus       308 ~~~~e-~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  308 TSNLE-NSLVQLWTTGNY  324 (1265)
T ss_pred             ecccc-cceEEEEEecCe
Confidence              444 555999987654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.16  E-value=7.8e-05  Score=69.19  Aligned_cols=138  Identities=11%  Similarity=0.119  Sum_probs=90.6

Q ss_pred             cCCCcEEEEeCCCCeeeEEeccccCC-eeEEEEcc-----CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEE
Q psy3337         136 GTDGHLRLWSFPKMKPLLHIEAHSKE-IDDVDFSI-----SGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYL  208 (297)
Q Consensus       136 ~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp-----~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~  208 (297)
                      .....|+-.|++.|+.+..+..|... |..++=..     ....-+.|-.+..+..||+|-. ..+..-..+     .+ 
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k-----~Y-  574 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK-----QY-  574 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-----cc-
Confidence            45678999999999999999887754 54443211     1234556777888999999843 222111111     11 


Q ss_pred             EEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-CCCeEEEEEcCCCCEEEEEecCCCeEEE
Q psy3337         209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-KESLSALAVRDDGRFVAVGTMFTGSVFV  287 (297)
Q Consensus       209 ~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~v  287 (297)
                      .+...|.+++-+.+|. |+        .|+.+|.||+||-...+....+++ ..+|..|+.+.||+||++.+  +..|.+
T Consensus       575 ~~~~~Fs~~aTt~~G~-ia--------vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlL  643 (794)
T PF08553_consen  575 SSKNNFSCFATTEDGY-IA--------VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLL  643 (794)
T ss_pred             ccCCCceEEEecCCce-EE--------EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEE
Confidence            1222344455555553 33        377799999999654444455655 44599999999999999888  678888


Q ss_pred             EEe
Q psy3337         288 YIA  290 (297)
Q Consensus       288 wd~  290 (297)
                      +++
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.15  E-value=0.00022  Score=62.43  Aligned_cols=179  Identities=13%  Similarity=0.120  Sum_probs=105.8

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC-------Ce
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK-------EI  162 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v  162 (297)
                      +..++.+.- |..+|+.+-.+............-+|  .+..++.+..++.+..+|..+++.+........       ..
T Consensus       166 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        166 HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence            445666666 88999887666411110000000112  233567778899999999999887665431110       01


Q ss_pred             eEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         163 DDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       163 ~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      ..+.-+|  .+..++.++.++.+..+|+.+|+.+-......+.  .          +  ...+..++...        .+
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--~----------~--~~~~~~vy~~~--------~~  303 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN--D----------F--AVDGGRIYLVD--------QN  303 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc--C----------c--EEECCEEEEEc--------CC
Confidence            1111223  3456777778999999999999876554321100  0          1  11244455543        48


Q ss_pred             CeEEEEeCCCCceEEEecc--CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         241 SYVQQWDVDSGRLRLAREM--KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +.+..+|..+|+.+-....  .....+..+  .+..|+.++. +|.|.++|..+|+.+
T Consensus       304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG~~~  358 (394)
T PRK11138        304 DRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDS-EGYLHWINREDGRFV  358 (394)
T ss_pred             CeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeC-CCEEEEEECCCCCEE
Confidence            9999999999877644332  111333333  2567778888 999999999998764

>KOG0309|consensus

Probab=98.14  E-value=1.8e-05  Score=70.81  Aligned_cols=155  Identities=13%  Similarity=0.131  Sum_probs=104.7

Q ss_pred             CcEEEEEEecCC---CEEEEEcCCCcEEEEeCCC---CeeeEEeccccCCeeEEEEccCC-CEEEEEeCCCcEEEEEcCC
Q psy3337         118 SLQRVVRLSRNG---DLMVTGGTDGHLRLWSFPK---MKPLLHIEAHSKEIDDVDFSISG-EQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       118 ~~v~~~~~s~~g---~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~d~~v~lwd~~~  190 (297)
                      ..|-.+.|+|..   .++++-+ ...-.+|++..   ...-..+.+|...|+++-|+|+. ..+++++-|-.+..||+++
T Consensus        68 w~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             chhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            346678898854   3444444 44556798853   23445677899999999999954 4788999999999999986


Q ss_pred             Cc-eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC-eEEEE
Q psy3337         191 GS-LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES-LSALA  267 (297)
Q Consensus       191 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~~  267 (297)
                      .. ++..+..          ...+-..|.|+-....+++        .+....|++||++. +.++..+++|-. |..+.
T Consensus       147 p~~p~ys~~~----------w~s~asqVkwnyk~p~vla--------sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~  208 (1081)
T KOG0309|consen  147 PHRPFYSTSS----------WRSAASQVKWNYKDPNVLA--------SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID  208 (1081)
T ss_pred             CCcceeeeec----------ccccCceeeecccCcchhh--------hccCCceEEEeccCCCcceEEecccceeeehHH
Confidence            53 2222211          1112223556654444444        33478899999998 567788888766 88888


Q ss_pred             EcCC-CCEEEEEecCCCeEEEEEeCC
Q psy3337         268 VRDD-GRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       268 ~s~d-g~~l~~~~~~dg~i~vwd~~~  292 (297)
                      |..- -..+.+.+. |++|++||...
T Consensus       209 fnr~~~s~~~s~~~-d~tvkfw~y~k  233 (1081)
T KOG0309|consen  209 FNRFKYSEIMSSSN-DGTVKFWDYSK  233 (1081)
T ss_pred             HhhhhhhhhcccCC-CCceeeecccc
Confidence            8652 345677777 99999999754

>KOG1008|consensus

Probab=98.14  E-value=7.7e-07  Score=78.08  Aligned_cols=180  Identities=12%  Similarity=0.154  Sum_probs=110.8

Q ss_pred             CCCCCCceEEE-Eee-CCCeEEEEecCCCCcEEEEEEec-CCCEEEEEc----CCCcEEEEeCCCC--eee--EEecc-c
Q psy3337          91 SIDSKEKNLRF-GFK-TFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGG----TDGHLRLWSFPKM--KPL--LHIEA-H  158 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~----~d~~i~iwd~~~~--~~~--~~~~~-~  158 (297)
                      ..|..+|.|-+ ... +...-..+.++|..+.++++|++ |.+.||.|-    .|..+.|||+.++  .+.  ..|.+ .
T Consensus        74 avG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~  153 (783)
T KOG1008|consen   74 AVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSST  153 (783)
T ss_pred             hhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccccc
Confidence            35666788888 433 33332444458888999999998 567787773    3567999999876  222  22332 3


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCC-CCeEEEEeccCcccc
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSP-KRSRLFTLANPLAQN  236 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~~~  236 (297)
                      .....+++|-.+.+++++|.....++++|++.. .....+....            +..+...| .+.+++.        
T Consensus       154 l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~------------vqG~tVdp~~~nY~cs--------  213 (783)
T KOG1008|consen  154 LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKY------------VQGITVDPFSPNYFCS--------  213 (783)
T ss_pred             ccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhh------------cccceecCCCCCceec--------
Confidence            445668889888888999988889999999722 1111111100            01133455 4555544        


Q ss_pred             cCCCCeEEEEeC-CC-CceEEEeccC-----CCeEEEEEcCCCC-EEEEEecCCCeEEEEEeC
Q psy3337         237 KRGISYVQQWDV-DS-GRLRLAREMK-----ESLSALAVRDDGR-FVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       237 g~~d~~i~~wd~-~~-~~~~~~~~~~-----~~v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~  291 (297)
                       ..|+.|.+||. +. ..++..+...     ..+..++|+|... .+++.....++|+++|+.
T Consensus       214 -~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  214 -NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             -cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence             23899999994 33 2223222221     2389999999432 334444326889999875

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.13  E-value=0.00053  Score=61.71  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=93.8

Q ss_pred             EecCCCEEE-EEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC-----------------------
Q psy3337         125 LSRNGDLMV-TGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD-----------------------  180 (297)
Q Consensus       125 ~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----------------------  180 (297)
                      ++|||+.+. +.-..+.+.+.|..+.+...++.-. .....++++|+|.++++.+.+                       
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            455665443 2334566777788877766665432 245677888998888777521                       


Q ss_pred             -----------------CcEEEEEcCC----C-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         181 -----------------GKAFVWNSKN----G-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       181 -----------------~~v~lwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                                       +.|.+.|.++    + ..+..+           .....-..+.++|||+++++.       +.
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yI-----------PVGKsPHGV~vSPDGkylyVa-------nk  340 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYV-----------PVPKNPHGVNTSPDGKYFIAN-------GK  340 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEE-----------ECCCCccceEECCCCCEEEEe-------CC
Confidence                             2233333332    1 111111           111112347889999999986       44


Q ss_pred             CCCeEEEEeCCCCc------------eEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         239 GISYVQQWDVDSGR------------LRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       239 ~d~~i~~wd~~~~~------------~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .+.++.+.|+.+.+            .+............+|.++|....+-.. |..|..|++.+
T Consensus       341 lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~-dsqv~kwn~~~  405 (635)
T PRK02888        341 LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL-DSQIVKWNIEA  405 (635)
T ss_pred             CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee-cceeEEEehHH
Confidence            68899999998854            2444444444678899999987777777 99999999875

>KOG2395|consensus

Probab=98.08  E-value=8.9e-05  Score=64.23  Aligned_cols=141  Identities=14%  Similarity=0.125  Sum_probs=95.1

Q ss_pred             EEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC--E-----EEEEeCCCcEEEEEcCC-Cc-eeeeeeccCC
Q psy3337         132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE--Q-----IVSIAKDGKAFVWNSKN-GS-LSKELKWNTP  202 (297)
Q Consensus       132 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~-----l~s~~~d~~v~lwd~~~-~~-~~~~~~~~~~  202 (297)
                      |.++.....++-.|++.|+.+..+.-+.. |.-+.+.|+..  .     =+.|-.|..|.-||++- +. .+.....|. 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq-  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ-  426 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc-
Confidence            44666677888999999999999987776 77788887643  2     23456678899999872 22 222223332 


Q ss_pred             CCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecC
Q psy3337         203 DNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMF  281 (297)
Q Consensus       203 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~  281 (297)
                          +. ...         +-+.+++.....++.|+.+|.|++||--..+....+++-+. |..+..+.||++|+..+  
T Consensus       427 ----y~-~k~---------nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--  490 (644)
T KOG2395|consen  427 ----YS-TKN---------NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--  490 (644)
T ss_pred             ----cc-ccc---------ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--
Confidence                10 111         12233444444445578899999999854455566777555 99999999999999888  


Q ss_pred             CCeEEEEEe
Q psy3337         282 TGSVFVYIA  290 (297)
Q Consensus       282 dg~i~vwd~  290 (297)
                      +..+.+.++
T Consensus       491 ~tyLlLi~t  499 (644)
T KOG2395|consen  491 KTYLLLIDT  499 (644)
T ss_pred             ccEEEEEEE
Confidence            677777775

>KOG3617|consensus

Probab=98.07  E-value=1.9e-05  Score=71.73  Aligned_cols=96  Identities=13%  Similarity=0.158  Sum_probs=77.3

Q ss_pred             CCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          92 IDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        92 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      +....|++.|-..+|++-..+.  ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..++..+.|||+|
T Consensus        36 S~er~GSVtIfadtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G  113 (1416)
T KOG3617|consen   36 SPERGGSVTIFADTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG  113 (1416)
T ss_pred             cCCCCceEEEEecCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC
Confidence            4555677777677777554442  22335689999998889999999999999987766655566799999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q psy3337         172 EQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~  189 (297)
                      ..++++..-|.|.+|...
T Consensus       114 ~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  114 TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CeEEEcCCCceeEEEEee
Confidence            999999999999999765

>KOG4649|consensus

Probab=98.04  E-value=0.0018  Score=51.48  Aligned_cols=107  Identities=13%  Similarity=0.068  Sum_probs=75.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ...++..+.+.- |..+|..+-...  -..+|.+-+.- -|++++.|...|.+++.+..+|+....+..-..-=......
T Consensus        26 v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   26 VVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             EEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            345666666655 888887654432  22233332222 46789999999999999999998887776433322334457


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      +++..+..++.|++.+..|.++..++.+.+.
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEeccc
Confidence            7899999999999999999998877766553

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.0012  Score=58.29  Aligned_cols=109  Identities=16%  Similarity=0.118  Sum_probs=73.6

Q ss_pred             EEEEEec-CCCEEEEE----cCCCc----EEEEeCCCCee--e--EEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         121 RVVRLSR-NGDLMVTG----GTDGH----LRLWSFPKMKP--L--LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       121 ~~~~~s~-~g~~l~s~----~~d~~----i~iwd~~~~~~--~--~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      .++.||. +.+.+.+.    +.+|.    -.+|+....+.  +  ..+ .....|.+.+++|+...|+.|+.||.|.+||
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            5778876 44555543    33443    24555544332  1  222 3667899999999999999999999999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      ...+..... +.           ......++|+|+|..+++        |+..|.|.+||+.-
T Consensus       288 ~~~~~t~~~-ka-----------~~~P~~iaWHp~gai~~V--------~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  288 TTRGVTLLA-KA-----------EFIPTLIAWHPDGAIFVV--------GSEQGELQCFDMAL  330 (545)
T ss_pred             cCCCeeeee-ee-----------cccceEEEEcCCCcEEEE--------EcCCceEEEEEeec
Confidence            876532211 11           111234889999999998        44589999999864

>KOG0882|consensus

Probab=97.96  E-value=0.0004  Score=59.03  Aligned_cols=195  Identities=18%  Similarity=0.167  Sum_probs=122.6

Q ss_pred             CCCCCC-CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC--CEEE-EEcCCCcEEEEeCCCCe--eeEEeccccCCe
Q psy3337          90 NSIDSK-EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG--DLMV-TGGTDGHLRLWSFPKMK--PLLHIEAHSKEI  162 (297)
Q Consensus        90 ~~~~~~-d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~-s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v  162 (297)
                      ..+... |..+++ ++++-..+.-+....-....++..+|..  ..++ +.-.++.+.++|-....  ....-.-|..+|
T Consensus        68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV  147 (558)
T KOG0882|consen   68 FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV  147 (558)
T ss_pred             EeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence            345444 778888 7776655433321111121122222221  1333 34467899999975432  233445689999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCC-Cc-----eeeeeeccCCCCceEEEEe--eeeeeeeeCCCCeEEEEeccCcc
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKN-GS-----LSKELKWNTPDNIKYLFKR--CRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~-~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      ..+.++|-+..+++....|.|.-|.... .+     ....++... +  .+.+..  ....+++|+|++..+.+.+.   
T Consensus       148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-d--Ly~f~K~Kt~pts~Efsp~g~qistl~~---  221 (558)
T KOG0882|consen  148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-D--LYGFPKAKTEPTSFEFSPDGAQISTLNP---  221 (558)
T ss_pred             EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc-h--hhcccccccCccceEEccccCcccccCc---
Confidence            9999999999999999999999998752 11     111111111 0  111111  11245889999999999776   


Q ss_pred             cccCCCCeEEEEeCCCCceEEEecc--------------------------------CCC--eEEEEEcCCCCEEEEEec
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAREM--------------------------------KES--LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~~--------------------------------~~~--v~~~~~s~dg~~l~~~~~  280 (297)
                           |..|+++++.+|+.++.+..                                ++.  -..+.|...|++|+-|+.
T Consensus       222 -----DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~  296 (558)
T KOG0882|consen  222 -----DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI  296 (558)
T ss_pred             -----ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence                 99999999998876543321                                111  356788889999999986


Q ss_pred             CCCeEEEEEeCCceecC
Q psy3337         281 FTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       281 ~dg~i~vwd~~~~~~~~  297 (297)
                        =-|+|.++.+++.+|
T Consensus       297 --~gikvin~~tn~v~r  311 (558)
T KOG0882|consen  297 --LGIKVINLDTNTVVR  311 (558)
T ss_pred             --eeEEEEEeecCeEEE
Confidence              458999998887653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.96  E-value=0.00036  Score=60.07  Aligned_cols=164  Identities=14%  Similarity=0.095  Sum_probs=94.1

Q ss_pred             ecCCCEEEEE---------cCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q psy3337         126 SRNGDLMVTG---------GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE  196 (297)
Q Consensus       126 s~~g~~l~s~---------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~  196 (297)
                      |||+++++..         +..+.+.|||+.+++...... ....+....|||+|+.++... ++.|+++++.++...+ 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-
Confidence            5777766653         234679999999876543333 366789999999999998874 5789999987774433 


Q ss_pred             eeccCCCCceEEEE----------eeeeeeeeeCCCCeEEEEeccC--------------------------cccccCCC
Q psy3337         197 LKWNTPDNIKYLFK----------RCRYGLVEDSPKRSRLFTLANP--------------------------LAQNKRGI  240 (297)
Q Consensus       197 ~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~l~~~~~~--------------------------~~~~g~~d  240 (297)
                      +......  .+...          ......+.||||+++|+.....                          .-..|...
T Consensus        78 lT~dg~~--~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n  155 (353)
T PF00930_consen   78 LTTDGEP--GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN  155 (353)
T ss_dssp             SES--TT--TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred             eccccce--eEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence            2211111  00000          0122458899999999888542                          12233333


Q ss_pred             C--eEEEEeCCCCceEE-Eec----cCCC-eEEEEEcCCCC-EEEEEecCC---CeEEEEEeCCce
Q psy3337         241 S--YVQQWDVDSGRLRL-ARE----MKES-LSALAVRDDGR-FVAVGTMFT---GSVFVYIAFSLQ  294 (297)
Q Consensus       241 ~--~i~~wd~~~~~~~~-~~~----~~~~-v~~~~~s~dg~-~l~~~~~~d---g~i~vwd~~~~~  294 (297)
                      .  .+.++|+.+++... ...    .... +..+.|++++. +++.-..++   ..+.++|+.+++
T Consensus       156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~  221 (353)
T PF00930_consen  156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE  221 (353)
T ss_dssp             -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred             CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc
Confidence            3  45567888776532 111    2233 89999999998 433333212   246666776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.92  E-value=0.0017  Score=56.80  Aligned_cols=184  Identities=12%  Similarity=0.065  Sum_probs=107.3

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEE-EEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE-EEEcc
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRV-VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD-VDFSI  169 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp  169 (297)
                      +..++.+.- |..+|+.+-... .. +.+.+ ..+  .+..++.+..++.+..+|..+|+.+..+......+.. ..-+|
T Consensus       126 ~~~~g~l~ald~~tG~~~W~~~-~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP  201 (394)
T PRK11138        126 GSEKGQVYALNAEDGEVAWQTK-VA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP  201 (394)
T ss_pred             EcCCCEEEEEECCCCCCccccc-CC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence            446677776 888998776664 21 12211 111  2346777888999999999999988777533111100 00122


Q ss_pred             --CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC--CCeEEEEeccCcccccCCCCeEEE
Q psy3337         170 --SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP--KRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       170 --~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                        .+..++.++.++.+..+|..+|+.+.......+.+....   .++..+..+|  .+..++..+        .++.+..
T Consensus       202 ~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~---~~~~~~~~sP~v~~~~vy~~~--------~~g~l~a  270 (394)
T PRK11138        202 ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEI---DRLVDVDTTPVVVGGVVYALA--------YNGNLVA  270 (394)
T ss_pred             EEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccch---hcccccCCCcEEECCEEEEEE--------cCCeEEE
Confidence              223566677889999999999987665543222110000   0000011122  133455533        3789999


Q ss_pred             EeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         246 WDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +|..+|+.+-...... ...+.  .++..|+.++. +|.+..+|..+++.
T Consensus       271 ld~~tG~~~W~~~~~~-~~~~~--~~~~~vy~~~~-~g~l~ald~~tG~~  316 (394)
T PRK11138        271 LDLRSGQIVWKREYGS-VNDFA--VDGGRIYLVDQ-NDRVYALDTRGGVE  316 (394)
T ss_pred             EECCCCCEEEeecCCC-ccCcE--EECCEEEEEcC-CCeEEEEECCCCcE
Confidence            9999998765543221 12222  24567777778 99999999988764

>smart00320 WD40 WD40 repeats

Probab=97.91  E-value=4.1e-05  Score=41.67  Aligned_cols=39  Identities=26%  Similarity=0.503  Sum_probs=34.3

Q ss_pred             CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       149 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      ++++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.89  E-value=4.9e-05  Score=41.36  Aligned_cols=38  Identities=24%  Similarity=0.549  Sum_probs=33.2

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEe
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWS  145 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  145 (297)
                      +....+. .|...|.++.|+++++++++++.|+.+++|+
T Consensus         3 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4455666 8889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.88  E-value=0.0014  Score=52.66  Aligned_cols=148  Identities=11%  Similarity=0.093  Sum_probs=83.7

Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCC--eeeEEec---cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy3337         123 VRLSRNGDLMVTGGTDGHLRLWSFPKM--KPLLHIE---AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL  197 (297)
Q Consensus       123 ~~~s~~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~  197 (297)
                      ++.+.+|+.||.- .|..|.|-..++.  ..+...+   .....-.-++||||+.+||.+...|+|++||+.. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            5667888877765 6777777655432  1222222   2223457899999999999999999999999854 444444


Q ss_pred             eccC--CCCceEEEEeeeeeeeeeCCC-CeEEEEeccCcccccCCCCeEEEEeCCC-----CceEEEe--ccC--CCeEE
Q psy3337         198 KWNT--PDNIKYLFKRCRYGLVEDSPK-RSRLFTLANPLAQNKRGISYVQQWDVDS-----GRLRLAR--EMK--ESLSA  265 (297)
Q Consensus       198 ~~~~--~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~~~g~~d~~i~~wd~~~-----~~~~~~~--~~~--~~v~~  265 (297)
                      ....  +......+....|-...-+++ ...|+.+..        .|.++-|-+..     .+....+  ..+  ..|.+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y--------~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~  152 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY--------RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS  152 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEec--------cceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence            3221  110011111111111111222 224555544        67777666532     2233333  223  23999


Q ss_pred             EEEcCCCCEEEEEec
Q psy3337         266 LAVRDDGRFVAVGTM  280 (297)
Q Consensus       266 ~~~s~dg~~l~~~~~  280 (297)
                      +.++|.-+.|++|+.
T Consensus       153 ~vy~p~h~LLlVgG~  167 (282)
T PF15492_consen  153 AVYHPKHRLLLVGGC  167 (282)
T ss_pred             EEEcCCCCEEEEecc
Confidence            999999888887764

>KOG4640|consensus

Probab=97.83  E-value=0.0001  Score=64.98  Aligned_cols=78  Identities=15%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCee-EEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID-DVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE  196 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~  196 (297)
                      ..|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            346688999999999999999999999987 777888887777777 999999999999999999999999998877666

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.81  E-value=0.006  Score=54.96  Aligned_cols=183  Identities=15%  Similarity=0.153  Sum_probs=108.8

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCC-------------------cE-EEEEEecCCCEEEEEcCCC---------------
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSES-------------------LQ-RVVRLSRNGDLMVTGGTDG---------------  139 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~-------------------~v-~~~~~s~~g~~l~s~~~d~---------------  139 (297)
                      ++.+.- |..+|+.+-.+......                   .| ...++.+.+..++.+..++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            456665 99999887766522111                   01 1234445566777776665               


Q ss_pred             ---cEEEEeCCCCeeeEEeccccCCee------EEEEc----cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeccCCC
Q psy3337         140 ---HLRLWSFPKMKPLLHIEAHSKEID------DVDFS----ISGE---QIVSIAKDGKAFVWNSKNGSLSKELKWNTPD  203 (297)
Q Consensus       140 ---~i~iwd~~~~~~~~~~~~~~~~v~------~~~~s----p~~~---~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~  203 (297)
                         .|.-+|..+|+.+..++.-.....      ...+.    -++.   .++.++.+|.+...|.++|+.+-......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               799999999998877652111111      11111    1333   57778889999999999999887654210  


Q ss_pred             CceEEEEeeeeeeeeeCCCCeEEEEeccCc----------ccccCCCCeEEEEeCCCCceEEEeccC---------CCe-
Q psy3337         204 NIKYLFKRCRYGLVEDSPKRSRLFTLANPL----------AQNKRGISYVQQWDVDSGRLRLAREMK---------ESL-  263 (297)
Q Consensus       204 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~----------~~~g~~d~~i~~wd~~~~~~~~~~~~~---------~~v-  263 (297)
                                 ..++.+|  ..++......          ......++.|...|+.+|+.+-.....         ... 
T Consensus       332 -----------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~  398 (488)
T cd00216         332 -----------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW  398 (488)
T ss_pred             -----------cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence                       0022233  2222211100          001224678999999998877665443         111 


Q ss_pred             -EEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         264 -SALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       264 -~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       ..+.  ..+..|++++. ||.|+.+|..+|+.+
T Consensus       399 ~~~~~--~~g~~v~~g~~-dG~l~ald~~tG~~l  429 (488)
T cd00216         399 GGSLA--TAGNLVFAGAA-DGYFRAFDATTGKEL  429 (488)
T ss_pred             CcceE--ecCCeEEEECC-CCeEEEEECCCCcee
Confidence             1122  25678888888 999999999999865

The alignment model contains an 8-bladed beta-propeller.

>KOG1920|consensus

Probab=97.80  E-value=0.0021  Score=61.13  Aligned_cols=168  Identities=10%  Similarity=0.056  Sum_probs=106.0

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEc----CCCc
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS----KNGS  192 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~----~~~~  192 (297)
                      .+.|.++.|..+.+.++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+.++++.+.+-    -.-+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            367999999999999999999999999988765432 22234567999999999999999988888876432    1111


Q ss_pred             ee-------------------eeeeccCCCCceE----EE---------EeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         193 LS-------------------KELKWNTPDNIKY----LF---------KRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       193 ~~-------------------~~~~~~~~~~~~~----~~---------~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .+                   ..+.+..  +...    ..         ....-..|.|--||.++++...   ......
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~--gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~---~~~~~~  221 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSE--GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV---ESETGT  221 (1265)
T ss_pred             ccccccccccccceecccccceeeecch--hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE---eccCCc
Confidence            11                   1111100  0000    00         0001123888899998887432   112233


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecC--CCeEEEEEeC
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMF--TGSVFVYIAF  291 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~--dg~i~vwd~~  291 (297)
                      +.|++||.. |.+-..-..... -.+++|-|.|..+++-...  |+.|.+|.-.
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN  274 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN  274 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence            899999988 433222111122 5789999999998875421  5678888743

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.79  E-value=0.0013  Score=57.90  Aligned_cols=141  Identities=13%  Similarity=0.193  Sum_probs=79.8

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE  196 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~  196 (297)
                      .-....+.++|+|++++.+ .||.-.|+.....+...     .+.-..+.|.+.+ .+|+-....+|.++.--+......
T Consensus        32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence            3346799999999998885 57777788744433322     2345678898844 567666688899973222222223


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVA  276 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  276 (297)
                      +....  ...-+          |.  |..|...+         ++.|.+||+.+++.++.+.... |..+.|+++|.+++
T Consensus       105 i~~~~--~~~~I----------f~--G~LL~~~~---------~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~va  160 (443)
T PF04053_consen  105 IKLPF--SVEKI----------FG--GNLLGVKS---------SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVA  160 (443)
T ss_dssp             ---SS---EEEE----------E---SSSEEEEE---------TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEE
T ss_pred             EcCCc--ccceE----------Ec--CcEEEEEC---------CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEE
Confidence            32211  00111          11  66565543         4579999999999999998664 89999999999999


Q ss_pred             EEecCCCeEEEEEe
Q psy3337         277 VGTMFTGSVFVYIA  290 (297)
Q Consensus       277 ~~~~~dg~i~vwd~  290 (297)
                      ..+.  ..+.|++.
T Consensus       161 l~t~--~~i~il~~  172 (443)
T PF04053_consen  161 LVTK--DSIYILKY  172 (443)
T ss_dssp             EE-S---SEEEEEE
T ss_pred             EEeC--CeEEEEEe
Confidence            9984  56777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.76  E-value=0.00064  Score=59.60  Aligned_cols=128  Identities=15%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             CeeeEEeccccCCeeEEEEccCCCEEEEEe---CC-CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe
Q psy3337         149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIA---KD-GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS  224 (297)
Q Consensus       149 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~d-~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  224 (297)
                      +.....+......+...+|+|++..++..+   .. ..++++|+.+++....+......           ....|+|||+
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~-----------~~P~fspDG~  250 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN-----------GAPAFSPDGS  250 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-----------CCccCCCCCC
Confidence            444445554556778889999998766542   22 45889999887665444322111           1245899999


Q ss_pred             EEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCe--EEEEEeCCc
Q psy3337         225 RLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGS--VFVYIAFSL  293 (297)
Q Consensus       225 ~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~--i~vwd~~~~  293 (297)
                      .|+.+..     ......|+++|+..++... +..... -..-.|+|||++|+..+.+.|.  |.+.++...
T Consensus       251 ~l~f~~~-----rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         251 KLAFSSS-----RDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             EEEEEEC-----CCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            9998876     5566688899999777444 444333 4578899999999888764665  455555444

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.68  E-value=0.0068  Score=52.71  Aligned_cols=170  Identities=14%  Similarity=0.158  Sum_probs=91.5

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE--ecc------ccCCeeEEEEcc-----CC---CEEEEEe
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH--IEA------HSKEIDDVDFSI-----SG---EQIVSIA  178 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~--~~~------~~~~v~~~~~sp-----~~---~~l~s~~  178 (297)
                      ...++|++++.|.-| ++|.|..+|.+.|.|++....+..  +..      ....|+++.|..     |+   -.+++|.
T Consensus        84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            458899999998555 999999999999999988776654  222      234688888863     22   3678888


Q ss_pred             CCCcEEEEEcC--C-CceeeeeeccC-CCCceEEEEeeeee------eeee-------C---CCCeEEEEeccCcccccC
Q psy3337         179 KDGKAFVWNSK--N-GSLSKELKWNT-PDNIKYLFKRCRYG------LVED-------S---PKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       179 ~d~~v~lwd~~--~-~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~-------s---~~~~~l~~~~~~~~~~g~  238 (297)
                      ..|.+.+|.+.  . +.....+.... ... .....-+.+.      .++-       .   +...+++.+         
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~-~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---------  232 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHD-SPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---------  232 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS-----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE---------
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCC-CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---------
Confidence            89999999764  1 11111111110 000 0000000000      0000       0   001122222         


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCC-eEEEEEc-----CCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKES-LSALAVR-----DDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s-----~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+..++++...+.+.......... ...+++-     ..+..|++-.. +|.|++|.+..++.+
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~-~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN-NGSIRIYSLPSLKEI  295 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET-TSEEEEEETTT--EE
T ss_pred             cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC-CCcEEEEECCCchHh
Confidence            268899999998777665552222 4455553     35667888888 999999999988765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.012  Score=51.21  Aligned_cols=156  Identities=14%  Similarity=0.124  Sum_probs=110.3

Q ss_pred             EEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceee
Q psy3337         120 QRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK---DGKAFVWNSKNGSLSK  195 (297)
Q Consensus       120 v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---d~~v~lwd~~~~~~~~  195 (297)
                      -..+++++.+. ..++...++.|.+.|..+.+......--. ....++++|++..+..+..   ++++.+.|..+...+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            35778888886 45555567899999987766655544222 5678999999987776655   6889999988887776


Q ss_pred             eeecc-CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEE-----EeccCCCeEEEEEc
Q psy3337         196 ELKWN-TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRL-----AREMKESLSALAVR  269 (297)
Q Consensus       196 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~-----~~~~~~~v~~~~~s  269 (297)
                      ..... .|            ..++++|+|..++.+..       .++.|.+.|.......+     ..........+.++
T Consensus       155 ~~~vG~~P------------~~~a~~p~g~~vyv~~~-------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~  215 (381)
T COG3391         155 TIPVGNTP------------TGVAVDPDGNKVYVTNS-------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD  215 (381)
T ss_pred             EEecCCCc------------ceEEECCCCCeEEEEec-------CCCeEEEEeCCCcceeccccccccccCCCCceEEEC
Confidence            64321 12            13778999998888653       48899999977655553     12223336789999


Q ss_pred             CCCCEEEEEecCC--CeEEEEEeCCcee
Q psy3337         270 DDGRFVAVGTMFT--GSVFVYIAFSLQM  295 (297)
Q Consensus       270 ~dg~~l~~~~~~d--g~i~vwd~~~~~~  295 (297)
                      |+|.++.+....+  +.+...|..++..
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            9999877666513  5888888877654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.65  E-value=0.0076  Score=54.31  Aligned_cols=202  Identities=11%  Similarity=0.056  Sum_probs=109.4

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCC-----CcEE--EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC--e
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSE-----SLQR--VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE--I  162 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~-----~~v~--~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v  162 (297)
                      +..++.+.- |..+|+.+-.+.....     ..+.  .+.+. ++..++.++.++.|+-+|.++|+.+..+......  -
T Consensus        67 ~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~  145 (488)
T cd00216          67 TTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPG  145 (488)
T ss_pred             eCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcc
Confidence            444566666 8888887766541211     0110  11111 2257888889999999999999998777543321  0


Q ss_pred             eEEEEcc--CCCEEEEEe---------CCCcEEEEEcCCCceeeeeeccCCCCceE---------E-EE-eeeeeeeeeC
Q psy3337         163 DDVDFSI--SGEQIVSIA---------KDGKAFVWNSKNGSLSKELKWNTPDNIKY---------L-FK-RCRYGLVEDS  220 (297)
Q Consensus       163 ~~~~~sp--~~~~l~s~~---------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~---------~-~~-~~~~~~~~~s  220 (297)
                      ..+.-+|  .+..++.++         .++.+..+|..+|+.+-.+....+.....         . .. .......++.
T Consensus       146 ~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d  225 (488)
T cd00216         146 YTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD  225 (488)
T ss_pred             eEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe
Confidence            1111122  123455543         36789999999999887765432110000         0 00 0001123344


Q ss_pred             CCCeEEEEeccCc----------ccccCCCCeEEEEeCCCCceEEEeccCCC-e------EEEEEc----CCCC---EEE
Q psy3337         221 PKRSRLFTLANPL----------AQNKRGISYVQQWDVDSGRLRLAREMKES-L------SALAVR----DDGR---FVA  276 (297)
Q Consensus       221 ~~~~~l~~~~~~~----------~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v------~~~~~s----~dg~---~l~  276 (297)
                      +.+..++.....-          ......++.|.-+|..+|+.+-.+..... .      ....+.    -+|.   .++
T Consensus       226 ~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~  305 (488)
T cd00216         226 PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIV  305 (488)
T ss_pred             CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence            4444455432200          00001224799999999998876543211 1      111111    2343   577


Q ss_pred             EEecCCCeEEEEEeCCceec
Q psy3337         277 VGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +++. +|.+..+|..+|+.+
T Consensus       306 ~g~~-~G~l~ald~~tG~~~  324 (488)
T cd00216         306 HAPK-NGFFYVLDRTTGKLI  324 (488)
T ss_pred             EECC-CceEEEEECCCCcEe
Confidence            8888 999999999999864

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.65  E-value=0.0066  Score=49.08  Aligned_cols=185  Identities=10%  Similarity=0.065  Sum_probs=105.7

Q ss_pred             EeeCCCeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCC-----CcEEEEeCCCC-eeeEEeccccCCeeEEEEccCCCEE
Q psy3337         102 GFKTFDSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTD-----GHLRLWSFPKM-KPLLHIEAHSKEIDDVDFSISGEQI  174 (297)
Q Consensus       102 ~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l  174 (297)
                      |....+...++. ......--.-.|||||.+|...-.|     |.|-|||.+.+ ..+..+..|.-....+.|.+||+.+
T Consensus        97 D~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtl  176 (366)
T COG3490          97 DPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTL  176 (366)
T ss_pred             CCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEE
Confidence            666666555554 1111122244689999998875443     67999998743 4567888888888999999999998


Q ss_pred             EEEeCC------------------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         175 VSIAKD------------------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       175 ~s~~~d------------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      +.+...                  -.+.+.|..+|..+.+...+...      ....+..+...+||..++.+..    .
T Consensus       177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l------~~lSiRHld~g~dgtvwfgcQy----~  246 (366)
T COG3490         177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL------RQLSIRHLDIGRDGTVWFGCQY----R  246 (366)
T ss_pred             EEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh------hhcceeeeeeCCCCcEEEEEEe----e
Confidence            876431                  12334444455444333221100      1112234666777776666543    1


Q ss_pred             cCC-CCeEEEEeCCCCceEEEeccC--------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRG-ISYVQQWDVDSGRLRLAREMK--------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~-d~~i~~wd~~~~~~~~~~~~~--------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |.. |----+=....++.+..+...        ..|-+++.+.+..+++..+...+...+||..+|..+
T Consensus       247 G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv  315 (366)
T COG3490         247 GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV  315 (366)
T ss_pred             CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence            111 111111112224444444332        126788888766666655552667889999998765

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.63  E-value=0.011  Score=52.03  Aligned_cols=161  Identities=16%  Similarity=0.158  Sum_probs=87.1

Q ss_pred             EEEEEEecCCCEEEEE-cCC----CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCC-----------cE
Q psy3337         120 QRVVRLSRNGDLMVTG-GTD----GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG-----------KA  183 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~-~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~-----------~v  183 (297)
                      +....+||+|+++|.+ +..    ..++++|+.+++.+...-... ....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999988854 233    359999999997664321111 122399999988877665433           37


Q ss_pred             EEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC-CeEEEEeCCCC-----ceEEEe
Q psy3337         184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI-SYVQQWDVDSG-----RLRLAR  257 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d-~~i~~wd~~~~-----~~~~~~  257 (297)
                      +.|.+.+...-..+....+.....      +..+..++|+++|+....     ...+ ..+++.|+..+     +.....
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~------~~~~~~s~d~~~l~i~~~-----~~~~~s~v~~~d~~~~~~~~~~~~~l~  273 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFW------FVSVSRSKDGRYLFISSS-----SGTSESEVYLLDLDDGGSPDAKPKLLS  273 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTS------EEEEEE-TTSSEEEEEEE-----SSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcE------EEEEEecCcccEEEEEEE-----ccccCCeEEEEeccccCCCcCCcEEEe
Confidence            777776654332222222222110      113567999998876554     3334 78999999874     333333


Q ss_pred             ccCCCe-EEEEEcCCCCEEEEEecC--CCeEEEEEeCCc
Q psy3337         258 EMKESL-SALAVRDDGRFVAVGTMF--TGSVFVYIAFSL  293 (297)
Q Consensus       258 ~~~~~v-~~~~~s~dg~~l~~~~~~--dg~i~vwd~~~~  293 (297)
                      .....+ ..+... ++.+++.....  .+.|...++.+.
T Consensus       274 ~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~  311 (414)
T PF02897_consen  274 PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADP  311 (414)
T ss_dssp             ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTST
T ss_pred             CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccc
Confidence            333333 333333 44444333220  345555555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2114|consensus

Probab=97.62  E-value=0.0033  Score=57.79  Aligned_cols=181  Identities=10%  Similarity=0.107  Sum_probs=101.0

Q ss_pred             CCCCceEEEEeeCCCeEEEEecCCCCc-EEEEEEecCCCEEEEEcCCCc-----EEEEeCCCC------eee--EEecc-
Q psy3337          93 DSKEKNLRFGFKTFDSVQTVFAGSESL-QRVVRLSRNGDLMVTGGTDGH-----LRLWSFPKM------KPL--LHIEA-  157 (297)
Q Consensus        93 ~~~d~~i~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~~d~~-----i~iwd~~~~------~~~--~~~~~-  157 (297)
                      |+.+|.|.+-...-+.++.+. .+... |..+-...+.++|++-+.|..     ++||+++.-      .++  ..+.. 
T Consensus        41 gt~~G~V~~Ln~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~  119 (933)
T KOG2114|consen   41 GTADGRVVILNSSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTI  119 (933)
T ss_pred             eeccccEEEecccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeecc
Confidence            444444444112222334444 45444 444433334478888777654     899998532      223  12222 


Q ss_pred             ----ccCCeeEEEEccCCCEEEEEeCCCcEEEEE--cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         158 ----HSKEIDDVDFSISGEQIVSIAKDGKAFVWN--SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       158 ----~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                          ...++.+++.+.+-..++.|-.+|.|.++.  +...+-.+....|.        ....+..+++..++..++.+.-
T Consensus       120 ~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~--------~~~pITgL~~~~d~~s~lFv~T  191 (933)
T KOG2114|consen  120 KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR--------GKEPITGLALRSDGKSVLFVAT  191 (933)
T ss_pred             CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc--------CCCCceeeEEecCCceeEEEEe
Confidence                245788999999988999999999999884  21111111111111        0112234556666665322221


Q ss_pred             CcccccCCCCeEEEEeCCCCce-EEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         232 PLAQNKRGISYVQQWDVDSGRL-RLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       232 ~~~~~g~~d~~i~~wd~~~~~~-~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                              ...|.+|.+....+ ...+..++. +.|.++++....+++++  +..+.+||...
T Consensus       192 --------t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~  244 (933)
T KOG2114|consen  192 --------TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDG  244 (933)
T ss_pred             --------cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCC
Confidence                    46788998884332 444666665 88888887655355554  45788888753

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.61  E-value=0.0052  Score=56.30  Aligned_cols=156  Identities=12%  Similarity=0.039  Sum_probs=85.1

Q ss_pred             CcEEEEEEecCCCEEEEEc------CCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC-CcEEEEEc
Q psy3337         118 SLQRVVRLSRNGDLMVTGG------TDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD-GKAFVWNS  188 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-~~v~lwd~  188 (297)
                      ..+...+++|+|+.++..-      .|.  .|.+++. .+.....+.+  ...+...|+|+|..|++.... ..+++.+-
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4677899999998877654      243  4555554 2222222233  247889999998888777543 22333332


Q ss_pred             CCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE---EeCCCCceEEE-----e-cc
Q psy3337         189 KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ---WDVDSGRLRLA-----R-EM  259 (297)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~---wd~~~~~~~~~-----~-~~  259 (297)
                      .....+..+.........  .....+..+.|||||..++.+..         +.|++   -....|. ...     + ..
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~---------g~v~Va~Vvr~~~G~-~~l~~~~~l~~~  494 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG---------GKVYLAVVEQTEDGQ-YALTNPREVGPG  494 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC---------CEEEEEEEEeCCCCc-eeecccEEeecc
Confidence            211122211111100000  01123567889999999998653         56666   4434443 111     2 22


Q ss_pred             CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         260 KES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       260 ~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      -.. +.++.|..++.++ ++.. ++...+|.+
T Consensus       495 l~~~~~~l~W~~~~~L~-V~~~-~~~~~v~~v  524 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLV-VGRS-DPEHPVWYV  524 (591)
T ss_pred             cCCccccceEecCCEEE-EEec-CCCCceEEE
Confidence            223 6889999998855 5555 554445543

>KOG1832|consensus

Probab=97.58  E-value=7.6e-05  Score=68.42  Aligned_cols=126  Identities=18%  Similarity=0.232  Sum_probs=95.2

Q ss_pred             eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         151 PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       151 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                      ....|..|....+|++|+.+.++|+.|+..|.|++|++.+|.......+|...          +..+.-+.+|..+++.+
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa----------vT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA----------VTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc----------cccccccCCcceeeeec
Confidence            44567788889999999999999999999999999999999988888877632          22344577888877754


Q ss_pred             cCcccccCCCCeEEEEeCCC-CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         231 NPLAQNKRGISYVQQWDVDS-GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .      +...-..+|++.+ +.....+..   -.++.|+..-..-+.|+. .....+||++++.++
T Consensus      1163 s------~S~PlsaLW~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~-~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1163 S------SSSPLSALWDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTE-ADDALLYDVQTCSPL 1219 (1516)
T ss_pred             c------ccCchHHHhccccccCccccccc---cceeehhhhHHHHHhccc-ccceEEEecccCcHH
Confidence            3      2234567899876 555555544   457788876666667776 678899999998765

>KOG1275|consensus

Probab=97.56  E-value=0.00071  Score=62.41  Aligned_cols=147  Identities=11%  Similarity=0.094  Sum_probs=101.2

Q ss_pred             CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceE
Q psy3337         128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKY  207 (297)
Q Consensus       128 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~  207 (297)
                      ++..++-|+....+..+|+++.+..+...-....|.-+..  +++++.+|...|+|.+-|+++.+.++++..|....   
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si---  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI---  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce---
Confidence            3456777888888889999888766655433434555554  57899999999999999999999999999986332   


Q ss_pred             EEEeeeeeeeeeCCCCeEEEEeccCccc-ccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCC-CCEEEEEecCCCeE
Q psy3337         208 LFKRCRYGLVEDSPKRSRLFTLANPLAQ-NKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDD-GRFVAVGTMFTGSV  285 (297)
Q Consensus       208 ~~~~~~~~~~~~s~~~~~l~~~~~~~~~-~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~~dg~i  285 (297)
                               ..|+-.|+.|++++..... .-..|.-|+|||+++.+.+..+..+-...-+.|.|. ...+++.+. .|..
T Consensus       221 ---------SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~-sGq~  290 (1118)
T KOG1275|consen  221 ---------SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQ-SGQF  290 (1118)
T ss_pred             ---------eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEec-ccce
Confidence                     2345667777777653111 112478899999999777766655544445566663 334555555 6666


Q ss_pred             EEEE
Q psy3337         286 FVYI  289 (297)
Q Consensus       286 ~vwd  289 (297)
                      .+-|
T Consensus       291 q~vd  294 (1118)
T KOG1275|consen  291 QFVD  294 (1118)
T ss_pred             eecc
Confidence            6665

>KOG4649|consensus

Probab=97.54  E-value=0.024  Score=45.31  Aligned_cols=127  Identities=12%  Similarity=0.062  Sum_probs=87.8

Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEE
Q psy3337         130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLF  209 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~  209 (297)
                      .+++.|+..+.+.--|..+|+....-. -...+.+-+.- -|.+++.|+..|.+++.+..+|.....+.........   
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~---   98 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR---   98 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc---
Confidence            567788888888888988888765332 12223222222 4668999999999999999999877766544321111   


Q ss_pred             EeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcC-CCCEEE
Q psy3337         210 KRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRD-DGRFVA  276 (297)
Q Consensus       210 ~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~-dg~~l~  276 (297)
                             -...+++..++.        |+.|++.+..|..+..++...+.... -.+.++.| ++.+.+
T Consensus        99 -------a~~d~~~glIyc--------gshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen   99 -------AQCDFDGGLIYC--------GSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             -------eEEcCCCceEEE--------ecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence                   123678888988        66799999999999888888776655 45566666 443333

>KOG2114|consensus

Probab=97.53  E-value=0.0033  Score=57.78  Aligned_cols=152  Identities=18%  Similarity=0.208  Sum_probs=95.5

Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC-eeEEEEccCCCEEEEEeCCC-----cEEEEEcCCC-----
Q psy3337         123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE-IDDVDFSISGEQIVSIAKDG-----KAFVWNSKNG-----  191 (297)
Q Consensus       123 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~~~d~-----~v~lwd~~~~-----  191 (297)
                      -+|++.+..++.|+.+|.|.+++ ++.+.++.|+++... |..+....+..+|++.+.|.     .+++||+..-     
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            34678888999999999998887 445556788888777 55555544556788777664     4899998632     


Q ss_pred             -ceeee--eec-cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-----CceEEEeccCCC
Q psy3337         192 -SLSKE--LKW-NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-----GRLRLAREMKES  262 (297)
Q Consensus       192 -~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-----~~~~~~~~~~~~  262 (297)
                       +++..  +.. ..|..      +.....++.+.+-+.++.        |-.+|.|..+.-+-     .+......+.++
T Consensus       108 P~c~~~~ri~~~~np~~------~~p~s~l~Vs~~l~~Iv~--------Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p  173 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTN------PSPASSLAVSEDLKTIVC--------GFTNGLVICYKGDILRDRGSRQDYSHRGKEP  173 (933)
T ss_pred             cceeeeeeeeccCCCCC------CCcceEEEEEccccEEEE--------EecCcEEEEEcCcchhccccceeeeccCCCC
Confidence             12211  111 11211      111223556666565665        55689998886432     122233344566


Q ss_pred             eEEEEEcCCCCE-EEEEecCCCeEEEEEeC
Q psy3337         263 LSALAVRDDGRF-VAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       263 v~~~~~s~dg~~-l~~~~~~dg~i~vwd~~  291 (297)
                      |+.+++..++.. +.+++  -..|.+|.+.
T Consensus       174 ITgL~~~~d~~s~lFv~T--t~~V~~y~l~  201 (933)
T KOG2114|consen  174 ITGLALRSDGKSVLFVAT--TEQVMLYSLS  201 (933)
T ss_pred             ceeeEEecCCceeEEEEe--cceeEEEEec
Confidence            999999999887 33343  4578888876

>KOG3621|consensus

Probab=97.52  E-value=0.00098  Score=59.78  Aligned_cols=123  Identities=14%  Similarity=0.093  Sum_probs=87.8

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE-EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL-HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~  194 (297)
                      |...|.--+++..+++++.|+.-|.+++|+-..++... ...+..+.+.....+++..++|.|+..|.|.++-+..+.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44556566677788999999999999999976655432 22234556677788998889999999999999988764332


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      ..... .|..   .-+.+++.+++|++++..+++        |...|.|..-.+.+
T Consensus       112 ~~~~~-t~~d---~~~~~rVTal~Ws~~~~k~ys--------GD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYV-TPCD---KSHKCRVTALEWSKNGMKLYS--------GDSQGKVVLTELDS  155 (726)
T ss_pred             cceee-cccc---ccCCceEEEEEecccccEEee--------cCCCceEEEEEech
Confidence            11111 1111   114567788999999999999        66789998888776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.52  E-value=0.025  Score=45.85  Aligned_cols=165  Identities=13%  Similarity=0.187  Sum_probs=90.3

Q ss_pred             CCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccc-cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q psy3337         115 GSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAH-SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~  192 (297)
                      +-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            5566699999999755 6667777888888886 57777766533 2457889998888777777678999999884321


Q ss_pred             -e-----eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC---CceEEE-----ec
Q psy3337         193 -L-----SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS---GRLRLA-----RE  258 (297)
Q Consensus       193 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~---~~~~~~-----~~  258 (297)
                       .     ...+....+     ......+-.++|+|.+..|+.+..        ..-..+|.+..   ...+..     +.
T Consensus        98 ~~~~~~~~~~~~l~~~-----~~~N~G~EGla~D~~~~~L~v~kE--------~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   98 TSLDRADVQKISLGFP-----NKGNKGFEGLAYDPKTNRLFVAKE--------RKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             TT--EEEEEEEE---S--------SS--EEEEEETTTTEEEEEEE--------SSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             cccchhhceEEecccc-----cCCCcceEEEEEcCCCCEEEEEeC--------CCChhhEEEccccCccceeeccccccc
Confidence             1     111211111     001123456899999888887654        33344444332   111111     11


Q ss_pred             ---c-CCCeEEEEEcCC-CCEEEEEecCCCeEEEEEeCCcee
Q psy3337         259 ---M-KESLSALAVRDD-GRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       259 ---~-~~~v~~~~~s~d-g~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                         . ...+.+++++|. |.+++.... +..|..+| .+|+.
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~e-s~~l~~~d-~~G~~  204 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDE-SRLLLELD-RQGRV  204 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETT-TTEEEEE--TT--E
T ss_pred             cccceeccccceEEcCCCCeEEEEECC-CCeEEEEC-CCCCE
Confidence               1 122889999995 455566665 78888888 45543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.48  E-value=0.035  Score=44.98  Aligned_cols=182  Identities=10%  Similarity=0.124  Sum_probs=96.3

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe------eeEEec-----cccC
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK------PLLHIE-----AHSK  160 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~------~~~~~~-----~~~~  160 (297)
                      ....+.|.- +. +|+.++.+.-.-.+..-.|++.-++.++++--.++.+.++++....      ....+.     .+..
T Consensus        40 ~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~  118 (248)
T PF06977_consen   40 QDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNK  118 (248)
T ss_dssp             ETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS
T ss_pred             ECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCc
Confidence            334445544 54 5777777762223446789998888877777778999999883221      111221     2455


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCC---CceeeeeeccC-CCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKN---GSLSKELKWNT-PDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      .+-.++|+|.++.|+.+-......+|.+..   ...+....... +.   .......+..+.++|....|+..+.     
T Consensus       119 G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~S~l~~~p~t~~lliLS~-----  190 (248)
T PF06977_consen  119 GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD---DKLFVRDLSGLSYDPRTGHLLILSD-----  190 (248)
T ss_dssp             --EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH----HT--SS---EEEEETTTTEEEEEET-----
T ss_pred             ceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc---ccceeccccceEEcCCCCeEEEEEC-----
Confidence            689999999888777777666666766543   11111111000 00   0001112345778888766666644     


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCC----------CeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKE----------SLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~----------~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                        ....|..+| .+|+.+..+....          ..-.|+|.++|++.+++ + -+..++|
T Consensus       191 --es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-E-pNlfy~f  247 (248)
T PF06977_consen  191 --ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-E-PNLFYRF  247 (248)
T ss_dssp             --TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-T-TTEEEEE
T ss_pred             --CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-C-CceEEEe
Confidence              578888999 5577766554322          37899999998665555 4 5666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640|consensus

Probab=97.47  E-value=0.00063  Score=60.25  Aligned_cols=72  Identities=17%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             eeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC-CeE-EEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         215 GLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE-SLS-ALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       215 ~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~-~v~-~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..+.|+|.-..+|..        ..+|.|.+..+. .+.+..+.-++ .++ +++|.|||+.|++|-. ||+|++.|+.+
T Consensus        24 ~~~ewnP~~dLiA~~--------t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k-dG~I~L~Dve~   93 (665)
T KOG4640|consen   24 KRIEWNPKMDLIATR--------TEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK-DGTIRLHDVEK   93 (665)
T ss_pred             EEEEEcCccchhhee--------ccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec-CCeEEEEEccC
Confidence            347789998888884        448988888888 66666776443 355 9999999999999999 99999999999


Q ss_pred             ceec
Q psy3337         293 LQMC  296 (297)
Q Consensus       293 ~~~~  296 (297)
                      +..+
T Consensus        94 ~~~l   97 (665)
T KOG4640|consen   94 GGRL   97 (665)
T ss_pred             CCce
Confidence            8765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.44  E-value=0.039  Score=46.86  Aligned_cols=171  Identities=16%  Similarity=0.220  Sum_probs=96.7

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEec---C----CCEEEEEcC----------CCcEEEEeCCCC----eeeEEe
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSR---N----GDLMVTGGT----------DGHLRLWSFPKM----KPLLHI  155 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~---~----g~~l~s~~~----------d~~i~iwd~~~~----~~~~~~  155 (297)
                      .|++ |..+.+.+..+.-.....+++++.-.   +    -.+|+.|..          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5777 88888777666523334455554332   2    356776642          288999999873    122222


Q ss_pred             --ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC
Q psy3337         156 --EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGS-LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP  232 (297)
Q Consensus       156 --~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~  232 (297)
                        ....++|++++-. ++. |+.+. .+.|.+|++...+ ....-..+.+.   +.        +.....+.+++.    
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~---~i--------~sl~~~~~~I~v----  144 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPF---YI--------TSLSVFKNYILV----  144 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSS---SE--------EEEEEETTEEEE----
T ss_pred             EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceE---EE--------EEEeccccEEEE----
Confidence              2346789888876 444 44443 4789999998776 33332222211   11        111222445665    


Q ss_pred             cccccCCCCeEEEEeCCC-CceEEEecc---CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         233 LAQNKRGISYVQQWDVDS-GRLRLAREM---KESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~-~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                          |+....+.++.... ...+..+..   ...++++.|-+|+..++.+.. +|.+.++...
T Consensus       145 ----gD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~-~gnl~~l~~~  202 (321)
T PF03178_consen  145 ----GDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK-DGNLFVLRYN  202 (321)
T ss_dssp             ----EESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET-TSEEEEEEE-
T ss_pred             ----EEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC-CCeEEEEEEC
Confidence                44466677664433 222222222   223889999877788999998 9999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.41  E-value=0.029  Score=49.37  Aligned_cols=175  Identities=15%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             eEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe-------ccccCCeeEEEEccC
Q psy3337          98 NLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-------EAHSKEIDDVDFSIS  170 (297)
Q Consensus        98 ~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~sp~  170 (297)
                      .|++-...|+.+..+...+ +.|.++.|+.+. .|+.-..||.+++||+.. +....+       .-....+....+..+
T Consensus        62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCCCCEeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence            4777556677777776344 789999999865 455667999999999863 321111       111122222233335


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCc-eeeeeeccCCCCce-EEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGS-LSKELKWNTPDNIK-YLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |-.+++  .++.+.+..--... ....+. ..|.... ............++.+....+....        ++.+.+.+-
T Consensus       139 GivvLt--~~~~~~~v~n~~~~~~~~~~~-~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~--------g~~i~~i~~  207 (410)
T PF04841_consen  139 GIVVLT--GNNRFYVVNNIDEPVKLRRLP-EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLAN--------GETIYIIDE  207 (410)
T ss_pred             CEEEEC--CCCeEEEEeCccccchhhccc-cCCCcccccccccccccceEeecCcceEEEEec--------CCEEEEEEc
Confidence            533333  34444443221111 111111 1111000 0000000000112333333333222        445554443


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      ...+.   +...+.+..+++||+|++||.-.. +|.+.+.+.
T Consensus       208 ~~~~~---i~~~~~i~~iavSpng~~iAl~t~-~g~l~v~ss  245 (410)
T PF04841_consen  208 NSFKQ---IDSDGPIIKIAVSPNGKFIALFTD-SGNLWVVSS  245 (410)
T ss_pred             ccccc---ccCCCCeEEEEECCCCCEEEEEEC-CCCEEEEEC
Confidence            32211   333456999999999999999998 999988764

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.37  E-value=0.033  Score=47.63  Aligned_cols=169  Identities=9%  Similarity=0.002  Sum_probs=86.7

Q ss_pred             EeeCCCeEEEEecCCCC-----cEEEEEEecCCCEEEEE-cCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337         102 GFKTFDSVQTVFAGSES-----LQRVVRLSRNGDLMVTG-GTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      |..||..+..+. .+..     .-+.=+|.+||+.|+.+ ..||  .+++.|+.+++..+.-.+.........++|+++.
T Consensus        16 D~~TG~~VtrLT-~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~   94 (386)
T PF14583_consen   16 DPDTGHRVTRLT-PPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA   94 (386)
T ss_dssp             -TTT--EEEE-S--TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred             CCCCCceEEEec-CCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence            667777776665 2222     22233678899665544 4454  5777788888866544433333446778898888


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC--------------cccccCC
Q psy3337         174 IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP--------------LAQNKRG  239 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--------------~~~~g~~  239 (297)
                      ++-......|+-.|+++.+....+..+.    .+.-.    .....+.++..++.+...              .+....-
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~----~~~g~----gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p  166 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPD----DWKGY----GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP  166 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--T----TEEEE----EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCc----ccccc----cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence            8776666789999998876654444332    11110    112224566665554321              1222334


Q ss_pred             CCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC-EEEEEe
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGT  279 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~  279 (297)
                      .+.|...|+.+|+....+.....+..+.|||... .|.-|.
T Consensus       167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH  207 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH  207 (386)
T ss_dssp             -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE
T ss_pred             CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEec
Confidence            6678888999998887777777799999999554 455544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.34  E-value=0.028  Score=48.49  Aligned_cols=82  Identities=11%  Similarity=0.032  Sum_probs=53.5

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe-cc-------c--------
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EA-------H--------  158 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-------~--------  158 (297)
                      .+.+.+ ++.+++...... . ...+....|||+|+.++... ++.|++++..++...+.- .+       -        
T Consensus        22 ~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             ceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            346777 888866544332 2 56677999999999999874 678999998777543211 11       0        


Q ss_pred             -cCCeeEEEEccCCCEEEEEeCC
Q psy3337         159 -SKEIDDVDFSISGEQIVSIAKD  180 (297)
Q Consensus       159 -~~~v~~~~~sp~~~~l~s~~~d  180 (297)
                       -+.-..+.||||+++|+....|
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccccceEECCCCCEEEEEEEC
Confidence             1223578899999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.31  E-value=0.0012  Score=38.28  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         260 KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       260 ~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ...|..++|+|...+||.++. +|.|.++.+ +++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~-~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTE-DGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEEC-CCeEEEEEC-CCcCc
Confidence            344999999999999999999 999999999 66653

>KOG1008|consensus

Probab=97.29  E-value=7.9e-05  Score=65.88  Aligned_cols=157  Identities=8%  Similarity=0.091  Sum_probs=101.1

Q ss_pred             CCCcEEEEEEecCC--CEEEEEcCCCcEEEEeCCCCee--eEEeccccCCeeEEEEcc-CCCEEEEEe----CCCcEEEE
Q psy3337         116 SESLQRVVRLSRNG--DLMVTGGTDGHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSI-SGEQIVSIA----KDGKAFVW  186 (297)
Q Consensus       116 h~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp-~~~~l~s~~----~d~~v~lw  186 (297)
                      ....+.|++++.+.  ..++.|..+|.|-+-.++...-  -....+|....++++|++ |.+.||.|-    .|..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            44556788877654  4688899999999988764332  234556778899999998 556676662    35679999


Q ss_pred             EcCCCc--eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeE
Q psy3337         187 NSKNGS--LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLS  264 (297)
Q Consensus       187 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~  264 (297)
                      |+.++-  +.........       .......++|-.+.+.+.+        |.....+.++|++........-....+.
T Consensus       135 di~s~ltvPke~~~fs~~-------~l~gqns~cwlrd~klvla--------Gm~sr~~~ifdlRqs~~~~~svnTk~vq  199 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSS-------TLDGQNSVCWLRDTKLVLA--------GMTSRSVHIFDLRQSLDSVSSVNTKYVQ  199 (783)
T ss_pred             ecccccCCCccccccccc-------cccCccccccccCcchhhc--------ccccchhhhhhhhhhhhhhhhhhhhhcc
Confidence            997652  1111110000       0011224667767776666        5557899999998422111111122377


Q ss_pred             EEEEcC-CCCEEEEEecCCCeEEEEE
Q psy3337         265 ALAVRD-DGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       265 ~~~~s~-dg~~l~~~~~~dg~i~vwd  289 (297)
                      .+.++| .+.++++-.  ||.|.+||
T Consensus       200 G~tVdp~~~nY~cs~~--dg~iAiwD  223 (783)
T KOG1008|consen  200 GITVDPFSPNYFCSNS--DGDIAIWD  223 (783)
T ss_pred             cceecCCCCCceeccc--cCceeecc
Confidence            888888 778887766  89999999

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.021  Score=47.95  Aligned_cols=141  Identities=11%  Similarity=0.068  Sum_probs=86.3

Q ss_pred             cEEEEEEecCCCEEEEEcC-----------CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC-CCcEEEE
Q psy3337         119 LQRVVRLSRNGDLMVTGGT-----------DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK-DGKAFVW  186 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-d~~v~lw  186 (297)
                      .-+.+...|+|.+.++-..           -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.. .+.|.-|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            3457788889886665433           133444443 45556666665666789999999988877755 4778887


Q ss_pred             EcCC--Cceee----eeec---cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe
Q psy3337         187 NSKN--GSLSK----ELKW---NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR  257 (297)
Q Consensus       187 d~~~--~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  257 (297)
                      ++..  +..-.    ....   -.|++            ++...+|.+.+++..       ..+.|.+|+.. |+.+..+
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG------------~~vDadG~lw~~a~~-------~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDG------------MAVDADGNLWVAAVW-------GGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCc------------eEEeCCCCEEEeccc-------CCceEEEECCC-CcEEEEE
Confidence            7652  21111    1100   01222            445566665543222       12489999999 9999888


Q ss_pred             ccC-CCeEEEEEc-CCCCEEEEEec
Q psy3337         258 EMK-ESLSALAVR-DDGRFVAVGTM  280 (297)
Q Consensus       258 ~~~-~~v~~~~~s-~dg~~l~~~~~  280 (297)
                      ..+ ..+++++|- |+.+.|.+.+.
T Consensus       251 ~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         251 KLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ECCCCCCccceEeCCCcCEEEEEec
Confidence            887 448999984 55666655443

>KOG1645|consensus

Probab=97.27  E-value=0.0011  Score=55.68  Aligned_cols=91  Identities=10%  Similarity=0.011  Sum_probs=69.2

Q ss_pred             EEEEeCCCCeeeEEeccccCCeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeee
Q psy3337         141 LRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE-QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVED  219 (297)
Q Consensus       141 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (297)
                      |++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+..+.           .+++.+|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~-----------~~wSC~w  243 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN-----------QIWSCCW  243 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC-----------Cceeeee
Confidence            66666666666666777888999999999776 78889999999999999887777766553           2234557


Q ss_pred             CCCC-eEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         220 SPKR-SRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       220 s~~~-~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      .-|. .+|+.        |...|.|.+||++.
T Consensus       244 Dlde~h~IYa--------Gl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  244 DLDERHVIYA--------GLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccCCcceeEE--------eccCceEEEEEccC
Confidence            6655 45555        55699999999986

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.054  Score=45.46  Aligned_cols=160  Identities=11%  Similarity=0.003  Sum_probs=90.4

Q ss_pred             EEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeecc
Q psy3337         122 VVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWN  200 (297)
Q Consensus       122 ~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~  200 (297)
                      +..|.++.. ++++--..+.|.-|+..+++. ..+.. ...+.++..-..+..|+++..  -+.+++..++..+..+...
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            445777766 455666678899999876643 23332 223344444334444554432  3667777655553333222


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEecc---CcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEE
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN---PLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVA  276 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~  276 (297)
                      .+..     ...+++.....|+|.+.++...   .-.-....-+.|+.+|. .+..+..+..+-. -+.++||||++.|.
T Consensus       105 ~~~~-----~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly  178 (307)
T COG3386         105 EDGL-----PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             cCCC-----CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEE
Confidence            1111     1134555667888887776443   00000122344555555 4666666665433 78999999998887


Q ss_pred             EEecCCCeEEEEEeC
Q psy3337         277 VGTMFTGSVFVYIAF  291 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~  291 (297)
                      .+....+.|+-|++.
T Consensus       179 ~aDT~~~~i~r~~~d  193 (307)
T COG3386         179 VADTPANRIHRYDLD  193 (307)
T ss_pred             EEeCCCCeEEEEecC
Confidence            776525788888764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.25  E-value=0.048  Score=44.57  Aligned_cols=148  Identities=19%  Similarity=0.184  Sum_probs=88.0

Q ss_pred             cEEEEEEecCCCEEEEEc-CCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE-cCCCcee-e
Q psy3337         119 LQRVVRLSRNGDLMVTGG-TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN-SKNGSLS-K  195 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd-~~~~~~~-~  195 (297)
                      .+...+++++++.++... .++.-.+|-...+.....+. ....+....|++++...+....+...+++. ..++... .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            578999999998776654 23333333333333333322 223688899999988777766666666663 3333222 1


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC---C------ceEEEecc-CCCeEE
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS---G------RLRLAREM-KESLSA  265 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~---~------~~~~~~~~-~~~v~~  265 (297)
                      .+....  .     . ..+..+.+||||..++.+..     ...++.|.+--+..   +      ..+..... ...+..
T Consensus       104 ~v~~~~--~-----~-~~I~~l~vSpDG~RvA~v~~-----~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen  104 EVDWPG--L-----R-GRITALRVSPDGTRVAVVVE-----DGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             Eecccc--c-----C-CceEEEEECCCCcEEEEEEe-----cCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            121111  0     0 04566889999999998764     44457777665432   3      11222222 234899


Q ss_pred             EEEcCCCCEEEEEec
Q psy3337         266 LAVRDDGRFVAVGTM  280 (297)
Q Consensus       266 ~~~s~dg~~l~~~~~  280 (297)
                      +.|.+++.+++.+..
T Consensus       171 v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  171 VAWSDDSTLVVLGRS  185 (253)
T ss_pred             eeecCCCEEEEEeCC
Confidence            999999988877766

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.24  E-value=0.015  Score=54.59  Aligned_cols=132  Identities=11%  Similarity=0.056  Sum_probs=82.7

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC-------CCEEEEEcCCCcEEEEeCCCC-eeeEEecc----ccCC
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN-------GDLMVTGGTDGHLRLWSFPKM-KPLLHIEA----HSKE  161 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~-------g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~----~~~~  161 (297)
                      ..+.|+- |++.|+.+.........+|..+  .|+       ....+.|-.++.+..||.+-. ..+..-..    ....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4445555 9999999999983333334444  442       345667778899999999843 22211111    2345


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      .+|++-..+| +||+|+.+|.|+|||- .|..-++.-   |.-      ...+..|..+.||++|++..         +.
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~l---p~l------G~pI~~iDvt~DGkwilaTc---------~t  639 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTAL---PGL------GDPIIGIDVTADGKWILATC---------KT  639 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcC---CCC------CCCeeEEEecCCCcEEEEee---------cc
Confidence            6777777676 7899999999999993 443211111   110      11233477899999988765         45


Q ss_pred             eEEEEeC
Q psy3337         242 YVQQWDV  248 (297)
Q Consensus       242 ~i~~wd~  248 (297)
                      .|.+++.
T Consensus       640 yLlLi~t  646 (794)
T PF08553_consen  640 YLLLIDT  646 (794)
T ss_pred             eEEEEEE
Confidence            6666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.24  E-value=0.034  Score=46.67  Aligned_cols=139  Identities=12%  Similarity=0.051  Sum_probs=90.0

Q ss_pred             CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeeccCCCCceEE
Q psy3337         139 GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------KDGKAFVWNSKNGSLSKELKWNTPDNIKYL  208 (297)
Q Consensus       139 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~  208 (297)
                      +.++++|..+++.+..+..  +..-.+..+|+++.+++++          ..-.|.+||..+-.+...+..+...  .. 
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~--R~-   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP--RA-   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS---B--
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc--hh-
Confidence            4799999999887777653  3344577899999888653          2346899999998888777654310  01 


Q ss_pred             EEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       209 ~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                      .....-+.++++.|+++++....      +--..|.|.|+..++.+..+.......-.-+. + +-+.+-+. ||.+.-.
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~------TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~-~-~~F~~lC~-DGsl~~v  162 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNF------TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG-N-RGFSMLCG-DGSLLTV  162 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEE------SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE-T-TEEEEEET-TSCEEEE
T ss_pred             eecccccceEEccCCcEEEEEcc------CCCCeEEEEECCCCceeeeecCCCEEEEEecC-C-CceEEEec-CCceEEE
Confidence            11112234678999998888664      33568999999999998888766532111112 2 34555666 8887777


Q ss_pred             EeC
Q psy3337         289 IAF  291 (297)
Q Consensus       289 d~~  291 (297)
                      .+.
T Consensus       163 ~Ld  165 (342)
T PF06433_consen  163 TLD  165 (342)
T ss_dssp             EET
T ss_pred             EEC
Confidence            765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.22  E-value=0.058  Score=49.11  Aligned_cols=155  Identities=17%  Similarity=0.225  Sum_probs=94.4

Q ss_pred             cEEEEeCCCCeeeEEeccccCCeeE---------EEEccCCC---EEEEEeCCCcEEEEEcCCCceeeeee------ccC
Q psy3337         140 HLRLWSFPKMKPLLHIEAHSKEIDD---------VDFSISGE---QIVSIAKDGKAFVWNSKNGSLSKELK------WNT  201 (297)
Q Consensus       140 ~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~sp~~~---~l~s~~~d~~v~lwd~~~~~~~~~~~------~~~  201 (297)
                      .|.-.|+++|+....++.....+++         +.+..+|+   .++.+..+|.+++.|.++|+.+....      ...
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            5777888999988877653333322         22223665   67789999999999999998863211      000


Q ss_pred             --------CC------------CceEEEEee-----eeeeeeeCCCCeEEEEeccCc--ccc------------------
Q psy3337         202 --------PD------------NIKYLFKRC-----RYGLVEDSPKRSRLFTLANPL--AQN------------------  236 (297)
Q Consensus       202 --------~~------------~~~~~~~~~-----~~~~~~~s~~~~~l~~~~~~~--~~~------------------  236 (297)
                              |.            .....+...     .+..++++|+..+++......  ...                  
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence                    00            000011011     123466778777666654421  000                  


Q ss_pred             -----cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 -----KRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 -----g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                           ....+.|.-+|+.+|+.+-....... ..++ +.-.+..++.++. +|.++.+|..||+.|
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~-~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTL-EGYFKAFDAKTGEEL  495 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECC-CCeEEEEECCCCCEe
Confidence                 01246799999999988877665433 2222 2225567777888 999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621|consensus

Probab=97.18  E-value=0.0042  Score=55.89  Aligned_cols=117  Identities=14%  Similarity=0.142  Sum_probs=79.3

Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      +...|.--+++..+.+++.|+.-|.+++|+-..+.. ..+......        ........+++..+++.        |
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~--------~~~~~~~vs~~e~lvAa--------g   94 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGAT--------GITCVRSVSSVEYLVAA--------G   94 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCcc--------ceEEEEEecchhHhhhh--------h
Confidence            344455556677888999999999999999655543 333221111        11112446777776666        6


Q ss_pred             CCCCeEEEEeCCCCc---eE--EEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         238 RGISYVQQWDVDSGR---LR--LAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~---~~--~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +..+.|.++-+..+.   ..  ..... |.. |++++|++|+..|.+|.. .|.|.+-.+.+
T Consensus        95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s  155 (726)
T KOG3621|consen   95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS-QGKVVLTELDS  155 (726)
T ss_pred             cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCC-CceEEEEEech
Confidence            668999999887632   12  22222 334 999999999999999999 99998877765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.17  E-value=0.066  Score=46.40  Aligned_cols=187  Identities=15%  Similarity=0.116  Sum_probs=89.9

Q ss_pred             CCCCCceEEE-EeeC----CCeEEEEecC--C----CCcEEEEEEecCCCEEEEEcC------CCcEEEEeCCCCeeeEE
Q psy3337          92 IDSKEKNLRF-GFKT----FDSVQTVFAG--S----ESLQRVVRLSRNGDLMVTGGT------DGHLRLWSFPKMKPLLH  154 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~----~~~~~~~~~~--h----~~~v~~~~~s~~g~~l~s~~~------d~~i~iwd~~~~~~~~~  154 (297)
                      .+-.+..|++ |..+    -+..+++...  +    -..-..+..-|+|+.++++-.      -|.+.++|-++.+....
T Consensus        93 PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~  172 (461)
T PF05694_consen   93 PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR  172 (461)
T ss_dssp             EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE
T ss_pred             eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce
Confidence            4555667887 7653    2333443310  1    122234445678988887643      24688888887777766


Q ss_pred             eccc---cCCeeEEEEccCCCEEEEEeC--------------------CCcEEEEEcCCCceeeeeeccCCCCceEEEEe
Q psy3337         155 IEAH---SKEIDDVDFSISGEQIVSIAK--------------------DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKR  211 (297)
Q Consensus       155 ~~~~---~~~v~~~~~sp~~~~l~s~~~--------------------d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  211 (297)
                      +...   ...-+++.|.|..+.++|+..                    ..++.+||+.+.+.++++.........+.+. 
T Consensus       173 We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvR-  251 (461)
T PF05694_consen  173 WEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVR-  251 (461)
T ss_dssp             --SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEE-
T ss_pred             eccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEE-
Confidence            6543   234567888998888888643                    2579999999999999987643211122221 


Q ss_pred             eeeeeeeeCCCCeEEE-EeccCcccccCCCCeEEEEeC-CCCc----eEEEeccC-----------------CC-eEEEE
Q psy3337         212 CRYGLVEDSPKRSRLF-TLANPLAQNKRGISYVQQWDV-DSGR----LRLAREMK-----------------ES-LSALA  267 (297)
Q Consensus       212 ~~~~~~~~s~~~~~l~-~~~~~~~~~g~~d~~i~~wd~-~~~~----~~~~~~~~-----------------~~-v~~~~  267 (297)
                           ....|+..+=+ .++.        ...|..|-- ..++    .+..+...                 .. |+.+.
T Consensus       252 -----flH~P~~~~gFvg~aL--------ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~  318 (461)
T PF05694_consen  252 -----FLHDPDANYGFVGCAL--------SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL  318 (461)
T ss_dssp             -----E-SSTT--EEEEEEE----------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred             -----ecCCCCccceEEEEec--------cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence                 22355544332 2222        445555543 3221    12222110                 23 79999


Q ss_pred             EcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         268 VRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       268 ~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +|.|.++|...+..+|.|+.||+..
T Consensus       319 iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  319 ISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             E-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             EccCCCEEEEEcccCCcEEEEecCC
Confidence            9999999999887799999999865

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3617|consensus

Probab=97.17  E-value=0.0014  Score=60.24  Aligned_cols=108  Identities=12%  Similarity=0.109  Sum_probs=80.0

Q ss_pred             eEEEEccCCCEEEEEeC----CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         163 DDVDFSISGEQIVSIAK----DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~----d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      +-..|+|...+|+.++.    .|.|.||- .+|++.....        +.   ....+++|+|..-.|+.        |-
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------~P---~hatSLCWHpe~~vLa~--------gw   78 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--------YP---VHATSLCWHPEEFVLAQ--------GW   78 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--------cc---eehhhhccChHHHHHhh--------cc
Confidence            34678998888887753    57788773 4665433322        11   12335889998866665        66


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .-|.+.+|...+.+.......|.. |..+.||++|..|+++.. -|.|.+|...
T Consensus        79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~-~g~v~lwr~d  131 (1416)
T KOG3617|consen   79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN-PGSVHLWRYD  131 (1416)
T ss_pred             ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC-CceeEEEEee
Confidence            789999999987666655555655 999999999999999999 9999999865

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.16  E-value=0.079  Score=43.11  Aligned_cols=171  Identities=12%  Similarity=0.054  Sum_probs=103.6

Q ss_pred             CCceEEE--EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCc-EEEEeCCCCeeeEEeccccCC--eeEEEEc
Q psy3337          95 KEKNLRF--GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGH-LRLWSFPKMKPLLHIEAHSKE--IDDVDFS  168 (297)
Q Consensus        95 ~d~~i~~--~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~s  168 (297)
                      .|++..+  -.+.|+++..+.  -...-..++|+|.. .-++.+-.-|+ ..++|....+....+...++.  --.=.||
T Consensus        45 ~dgs~g~a~~~eaGk~v~~~~--lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs  122 (366)
T COG3490          45 RDGSFGAATLSEAGKIVFATA--LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS  122 (366)
T ss_pred             cCCceeEEEEccCCceeeeee--cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC
Confidence            3455444  345566665553  23334478888854 55666666665 468898877655544332221  1123589


Q ss_pred             cCCCEEEEEeCC-----CcEEEEEcCCC-ceeeeeeccC--CCCceEEEEeeeeeeeeeCCCCeEEEEeccC--------
Q psy3337         169 ISGEQIVSIAKD-----GKAFVWNSKNG-SLSKELKWNT--PDNIKYLFKRCRYGLVEDSPKRSRLFTLANP--------  232 (297)
Q Consensus       169 p~~~~l~s~~~d-----~~v~lwd~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--------  232 (297)
                      |||.+|+..-.|     |.|-|||.+.+ +.+.++..|.  |.            .+.+.+||+.++.+...        
T Consensus       123 ~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH------------ev~lm~DGrtlvvanGGIethpdfg  190 (366)
T COG3490         123 PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH------------EVTLMADGRTLVVANGGIETHPDFG  190 (366)
T ss_pred             CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc------------eeEEecCCcEEEEeCCceecccccC
Confidence            999999877554     77999998743 4445554443  22            25578889888877541        


Q ss_pred             --cccccCCCCeEEEEeCCCCceEEEeccC-----CCeEEEEEcCCCCEEEEEe
Q psy3337         233 --LAQNKRGISYVQQWDVDSGRLRLAREMK-----ESLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       233 --~~~~g~~d~~i~~wd~~~~~~~~~~~~~-----~~v~~~~~s~dg~~l~~~~  279 (297)
                        .+---+....+.+.|..+|+++......     -.|+.++..+||+.++.+-
T Consensus       191 R~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         191 RTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence              1112244556777777777776554332     2388888888887766543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.15  E-value=0.11  Score=44.22  Aligned_cols=170  Identities=9%  Similarity=0.046  Sum_probs=91.0

Q ss_pred             ceEEE-EeeCC----CeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc--cCCeeEEEEc
Q psy3337          97 KNLRF-GFKTF----DSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH--SKEIDDVDFS  168 (297)
Q Consensus        97 ~~i~~-~~~~~----~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s  168 (297)
                      |.|.+ .+...    ..+..+. ....++|++++-- ++. |+.+. .+.|.+|++...+.+.....+  ...+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            78888 77763    2333332 3557888888766 444 44443 478999999766622222222  2245555554


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                        +++++.|.....+.++..+. ...+..+.... .. ..      +.++.+-+++..++.        +..+|.|.++.
T Consensus       139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~-~~-~~------v~~~~~l~d~~~~i~--------~D~~gnl~~l~  200 (321)
T PF03178_consen  139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDY-QP-RW------VTAAEFLVDEDTIIV--------GDKDGNLFVLR  200 (321)
T ss_dssp             --TTEEEEEESSSSEEEEEEETTTE-EEEEEEES-S--BE------EEEEEEE-SSSEEEE--------EETTSEEEEEE
T ss_pred             --ccEEEEEEcccCEEEEEEEccCCEEEEEEecC-CC-cc------EEEEEEecCCcEEEE--------EcCCCeEEEEE
Confidence              56999998888888775443 22233222111 00 11      122344444445655        34589999987


Q ss_pred             CCC-------Cc----eEEEeccCCCeEEE---EEcC--CCC------EEEEEecCCCeEEEE
Q psy3337         248 VDS-------GR----LRLAREMKESLSAL---AVRD--DGR------FVAVGTMFTGSVFVY  288 (297)
Q Consensus       248 ~~~-------~~----~~~~~~~~~~v~~~---~~s~--dg~------~l~~~~~~dg~i~vw  288 (297)
                      ...       ++    ....+..++.|+++   ++.|  .+.      .++.++. +|.|.+.
T Consensus       201 ~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~-~G~Ig~l  262 (321)
T PF03178_consen  201 YNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV-DGSIGVL  262 (321)
T ss_dssp             E-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET-TS-EEEE
T ss_pred             ECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec-CCEEEEE
Confidence            763       22    23344445558877   5555  222      4778888 9998744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.09  E-value=0.069  Score=44.14  Aligned_cols=151  Identities=16%  Similarity=0.203  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCCCcEEEEeCC-CCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-ccCCCCc
Q psy3337         128 NGDLMVTGGTDGHLRLWSFP-KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK-WNTPDNI  205 (297)
Q Consensus       128 ~g~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~-~~~~~~~  205 (297)
                      .++.|+.|..+| +++++.. ........  +...|..+...|+-+.|++-+ |+.++++++..-....... ...+...
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            568899998888 9999983 22332222  233499999999877777664 5999999987543332110 0000000


Q ss_pred             ---eEEEEeeeeeeee--eCCCCeEEEEeccCcccccCCCCeEEEEeCCC----C-ceEEEeccCCCeEEEEEcCCCCEE
Q psy3337         206 ---KYLFKRCRYGLVE--DSPKRSRLFTLANPLAQNKRGISYVQQWDVDS----G-RLRLAREMKESLSALAVRDDGRFV  275 (297)
Q Consensus       206 ---~~~~~~~~~~~~~--~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~----~-~~~~~~~~~~~v~~~~~s~dg~~l  275 (297)
                         ...........++  -...+...+.++.        ...|.+|....    . +....+...+.+.+++|.  +..|
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~--------kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i  151 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV--------KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKI  151 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEE--------CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEE
Confidence               0000000000111  1223333333332        45888887754    2 566777777779999998  5678


Q ss_pred             EEEecCCCeEEEEEeCCce
Q psy3337         276 AVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~  294 (297)
                      +.|..  ....+.|+.++.
T Consensus       152 ~v~~~--~~f~~idl~~~~  168 (275)
T PF00780_consen  152 CVGTS--KGFYLIDLNTGS  168 (275)
T ss_pred             EEEeC--CceEEEecCCCC
Confidence            88874  457778887654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.00  E-value=0.091  Score=46.33  Aligned_cols=122  Identities=12%  Similarity=0.152  Sum_probs=75.0

Q ss_pred             CeeEEEEccCCCEEEEE-eCCC----cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc-
Q psy3337         161 EIDDVDFSISGEQIVSI-AKDG----KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA-  234 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~-~~d~----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~-  234 (297)
                      .+..+.++|+++++|.+ +..|    .++++|+.+|+.+...           +..+.+..+.|.++++.|+....+.. 
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-----------i~~~~~~~~~W~~d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-----------IENPKFSSVSWSDDGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-----------EEEEESEEEEECTTSSEEEEEECSTTT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-----------ccccccceEEEeCCCCEEEEEEeCccc
Confidence            34467899999998855 3333    4999999999665321           11222334889999888777654110 


Q ss_pred             c--ccCCCCeEEEEeCCCCce--EEEecc--CCC-eEEEEEcCCCCEEEEEecC--C-CeEEEEEeCCc
Q psy3337         235 Q--NKRGISYVQQWDVDSGRL--RLAREM--KES-LSALAVRDDGRFVAVGTMF--T-GSVFVYIAFSL  293 (297)
Q Consensus       235 ~--~g~~d~~i~~wd~~~~~~--~~~~~~--~~~-v~~~~~s~dg~~l~~~~~~--d-g~i~vwd~~~~  293 (297)
                      .  .......|+.|.+.+...  ...+..  ... ...+..++|+++|+.....  + ..+++.|+..+
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            0  011256799999987532  233433  333 5688899999998754431  2 45788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.99  E-value=0.022  Score=52.32  Aligned_cols=111  Identities=16%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             CCeeEEEEccCCCEEEEEe------CCCc--EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         160 KEIDDVDFSISGEQIVSIA------KDGK--AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~------~d~~--v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      ..+.+++++|+|+.++...      .|..  |.+++. .+.. ..+...           .....-.|+|+|..|+++..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-----------~~~t~PsWspDG~~lw~v~d  416 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-----------HSLTRPSWSLDADAVWVVVD  416 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-----------CCCCCceECCCCCceEEEec
Confidence            4678999999999887655      2433  444453 2222 222110           01223568999888888754


Q ss_pred             C----cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEE
Q psy3337         232 P----LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFV  287 (297)
Q Consensus       232 ~----~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~v  287 (297)
                      .    ++......+.+.+.++..+....  .....|..+.|||||..|+...  +|.|.+
T Consensus       417 g~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~V  472 (591)
T PRK13616        417 GNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYL  472 (591)
T ss_pred             CcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence            1    11112234566666776655443  2234499999999999998876  567766

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.97  E-value=0.02  Score=39.72  Aligned_cols=65  Identities=12%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             EEEEEEec---CC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy3337         120 QRVVRLSR---NG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS  188 (297)
Q Consensus       120 v~~~~~s~---~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~  188 (297)
                      |+++++..   || +.|+.|+.|..|++|+-  .+.+..+.. .+.|+++.-... ..|+.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            55666654   44 68999999999999984  356667764 446777777665 57888999999999875

>KOG2395|consensus

Probab=96.94  E-value=0.058  Score=47.47  Aligned_cols=141  Identities=14%  Similarity=0.081  Sum_probs=87.7

Q ss_pred             CCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCC--EE-----EEEcCCCcEEEEeCCC-Ce-eeEEec
Q psy3337          86 PPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGD--LM-----VTGGTDGHLRLWSFPK-MK-PLLHIE  156 (297)
Q Consensus        86 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l-----~s~~~d~~i~iwd~~~-~~-~~~~~~  156 (297)
                      +.+|...+..++.-++|++.|+.+.... -|.. |.-+.+.|+.+  .|     +.|-.|+.|.-||++- +. .+...+
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            3444555666666666999999999987 4554 77888888753  22     3566788899999872 22 233333


Q ss_pred             ccc----CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         157 AHS----KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE-LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       157 ~~~----~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      +|.    ....|.+-..+| ++++|+.+|.|+|||- .+..-.+ +.+-.          ..+..|..+.+|+.|+... 
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG----------~~I~hVdvtadGKwil~Tc-  490 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLG----------DAIKHVDVTADGKWILATC-  490 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccC----------CceeeEEeeccCcEEEEec-
Confidence            332    234455554454 8999999999999996 4433222 21111          1122355678888877654 


Q ss_pred             CcccccCCCCeEEEEeCC
Q psy3337         232 PLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       232 ~~~~~g~~d~~i~~wd~~  249 (297)
                              +.+|.+.++.
T Consensus       491 --------~tyLlLi~t~  500 (644)
T KOG2395|consen  491 --------KTYLLLIDTL  500 (644)
T ss_pred             --------ccEEEEEEEe
Confidence                    4566666653

>KOG2079|consensus

Probab=96.90  E-value=0.01  Score=56.15  Aligned_cols=76  Identities=21%  Similarity=0.299  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCCcEEEEeCCCC-eeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCC
Q psy3337         128 NGDLMVTGGTDGHLRLWSFPKM-KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPD  203 (297)
Q Consensus       128 ~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~  203 (297)
                      .+-.++.|+..|.|-..|+... .+...=..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence            4557888999999998887642 221111223578999999999999999999999999999999998888776633

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.88  E-value=0.1  Score=46.72  Aligned_cols=153  Identities=11%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             CcEEEEEEecCCCEE-EEEc--CCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC----CCEEEEEeCCCcEEEEEcC-
Q psy3337         118 SLQRVVRLSRNGDLM-VTGG--TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS----GEQIVSIAKDGKAFVWNSK-  189 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l-~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~s~~~d~~v~lwd~~-  189 (297)
                      .+|..++|. ||+.+ .+.-  .+|.+++=|   .+.+..|    ..|..+.|.|-    -.-|++......|.+|.+. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            357789997 55443 3431  222222211   1223333    45899999984    3245556678889999874 


Q ss_pred             ----CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC--CCceEEEeccCCCe
Q psy3337         190 ----NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD--SGRLRLAREMKESL  263 (297)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~--~~~~~~~~~~~~~v  263 (297)
                          ..+.+..-..+-..  .+.+   --....|+|....|+....        ...=.+++++  +.+....+...+.|
T Consensus        92 s~~e~~K~l~sQtcEi~e--~~pv---LpQGCVWHPk~~iL~VLT~--------~dvSV~~sV~~d~srVkaDi~~~G~I  158 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIRE--PFPV---LPQGCVWHPKKAILTVLTA--------RDVSVLPSVHCDSSRVKADIKTSGLI  158 (671)
T ss_pred             CccccccceeeeeeeccC--Cccc---CCCcccccCCCceEEEEec--------CceeEeeeeeeCCceEEEeccCCceE
Confidence                12222211111100  0000   0012458999888777654        2222233433  34555566666669


Q ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         264 SALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       264 ~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .|.+|.+||+.|+++-...=.-++||-.
T Consensus       159 hCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  159 HCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            9999999999887765313356788743

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.87  E-value=0.34  Score=44.16  Aligned_cols=199  Identities=14%  Similarity=0.123  Sum_probs=112.5

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCCcEE---E-------EEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC-
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSESLQR---V-------VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE-  161 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~~v~---~-------~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-  161 (297)
                      +.++.|+- |..+|+.+-.+...-...+.   +       +++  .+..++.++.|+.+.-+|..+|+.+......... 
T Consensus        76 s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~  153 (527)
T TIGR03075        76 TSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA  153 (527)
T ss_pred             CCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecccccccc
Confidence            33445554 88999887666421111111   1       122  2346777888999999999999988766421110 


Q ss_pred             eeEEEEcc---CCCEEEEEe------CCCcEEEEEcCCCceeeeeeccCCCCc---------------------eEEE-E
Q psy3337         162 IDDVDFSI---SGEQIVSIA------KDGKAFVWNSKNGSLSKELKWNTPDNI---------------------KYLF-K  210 (297)
Q Consensus       162 v~~~~~sp---~~~~l~s~~------~d~~v~lwd~~~~~~~~~~~~~~~~~~---------------------~~~~-~  210 (297)
                      -..+.-+|   ++ .++.+.      .+|.|..+|.++|+.+-.+..-.+...                     .+.. .
T Consensus       154 ~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg  232 (527)
T TIGR03075       154 GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGG  232 (527)
T ss_pred             cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCC
Confidence            01111122   44 444443      268999999999988766543221100                     0000 0


Q ss_pred             eeeeeeeeeCCCCeEEEEecc-CcccccC---C----CCeEEEEeCCCCceEEEecc--CC--------CeEEEEEcCCC
Q psy3337         211 RCRYGLVEDSPKRSRLFTLAN-PLAQNKR---G----ISYVQQWDVDSGRLRLAREM--KE--------SLSALAVRDDG  272 (297)
Q Consensus       211 ~~~~~~~~~s~~~~~l~~~~~-~~~~~g~---~----d~~i~~wd~~~~~~~~~~~~--~~--------~v~~~~~s~dg  272 (297)
                      ......+++.|....++.... +--..++   .    ...|.-.|+++|+.+-.++.  |+        ...=+.+..+|
T Consensus       233 ~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G  312 (527)
T TIGR03075       233 GATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDG  312 (527)
T ss_pred             CCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCC
Confidence            011223566776666665442 1000111   1    23788889999998866654  21        11122233477


Q ss_pred             C---EEEEEecCCCeEEEEEeCCceec
Q psy3337         273 R---FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       273 ~---~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +   .|+.+.. +|.++++|-.+|++|
T Consensus       313 ~~~~~v~~~~K-~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       313 KPRKLLAHADR-NGFFYVLDRTNGKLL  338 (527)
T ss_pred             cEEEEEEEeCC-CceEEEEECCCCcee
Confidence            6   6778888 999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.78  E-value=0.22  Score=40.51  Aligned_cols=164  Identities=10%  Similarity=0.080  Sum_probs=100.8

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVS  176 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  176 (297)
                      .|+. ++.+|+..........-.--.++...| +...---.++...+||..+.+.+.++.- ...=+.++  .++..|+.
T Consensus        69 ~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~  144 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIM  144 (264)
T ss_dssp             EEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEE
T ss_pred             EEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEE
Confidence            4666 899998876655233333334555433 3333445788999999999988887753 34556777  46777887


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE
Q psy3337         177 IAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA  256 (297)
Q Consensus       177 ~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~  256 (297)
                      +.....++.+|..+.+....+......  ..   ...++.+.+- +|...+-+-.        ...|...|..+|+++..
T Consensus       145 SDGS~~L~~~dP~~f~~~~~i~V~~~g--~p---v~~LNELE~i-~G~IyANVW~--------td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  145 SDGSSRLYFLDPETFKEVRTIQVTDNG--RP---VSNLNELEYI-NGKIYANVWQ--------TDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             E-SSSEEEEE-TTT-SEEEEEE-EETT--EE------EEEEEEE-TTEEEEEETT--------SSEEEEEETTT-BEEEE
T ss_pred             ECCccceEEECCcccceEEEEEEEECC--EE---CCCcEeEEEE-cCEEEEEeCC--------CCeEEEEeCCCCeEEEE
Confidence            777889999999888777766543211  11   1124455564 6766666554        67899999999998876


Q ss_pred             ecc------------C---CC-eEEEEEcCCCCEEEEEe
Q psy3337         257 REM------------K---ES-LSALAVRDDGRFVAVGT  279 (297)
Q Consensus       257 ~~~------------~---~~-v~~~~~s~dg~~l~~~~  279 (297)
                      +..            .   .. .+.+++.|....|.+.+
T Consensus       211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            521            1   23 89999998766655554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.76  E-value=0.006  Score=35.35  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=29.8

Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      ...|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            346999999999999999999999999998 5544

>KOG4499|consensus

Probab=96.74  E-value=0.064  Score=42.36  Aligned_cols=130  Identities=13%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             CcEEEEEEecCCCEEEEEcCC---------CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEE-EeCCCcEEEEE
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTD---------GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVS-IAKDGKAFVWN  187 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~d~~v~lwd  187 (297)
                      .+.+.-..+|+|++++--..|         |.++.|-..  ..+..+...-.--+.++|+.+.+.+.. -+.+-+|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            344566778999985432222         233333211  111122222233467899887766654 45566777787


Q ss_pred             --cCCCce-----eeeeecc------CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE
Q psy3337         188 --SKNGSL-----SKELKWN------TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR  254 (297)
Q Consensus       188 --~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~  254 (297)
                        ..+|..     +..++-.      .|++            ++..-+|...+++-+        .++|...|+.+|+.+
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDG------------m~ID~eG~L~Va~~n--------g~~V~~~dp~tGK~L  246 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDG------------MTIDTEGNLYVATFN--------GGTVQKVDPTTGKIL  246 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCc------------ceEccCCcEEEEEec--------CcEEEEECCCCCcEE
Confidence              555543     2222221      1333            334556776666655        789999999999999


Q ss_pred             EEeccCCC-eEEEEEc
Q psy3337         255 LAREMKES-LSALAVR  269 (297)
Q Consensus       255 ~~~~~~~~-v~~~~~s  269 (297)
                      ..+..+.. |++++|-
T Consensus       247 ~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  247 LEIKLPTPQITSCCFG  262 (310)
T ss_pred             EEEEcCCCceEEEEec
Confidence            99888766 9999994

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.74  E-value=0.14  Score=41.96  Aligned_cols=166  Identities=8%  Similarity=0.036  Sum_probs=102.1

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc-cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH-SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      |-...|.++.|+|+.+.|++......-.++=..+|+.++++.-. -...-.+.+..++++.++--.+..+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            55556899999999999988887777777766778887766421 12345678888888888878899999887765433


Q ss_pred             eeeeecc-CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc-eE--EEeccC--------C
Q psy3337         194 SKELKWN-TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR-LR--LAREMK--------E  261 (297)
Q Consensus       194 ~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-~~--~~~~~~--------~  261 (297)
                      +..+... -+.+ ...-..+.|..++|.|....|+.+..        ..-+.||.+..+. .+  .....+        .
T Consensus       163 ~~~~~~~~i~L~-~~~k~N~GfEGlA~d~~~~~l~~aKE--------r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         163 VISAKVQKIPLG-TTNKKNKGFEGLAWDPVDHRLFVAKE--------RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL  233 (316)
T ss_pred             EEeccceEEecc-ccCCCCcCceeeecCCCCceEEEEEc--------cCCcEEEEEecCCcccccccccCcccccceEee
Confidence            2222110 0000 00011345667999999999988765        5555555544322 11  000000        2


Q ss_pred             CeEEEEEcCC-CCEEEEEecCCCeEEEEEe
Q psy3337         262 SLSALAVRDD-GRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       262 ~v~~~~~s~d-g~~l~~~~~~dg~i~vwd~  290 (297)
                      .|.++.|.+. +..|+-+.+ ++.+.-.|.
T Consensus       234 DvSgl~~~~~~~~LLVLS~E-Sr~l~Evd~  262 (316)
T COG3204         234 DVSGLEFNAITNSLLVLSDE-SRRLLEVDL  262 (316)
T ss_pred             ccccceecCCCCcEEEEecC-CceEEEEec
Confidence            2677888864 555666665 776666654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.71  E-value=0.18  Score=44.08  Aligned_cols=122  Identities=11%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-------------------------------------------eeEEe
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-------------------------------------------PLLHI  155 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-------------------------------------------~~~~~  155 (297)
                      .|+.+.|+++...|+.|...|.|.||.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47788888888788888888888887642110                                           11122


Q ss_pred             ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC---CCCceEEEEeeeeeeeeeCCCC---eEEEEe
Q psy3337         156 EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT---PDNIKYLFKRCRYGLVEDSPKR---SRLFTL  229 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~---~~l~~~  229 (297)
                      ....++|++++.| |=-+++.|..+|.+.|.|+|....+..-....   ............|..+....|+   ..+++ 
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v-  160 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV-  160 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE-
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE-
Confidence            3346789999987 44599999999999999998877776533221   1111222333445555565665   34444 


Q ss_pred             ccCcccccCCCCeEEEEeCC
Q psy3337         230 ANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~  249 (297)
                             |+..|.+.+|.+.
T Consensus       161 -------GTn~G~v~~fkIl  173 (395)
T PF08596_consen  161 -------GTNSGNVLTFKIL  173 (395)
T ss_dssp             -------EETTSEEEEEEEE
T ss_pred             -------EeCCCCEEEEEEe
Confidence                   6668999999775

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.67  E-value=0.29  Score=40.46  Aligned_cols=69  Identities=16%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCC------CC-eeeEEecc-----ccCCeeEEEEccCCC------------EEE
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFP------KM-KPLLHIEA-----HSKEIDDVDFSISGE------------QIV  175 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~sp~~~------------~l~  175 (297)
                      -+.++++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4689999999888888888899999986      12 22333332     123577777775332            367


Q ss_pred             EEeCCCcEEEEEc
Q psy3337         176 SIAKDGKAFVWNS  188 (297)
Q Consensus       176 s~~~d~~v~lwd~  188 (297)
                      .++.||+|.-|..
T Consensus       105 f~tEdGTisaW~p  117 (336)
T TIGR03118       105 FVTEDGTLSGWAP  117 (336)
T ss_pred             EEeCCceEEeecC
Confidence            7889999999985

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.67  E-value=0.63  Score=44.30  Aligned_cols=166  Identities=15%  Similarity=0.149  Sum_probs=99.5

Q ss_pred             CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCee-------------EEEEcc--CCCEEEEEeC----------CCcE
Q psy3337         129 GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID-------------DVDFSI--SGEQIVSIAK----------DGKA  183 (297)
Q Consensus       129 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~sp--~~~~l~s~~~----------d~~v  183 (297)
                      +..++.++.|+.+.-.|.++|+.+..+.. .+.|.             .+.-.|  .+..++.++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            35788888999999999999998876642 21110             111122  2335555542          6889


Q ss_pred             EEEEcCCCceeeeeeccCCCC-------ceEEEE-eeeeeeeeeCCCCeEEEEecc-C--cc-------cccCCCCeEEE
Q psy3337         184 FVWNSKNGSLSKELKWNTPDN-------IKYLFK-RCRYGLVEDSPKRSRLFTLAN-P--LA-------QNKRGISYVQQ  245 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~s~~~~~l~~~~~-~--~~-------~~g~~d~~i~~  245 (297)
                      +-+|+++|+.+-.+....|..       ..+... .......++.++...++.... +  ..       ......+.|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            999999999887775322221       111100 111233556666555554322 1  00       01123567888


Q ss_pred             EeCCCCceEEEecc-CCCe---------EEEEEcC-CCC---EEEEEecCCCeEEEEEeCCceec
Q psy3337         246 WDVDSGRLRLAREM-KESL---------SALAVRD-DGR---FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       246 wd~~~~~~~~~~~~-~~~v---------~~~~~s~-dg~---~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .|..+|+.+-.++. |..+         .=+.+.. +|+   .|+.++. +|.++++|..+|+.|
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K-~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK-QGQIYVLDRRTGEPI  482 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC-CCEEEEEECCCCCEE
Confidence            99999998876654 2111         1122322 564   7888888 999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2079|consensus

Probab=96.64  E-value=0.0076  Score=56.94  Aligned_cols=67  Identities=21%  Similarity=0.415  Sum_probs=55.2

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEE---EccCCCEEEEEeCCCc
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD---FSISGEQIVSIAKDGK  182 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~---~sp~~~~l~s~~~d~~  182 (297)
                      -.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+++++-   +..++..++++...|.
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            457899999999999999999999999999999998888877766655544   4446667888877776

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.52  E-value=0.23  Score=43.14  Aligned_cols=157  Identities=13%  Similarity=0.064  Sum_probs=81.6

Q ss_pred             cEEEEEEecCCCEEEEEc-----------CCC-cEEEEeCCC--Ce--eeEEeccccCCeeEEEEccCCCEEEEEeCCCc
Q psy3337         119 LQRVVRLSRNGDLMVTGG-----------TDG-HLRLWSFPK--MK--PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK  182 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~-----------~d~-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~  182 (297)
                      ....++|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++ +++ ++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            345889999998777643           223 677776432  33  223443334456889999988 444 444443


Q ss_pred             EEEEEcCC-C----ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC---ccc--------ccCCCCeEEEE
Q psy3337         183 AFVWNSKN-G----SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP---LAQ--------NKRGISYVQQW  246 (297)
Q Consensus       183 v~lwd~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~~--------~g~~d~~i~~w  246 (297)
                      .++.|... +    +....+..- +.. . .........+.+.|||.+.++.+..   ...        .....+.|..+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~-~~~-~-~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGF-GGQ-I-NNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEcc-CCC-C-CcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            33435431 1    111111110 000 0 0000112347789999766665421   000        00112567777


Q ss_pred             eCCCCceEEEeccCCCeEEEEEcCCCCEEEEEec
Q psy3337         247 DVDSGRLRLAREMKESLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  280 (297)
                      +..+++....-.+......++|+|+|.++++-..
T Consensus       170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             ecCCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence            7776554333333444789999999988776543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.47  E-value=0.24  Score=40.64  Aligned_cols=117  Identities=11%  Similarity=0.147  Sum_probs=78.3

Q ss_pred             eccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeecc---CCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWN---TPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      +.+-...+.++.|+|+.+.|++......-.||=-..|+.+.++...   .|+            .+++..+++++++-- 
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE------------~Ieyig~n~fvi~dE-  147 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE------------TIEYIGGNQFVIVDE-  147 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh------------HeEEecCCEEEEEeh-
Confidence            4455556999999999999888877777777766688888877532   222            255566666666533 


Q ss_pred             CcccccCCCCeEEEEeCCCCceEE-------Ee---cc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         232 PLAQNKRGISYVQQWDVDSGRLRL-------AR---EM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       232 ~~~~~g~~d~~i~~wd~~~~~~~~-------~~---~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                             .++.+.++.+.....+.       .+   .. +.....++|+|..+.|..+-+ -.-+.||.+..
T Consensus       148 -------R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~~  211 (316)
T COG3204         148 -------RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVTQ  211 (316)
T ss_pred             -------hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEec
Confidence                   36777777766532111       11   11 223789999999888888887 77777776653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.46  E-value=0.37  Score=39.19  Aligned_cols=165  Identities=14%  Similarity=0.104  Sum_probs=95.0

Q ss_pred             eEEEEecCCCCcEEEEEEecCCCEEEEEcCCC--cEEEEeCCCCeeeEEeccc-cCCeeEEEEccCCCEEEEEeCCCcEE
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG--HLRLWSFPKMKPLLHIEAH-SKEIDDVDFSISGEQIVSIAKDGKAF  184 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~d~~v~  184 (297)
                      .+.++..........+.|..+|.++-+.+.-|  .|+.+|+.+++......-. ...--.+....+ +.+...=.++...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f  113 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEE
Confidence            45555434455667888878888888877766  7899999999866544322 112233444322 2333334678899


Q ss_pred             EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC---C
Q psy3337         185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK---E  261 (297)
Q Consensus       185 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~---~  261 (297)
                      +||..+.+.+.++.... .  .+-        +  ..++..|+....        ...|+++|..+.+....+...   .
T Consensus       114 ~yd~~tl~~~~~~~y~~-E--GWG--------L--t~dg~~Li~SDG--------S~~L~~~dP~~f~~~~~i~V~~~g~  172 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPG-E--GWG--------L--TSDGKRLIMSDG--------SSRLYFLDPETFKEVRTIQVTDNGR  172 (264)
T ss_dssp             EEETTTTEEEEEEE-SS-S----E--------E--EECSSCEEEE-S--------SSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred             EEccccceEEEEEecCC-c--ceE--------E--EcCCCEEEEECC--------ccceEEECCcccceEEEEEEEECCE
Confidence            99999888888775432 1  111        2  245555655332        568999999887766665432   1


Q ss_pred             ---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         262 ---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       262 ---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                         .++-+-|- +|...|=.=. ...|...|..+|+.+
T Consensus       173 pv~~LNELE~i-~G~IyANVW~-td~I~~Idp~tG~V~  208 (264)
T PF05096_consen  173 PVSNLNELEYI-NGKIYANVWQ-TDRIVRIDPETGKVV  208 (264)
T ss_dssp             E---EEEEEEE-TTEEEEEETT-SSEEEEEETTT-BEE
T ss_pred             ECCCcEeEEEE-cCEEEEEeCC-CCeEEEEeCCCCeEE
Confidence               14555554 5555554444 667777777777653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.44  E-value=0.17  Score=44.91  Aligned_cols=102  Identities=9%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeecc
Q psy3337         121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWN  200 (297)
Q Consensus       121 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~  200 (297)
                      ....|.+.+ .+|+-...++|.|+.--+.+....++.. ..+..+-.   |.+|+..+.+ .|.+||+.+++.+..+...
T Consensus        72 ~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~  145 (443)
T PF04053_consen   72 LSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS  145 (443)
T ss_dssp             SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-
T ss_pred             eEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC
Confidence            367788844 5666666888988632222222233221 12333322   7777776655 8999999999988888643


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .            +..+.|++++.+++.++.         ..+.+++..
T Consensus       146 ~------------vk~V~Ws~~g~~val~t~---------~~i~il~~~  173 (443)
T PF04053_consen  146 A------------VKYVIWSDDGELVALVTK---------DSIYILKYN  173 (443)
T ss_dssp             E-------------EEEEE-TTSSEEEEE-S----------SEEEEEE-
T ss_pred             C------------CcEEEEECCCCEEEEEeC---------CeEEEEEec
Confidence            1            223668999988888653         456665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.30  E-value=0.21  Score=34.70  Aligned_cols=101  Identities=18%  Similarity=0.168  Sum_probs=57.7

Q ss_pred             eeEEEEcc---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         162 IDDVDFSI---SG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       162 v~~~~~sp---~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      |++|++..   +| +.|++|+.|..|++|+-  ...+.++....           .+..+.-...+++.+...       
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-----------~v~~L~~~~~~~F~Y~l~-------   61 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-----------KVTSLCSLGGGRFAYALA-------   61 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-----------ceEEEEEcCCCEEEEEec-------
Confidence            56666654   32 57999999999999974  35565554332           111233344454444433       


Q ss_pred             CCCCeEEEEeCCCCceEEEeccCCCeEEEEEcC---CCC-EEEEEecCCCeEEE
Q psy3337         238 RGISYVQQWDVDSGRLRLAREMKESLSALAVRD---DGR-FVAVGTMFTGSVFV  287 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~---dg~-~l~~~~~~dg~i~v  287 (297)
                        +|+|-+|+-..  .+-..+....+.++++..   ||. -|++|-. +|.|-+
T Consensus        62 --NGTVGvY~~~~--RlWRiKSK~~~~~~~~~D~~gdG~~eLI~Gws-nGkve~  110 (111)
T PF14783_consen   62 --NGTVGVYDRSQ--RLWRIKSKNQVTSMAFYDINGDGVPELIVGWS-NGKVEV  110 (111)
T ss_pred             --CCEEEEEeCcc--eeeeeccCCCeEEEEEEcCCCCCceEEEEEec-CCeEEe
Confidence              68888887632  122222223366665543   333 5777777 888753

>PRK10115 protease 2; Provisional

Probab=96.22  E-value=0.55  Score=44.34  Aligned_cols=114  Identities=6%  Similarity=0.008  Sum_probs=66.8

Q ss_pred             cEEEEEEecCCCEEEEEcC-----CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC------CcEEEEE
Q psy3337         119 LQRVVRLSRNGDLMVTGGT-----DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD------GKAFVWN  187 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------~~v~lwd  187 (297)
                      .+..+.|||||++|+.+..     ...|++.|+.+++.+...-...  -..++|.+|++.|+....+      ..|++++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            3667889999998885432     2358888998876432221111  1469999998877655432      3577778


Q ss_pred             cCCCc--eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         188 SKNGS--LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       188 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +.++.  ....+.  .++. .+.+      .+..+.++++++....     ...++.+.+++.
T Consensus       206 lgt~~~~d~lv~~--e~~~-~~~~------~~~~s~d~~~l~i~~~-----~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYE--EKDD-TFYV------SLHKTTSKHYVVIHLA-----SATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEe--eCCC-CEEE------EEEEcCCCCEEEEEEE-----CCccccEEEEEC
Confidence            87762  222222  1111 1111      1223557777664443     445678888884

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.13  E-value=0.67  Score=38.85  Aligned_cols=169  Identities=12%  Similarity=0.127  Sum_probs=84.1

Q ss_pred             eEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC--CeeeEEeccccCCeeEEEEccCCCEEE
Q psy3337          98 NLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK--MKPLLHIEAHSKEIDDVDFSISGEQIV  175 (297)
Q Consensus        98 ~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~  175 (297)
                      .|+.....|+.-+.+..+-.+.+..+.-++||++++++..-....-||.-.  ..+..  +.-...|..|.|.|++.+.+
T Consensus       125 ~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~  202 (302)
T PF14870_consen  125 AIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWM  202 (302)
T ss_dssp             -EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEE
T ss_pred             cEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEE
Confidence            333333445444444435567788889999999998886666666787532  22222  22456899999999988766


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeecc-CCC-CceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce
Q psy3337         176 SIAKDGKAFVWNSKNGSLSKELKWN-TPD-NIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       176 s~~~d~~v~lwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                      .+ ..|.|+.=+..  .....+..+ .|. ...+     .+-.+++.+++...++..         .+.| +...+.|+.
T Consensus       203 ~~-~Gg~~~~s~~~--~~~~~w~~~~~~~~~~~~-----~~ld~a~~~~~~~wa~gg---------~G~l-~~S~DgGkt  264 (302)
T PF14870_consen  203 LA-RGGQIQFSDDP--DDGETWSEPIIPIKTNGY-----GILDLAYRPPNEIWAVGG---------SGTL-LVSTDGGKT  264 (302)
T ss_dssp             EE-TTTEEEEEE-T--TEEEEE---B-TTSS--S------EEEEEESSSS-EEEEES---------TT-E-EEESSTTSS
T ss_pred             Ee-CCcEEEEccCC--CCccccccccCCcccCce-----eeEEEEecCCCCEEEEeC---------CccE-EEeCCCCcc
Confidence            55 88888876621  111111111 011 0011     122477888877666543         2333 344455665


Q ss_pred             EEEecc----CCCeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         254 RLAREM----KESLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       254 ~~~~~~----~~~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                      -.....    +..++.+.|.++.+-++.|.  +|.|.-|
T Consensus       265 W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~--~G~ll~~  301 (302)
T PF14870_consen  265 WQKDRVGENVPSNLYRIVFVNPDKGFVLGQ--DGVLLRY  301 (302)
T ss_dssp             -EE-GGGTTSSS---EEEEEETTEEEEE-S--TTEEEEE
T ss_pred             ceECccccCCCCceEEEEEcCCCceEEECC--CcEEEEe
Confidence            555433    23388999987777777776  7887655

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.02  E-value=0.18  Score=44.44  Aligned_cols=140  Identities=11%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC-------EEEEEeCCCcEEEEEcC-CCceeeeeeccCCCC
Q psy3337         133 VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE-------QIVSIAKDGKAFVWNSK-NGSLSKELKWNTPDN  204 (297)
Q Consensus       133 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~s~~~d~~v~lwd~~-~~~~~~~~~~~~~~~  204 (297)
                      ..|+....++-.|++.|+.+..+.-|...  -+.|.|+..       .-+.|-.+..|.-.|.+ .|..+.......   
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd---  558 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD---  558 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh---
Confidence            35566667888888999999998877764  577777432       22344455556556665 333333222111   


Q ss_pred             ceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCC
Q psy3337         205 IKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTG  283 (297)
Q Consensus       205 ~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg  283 (297)
                        + .+...|.+..-.. .-+++.        ++..|.|++||--.-+....+++-+. |..+..+.+|.+|++.+  ..
T Consensus       559 --Y-~tKn~Fss~~tTe-sGyIa~--------as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~  624 (776)
T COG5167         559 --Y-KTKNKFSSGMTTE-SGYIAA--------ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KN  624 (776)
T ss_pred             --c-ccccccccccccc-CceEEE--------ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cc
Confidence              0 0111111121222 334555        55699999999776555556666554 99999999999998888  46


Q ss_pred             eEEEEEeC
Q psy3337         284 SVFVYIAF  291 (297)
Q Consensus       284 ~i~vwd~~  291 (297)
                      .+.+-|++
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            78887764

>KOG2444|consensus

Probab=95.82  E-value=0.021  Score=44.74  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             CCCCCCCceEEE-Eee-CCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc-CCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFK-TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS-KEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~  166 (297)
                      ...|+.++.|.+ ... -|.....+..+.+...+.+.-..++.+.+++..|+.|+.|++.-.+.+...-.|+ .++..+.
T Consensus        73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i  152 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI  152 (238)
T ss_pred             EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE
Confidence            346778888888 322 1221111111222222233333456788999999999999998888777666677 5566666


Q ss_pred             EccCCCEEEEE--eCCCcEEEEEcC
Q psy3337         167 FSISGEQIVSI--AKDGKAFVWNSK  189 (297)
Q Consensus       167 ~sp~~~~l~s~--~~d~~v~lwd~~  189 (297)
                      .+..+++++++  +.|..++.|++.
T Consensus       153 vv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  153 VVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             EecCCceEEeeccccchhhhhcchh
Confidence            66666677766  677777777765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.80  E-value=1.2  Score=38.97  Aligned_cols=176  Identities=10%  Similarity=0.099  Sum_probs=81.9

Q ss_pred             CCeEEEEecCCC-CcEEEEEEec-----------CCCEEEEEc-CCCcEEEEeCCC----CeeeEEecc---cc----CC
Q psy3337         106 FDSVQTVFAGSE-SLQRVVRLSR-----------NGDLMVTGG-TDGHLRLWSFPK----MKPLLHIEA---HS----KE  161 (297)
Q Consensus       106 ~~~~~~~~~~h~-~~v~~~~~s~-----------~g~~l~s~~-~d~~i~iwd~~~----~~~~~~~~~---~~----~~  161 (297)
                      ++.+..+...+. +.....-|+.           +.++|+..+ ..+.|+|+|+.+    .+..+.+..   +.    ..
T Consensus        52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~  131 (461)
T PF05694_consen   52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR  131 (461)
T ss_dssp             TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred             ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence            466776653443 4566667762           346676665 678999999863    344444442   11    12


Q ss_pred             eeEEEEccCCCEEEEEeC--C----CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC---
Q psy3337         162 IDDVDFSISGEQIVSIAK--D----GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP---  232 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~--d----~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---  232 (297)
                      ...+..-|+|+.++++-.  +    |-+.++|-.+.+........... ..+.+      .+.+.|..+.+++....   
T Consensus       132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~-~~~gY------Dfw~qpr~nvMiSSeWg~P~  204 (461)
T PF05694_consen  132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGP-QPFGY------DFWYQPRHNVMISSEWGAPS  204 (461)
T ss_dssp             EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT-------------EEEETTTTEEEE-B---HH
T ss_pred             CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCC-CCCCC------CeEEcCCCCEEEEeccCChh
Confidence            334445578988887632  2    45778887766665554432110 01111      25577877777776542   


Q ss_pred             ---------cccccCCCCeEEEEeCCCCceEEEeccCCC---eEEEEEcC--CCCEEEEEecCCCeEEEE
Q psy3337         233 ---------LAQNKRGISYVQQWDVDSGRLRLAREMKES---LSALAVRD--DGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       233 ---------~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~--dg~~l~~~~~~dg~i~vw  288 (297)
                               .+..+....+|.+||+.+.+.++.+...+.   +..+.|..  +..+=++|+.-.+.|..|
T Consensus       205 ~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~  274 (461)
T PF05694_consen  205 MFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF  274 (461)
T ss_dssp             HHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred             hcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence                     233445567999999999999999887643   66777754  444433333215555554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444|consensus

Probab=95.76  E-value=0.039  Score=43.28  Aligned_cols=73  Identities=14%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCCcEEEEeCCC-CeeeEEeccccCCee-EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC
Q psy3337         129 GDLMVTGGTDGHLRLWSFPK-MKPLLHIEAHSKEID-DVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT  201 (297)
Q Consensus       129 g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~  201 (297)
                      +..++.|+.+|.|++|...- +.....+..-...|. .+.--.++.+..+++.|+.|+.|++.-++.+.....|.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            45789999999999998762 111111111111222 22222355688899999999999998776665554443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.38  E-value=0.95  Score=41.78  Aligned_cols=110  Identities=10%  Similarity=0.122  Sum_probs=68.0

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-cccCCeeEEEEc--cCCCEEEEEeCCCcEEEEEcCC--------
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFS--ISGEQIVSIAKDGKAFVWNSKN--------  190 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~s~~~d~~v~lwd~~~--------  190 (297)
                      -+.-|.-++..+.-+....+.|||.+.+.....-. ...+.|.++.|.  |+++.+++.+....|.+|--..        
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            34444445544444455679999998776433221 346789999994  6899999999999999985321        


Q ss_pred             -CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         191 -GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                       ...+..+...       ..++..++...|.++|..++.++          +.+.|+|-
T Consensus       114 ~w~~i~~i~i~-------~~T~h~Igds~Wl~~G~LvV~sG----------Nqlfv~dk  155 (631)
T PF12234_consen  114 SWAPIRKIDIS-------SHTPHPIGDSIWLKDGTLVVGSG----------NQLFVFDK  155 (631)
T ss_pred             ccceeEEEEee-------cCCCCCccceeEecCCeEEEEeC----------CEEEEECC
Confidence             1122222111       11223355677899998777654          46666664

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.30  E-value=0.39  Score=42.03  Aligned_cols=89  Identities=12%  Similarity=0.062  Sum_probs=62.3

Q ss_pred             EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE--ccCC----------------
Q psy3337         110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF--SISG----------------  171 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~----------------  171 (297)
                      ..+. .....+.++..+|++++.|+...=|.|.++|+.++..++.+++..+.=...-.  .+..                
T Consensus       301 ~~l~-D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  301 FGLP-DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             Eeec-cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            3444 55566889999999999999888899999999999888888775543111110  0110                


Q ss_pred             C-EEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         172 E-QIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       172 ~-~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      . +++-+-.-|.|-||.++.|..+..+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            1 233456778999999999988877653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.28  E-value=0.14  Score=40.84  Aligned_cols=63  Identities=13%  Similarity=0.280  Sum_probs=46.8

Q ss_pred             eCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe-------c--------cCCCeEEEEEcCCCCEEEEEecCCC
Q psy3337         219 DSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR-------E--------MKESLSALAVRDDGRFVAVGTMFTG  283 (297)
Q Consensus       219 ~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~-------~--------~~~~v~~~~~s~dg~~l~~~~~~dg  283 (297)
                      +..++.+++++..        +|.+++||+.+++.+..-       .        ....|..+.++.+|.-|++-+  +|
T Consensus        18 l~~~~~~Ll~iT~--------~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls--ng   87 (219)
T PF07569_consen   18 LECNGSYLLAITS--------SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS--NG   87 (219)
T ss_pred             EEeCCCEEEEEeC--------CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe--CC
Confidence            3456777888776        999999999987654322       1        223399999999999888776  67


Q ss_pred             eEEEEEeC
Q psy3337         284 SVFVYIAF  291 (297)
Q Consensus       284 ~i~vwd~~  291 (297)
                      ..+.|+..
T Consensus        88 ~~y~y~~~   95 (219)
T PF07569_consen   88 DSYSYSPD   95 (219)
T ss_pred             CEEEeccc
Confidence            88888753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.26  E-value=0.086  Score=29.66  Aligned_cols=31  Identities=10%  Similarity=0.246  Sum_probs=25.8

Q ss_pred             CCeeEEEEccCC---CEEEEEeCCCcEEEEEcCC
Q psy3337         160 KEIDDVDFSISG---EQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       160 ~~v~~~~~sp~~---~~l~s~~~d~~v~lwd~~~  190 (297)
                      +.|.+++|+|+.   .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.01  E-value=0.11  Score=29.21  Aligned_cols=30  Identities=13%  Similarity=0.122  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCC---EEEEEecCCCeEEEEEeCC
Q psy3337         262 SLSALAVRDDGR---FVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       262 ~v~~~~~s~dg~---~l~~~~~~dg~i~vwd~~~  292 (297)
                      .++++.|||+..   +|+.+-. -|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~-~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEH-QGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEcc-CCeEEEEEccc
Confidence            488999998544   7777777 89999999994

It contains a characteristic DLL sequence motif.

>PHA02713 hypothetical protein; Provisional

Probab=94.97  E-value=1.2  Score=41.14  Aligned_cols=51  Identities=8%  Similarity=0.122  Sum_probs=30.8

Q ss_pred             eEEEEeCCC---CceEEEeccCCCeEEEEEcCCCCEEEEEecCCC--eEEEEEeCCce
Q psy3337         242 YVQQWDVDS---GRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--SVFVYIAFSLQ  294 (297)
Q Consensus       242 ~i~~wd~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg--~i~vwd~~~~~  294 (297)
                      .+..||..+   ...+..+.......+++. -+|+..++|+. +|  .+..||+.+.+
T Consensus       481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~-~~~~~~e~yd~~~~~  536 (557)
T PHA02713        481 CIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCY-ESYMLQDTFNVYTYE  536 (557)
T ss_pred             eEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeee-cceeehhhcCccccc
Confidence            467899886   333444433322222222 27888889988 88  77788876643

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=94.95  E-value=0.27  Score=32.91  Aligned_cols=64  Identities=14%  Similarity=0.115  Sum_probs=40.1

Q ss_pred             eeeCCC-CeEEEEeccC---------cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEec
Q psy3337         217 VEDSPK-RSRLFTLANP---------LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       217 ~~~s~~-~~~l~~~~~~---------~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  280 (297)
                      +.+.++ |...++-++.         .+..+...|.+..||+.+++....+.+-.-.+.+++++|+.+|+.+-.
T Consensus         3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen    3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            445666 4444444332         355577889999999999887666665445899999999998877653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.78  E-value=1.1  Score=42.77  Aligned_cols=117  Identities=14%  Similarity=0.148  Sum_probs=67.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC--------------CCeEEEEeccCcccc
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP--------------KRSRLFTLANPLAQN  236 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--------------~~~~l~~~~~~~~~~  236 (297)
                      +..++.++.++.|.-.|..+|+.+-.+....+.........|+-....-.|              .+..|+.        
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~--------  265 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL--------  265 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE--------
Confidence            456777788899999999999988877654432110110111110010011              1224444        


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCCe-------------EEEEEcC--CCCEEEEEe----------cCCCeEEEEEeC
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKESL-------------SALAVRD--DGRFVAVGT----------MFTGSVFVYIAF  291 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~v-------------~~~~~s~--dg~~l~~~~----------~~dg~i~vwd~~  291 (297)
                      ++.|+.|.-.|..+|+.+..+..+..|             ..+.-.|  .+..+++|+          . +|.|+-+|+.
T Consensus       266 ~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~-~G~I~A~Da~  344 (764)
T TIGR03074       266 PTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEP-SGVIRAFDVN  344 (764)
T ss_pred             ecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCC-CcEEEEEECC
Confidence            556999999999999988766433221             1111222  233455553          2 5889999999


Q ss_pred             Cceec
Q psy3337         292 SLQMC  296 (297)
Q Consensus       292 ~~~~~  296 (297)
                      +|+.+
T Consensus       345 TGkl~  349 (764)
T TIGR03074       345 TGALV  349 (764)
T ss_pred             CCcEe
Confidence            99864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.69  E-value=2  Score=39.76  Aligned_cols=108  Identities=14%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec--cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW--NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      ..-+.-+.-++..++-+....+.|||.+.+.....-..  +.+.. .+.        ....|+++.+++++.        
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~-dLD--------Wtst~d~qsiLaVGf--------   94 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIR-DLD--------WTSTPDGQSILAVGF--------   94 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCcee-ece--------eeecCCCCEEEEEEc--------
Confidence            33444444444444444556799999988764443332  11110 111        224789999999988        


Q ss_pred             CCeEEEEeCC---------CCceEEEe--ccCC--CeEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         240 ISYVQQWDVD---------SGRLRLAR--EMKE--SLSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       240 d~~i~~wd~~---------~~~~~~~~--~~~~--~v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      .+.|.+|.-.         +...+..+  ..+.  +|.+..|.++|..++.++   +.+.|+|
T Consensus        95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~d  154 (631)
T PF12234_consen   95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFD  154 (631)
T ss_pred             CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEEC
Confidence            6777777432         12233333  2222  388999999987776554   4788876

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.52  E-value=0.8  Score=40.16  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             eccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeee-------eeeCCCCeEEE
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGL-------VEDSPKRSRLF  227 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~l~  227 (297)
                      |......+.++..+|++++.++...=|.|.|+|+.++..++..++.......++........       ....+....++
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            33444568899999999988888777999999999998888877665332111111000000       00001111222


Q ss_pred             EeccCcccccCCCCeEEEEeCCCCceEEEecc
Q psy3337         228 TLANPLAQNKRGISYVQQWDVDSGRLRLAREM  259 (297)
Q Consensus       228 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  259 (297)
                      .+.      ...-|.|.||.++.|..+..+..
T Consensus       383 vIy------aprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIY------APRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEE------eccCCeEEEEecCCCCEEEEEEe
Confidence            222      34578999999998877666543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.49  E-value=2.7  Score=35.88  Aligned_cols=49  Identities=12%  Similarity=0.241  Sum_probs=33.5

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCee---eEEe----ccccCCeeEEEEccC
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP---LLHI----EAHSKEIDDVDFSIS  170 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~sp~  170 (297)
                      -+.++|.|||++|++- ..|.|++++ ..+..   +..+    .........++++|+
T Consensus         4 P~~~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            4689999999877764 599999999 44433   2222    223456889999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499|consensus

Probab=94.46  E-value=2  Score=34.24  Aligned_cols=84  Identities=14%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             EEEEEEecCCCEEE-EEcCCCcEEEEe--CCCCe-----eeEEecc----ccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         120 QRVVRLSRNGDLMV-TGGTDGHLRLWS--FPKMK-----PLLHIEA----HSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       120 v~~~~~s~~g~~l~-s~~~d~~i~iwd--~~~~~-----~~~~~~~----~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      -+.++|+.+.+.+. .-+.+-+|.-||  ..+|.     .+..++.    .....-.++...+|.++++.-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35788988776554 556677887787  44543     2333332    112234566677888888888889999999


Q ss_pred             cCCCceeeeeeccCCC
Q psy3337         188 SKNGSLSKELKWNTPD  203 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~  203 (297)
                      +.+|+.+.++..+.+.
T Consensus       240 p~tGK~L~eiklPt~q  255 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQ  255 (310)
T ss_pred             CCCCcEEEEEEcCCCc
Confidence            9999999999887644

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.40  E-value=2.8  Score=35.69  Aligned_cols=159  Identities=11%  Similarity=0.126  Sum_probs=88.5

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCc------EEEEeCCC--C--eee-----EEeccccC--------CeeEEEEccCCCEE
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGH------LRLWSFPK--M--KPL-----LHIEAHSK--------EIDDVDFSISGEQI  174 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~------i~iwd~~~--~--~~~-----~~~~~~~~--------~v~~~~~sp~~~~l  174 (297)
                      +.+..+.+.|++..+++.+.++.      +..+++..  +  ..+     ..+....+        ..-+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            34567888865556666667776      55555432  1  111     11211111        34478887788888


Q ss_pred             EEEeCC------CcEEEEEcCCCceeeeeeccCCC---C--ceEEEEeeeeeeeeeCCCCeEEEEeccC-cccccCCC--
Q psy3337         175 VSIAKD------GKAFVWNSKNGSLSKELKWNTPD---N--IKYLFKRCRYGLVEDSPKRSRLFTLANP-LAQNKRGI--  240 (297)
Q Consensus       175 ~s~~~d------~~v~lwd~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~~~~g~~d--  240 (297)
                      ++.-.+      ..|..++.. |..+..+..+...   .  ....-....+-.++++|+|+.|+++... +.-.+...  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            887777      788888875 7776666332200   0  0111122345679999999977776552 11111111  


Q ss_pred             -----CeEEEEeCCC-Cce----EEEecc------CCCeEEEEEcCCCCEEEE
Q psy3337         241 -----SYVQQWDVDS-GRL----RLAREM------KESLSALAVRDDGRFVAV  277 (297)
Q Consensus       241 -----~~i~~wd~~~-~~~----~~~~~~------~~~v~~~~~s~dg~~l~~  277 (297)
                           -.|..||..+ ++.    ...+..      ...|..+.+-+++++|+.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                 2455556554 322    222331      223899999999997764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.38  E-value=0.22  Score=42.80  Aligned_cols=98  Identities=11%  Similarity=-0.028  Sum_probs=52.7

Q ss_pred             EcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEE
Q psy3337         187 NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSA  265 (297)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~  265 (297)
                      |..+|..+..+..+..     .....-|..-+|.++|+.|+..+.     ......+++.|+.+++..+.-.+... ...
T Consensus        16 D~~TG~~VtrLT~~~~-----~~h~~YF~~~~ft~dG~kllF~s~-----~dg~~nly~lDL~t~~i~QLTdg~g~~~~g   85 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDG-----HSHRLYFYQNCFTDDGRKLLFASD-----FDGNRNLYLLDLATGEITQLTDGPGDNTFG   85 (386)
T ss_dssp             -TTT--EEEE-S-TTS------EE---TTS--B-TTS-EEEEEE------TTSS-EEEEEETTT-EEEE---SS-B-TTT
T ss_pred             CCCCCceEEEecCCCC-----cccceeecCCCcCCCCCEEEEEec-----cCCCcceEEEEcccCEEEECccCCCCCccc
Confidence            6677777777654421     112223445668999988887665     44567899999999888777665433 446


Q ss_pred             EEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         266 LAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       266 ~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ..++|+.+.|+-... ...|+-.|+.+++.
T Consensus        86 ~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   86 GFLSPDDRALYYVKN-GRSLRRVDLDTLEE  114 (386)
T ss_dssp             -EE-TTSSEEEEEET-TTEEEEEETTT--E
T ss_pred             eEEecCCCeEEEEEC-CCeEEEEECCcCcE
Confidence            777898888876655 67888889888763

>KOG1520|consensus

Probab=94.32  E-value=2.2  Score=36.48  Aligned_cols=144  Identities=17%  Similarity=0.168  Sum_probs=75.3

Q ss_pred             CEEEEEcCCCcEEEEeCCCC----eeeE--Ee--ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeeecc
Q psy3337         130 DLMVTGGTDGHLRLWSFPKM----KPLL--HI--EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK-NGSLSKELKWN  200 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~----~~~~--~~--~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~-~~~~~~~~~~~  200 (297)
                      ..+.+|..+|.|..-+....    .+-.  .+  ..--+.-..++|...+.-|+.+.  ...-+|.+. .+.....+. .
T Consensus        77 il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaD--AYlGL~~V~p~g~~a~~l~-~  153 (376)
T KOG1520|consen   77 ILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVAD--AYLGLLKVGPEGGLAELLA-D  153 (376)
T ss_pred             eEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEe--cceeeEEECCCCCcceecc-c
Confidence            34556666777766665211    1110  01  11125567899998876666653  444455443 222222221 1


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEeccC---------cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCC
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP---------LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDD  271 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---------~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~d  271 (297)
                      ..++..+.+.    +.+..+++|...++-++.         .+..|..+|.+.-||..+......+..-.-.+.+++|||
T Consensus       154 ~~~G~~~kf~----N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d  229 (376)
T KOG1520|consen  154 EAEGKPFKFL----NDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPD  229 (376)
T ss_pred             cccCeeeeec----CceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCC
Confidence            1222222221    234455555444443332         234477788899999887554333333333688999999


Q ss_pred             CCEEEEEec
Q psy3337         272 GRFVAVGTM  280 (297)
Q Consensus       272 g~~l~~~~~  280 (297)
                      +.+++.+-.
T Consensus       230 ~sfvl~~Et  238 (376)
T KOG1520|consen  230 GSFVLVAET  238 (376)
T ss_pred             CCEEEEEee
Confidence            999887753

>KOG1916|consensus

Probab=94.22  E-value=0.078  Score=49.69  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=49.1

Q ss_pred             cEEEEEEec---CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEE-----------EccCCCEEEEEeCCCcEE
Q psy3337         119 LQRVVRLSR---NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD-----------FSISGEQIVSIAKDGKAF  184 (297)
Q Consensus       119 ~v~~~~~s~---~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~-----------~sp~~~~l~s~~~d~~v~  184 (297)
                      .+.-+.|.|   +.-++..+-.++.|++....+... ..+.+|...+..++           .||||+.|++++.||.++
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            345556655   556777888888998877654322 34455776655543           589999999999999988


Q ss_pred             EEEcC
Q psy3337         185 VWNSK  189 (297)
Q Consensus       185 lwd~~  189 (297)
                      .|.+.
T Consensus       261 f~Qiy  265 (1283)
T KOG1916|consen  261 FYQIY  265 (1283)
T ss_pred             eeeee
Confidence            88764

>KOG4441|consensus

Probab=94.06  E-value=4.9  Score=37.17  Aligned_cols=62  Identities=18%  Similarity=0.350  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCCc-----EEEEeCCCCe--eeEEeccccCCeeEEEEc-cCCCEEEEEeCCC------cEEEEEcCCCc
Q psy3337         128 NGDLMVTGGTDGH-----LRLWSFPKMK--PLLHIEAHSKEIDDVDFS-ISGEQIVSIAKDG------KAFVWNSKNGS  192 (297)
Q Consensus       128 ~g~~l~s~~~d~~-----i~iwd~~~~~--~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~d~------~v~lwd~~~~~  192 (297)
                      +|...+.||.||.     |-.||..+.+  .+..+..   ........ -++.+.++|+.++      ++..||..+..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            6788899998864     6677766543  2222221   22222222 2677777887554      46678877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.96  E-value=0.65  Score=37.04  Aligned_cols=67  Identities=24%  Similarity=0.500  Sum_probs=49.8

Q ss_pred             EEecCCCEEEEEcCCCcEEEEeCCCCeeeEE-------ec-------cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy3337         124 RLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH-------IE-------AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       124 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~-------~~-------~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~  189 (297)
                      .+..++++|++-..+|.+++||+.+++.+..       +.       .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3556788999999999999999988775432       11       2446788888888888777655 4778999875


Q ss_pred             CC
Q psy3337         190 NG  191 (297)
Q Consensus       190 ~~  191 (297)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            43

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.90  E-value=1.9  Score=40.87  Aligned_cols=30  Identities=10%  Similarity=-0.012  Sum_probs=25.6

Q ss_pred             eEEEEEcCC---CCEEEEEecCCCeEEEEEeCCc
Q psy3337         263 LSALAVRDD---GRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       263 v~~~~~s~d---g~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      |..+.|+|.   +..|++=+. |+++++||+...
T Consensus       149 i~qv~WhP~s~~~~~l~vLts-dn~lR~y~~~~~  181 (717)
T PF10168_consen  149 IKQVRWHPWSESDSHLVVLTS-DNTLRLYDISDP  181 (717)
T ss_pred             EEEEEEcCCCCCCCeEEEEec-CCEEEEEecCCC
Confidence            899999995   578888888 999999998653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.85  E-value=3.2  Score=34.20  Aligned_cols=146  Identities=11%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             CEEEEEcCCCcEEEEeCCCC-----eeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCC
Q psy3337         130 DLMVTGGTDGHLRLWSFPKM-----KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDN  204 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~  204 (297)
                      ..|+.+ ....|.+|.....     +....+. -...+.+++|.  ++.++.+..+ ...+.|+.++.....+.......
T Consensus       106 ~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~  180 (275)
T PF00780_consen  106 RRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSS  180 (275)
T ss_pred             eEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcc
Confidence            344444 4558888877542     3445554 34678899998  5577777655 47889998765543332111100


Q ss_pred             ceE---EEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEE--EeccCCCeEEEEEcCCCCEEEEEe
Q psy3337         205 IKY---LFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRL--AREMKESLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       205 ~~~---~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~dg~~l~~~~  279 (297)
                       .+   .-.......+.. +++.+|++.          +..-...|.. |+..+  .+.....+.++++.  ..+|+..+
T Consensus       181 -~~~~~~~~~~~~~~~~~-~~~e~Ll~~----------~~~g~fv~~~-G~~~r~~~i~W~~~p~~~~~~--~pyli~~~  245 (275)
T PF00780_consen  181 -SFKSRNSSSKPLGIFQL-SDNEFLLCY----------DNIGVFVNKN-GEPSRKSTIQWSSAPQSVAYS--SPYLIAFS  245 (275)
T ss_pred             -hhhhcccCCCceEEEEe-CCceEEEEe----------cceEEEEcCC-CCcCcccEEEcCCchhEEEEE--CCEEEEEC
Confidence             00   000000111222 334555442          2333333443 43332  34444456677763  35877777


Q ss_pred             cCCCeEEEEEeCCceecC
Q psy3337         280 MFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       280 ~~dg~i~vwd~~~~~~~~  297 (297)
                        ++.|.||++.+++.++
T Consensus       246 --~~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  246 --SNSIEVRSLETGELVQ  261 (275)
T ss_pred             --CCEEEEEECcCCcEEE
Confidence              4569999999998764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4460|consensus

Probab=93.79  E-value=2.7  Score=37.59  Aligned_cols=31  Identities=13%  Similarity=0.056  Sum_probs=24.0

Q ss_pred             eEEEEEcCCC---CEEEEEecCCCeEEEEEeCCce
Q psy3337         263 LSALAVRDDG---RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       263 v~~~~~s~dg---~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +..++|+|+.   ..|+.-+. |..|++||+.+..
T Consensus       168 l~Qa~WHP~S~~D~hL~iL~s-dnviRiy~lS~~t  201 (741)
T KOG4460|consen  168 LKQAAWHPSSILDPHLVLLTS-DNVIRIYSLSEPT  201 (741)
T ss_pred             eeeccccCCccCCceEEEEec-CcEEEEEecCCcc
Confidence            7888999964   55666666 9999999986543

>PRK13684 Ycf48-like protein; Provisional

Probab=93.76  E-value=3.9  Score=34.97  Aligned_cols=164  Identities=12%  Similarity=0.141  Sum_probs=86.2

Q ss_pred             CCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEE-EeCCCCeeeEEe-ccccCCeeEEEEccCCCEEEEEeCCCc
Q psy3337         105 TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRL-WSFPKMKPLLHI-EAHSKEIDDVDFSISGEQIVSIAKDGK  182 (297)
Q Consensus       105 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~i-wd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~d~~  182 (297)
                      .|+.-..+..+-...+..+.+.|++.+++++ ..|.+.. +| ..++.-..+ ..-...++++.+.|+++.++.+ ..|.
T Consensus       160 gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~  236 (334)
T PRK13684        160 GGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ  236 (334)
T ss_pred             CCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE
Confidence            3444333332335568899999998766665 4555542 22 122211111 2234578899999998877665 4566


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec---c
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE---M  259 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~---~  259 (297)
                      +.+=....|..-.....+.... .     ..+..+.+.|++..+++ ..        +|.+. .....|+.-....   .
T Consensus       237 ~~~~s~d~G~sW~~~~~~~~~~-~-----~~l~~v~~~~~~~~~~~-G~--------~G~v~-~S~d~G~tW~~~~~~~~  300 (334)
T PRK13684        237 IRFNDPDDLESWSKPIIPEITN-G-----YGYLDLAYRTPGEIWAG-GG--------NGTLL-VSKDGGKTWEKDPVGEE  300 (334)
T ss_pred             EEEccCCCCCccccccCCcccc-c-----cceeeEEEcCCCCEEEE-cC--------CCeEE-EeCCCCCCCeECCcCCC
Confidence            5432233443322222111000 1     11234667777765544 22        45444 3344444433332   1


Q ss_pred             -CCCeEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         260 -KESLSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       260 -~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                       ....+.+.|..+++.+++|.  .|.|..|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~G~--~G~il~~~  329 (334)
T PRK13684        301 VPSNFYKIVFLDPEKGFVLGQ--RGVLLRYV  329 (334)
T ss_pred             CCcceEEEEEeCCCceEEECC--CceEEEec
Confidence             12377888887777777766  68887765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.73  E-value=3.2  Score=33.90  Aligned_cols=107  Identities=19%  Similarity=0.136  Sum_probs=59.0

Q ss_pred             CeeEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeee-eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         161 EIDDVDFSISGEQIVSIA---KDGKAFVWNSKNGSLSKEL-KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~---~d~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      .+.+.+++++++.++...   ....++++..  +.....+ ...            .+....|++++...+....     
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~------------~l~~PS~d~~g~~W~v~~~-----   85 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG------------SLTRPSWDPDGWVWTVDDG-----   85 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC------------ccccccccCCCCEEEEEcC-----
Confidence            688999999999877665   2234444443  3222222 111            1223457888665555332     


Q ss_pred             cCCCCeEEEE-eCCCCceE-EEec--cCC-CeEEEEEcCCCCEEEEEecC--CCeEEEEE
Q psy3337         237 KRGISYVQQW-DVDSGRLR-LARE--MKE-SLSALAVRDDGRFVAVGTMF--TGSVFVYI  289 (297)
Q Consensus       237 g~~d~~i~~w-d~~~~~~~-~~~~--~~~-~v~~~~~s~dg~~l~~~~~~--dg~i~vwd  289 (297)
                         +...+++ +..+++.. ..+.  ... .|..+.+||||..++.....  ++.|.+=-
T Consensus        86 ---~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~  142 (253)
T PF10647_consen   86 ---SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG  142 (253)
T ss_pred             ---CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence               4455555 33333222 1121  122 69999999999987765520  45666543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=93.67  E-value=5.6  Score=36.48  Aligned_cols=64  Identities=13%  Similarity=0.023  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCC-----CcEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeCC------CcEEEEEcCCCc
Q psy3337         127 RNGDLMVTGGTD-----GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKD------GKAFVWNSKNGS  192 (297)
Q Consensus       127 ~~g~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------~~v~lwd~~~~~  192 (297)
                      -+++.++.||.+     ..+..||..+.+-  ...+...... .+++ .-++..++.|+.+      ..+..||+.+.+
T Consensus       341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            367777888765     3467788765431  1112111111 1122 2256666666632      357888887654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.64  E-value=0.23  Score=43.15  Aligned_cols=162  Identities=10%  Similarity=0.153  Sum_probs=88.4

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-eEEeccc-cC----Cee-EEEEccCCCEEEEEeCCCcEEEE-
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-LLHIEAH-SK----EID-DVDFSISGEQIVSIAKDGKAFVW-  186 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~-~~----~v~-~~~~sp~~~~l~s~~~d~~v~lw-  186 (297)
                      ..-..|..+-+.|||+.|..-+. ..+.++++.+... .+.+... .+    .|+ .+..-..|.-++.+..||-|.-| 
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            45566778889999998876655 6778888754321 1122111 11    122 22222345567788889888877 


Q ss_pred             EcCCC-cee-eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeE
Q psy3337         187 NSKNG-SLS-KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLS  264 (297)
Q Consensus       187 d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~  264 (297)
                      |.+.+ ++. ....       .+.+....+..+.-..+.+-++....        .|++..+.....+.+-.-..-+.+.
T Consensus       297 dvr~~~~p~l~h~R-------~f~l~pa~~~~l~pe~~rkgF~~l~~--------~G~L~~f~st~~~~lL~~~~~~~~~  361 (733)
T COG4590         297 DVRRDGQPHLNHIR-------NFKLAPAEVQFLLPETNRKGFYSLYR--------NGTLQSFYSTSEKLLLFERAYQAPQ  361 (733)
T ss_pred             eeecCCCCcceeee-------ccccCcccceeeccccccceEEEEcC--------CCceeeeecccCcceehhhhhcCcc
Confidence            55533 211 1111       11111111111111222333444433        6777777665544443323333467


Q ss_pred             EEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         265 ALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       265 ~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      -+++||++.+|++-.  .|.++++.+.+..
T Consensus       362 ~~~~Sp~~~~Ll~e~--~gki~~~~l~Nr~  389 (733)
T COG4590         362 LVAMSPNQAYLLSED--QGKIRLAQLENRN  389 (733)
T ss_pred             eeeeCcccchheeec--CCceEEEEecCCC
Confidence            789999999998776  6889999887643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.47  E-value=0.54  Score=26.02  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             CCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEc
Q psy3337         221 PKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVR  269 (297)
Q Consensus       221 ~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s  269 (297)
                      |+++.|+++..       .++.|.++|..+++.+..+........++|+
T Consensus         1 pd~~~lyv~~~-------~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNS-------GSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeC-------CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            56777776543       4789999999998888887765445666653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.26  E-value=4  Score=33.50  Aligned_cols=159  Identities=13%  Similarity=0.072  Sum_probs=88.6

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeee-EEe--ccccCCeeEEEEccCCCEEEEEe
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHI--EAHSKEIDDVDFSISGEQIVSIA  178 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-~~~--~~~~~~v~~~~~sp~~~~l~s~~  178 (297)
                      |..+|+....-. +....-..|..-|||..-++-+.. -|.-.|.++.+.. ..+  ...........|.+.|++.+++.
T Consensus        89 dP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q  166 (353)
T COG4257          89 DPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ  166 (353)
T ss_pred             CCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec
Confidence            566777655544 655556688888888655554333 4555665555432 122  22244677889999999988875


Q ss_pred             CC---------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         179 KD---------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       179 ~d---------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      ..         +.|++|+...|        ..|.            .|+.+|+|...++.-.        +..|-..|..
T Consensus       167 ~G~yGrLdPa~~~i~vfpaPqG--------~gpy------------Gi~atpdGsvwyasla--------gnaiaridp~  218 (353)
T COG4257         167 IGAYGRLDPARNVISVFPAPQG--------GGPY------------GICATPDGSVWYASLA--------GNAIARIDPF  218 (353)
T ss_pred             cccceecCcccCceeeeccCCC--------CCCc------------ceEECCCCcEEEEecc--------ccceEEcccc
Confidence            32         22333332211        1121            1556889887777433        5677777776


Q ss_pred             CCceEE--Eecc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         250 SGRLRL--AREM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       250 ~~~~~~--~~~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      ++....  .-.. +..-+.+--+|.|+.-++... .+.+..||..
T Consensus       219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg-~g~l~rfdPs  262 (353)
T COG4257         219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-TGSLHRFDPS  262 (353)
T ss_pred             cCCcceecCCCcccccccccccCccCcEEEeccC-CceeeEeCcc
Confidence            652211  1111 222444445666666666554 6666666643

>PRK10115 protease 2; Provisional

Probab=92.79  E-value=9.1  Score=36.38  Aligned_cols=94  Identities=7%  Similarity=0.055  Sum_probs=54.2

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC------CcEEEEeCCCC--eeeEEeccccCCe
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD------GHLRLWSFPKM--KPLLHIEAHSKEI  162 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------~~i~iwd~~~~--~~~~~~~~~~~~v  162 (297)
                      .|++.-.|++ ++.+|..+.... ....  ..++|++|++.|+....+      ..|+.+++.++  +....+.......
T Consensus       148 ~G~E~~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~  224 (686)
T PRK10115        148 LSRRQYGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTF  224 (686)
T ss_pred             CCcEEEEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCE
Confidence            3444456777 777776443332 2222  469999999877665432      36778888777  3333444333333


Q ss_pred             e-EEEEccCCCEEEEEe---CCCcEEEEEc
Q psy3337         163 D-DVDFSISGEQIVSIA---KDGKAFVWNS  188 (297)
Q Consensus       163 ~-~~~~sp~~~~l~s~~---~d~~v~lwd~  188 (297)
                      . .+..+.++++++..+   .++.+.+|+.
T Consensus       225 ~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        225 YVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            3 333344777766443   3457888885

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.55  E-value=0.74  Score=25.13  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=19.6

Q ss_pred             CeEEEEEcCCCCEEEEEecCC--CeEEEE
Q psy3337         262 SLSALAVRDDGRFVAVGTMFT--GSVFVY  288 (297)
Q Consensus       262 ~v~~~~~s~dg~~l~~~~~~d--g~i~vw  288 (297)
                      .-....|||||+.|+-.+..+  |...||
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            378899999999988777645  666655

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.47  E-value=7.2  Score=34.46  Aligned_cols=89  Identities=9%  Similarity=0.119  Sum_probs=55.1

Q ss_pred             CceEEEEeeCCCeEEEEecCC-------CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc-cCCeeEEEE
Q psy3337          96 EKNLRFGFKTFDSVQTVFAGS-------ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH-SKEIDDVDF  167 (297)
Q Consensus        96 d~~i~~~~~~~~~~~~~~~~h-------~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~  167 (297)
                      +..+.+....+..+..+. .+       .+++..+++||+|+++|.-..+|.+.+....-.+....+... ......+.|
T Consensus       189 ~~~~~i~~~~g~~i~~i~-~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~W  267 (410)
T PF04841_consen  189 DRVVEILLANGETIYIID-ENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAW  267 (410)
T ss_pred             CcceEEEEecCCEEEEEE-ccccccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEE
Confidence            444555444555555444 22       357999999999999999889999988876544455444433 345567777


Q ss_pred             ccCCCEEEEEeCCCcEEEEE
Q psy3337         168 SISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd  187 (297)
                      ..+...++.-  ...+.+..
T Consensus       268 CG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  268 CGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             ECCCcEEEEe--CCEEEEEC
Confidence            7654433332  33444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.34  E-value=7.4  Score=35.18  Aligned_cols=153  Identities=11%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             EEEEE---cCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceE
Q psy3337         131 LMVTG---GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKY  207 (297)
Q Consensus       131 ~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~  207 (297)
                      ++++.   .......++|. .|.....+.........+.+.++|.+++...  ..+..+|+ .|+.+..+......   .
T Consensus       117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~---~  189 (477)
T PF05935_consen  117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGY---Y  189 (477)
T ss_dssp             EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTE---E
T ss_pred             EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcc---c
Confidence            44454   24556777774 4665555543333222267788998887665  77888887 46665554432200   0


Q ss_pred             EEEeeeeeeeeeCCCCeEEEEecc-------C-------cccc-cCCCCeEEEEeCCC-C-ceEE-------------Ee
Q psy3337         208 LFKRCRYGLVEDSPKRSRLFTLAN-------P-------LAQN-KRGISYVQQWDVDS-G-RLRL-------------AR  257 (297)
Q Consensus       208 ~~~~~~~~~~~~s~~~~~l~~~~~-------~-------~~~~-g~~d~~i~~wd~~~-~-~~~~-------------~~  257 (297)
                      .++    ..+..-|+|.+|+.+..       .       .++. -.....+..||+.. - ....             ..
T Consensus       190 ~~H----HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~  265 (477)
T PF05935_consen  190 DFH----HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG  265 (477)
T ss_dssp             -B-----S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred             ccc----cccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence            000    12445788887777662       0       0000 02223444454432 0 0000             00


Q ss_pred             ccCCC--eEEEEEcC-CCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         258 EMKES--LSALAVRD-DGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       258 ~~~~~--v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .....  +.++.+.+ ++.+|+++.. ...|...|..+++.
T Consensus       266 ~~~DW~H~Nsi~yd~~dd~iivSsR~-~s~V~~Id~~t~~i  305 (477)
T PF05935_consen  266 GGRDWLHINSIDYDPSDDSIIVSSRH-QSAVIKIDYRTGKI  305 (477)
T ss_dssp             TTSBS--EEEEEEETTTTEEEEEETT-T-EEEEEE-TTS-E
T ss_pred             CCCCccccCccEEeCCCCeEEEEcCc-ceEEEEEECCCCcE
Confidence            11122  89999998 6666666665 67888888777764

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.34  E-value=4.6  Score=31.85  Aligned_cols=104  Identities=15%  Similarity=0.081  Sum_probs=60.0

Q ss_pred             CEEEEEeCCCcEEEEEcCCC--ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC---eEEEE
Q psy3337         172 EQIVSIAKDGKAFVWNSKNG--SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS---YVQQW  246 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~---~i~~w  246 (297)
                      ..|+.+.....|.+|++...  +.+..+..           -.++..+.++..|.+|+++-.     -....   .+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-----------v~~V~~l~y~~~GDYlvTlE~-----k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-----------VGRVLQLVYSEAGDYLVTLEE-----KNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-----------hhheeEEEeccccceEEEEEe-----ecCCccceEEEEE
Confidence            34444466678999998722  33333321           123445778999999999865     11122   55554


Q ss_pred             ---eCC--CCce---------------------EE--EeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         247 ---DVD--SGRL---------------------RL--AREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       247 ---d~~--~~~~---------------------~~--~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                         ...  ..+.                     +.  .++....+.+++..|-..-|++|+  ++.+.+|.+...
T Consensus        93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen   93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence               211  0111                     11  122233477888888666666677  678999987543

>KOG3630|consensus

Probab=91.56  E-value=1.4  Score=42.83  Aligned_cols=141  Identities=9%  Similarity=-0.052  Sum_probs=83.4

Q ss_pred             CcEEEEEEecCCCEEEE--EcCCCcEEEEeCCCCee-----eEEecc------ccCCeeEEEEccCC-CEEEEEeCCCcE
Q psy3337         118 SLQRVVRLSRNGDLMVT--GGTDGHLRLWSFPKMKP-----LLHIEA------HSKEIDDVDFSISG-EQIVSIAKDGKA  183 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s--~~~d~~i~iwd~~~~~~-----~~~~~~------~~~~v~~~~~sp~~-~~l~s~~~d~~v  183 (297)
                      -.+..+...+|+...++  .+.+-.|..||+++-..     ...|..      ......++.|+|.- ...+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34556666777655443  33444788999864321     111221      22345678888853 245566678888


Q ss_pred             EEEEcCCC-ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC--
Q psy3337         184 FVWNSKNG-SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK--  260 (297)
Q Consensus       184 ~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~--  260 (297)
                      ++.-+..- ..+..+.    .       .....+++|+|.|+.++.        |...|++.-|-.. ++....+...  
T Consensus       181 ~V~~~~~~~~~v~s~p----~-------t~~~Tav~WSprGKQl~i--------G~nnGt~vQy~P~-leik~~ip~Pp~  240 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP----V-------TNSQTAVLWSPRGKQLFI--------GRNNGTEVQYEPS-LEIKSEIPEPPV  240 (1405)
T ss_pred             hhhhhhhhhhhhcccC----c-------ccceeeEEeccccceeeE--------ecCCCeEEEeecc-cceeecccCCCc
Confidence            87765421 1112111    1       112235889999999998        5558999888765 4444444332  


Q ss_pred             ---CCeEEEEEcCCCCEEEEE
Q psy3337         261 ---ESLSALAVRDDGRFVAVG  278 (297)
Q Consensus       261 ---~~v~~~~~s~dg~~l~~~  278 (297)
                         ..|.+++|-....+|++-
T Consensus       241 ~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  241 EENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             CCCcceeEEEEecceeEEEEe
Confidence               239999998877776653

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.55  E-value=1.2  Score=40.87  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCCcEEEEeCCC----CeeeE--Eecc--------------------ccCCeeEEEEcc----CCCEEEEE
Q psy3337         128 NGDLMVTGGTDGHLRLWSFPK----MKPLL--HIEA--------------------HSKEIDDVDFSI----SGEQIVSI  177 (297)
Q Consensus       128 ~g~~l~s~~~d~~i~iwd~~~----~~~~~--~~~~--------------------~~~~v~~~~~sp----~~~~l~s~  177 (297)
                      +...++.+..||.+.......    +....  .+..                    ....+..+++++    +..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            566778888888887776543    11111  1110                    123455666666    67899999


Q ss_pred             eCCCcEEEEEcCCCceeeeeecc
Q psy3337         178 AKDGKAFVWNSKNGSLSKELKWN  200 (297)
Q Consensus       178 ~~d~~v~lwd~~~~~~~~~~~~~  200 (297)
                      +.|+++++||+.+++++.+....
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEETT
T ss_pred             eCCCeEEEEECCCCeEEEEeccc
Confidence            99999999999999997766443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.11  E-value=4.5  Score=29.28  Aligned_cols=111  Identities=16%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCc--------eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNGS--------LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      -.|......|+.++.-++|.|++.....        .+..+.....   ...+.+.++   .-..+...|+..+      
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~---italaaG~l---~~~~~~D~LliGt------   71 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQE---ITALAAGRL---KPDDGRDCLLIGT------   71 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCc---eEEEEEEec---CCCCCcCEEEEec------
Confidence            4565566678888888999999875332        2222222110   111111111   1122333444422      


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcC----CCCEEEEEecCCCeEEEEEeCC
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRD----DGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~----dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                         ...|..||+.....+.....++.|.++.+-.    +..++++|+  +..|.-||..-
T Consensus        72 ---~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG--ncsi~Gfd~~G  126 (136)
T PF14781_consen   72 ---QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG--NCSIQGFDYEG  126 (136)
T ss_pred             ---cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc--eEEEEEeCCCC
Confidence               5789999999876666666666688777732    345566665  56666666543

>KOG1897|consensus

Probab=91.04  E-value=10  Score=36.69  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=75.3

Q ss_pred             EEEEeCCCCeeeEEec--cc--cCCeeEEEEccC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeccCCCCc
Q psy3337         141 LRLWSFPKMKPLLHIE--AH--SKEIDDVDFSIS-GEQIVSIAK----------DGKAFVWNSKNGSLSKELKWNTPDNI  205 (297)
Q Consensus       141 i~iwd~~~~~~~~~~~--~~--~~~v~~~~~sp~-~~~l~s~~~----------d~~v~lwd~~~~~~~~~~~~~~~~~~  205 (297)
                      ++++|-++.+.+...+  ..  ...+.+..|..| +.+++.|..          .|.|.+|....+..+....-+.-.+ 
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G-  830 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG-  830 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc-
Confidence            5666655544332211  11  123555568766 667776642          3666677665533333332111111 


Q ss_pred             eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCe
Q psy3337         206 KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGS  284 (297)
Q Consensus       206 ~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~  284 (297)
                       .....     +  --+|++++.+          ...|++|++.+.+.++.-..+.. +..+.+.-.|..+++|.. -+.
T Consensus       831 -av~aL-----~--~fngkllA~I----------n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-m~S  891 (1096)
T KOG1897|consen  831 -AVYAL-----V--EFNGKLLAGI----------NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL-MRS  891 (1096)
T ss_pred             -ceeeh-----h--hhCCeEEEec----------CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec-cce
Confidence             11111     1  1257778776          45899999998866665555443 888888889999999987 777


Q ss_pred             EEEEEeC
Q psy3337         285 VFVYIAF  291 (297)
Q Consensus       285 i~vwd~~  291 (297)
                      +.+...+
T Consensus       892 itll~y~  898 (1096)
T KOG1897|consen  892 ITLLQYK  898 (1096)
T ss_pred             EEEEEEe
Confidence            7665443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.83  E-value=8.2  Score=34.61  Aligned_cols=135  Identities=11%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             CCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCC-------EEEEEcCCCcEEEEeCC-CCeeeEEeccccCCee
Q psy3337          92 IDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGD-------LMVTGGTDGHLRLWSFP-KMKPLLHIEAHSKEID  163 (297)
Q Consensus        92 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-------~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~  163 (297)
                      .+..+..-++|++.|+.+.... -|...  -+.|.|+.+       .-+.|-.+..|.-.|.+ .|..+.... ....++
T Consensus       486 g~~~~kLykmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~t  561 (776)
T COG5167         486 GGERDKLYKMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKT  561 (776)
T ss_pred             CCCcccceeeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccc
Confidence            3344444455999999999887 55554  677888532       23345566667666765 332222221 222333


Q ss_pred             EEEEcc----CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         164 DVDFSI----SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       164 ~~~~sp----~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      --.|+.    ..-+++.++..|-|++||.-.-.....+.+-.          ..+..+..+.+|+.+++..         
T Consensus       562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG----------~aIk~idvta~Gk~ilaTC---------  622 (776)
T COG5167         562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLG----------DAIKHIDVTANGKHILATC---------  622 (776)
T ss_pred             cccccccccccCceEEEecCCCceeeehhhcchhhhcCcccc----------cceeeeEeecCCcEEEEee---------
Confidence            333433    34589999999999999953211111111111          1122245577787766644         


Q ss_pred             CCeEEEEeCC
Q psy3337         240 ISYVQQWDVD  249 (297)
Q Consensus       240 d~~i~~wd~~  249 (297)
                      ..+|.+-|++
T Consensus       623 k~yllL~d~~  632 (776)
T COG5167         623 KNYLLLTDVP  632 (776)
T ss_pred             cceEEEEecc
Confidence            3566666654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.68  E-value=9.2  Score=32.16  Aligned_cols=110  Identities=18%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         156 EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      ..-...+..+..+++|++++++.....+.-||.-... -....         .....++..+.|.|++...+.. .    
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~---------r~~~~riq~~gf~~~~~lw~~~-~----  205 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHN---------RNSSRRIQSMGFSPDGNLWMLA-R----  205 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE-----------SSS-EEEEEE-TTS-EEEEE-T----
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEc---------cCccceehhceecCCCCEEEEe-C----
Confidence            3445678889999999999988777667788753211 11111         1123456678899998876654 3    


Q ss_pred             ccCCCCeEEEEeC-CCCceEEE----eccCCC-eEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         236 NKRGISYVQQWDV-DSGRLRLA----REMKES-LSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       236 ~g~~d~~i~~wd~-~~~~~~~~----~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                          .+.|+.=+. ...+....    +....- +..++|.+++...++|+  .|.+.
T Consensus       206 ----Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l~  256 (302)
T PF14870_consen  206 ----GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTLL  256 (302)
T ss_dssp             ----TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES--TT-EE
T ss_pred             ----CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC--CccEE
Confidence                567776662 22222111    111222 89999999888887776  45443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.57  E-value=5.4  Score=37.92  Aligned_cols=71  Identities=18%  Similarity=0.301  Sum_probs=49.7

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCC----------Cee--e-EEe--------ccccCCeeEEEEccC---CCEE
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPK----------MKP--L-LHI--------EAHSKEIDDVDFSIS---GEQI  174 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~sp~---~~~l  174 (297)
                      .|..+.+||+|.+|+..|..+.+ |..+..          ++.  . +++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            57889999999999988876644 333321          111  1 111        134457889999995   5788


Q ss_pred             EEEeCCCcEEEEEcCC
Q psy3337         175 VSIAKDGKAFVWNSKN  190 (297)
Q Consensus       175 ~s~~~d~~v~lwd~~~  190 (297)
                      +.-..|+++++||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            8888999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.42  E-value=12  Score=33.07  Aligned_cols=146  Identities=14%  Similarity=0.090  Sum_probs=81.3

Q ss_pred             CEEEEEcCCCcEEEEeCCCCe-----eeEEeccccCCeeEEEEc---c--CCCEEEEEeCCCcEEEEEcC--CCc-----
Q psy3337         130 DLMVTGGTDGHLRLWSFPKMK-----PLLHIEAHSKEIDDVDFS---I--SGEQIVSIAKDGKAFVWNSK--NGS-----  192 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s---p--~~~~l~s~~~d~~v~lwd~~--~~~-----  192 (297)
                      ..++.|+..|.++||+.....     .+.+.+ -..+|..+..-   +  +...||. -.-..+.+|.+.  .|.     
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            689999999999999985432     111111 24567766653   2  2233443 456678888773  111     


Q ss_pred             --eeeeeeccCCCCceEEEEeeeeeeeeeCCC-CeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEc
Q psy3337         193 --LSKELKWNTPDNIKYLFKRCRYGLVEDSPK-RSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVR  269 (297)
Q Consensus       193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s  269 (297)
                        .+..+..|.-....+.+....|+    ... ...+..        -+.||.+.+|+-+..-..+.+...--...+++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fg----g~~~~~~IcV--------QS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~  183 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFG----GVKGRDFICV--------QSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYC  183 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECC----CCCCceEEEE--------EecCceEEEEeCCcEEEEEEcCCCCCCcCeEEe
Confidence              11222222211112222222222    122 233444        345999999998764434444432225567888


Q ss_pred             CCCCEEEEEecCCCeEEEEEe
Q psy3337         270 DDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +.-..|++++. +..+.-|..
T Consensus       184 ~~tDsfvt~ss-s~~l~~Yky  203 (418)
T PF14727_consen  184 PRTDSFVTASS-SWTLECYKY  203 (418)
T ss_pred             ecCCEEEEecC-ceeEEEecH
Confidence            88888888887 778877764

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.41  E-value=11  Score=32.66  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=61.3

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCC-CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc-CCeeEEEEccC
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGS-ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS-KEIDDVDFSIS  170 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~  170 (297)
                      ..++.|.- +..++..+-...... ...+.+-.+..+|+ ++.++.++.++.+|..+|+.+....... ..+.....-.+
T Consensus        75 ~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~  153 (370)
T COG1520          75 TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGD  153 (370)
T ss_pred             cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcC
Confidence            44555555 777777543222011 12222333333665 7788889999999988999888776555 11222222224


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      + .+...+.++.+...|..+|...-....
T Consensus       154 ~-~v~~~s~~g~~~al~~~tG~~~W~~~~  181 (370)
T COG1520         154 G-TVYVGTDDGHLYALNADTGTLKWTYET  181 (370)
T ss_pred             c-EEEEecCCCeEEEEEccCCcEEEEEec
Confidence            4 333344778899989888887666543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.19  E-value=2.6  Score=32.16  Aligned_cols=29  Identities=14%  Similarity=0.330  Sum_probs=23.7

Q ss_pred             CeeEEEEccCC------CEEEEEeCCCcEEEEEcC
Q psy3337         161 EIDDVDFSISG------EQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       161 ~v~~~~~sp~~------~~l~s~~~d~~v~lwd~~  189 (297)
                      .|..++|||.|      -+|++.+.++.|.||...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            68899999943      367888899999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.12  E-value=2  Score=23.61  Aligned_cols=40  Identities=10%  Similarity=0.044  Sum_probs=26.2

Q ss_pred             cCCCEEEE-EcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337         127 RNGDLMVT-GGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus       127 ~~g~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      |++++|++ ...++.|.++|..+++.+..+.. ......+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            56765554 44688999999988887777654 223334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.00  E-value=8.9  Score=32.70  Aligned_cols=118  Identities=14%  Similarity=0.208  Sum_probs=62.2

Q ss_pred             CCeeEEEEccCCCEEEEEeCCCc------EEEEEcCC--C--cee---eeeeccCCCCceEEEEeeeeeeeeeCCCCeEE
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGK------AFVWNSKN--G--SLS---KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRL  226 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~------v~lwd~~~--~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  226 (297)
                      +.+..|.+.|++..+++.+.++.      ++.+++..  +  ..+   .....+.+.+..+.....-.-.+++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            46788999876566666677777      66555543  1  111   11111112221111001111235666777766


Q ss_pred             EEeccCcccccCCCCeEEEEeCCCCceEEEec----------------cCCCeEEEEEcCCCCEEEEEec
Q psy3337         227 FTLANPLAQNKRGISYVQQWDVDSGRLRLARE----------------MKESLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       227 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~----------------~~~~v~~~~~s~dg~~l~~~~~  280 (297)
                      ++.-..  ........|+.++.. |+....+.                .+....+|+++|||+.|+++.+
T Consensus       100 is~E~~--~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen  100 ISSEGG--RTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEeCCc--cCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            664430  000112778888876 55543331                1223889999999997777654

>PHA03098 kelch-like protein; Provisional

Probab=89.97  E-value=15  Score=33.61  Aligned_cols=65  Identities=9%  Similarity=-0.004  Sum_probs=34.5

Q ss_pred             ecCCCEEEEEcCCC------cEEEEeCCCCeee--EEeccccCCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc
Q psy3337         126 SRNGDLMVTGGTDG------HLRLWSFPKMKPL--LHIEAHSKEIDDVDFSISGEQIVSIAKD-----GKAFVWNSKNGS  192 (297)
Q Consensus       126 s~~g~~l~s~~~d~------~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----~~v~lwd~~~~~  192 (297)
                      ..++..++.||.++      .+..||..+.+-.  ..+.........+.  -++..++.|+.+     ..+..||+.+.+
T Consensus       292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            34566677776543      5777887665431  11111111112222  256677777765     346778876554

>KOG3630|consensus

Probab=89.79  E-value=2.7  Score=41.02  Aligned_cols=118  Identities=13%  Similarity=0.007  Sum_probs=67.3

Q ss_pred             CeeEEEEccCCCEEEE--EeCCCcEEEEEcCCCceee-----eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         161 EIDDVDFSISGEQIVS--IAKDGKAFVWNSKNGSLSK-----ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s--~~~d~~v~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      .+..+..++|+...+.  .+.+-.|+.||+++-..-.     .+..+.-......+    ...+.|+|.-..-..+    
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf----~~~~~wnP~vp~n~av----  173 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVF----QLKNVWNPLVPLNSAV----  173 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccc----cccccccCCccchhhh----
Confidence            4556666777665443  3445578999987532211     11111100000111    1125566653222211    


Q ss_pred             ccccCCCCeEEEEeCCC-CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         234 AQNKRGISYVQQWDVDS-GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                         ...|..|++..+.. .+.+..+......++++|+|-|+.+++|.. .|++.-|..
T Consensus       174 ---~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n-nGt~vQy~P  227 (1405)
T KOG3630|consen  174 ---DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN-NGTEVQYEP  227 (1405)
T ss_pred             ---hccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC-CCeEEEeec
Confidence               23477888877654 333444454555899999999999999999 999988764

>KOG4441|consensus

Probab=89.56  E-value=17  Score=33.66  Aligned_cols=178  Identities=15%  Similarity=0.148  Sum_probs=84.5

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC------CcEEEEeCCCCe--eeEEeccccCCeeEEEE
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD------GHLRLWSFPKMK--PLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~  167 (297)
                      ..+.. |+.+++............-.++++. ++...++||.|      .++..||..+.+  .+..+........... 
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE-
Confidence            34555 7666644433321122222333333 55788889888      357778876554  2222222111111111 


Q ss_pred             ccCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC--C
Q psy3337         168 SISGEQIVSIAKDGK-----AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG--I  240 (297)
Q Consensus       168 sp~~~~l~s~~~d~~-----v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~--d  240 (297)
                       -+|...++|+.||.     +-.||..+.+--..-  ..+.. ...+.     ..  .-+|...+..+.    .++.  -
T Consensus       379 -l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~-r~~~g-----v~--~~~g~iYi~GG~----~~~~~~l  443 (571)
T KOG4441|consen  379 -LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTR-RSGHG-----VA--VLGGKLYIIGGG----DGSSNCL  443 (571)
T ss_pred             -ECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcc-eeeeE-----EE--EECCEEEEEcCc----CCCcccc
Confidence             26778888988864     666776644321111  00000 11111     11  123443333222    0111  2


Q ss_pred             CeEEEEeCCCCc--eEEEeccCCCeEEEEEcCCCCEEEEEecCCCe-----EEEEEeCCc
Q psy3337         241 SYVQQWDVDSGR--LRLAREMKESLSALAVRDDGRFVAVGTMFTGS-----VFVYIAFSL  293 (297)
Q Consensus       241 ~~i~~wd~~~~~--~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~-----i~vwd~~~~  293 (297)
                      ..+..||..+.+  .+..+.....-..++. -++.+.+.|+. |+.     |..||..+.
T Consensus       444 ~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~-~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGF-DGTSALSSVERYDPETN  501 (571)
T ss_pred             ceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCc-cCCCccceEEEEcCCCC
Confidence            578889988743  3333332222222222 26777778876 663     667777654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.48  E-value=17  Score=33.33  Aligned_cols=144  Identities=9%  Similarity=0.022  Sum_probs=78.6

Q ss_pred             CCCCCCCceEEE-Ee--eCCCeEE---EEecCCCCcEEEEEEecCC----CEEEEEcCCCcEEEEeCC-----CCeeeEE
Q psy3337          90 NSIDSKEKNLRF-GF--KTFDSVQ---TVFAGSESLQRVVRLSRNG----DLMVTGGTDGHLRLWSFP-----KMKPLLH  154 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~--~~~~~~~---~~~~~h~~~v~~~~~s~~g----~~l~s~~~d~~i~iwd~~-----~~~~~~~  154 (297)
                      ..+-.+.+.|.+ ++  .+|+...   ... |.-..|..+.|.|-+    ..|++.-....|.+|.+.     ..+.+..
T Consensus        24 GlaWTDGkqVvLT~L~l~~gE~kfGds~vi-GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~s  102 (671)
T PF15390_consen   24 GLAWTDGKQVVLTDLQLHNGEPKFGDSKVI-GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMS  102 (671)
T ss_pred             ceEecCCCEEEEEeeeeeCCccccCCccEe-eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceee
Confidence            344444555665 43  3444221   111 555668999999953    345555677899999984     2222222


Q ss_pred             ecccc---C--CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         155 IEAHS---K--EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       155 ~~~~~---~--~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      -.++-   -  --...-|+|....|+.-.....-.+++++.....-......         ...+.+-+|.+||++|+.+
T Consensus       103 QtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---------~G~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen  103 QTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---------SGLIHCACWTKDGQRLVVA  173 (671)
T ss_pred             eeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---------CceEEEEEecCcCCEEEEE
Confidence            11111   1  12467799988887766554444456665332222221111         1223346699999988876


Q ss_pred             ccCcccccCCCCeEEEEeCCC
Q psy3337         230 ANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      -.      + .=.-++||-..
T Consensus       174 vG------S-sLHSyiWd~~q  187 (671)
T PF15390_consen  174 VG------S-SLHSYIWDSAQ  187 (671)
T ss_pred             eC------C-eEEEEEecCch
Confidence            42      2 33567888664

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.48  E-value=15  Score=32.84  Aligned_cols=56  Identities=9%  Similarity=0.026  Sum_probs=38.4

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe--eeEEec-----cccCCeeEEEEccCC
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK--PLLHIE-----AHSKEIDDVDFSISG  171 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~-----~~~~~v~~~~~sp~~  171 (297)
                      .-..-+.++|.|||++|++--..|.|++++..++.  .+..+.     ........|+|+|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            33445799999999888776557999999865443  222121     124668999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.92  E-value=17  Score=32.58  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=26.2

Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~  192 (297)
                      .-...+.|+|.||+++|++--..|.|++++..++.
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~   62 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGE   62 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence            34467899999999877766546999999865543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2280|consensus

Probab=88.86  E-value=19  Score=33.94  Aligned_cols=176  Identities=15%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             eEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE--e--ccccCCeeEEEEccCCCE
Q psy3337          98 NLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH--I--EAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~--~--~~~~~~v~~~~~sp~~~~  173 (297)
                      .|+|-..+|+.+..+...|. .+-.+.|+.+.. |++-..+|++++|++-. +.+..  +  ......|....|..+|-.
T Consensus        65 ~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   65 YIRIFNISGQLLGRILWKHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eEEEEeccccchHHHHhcCC-CeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceE
Confidence            45664456777766654555 566899997764 66667999999999742 22211  1  122233555555555544


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeccCCCCc--eEEEEeeeeeeeeeCCC--CeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         174 IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNI--KYLFKRCRYGLVEDSPK--RSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~--~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      +++  .+|.+.+-.-.....+.++..- |...  ...++       .+.|.  ...++-+..+      .--.+..-+..
T Consensus       142 vlt--~~g~v~~i~~~~~~~~~~~~di-P~~~~~~~~Wt-------~~~~~~~~~~ll~v~~~------v~~~~~q~~~~  205 (829)
T KOG2280|consen  142 VLT--VSGQVILINGVEEPKLRKMPDI-PYNELPKSCWT-------VFQPHRQSTILLDVDVA------VGLHICQVEES  205 (829)
T ss_pred             EEe--cCCcEEEEcCCCcchhhhCCCC-CCccCCCccee-------EecCCCcceeEEeechh------hhhcccceecc
Confidence            433  3455544321111122222110 1000  00000       01121  1112211100      00011111111


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ..+.......++.+..+.+||+.++|+.=+. .|.|.+-+....
T Consensus       206 ~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~-~G~i~~vs~D~~  248 (829)
T KOG2280|consen  206 RVQLHALSWPNSSVVKISVSPNRRFLALYTE-TGKIWVVSIDLS  248 (829)
T ss_pred             cccccccCCCCceEEEEEEcCCcceEEEEec-CCcEEEEecchh
Confidence            1222222233456889999999999999998 999988776543

>PHA02713 hypothetical protein; Provisional

Probab=88.44  E-value=21  Score=33.08  Aligned_cols=64  Identities=8%  Similarity=0.120  Sum_probs=35.1

Q ss_pred             cCCCEEEEEcCC------CcEEEEeCCCCe--eeEEeccccCCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCc
Q psy3337         127 RNGDLMVTGGTD------GHLRLWSFPKMK--PLLHIEAHSKEIDDVDFSISGEQIVSIAKDG-----KAFVWNSKNGS  192 (297)
Q Consensus       127 ~~g~~l~s~~~d------~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~-----~v~lwd~~~~~  192 (297)
                      -++..++.||.+      ..+..||..+..  .+..+.........+  .-++...+.|+.++     ++..||+.+..
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            366777777754      347788876653  122221111111122  22667777787653     47788987653

>KOG2377|consensus

Probab=88.30  E-value=16  Score=32.39  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=29.6

Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~  191 (297)
                      ..++|.++.||+|.+.||.--.+.+|.+++....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d   98 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD   98 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence            4568999999999999999999999999987433

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.90  E-value=2.9  Score=22.64  Aligned_cols=30  Identities=13%  Similarity=0.209  Sum_probs=19.4

Q ss_pred             cccCCeeEEEEccCCCEEEEEe-CC--CcEEEE
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIA-KD--GKAFVW  186 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~-~d--~~v~lw  186 (297)
                      .....-....|+|||+.|+-++ .+  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455677899999999877554 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.64  E-value=7.1  Score=31.66  Aligned_cols=145  Identities=11%  Similarity=0.100  Sum_probs=72.7

Q ss_pred             EEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEec------cccCCeeEEEEccCC
Q psy3337         101 FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIE------AHSKEIDDVDFSISG  171 (297)
Q Consensus       101 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~sp~~  171 (297)
                      .|+.+++.. .+.........+-.+-+||++|.+|+..   ..+++++.........+.      .....--++..-|||
T Consensus        51 yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG  129 (243)
T PF07250_consen   51 YDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDG  129 (243)
T ss_pred             EecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCC
Confidence            377776543 3332344444455678999999988752   357888764311011111      111222244456799


Q ss_pred             CEEEEEeCCCc-EEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         172 EQIVSIAKDGK-AFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       172 ~~l~s~~~d~~-v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      +.|+.|+.... .-.|.... ......+......  .......-.-.+...|+|+.++.+..          .-.+||..
T Consensus       130 ~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~--~~~~~~nlYP~~~llPdG~lFi~an~----------~s~i~d~~  197 (243)
T PF07250_consen  130 RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQT--SDTLPNNLYPFVHLLPDGNLFIFANR----------GSIIYDYK  197 (243)
T ss_pred             CEEEEeCcCCCcccccCCccCCCCceeeecchhh--hccCccccCceEEEcCCCCEEEEEcC----------CcEEEeCC
Confidence            99999887743 33444321 1111111100000  00000001112556899998877543          45567888


Q ss_pred             CCceEEEec
Q psy3337         250 SGRLRLARE  258 (297)
Q Consensus       250 ~~~~~~~~~  258 (297)
                      +.+.+..+.
T Consensus       198 ~n~v~~~lP  206 (243)
T PF07250_consen  198 TNTVVRTLP  206 (243)
T ss_pred             CCeEEeeCC
Confidence            776665554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.02  E-value=31  Score=33.43  Aligned_cols=163  Identities=15%  Similarity=0.153  Sum_probs=92.5

Q ss_pred             CCCCcEEEEEEe---c--C--CCEEEEEcCCCcEEEEeCC------C---------CeeeEEeccc---cCCeeEEEEcc
Q psy3337         115 GSESLQRVVRLS---R--N--GDLMVTGGTDGHLRLWSFP------K---------MKPLLHIEAH---SKEIDDVDFSI  169 (297)
Q Consensus       115 ~h~~~v~~~~~s---~--~--g~~l~s~~~d~~i~iwd~~------~---------~~~~~~~~~~---~~~v~~~~~sp  169 (297)
                      ....+|..|+|.   .  +  .++|++- ....+.|+...      .         ..++..+..+   ..+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456778888888   2  1  2455544 45566666611      0         1234444422   23577899999


Q ss_pred             -CCCEEEEEeCCCcEEEEEcCCCce----eeeeeccCCCCceEEEE---eeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         170 -SGEQIVSIAKDGKAFVWNSKNGSL----SKELKWNTPDNIKYLFK---RCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       170 -~~~~l~s~~~d~~v~lwd~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                       +...||.....|...|||+.....    ...+..... + .+.+.   ...+..+.|.++-..|+.+.         ..
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-g-si~~d~~e~s~w~rI~W~~~~~~lLv~~---------r~  224 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-G-SIIFDPEELSNWKRILWVSDSNRLLVCN---------RS  224 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCC-c-cccCCCcccCcceeeEecCCCCEEEEEc---------CC
Confidence             556899999999999999921111    111110000 0 00000   12334577888877777655         47


Q ss_pred             eEEEEeCCCCceEE-Eecc--CCCeEEEEEcCC--CCEEEEEecCCCeEEEEEeCC
Q psy3337         242 YVQQWDVDSGRLRL-AREM--KESLSALAVRDD--GRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       242 ~i~~wd~~~~~~~~-~~~~--~~~v~~~~~s~d--g~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .+.++|+.+..... ....  ...|..+.-+|+  ...++..+   ..|...++.+
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence            89999999865433 2222  233888888886  33333322   3576666655

These proteins are found in fungi.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.27  E-value=18  Score=29.92  Aligned_cols=151  Identities=9%  Similarity=-0.025  Sum_probs=92.0

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      -..++-.|||..-+++...+.|--.|..+++....-.+....-..+..-||+...++-+.. -|.-.|.++.+. ..+..
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~l  141 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPL  141 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeec
Confidence            3578889999989999999999999999998655444455566778888888776654333 344455544322 22322


Q ss_pred             cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC------CCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC
Q psy3337         200 NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR------GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR  273 (297)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~------~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~  273 (297)
                      ....      ...-.....|.+.|...++...     |-      ..+.|++|+...|         ...+.|+..|||.
T Consensus       142 p~~~------a~~nlet~vfD~~G~lWFt~q~-----G~yGrLdPa~~~i~vfpaPqG---------~gpyGi~atpdGs  201 (353)
T COG4257         142 PLEH------ADANLETAVFDPWGNLWFTGQI-----GAYGRLDPARNVISVFPAPQG---------GGPYGICATPDGS  201 (353)
T ss_pred             cccc------CCCcccceeeCCCccEEEeecc-----ccceecCcccCceeeeccCCC---------CCCcceEECCCCc
Confidence            1100      0111233557889988887554     21      1123344443321         2267888899988


Q ss_pred             EEEEEecCCCeEEEEEeCCc
Q psy3337         274 FVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       274 ~l~~~~~~dg~i~vwd~~~~  293 (297)
                      .-++.-. +..|-..|..++
T Consensus       202 vwyasla-gnaiaridp~~~  220 (353)
T COG4257         202 VWYASLA-GNAIARIDPFAG  220 (353)
T ss_pred             EEEEecc-ccceEEcccccC
Confidence            7777666 666666665544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.18  E-value=15  Score=29.00  Aligned_cols=72  Identities=11%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             CCCEEEEEcC--CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeec
Q psy3337         128 NGDLMVTGGT--DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVS-IAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       128 ~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      +|.++.+.+.  ...|++||+.+++.+..-.-....+..=-...-+..+.. .=.+|....+|.++-+.+..+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence            4456666554  347999999988876544322112211111111223322 23577788888887777766543

>PHA02790 Kelch-like protein; Provisional

Probab=85.81  E-value=27  Score=31.64  Aligned_cols=143  Identities=15%  Similarity=0.063  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcCC--CcEEEEeCCCCe--eeEEeccccCCeeEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeec
Q psy3337         127 RNGDLMVTGGTD--GHLRLWSFPKMK--PLLHIEAHSKEIDDVDFSISGEQIVSIAKDG---KAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       127 ~~g~~l~s~~~d--~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~---~v~lwd~~~~~~~~~~~~  199 (297)
                      -++...+.||.+  ..+..||..+.+  .+..+.........+  .-++...+.|+.++   .+..||.++.+-...-  
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~--  392 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP--  392 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCC--
Confidence            467777777754  357788875443  222222111111122  22667777777553   4667887655332211  


Q ss_pred             cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC--ceEEEeccCCCeEEEEEcCCCCEEEE
Q psy3337         200 NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG--RLRLAREMKESLSALAVRDDGRFVAV  277 (297)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~~  277 (297)
                      ..+.. .....      + ..-+++ |+.+       |   |.+.+||..+.  ..+..+.....-.+++ .-+|+..++
T Consensus       393 ~m~~~-r~~~~------~-~~~~~~-IYv~-------G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYvi  452 (480)
T PHA02790        393 STYYP-HYKSC------A-LVFGRR-LFLV-------G---RNAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLI  452 (480)
T ss_pred             CCCCc-cccce------E-EEECCE-EEEE-------C---CceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEE
Confidence            11110 00000      1 112233 4433       2   34677888763  2333332222112222 236788888


Q ss_pred             EecCC-----CeEEEEEeCCce
Q psy3337         278 GTMFT-----GSVFVYIAFSLQ  294 (297)
Q Consensus       278 ~~~~d-----g~i~vwd~~~~~  294 (297)
                      |+. +     ..+..||..+.+
T Consensus       453 GG~-~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        453 GGF-YRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCc-CCCcccceEEEEECCCCe
Confidence            875 4     357888887653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.56  E-value=5.6  Score=31.23  Aligned_cols=104  Identities=12%  Similarity=0.019  Sum_probs=61.9

Q ss_pred             CCCEEEEEeC--CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         170 SGEQIVSIAK--DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       170 ~~~~l~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      ++.++.+.+.  ...|++||+.+|+.+.......|.    .|...    +  ..-+.+++....       .++.-.++|
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~----~FgEG----i--t~~gd~~y~LTw-------~egvaf~~d  117 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT----VFGEG----I--TKLGDYFYQLTW-------KEGVAFKYD  117 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCcc----ccccc----e--eeccceEEEEEe-------ccceeEEEC
Confidence            4455666554  356999999999887765543211    11100    1  112334444332       478888999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      .++.+++..+.....-+.++-  |+..|+.+.. ..+++.-|..++
T Consensus       118 ~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdG-satL~frdP~tf  160 (262)
T COG3823         118 ADTLEELGRFSYEGEGWGLTS--DDKNLIMSDG-SATLQFRDPKTF  160 (262)
T ss_pred             hHHhhhhcccccCCcceeeec--CCcceEeeCC-ceEEEecCHHHh
Confidence            998888777766555455543  5666666665 666766665554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.53  E-value=34  Score=32.50  Aligned_cols=149  Identities=11%  Similarity=0.145  Sum_probs=80.0

Q ss_pred             CCEEEEEcCCCcEEEEeCCCCee------eEEec----------------cccCCeeEEEEcc--CCCEEEEEeCCCcEE
Q psy3337         129 GDLMVTGGTDGHLRLWSFPKMKP------LLHIE----------------AHSKEIDDVDFSI--SGEQIVSIAKDGKAF  184 (297)
Q Consensus       129 g~~l~s~~~d~~i~iwd~~~~~~------~~~~~----------------~~~~~v~~~~~sp--~~~~l~s~~~d~~v~  184 (297)
                      .++|+.+. .+.|.||++.....      ...+.                .....|+.|...-  ....|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56676654 67899998753221      11110                0112244444432  456788999999999


Q ss_pred             EEEcCCCc-eeeee----------eccCCCCceEEE-EeeeeeeeeeC--CCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         185 VWNSKNGS-LSKEL----------KWNTPDNIKYLF-KRCRYGLVEDS--PKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       185 lwd~~~~~-~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~s--~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      +|.+.+-. .+...          ....|.   +.+ -....+.++++  ...++|++.++        ...|.||-+..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~---f~~~v~~SaWGLdIh~~~~~rlIAVSsN--------s~~VTVFaf~l  196 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPF---FHLRVGASAWGLDIHDYKKSRLIAVSSN--------SQEVTVFAFAL  196 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCC---eEeecCCceeEEEEEecCcceEEEEecC--------CceEEEEEEec
Confidence            99763100 00000          000111   111 11233456776  66777777444        66677665543


Q ss_pred             C--ceE--EEeccCCCeEEEEEcCCC-----C-EEEEEecCCCeEEEEEe
Q psy3337         251 G--RLR--LAREMKESLSALAVRDDG-----R-FVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       251 ~--~~~--~~~~~~~~v~~~~~s~dg-----~-~l~~~~~~dg~i~vwd~  290 (297)
                      .  +..  ........|.+++|-++.     . +|++++- .|.+.+|++
T Consensus       197 ~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI-~G~v~~~~I  245 (717)
T PF08728_consen  197 VDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI-SGEVWTFKI  245 (717)
T ss_pred             cccccccccccccccCCCeeEeecCCCCCccceEEEEEec-cCcEEEEEE
Confidence            1  111  111222238999997643     2 6777777 999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.51  E-value=18  Score=29.36  Aligned_cols=140  Identities=8%  Similarity=0.002  Sum_probs=70.2

Q ss_pred             EEEEeCCCCeeeEEecc-ccCCeeEEEEccCCCEEEEEeC-C--CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeee
Q psy3337         141 LRLWSFPKMKPLLHIEA-HSKEIDDVDFSISGEQIVSIAK-D--GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGL  216 (297)
Q Consensus       141 i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~-d--~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (297)
                      -.+||+.+++.. .+.- ..-...+-.+-|||++|.+|+. +  ..+++++.-........... +   ...........
T Consensus        48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~-~---~~m~~~RWYpT  122 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES-P---NDMQSGRWYPT  122 (243)
T ss_pred             EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC-c---ccccCCCcccc
Confidence            347888776532 2221 2223444567789999998875 2  34777775430000000000 0   00000011123


Q ss_pred             eeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC--CceEE--Eecc-----CCC-eEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         217 VEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS--GRLRL--AREM-----KES-LSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       217 ~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~--~~~~~--~~~~-----~~~-v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                      ...-|||+.|+..       |+......+|.-..  .....  .+..     ... -.-+-+.|||+.++.+.. +.  .
T Consensus       123 ~~~L~DG~vlIvG-------G~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s--~  192 (243)
T PF07250_consen  123 ATTLPDGRVLIVG-------GSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GS--I  192 (243)
T ss_pred             ceECCCCCEEEEe-------CcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-Cc--E
Confidence            4456788877764       33444566666532  11111  1111     111 335667899999998886 54  4


Q ss_pred             EEEeCCcee
Q psy3337         287 VYIAFSLQM  295 (297)
Q Consensus       287 vwd~~~~~~  295 (297)
                      |||..+.+.
T Consensus       193 i~d~~~n~v  201 (243)
T PF07250_consen  193 IYDYKTNTV  201 (243)
T ss_pred             EEeCCCCeE
Confidence            557666544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2247|consensus

Probab=84.46  E-value=0.2  Score=43.91  Aligned_cols=137  Identities=11%  Similarity=0.188  Sum_probs=86.1

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeecc
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIV-SIAKDGKAFVWNSKNGSLSKELKWN  200 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~d~~v~lwd~~~~~~~~~~~~~  200 (297)
                      ...|-|.+.-++.++.+..+..||-. ++....+. .+.....++|.-++..++ .+-..+.+.+||+.+... ..+...
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~g  115 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESG  115 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhcc
Confidence            55678877668888889899999943 33333332 344566788887776655 445678999999864321 222211


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEE
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVG  278 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~  278 (297)
                      ......         -+.|++....++.        |...+.+.+++-.+.+.+.....|.. +.+++|.+.+..+..+
T Consensus       116 g~~s~s---------ll~wsKg~~el~i--------g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  116 GTSSKS---------LLAWSKGTPELVI--------GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             CcchHH---------HHhhccCCccccc--------cccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            100000         1446666666665        44588999999887665555553544 9999999876655543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.14  E-value=27  Score=30.29  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-C----e--ee-EEecc----ccCCeeEEEEccCCCEEEEEe
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-M----K--PL-LHIEA----HSKEIDDVDFSISGEQIVSIA  178 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~----~--~~-~~~~~----~~~~v~~~~~sp~~~~l~s~~  178 (297)
                      ....+.+++.++| ++++ ......++.|... +    +  .+ ..+..    +......+.|.|||.+.++-+
T Consensus        71 l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        71 LSMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CCCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3445789999998 4444 4443333445431 1    2  11 12322    234578899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1900|consensus

Probab=83.44  E-value=15  Score=36.70  Aligned_cols=155  Identities=12%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             EEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE--------ccCCCEEEEEeCCCcEEEEEcCCCc
Q psy3337         122 VVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF--------SISGEQIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       122 ~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--------sp~~~~l~s~~~d~~v~lwd~~~~~  192 (297)
                      .+-+-|. ++.-+  +.|+.+.+|+.+++.....+.+-...|..+..        .|.=++++.-..--.|.++-+.-.+
T Consensus        83 ~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            4444443 33333  35888999999987767777666666666653        2333444444444556666543211


Q ss_pred             eee---eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC--CC---Cc-e----------
Q psy3337         193 LSK---ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV--DS---GR-L----------  253 (297)
Q Consensus       193 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~--~~---~~-~----------  253 (297)
                      ...   .+..+-    ........+.++....+|+.+++..         |+.|+=.-.  ..   ++ +          
T Consensus       161 ~~~~~~~f~~~~----~i~~dg~~V~~I~~t~nGRIF~~G~---------dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~l  227 (1311)
T KOG1900|consen  161 FTGELSIFNTSF----KISVDGVSVNCITYTENGRIFFAGR---------DGNLYELVYQAEDGWFGSRCRKICLTKSVL  227 (1311)
T ss_pred             ccCcccccccce----eeecCCceEEEEEeccCCcEEEeec---------CCCEEEEEEeccCchhhcccccccCchhHH
Confidence            110   010000    1111122334466677888777633         343322111  11   11 0          


Q ss_pred             ------EEEec-cC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         254 ------RLARE-MK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       254 ------~~~~~-~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                            +..+. .+ ++|..+.+...-..+.+-+. .|+|.+||+..
T Consensus       228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lse-k~~v~~Y~i~~  273 (1311)
T KOG1900|consen  228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSE-KGTVSAYDIGG  273 (1311)
T ss_pred             HHhhhhhhcCCCCCCCcceeeEeccccceeeeecc-CceEEEEEccC
Confidence                  11122 22 34999999888888899998 99999999865

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=83.07  E-value=11  Score=25.00  Aligned_cols=51  Identities=16%  Similarity=0.248  Sum_probs=34.6

Q ss_pred             CCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      -+.|..||...  ......+-.....+.++|++++|.+++...+.|++|+.+.
T Consensus        35 ~~~Vvyyd~~~--~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   35 WGNVVYYDGKE--VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CceEEEEeCCE--eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            35566666543  2222333333688999999999988876588999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=82.97  E-value=33  Score=30.39  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         263 LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       263 v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      |.+++..+..+.|++.+. +|.|.+|++..
T Consensus       192 I~~v~~d~~r~~ly~l~~-~~~Iq~w~l~~  220 (422)
T PF08801_consen  192 IVQVAVDPSRRLLYTLTS-DGSIQVWDLGP  220 (422)
T ss_dssp             EEEEEEETTTTEEEEEES-SE-EEEEEE-S
T ss_pred             eeeEEecCCcCEEEEEeC-CCcEEEEEEeC
Confidence            999999998899999999 99999999963

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG4460|consensus

Probab=82.75  E-value=22  Score=32.14  Aligned_cols=76  Identities=14%  Similarity=0.103  Sum_probs=51.4

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeC---------CCCeeeE---Ee--------ccccCCeeEEEEccCC---CEEE
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSF---------PKMKPLL---HI--------EAHSKEIDDVDFSISG---EQIV  175 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~---------~~~~~~~---~~--------~~~~~~v~~~~~sp~~---~~l~  175 (297)
                      .|.-+..++.|..++-.|.+|.+.++=.         +.++.+.   ++        ....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4667788999999998889987665531         2343221   11        1112246788999965   5777


Q ss_pred             EEeCCCcEEEEEcCCCcee
Q psy3337         176 SIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       176 s~~~d~~v~lwd~~~~~~~  194 (297)
                      .-+.|..+++||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7788999999999765544

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=82.67  E-value=28  Score=29.31  Aligned_cols=120  Identities=15%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             eeEEEEccCCCEEEEE------------------eCCCcEEEEEcCCCceeeeeeccC--CCC---------------ce
Q psy3337         162 IDDVDFSISGEQIVSI------------------AKDGKAFVWNSKNGSLSKELKWNT--PDN---------------IK  206 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~------------------~~d~~v~lwd~~~~~~~~~~~~~~--~~~---------------~~  206 (297)
                      ...+.+.++|+.|++.                  -.|+.+.-.|+.+++.+.......  +..               ..
T Consensus        59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~  138 (299)
T PF14269_consen   59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS  138 (299)
T ss_pred             ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence            4455666777766622                  124456666777888776654321  000               00


Q ss_pred             EEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC----e--EEEEEcCCCCEEEEEec
Q psy3337         207 YLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES----L--SALAVRDDGRFVAVGTM  280 (297)
Q Consensus       207 ~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~----v--~~~~~s~dg~~l~~~~~  280 (297)
                      ..+....+++|...++|.+|+++-.        -..|.+.|..+|+.+-.+.+...    +  ...++-.|-+++-.+..
T Consensus       139 ~~~D~~HiNsV~~~~~G~yLiS~R~--------~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~  210 (299)
T PF14269_consen  139 FPWDYFHINSVDKDDDGDYLISSRN--------TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESND  210 (299)
T ss_pred             CCCCccEeeeeeecCCccEEEEecc--------cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCC
Confidence            1111223456777888999988655        78999999999999888876521    1  12334344455545555


Q ss_pred             CCCeEEEEEe
Q psy3337         281 FTGSVFVYIA  290 (297)
Q Consensus       281 ~dg~i~vwd~  290 (297)
                       ++.|.|||=
T Consensus       211 -~~~IslFDN  219 (299)
T PF14269_consen  211 -DGTISLFDN  219 (299)
T ss_pred             -CCEEEEEcC
Confidence             778888875

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.34  E-value=20  Score=27.34  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCC------CEEEEEecCCCeEEEEEeCC
Q psy3337         262 SLSALAVRDDG------RFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       262 ~v~~~~~s~dg------~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .+.+++|||-|      -.|++-+. ++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs-~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTS-NGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcC-CCeEEEEecCC
Confidence            48999999943      36788888 99999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=81.29  E-value=33  Score=29.28  Aligned_cols=31  Identities=29%  Similarity=0.558  Sum_probs=24.0

Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      ..+.|+|.|++++|++ ...|.|++++ ..+..
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~   33 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL   33 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence            3578999999987765 5699999999 44443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=81.13  E-value=49  Score=31.12  Aligned_cols=151  Identities=10%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe--eeEEec-cccCCeeEEEEcc------CCCEEEEEeC-C---CcE
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK--PLLHIE-AHSKEIDDVDFSI------SGEQIVSIAK-D---GKA  183 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~~~v~~~~~sp------~~~~l~s~~~-d---~~v  183 (297)
                      .+.|..+.|.++++.++....+|.|.+||...+.  .+..+. .+...+.--.|-+      ...++++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5667899999999999999999999999993222  111221 1222111113322      2334444443 2   235


Q ss_pred             EEEEcC-CCceeeeee---cc--CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe
Q psy3337         184 FVWNSK-NGSLSKELK---WN--TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR  257 (297)
Q Consensus       184 ~lwd~~-~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  257 (297)
                      +++.+. ....+..+.   .+  ......          +++. +|. |+...         ++.|.+|++...+....+
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~----------f~Y~-~G~-LY~l~---------~~~i~~ysip~f~~~~tI  267 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSK----------FCYQ-FGK-LYQLS---------KKTISSYSIPNFQIQKTI  267 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccce----------EEEe-CCE-EEEEe---------CCEEEEEEcCCceEEEEE
Confidence            677761 222333332   11  111111          2222 333 33322         689999999987766665


Q ss_pred             ccC-------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         258 EMK-------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       258 ~~~-------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      ...       ..+.++. .|....++.+.  ++.|++.|+.
T Consensus       268 ~l~~ii~~~~~~~vSl~-~~s~nRvLLs~--~nkIyLld~~  305 (670)
T PF10395_consen  268 SLPSIIDKESDDLVSLK-PPSPNRVLLSV--NNKIYLLDLK  305 (670)
T ss_pred             EechhhccccccceEee-cCCCCeEEEEc--CCEEEEEeeh
Confidence            443       1233333 23444444444  5789999874

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>smart00564 PQQ beta-propeller repeat

Probab=80.79  E-value=3.4  Score=21.27  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=18.4

Q ss_pred             EEEEEecCCCeEEEEEeCCceec
Q psy3337         274 FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       274 ~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+++++. +|.+..+|..+|+.+
T Consensus         8 ~v~~~~~-~g~l~a~d~~~G~~~   29 (33)
T smart00564        8 TVYVGST-DGTLYALDAKTGEIL   29 (33)
T ss_pred             EEEEEcC-CCEEEEEEcccCcEE
Confidence            5777788 999999999998764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-04
2h9l_A	329	Wdr5delta23 Length = 329		2e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-04

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID 163
           K +   Q    G       V LS +G   ++G  DG LRLW             H+K++ 
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL 476
Query: 164 DVDFSISGEQIVSIAKDGKAFVWNS 188
            V FS+   QIVS ++D    +WN+
Sbjct: 477 SVAFSLDNRQIVSASRDRTIKLWNT 501

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
           R V  S +G  + TG  D  +R+W     K ++ ++ H ++I  +D+  SG+++VS + D
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 181 GKAFVWNSKNGSLSKEL 197
               +W+ + G  S  L
Sbjct: 187 RTVRIWDLRTGQCSLTL 203

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 122 VVRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
            VR S + D  ++V+GG D  +++W     + +  ++ H+  +  V  S  G    S  K
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDK 216
Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN 231
           DG A +W+   G    E+    P N +  F   RY +   + K  R+F L N
Sbjct: 217 DGVARLWDLTKGEALSEMAAGAPIN-QICFSPNRYWMCAATEKGIRIFDLEN 267

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 183 SGQCLKTL 190

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 197 SGQCLKTL 204

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 183 SGQCLKTL 190

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 202 SGQCLKTL 209

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 204 SGQCLKTL 211

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 185 SGQCLKTL 192

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 180 SGQCLKTL 187

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 186 SGQCLKTL 193

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 183 SGQCLKTL 190

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 181 SGQCLKTL 188

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 186 SGQCLKTL 193

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 180 SGQCLKTL 187

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 176 SGQCLKTL 183

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 186 SGQCLKTL 193

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
           +L+V+G  D  +R+W     K L  + AHS  +  V F+  G  IVS + DG   +W++ 
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 190 NGSLSKEL 197
           +G   K L
Sbjct: 179 SGQCLKTL 186

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
           Q    G       V +S +G   ++G  DG LRLW             H+K++  V FS 
Sbjct: 79  QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL 229
              QIVS ++D    +WN+         K+   D     +  C    V  SP  S     
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLG-----VCKYTVQDESHSEWVSC----VRFSPNSS----- 184
Query: 230 ANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVG 278
            NP+  +      V+ W++ + +L+         L+ + V  DG   A G
Sbjct: 185 -NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%)
Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
           Q    G       V +S +G   ++G  DG LRLW             H+K++  V FS 
Sbjct: 56  QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 170 SGEQIVSIAKDGKAFVWNS 188
              QIVS ++D    +WN+
Sbjct: 116 DNRQIVSGSRDKTIKLWNT 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.98
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.78
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.73
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.52
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.49
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.47
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.47
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.45
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.42
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.42
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.41
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.27
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.26
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.2
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.18
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.16
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.14
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.13
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.11
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.1
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.09
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.07
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.03
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.01
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.98
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.97
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.97
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.95
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.91
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.88
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.87
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.81
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.65
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.63
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.55
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.52
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.47
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.46
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.45
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.38
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.32
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.22
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.11
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.07
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.04
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.98
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.96
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.89
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.79
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.73
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.65
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.61
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.45
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.44
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.32
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.29
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.28
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.19
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.1
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.09
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.01
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.0
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.98
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.9
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.71
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.68
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.52
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.24
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.81
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.71
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.7
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.65
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.61
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.52
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.4
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.4
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.84
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.79
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.59
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.31
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.61
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.03
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.73
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.53
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.98
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.94
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.69
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.39
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	89.73
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.11
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.79
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	87.5
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	86.26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	83.77
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.63
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	82.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	82.45
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	81.38
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	80.96
3ott_A	758	Two-component system sensor histidine kinase; beta	80.32

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-36  Score=253.78  Aligned_cols=241  Identities=13%  Similarity=0.127  Sum_probs=190.6

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++.+|++|+.|+.++||++..............+           -.........                  
T Consensus        17 ~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~------------------   67 (304)
T 2ynn_A           17 KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-----------VRAGKFIARK------------------   67 (304)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------EEEEEEEGGG------------------
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCc-----------EEEEEEeCCC------------------
Confidence            56679999999999999999999998653322100000000           0000000000                  


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC-eeeEEecccc
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM-KPLLHIEAHS  159 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~  159 (297)
                            -+..+++.|++|++ ++.+++.+..+. +|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|.
T Consensus        68 ------~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~  140 (304)
T 2ynn_A           68 ------NWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (304)
T ss_dssp             ------TEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred             ------CEEEEECCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence                  01557889999999 999999999998 99999999999999999999999999999999876 4567889999


Q ss_pred             CCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeC--CCCeEEEEeccCcccc
Q psy3337         160 KEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDS--PKRSRLFTLANPLAQN  236 (297)
Q Consensus       160 ~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~l~~~~~~~~~~  236 (297)
                      ..|.+++|+| ++.+|++++.|++|++||++++.....+..+...         .+..+.++  +++.+|++        
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~s--------  203 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER---------GVNYVDYYPLPDKPYMIT--------  203 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT---------CEEEEEECCSTTCCEEEE--------
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcC---------cEEEEEEEEcCCCCEEEE--------
Confidence            9999999999 6789999999999999999887766555433211         11224455  47788888        


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |+.|+.|++||+++++++..+.+|.. |.+++|+|++.+|++|+. ||+|++||+.+++.+
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCCEE
T ss_pred             EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCCcee
Confidence            45599999999999999999999877 999999999999999999 999999999988764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.6e-36  Score=256.21  Aligned_cols=190  Identities=14%  Similarity=0.193  Sum_probs=159.7

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEe---cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVF---AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  165 (297)
                      ..+++.|++|+| ++.+++.+..+.   .+|...|++++|+|+|++|++|+.|++|++||+++++++..+.+|...|.++
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~  175 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV  175 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence            347889999999 898887654332   3899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCC-eEEEEeccCcccccCCCCeE
Q psy3337         166 DFSISGE-QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKR-SRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       166 ~~sp~~~-~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|+|++. +|++++.|++|++||+++++....+..+.+.        ..+..++|+|++ .+|++        |+.|+.|
T Consensus       176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~p~~~~~l~s--------g~~dg~v  239 (344)
T 4gqb_B          176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG--------YLPTSLAWHPQQSEVFVF--------GDENGTV  239 (344)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----C--------CCEEEEEECSSCTTEEEE--------EETTSEE
T ss_pred             EecCCCCCceeeeccccccccccccccceeeeeecceee--------ccceeeeecCCCCcceEE--------eccCCcE
Confidence            9999874 7899999999999999999888777543321        123347788854 56666        5569999


Q ss_pred             EEEeCCCCceEEEeccCCC-eEEEEEcCCC-CEEEEEecCCCeEEEEEeCCceec
Q psy3337         244 QQWDVDSGRLRLAREMKES-LSALAVRDDG-RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++||+++++++..+.+|.. |++++|+|++ ++|++|+. |++|+|||+.+++.+
T Consensus       240 ~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~-D~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE-DCSLAVLDSSLSELF  293 (344)
T ss_dssp             EEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTCCEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCcEE
Confidence            9999999999999999877 9999999998 57999999 999999999988764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=251.08  Aligned_cols=235  Identities=12%  Similarity=0.134  Sum_probs=193.6

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.+++++.++++++.|+.++||++...............           -....                       
T Consensus        84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-----------~~~~~-----------------------  129 (321)
T 3ow8_A           84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-----------AWTLA-----------------------  129 (321)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-----------CCCEE-----------------------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-----------EEEEE-----------------------
Confidence            34557888899999999999999998654322100000000           00000                       


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                       ..+..-...+++.|+.+++ ++.+++....+. .|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|..
T Consensus       130 -~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~  207 (321)
T 3ow8_A          130 -FSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM  207 (321)
T ss_dssp             -ECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             -ECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC
Confidence             0000111457888999999 999999888888 8999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|.+++|+|++++|++++.|++|++||++++..+..+..|..          .+..++|+|++.+|++++        .|
T Consensus       208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----------~v~~~~~sp~~~~l~s~s--------~D  269 (321)
T 3ow8_A          208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS----------WVLNVAFCPDDTHFVSSS--------SD  269 (321)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS----------CEEEEEECTTSSEEEEEE--------TT
T ss_pred             ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC----------ceEEEEECCCCCEEEEEe--------CC
Confidence            999999999999999999999999999999988888877752          233588999999999854        49


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      +.|++||+.+++++..+..|.. |.+++|+|+|.+|++++. ||.|++||+.
T Consensus       270 ~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~-d~~i~vwd~p  320 (321)
T 3ow8_A          270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD-DQEIHIYDCP  320 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TCCEEEEECC
T ss_pred             CcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEeCC
Confidence            9999999999999999988876 999999999999999999 9999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.9e-36  Score=254.15  Aligned_cols=238  Identities=15%  Similarity=0.146  Sum_probs=189.7

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      .|+.|++++++|+++|.|+.+++|++......... .       ....++.......                     . 
T Consensus       101 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~-------~~~~~h~~~v~~~---------------------~-  150 (340)
T 1got_B          101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV-S-------RELAGHTGYLSCC---------------------R-  150 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE-E-------EEEECCSSCEEEE---------------------E-
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECccCCCccee-E-------EEecCCCccEEEE---------------------E-
Confidence            35568999999999999999999997542110000 0       0000000000000                     0 


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      ...+.  ...+++.|++|++ ++.+++.+..+. +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|..
T Consensus       151 ~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~  227 (340)
T 1got_B          151 FLDDN--QIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES  227 (340)
T ss_dssp             EEETT--EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred             ECCCC--cEEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC
Confidence            00000  0346788999999 999999988888 9999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|.+++|+|++++|++++.|++|++||+++++.+..+..+...        ..+..++|+|++.+|++        |+.|
T Consensus       228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~~--------g~~d  291 (340)
T 1got_B          228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII--------CGITSVSFSKSGRLLLA--------GYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC--------SCEEEEEECTTSSEEEE--------EETT
T ss_pred             CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc--------cceEEEEECCCCCEEEE--------ECCC
Confidence            9999999999999999999999999999988877666432211        12445889999999999        4559


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      +.|++||+.+++.+..+.+|.. |.+++|+|+|.+|++|+. |+.|+|||
T Consensus       292 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-D~~i~iWd  340 (340)
T 1got_B          292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSCEEEEC
T ss_pred             CeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC-CccEEecC
Confidence            9999999999999999999877 999999999999999999 99999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=249.70  Aligned_cols=187  Identities=17%  Similarity=0.197  Sum_probs=171.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|++|++ ++.+++.+..+. .|...+.+++|+|++++|++|+.|+.|++||+++++....+..|...|.+++|+
T Consensus        95 l~s~s~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s  173 (321)
T 3ow8_A           95 AASSSLDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS  173 (321)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC
T ss_pred             EEEEeCCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC
Confidence            457889999999 999999998888 888889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |++++|++++.|+.|++||+++++.+..+..|..          .+..++|+|++.+|++        |+.|+.|++||+
T Consensus       174 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~----------~v~~l~~spd~~~l~s--------~s~dg~i~iwd~  235 (321)
T 3ow8_A          174 PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM----------PIRSLTFSPDSQLLVT--------ASDDGYIKIYDV  235 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS----------CCCEEEECTTSCEEEE--------ECTTSCEEEEET
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC----------ceeEEEEcCCCCEEEE--------EcCCCeEEEEEC
Confidence            9999999999999999999999999888877642          2345789999999998        455999999999


Q ss_pred             CCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++++.+..+.+|.. |.+++|+|++.+|++++. |+.|++||+.+++++
T Consensus       236 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTCV  283 (321)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEE
T ss_pred             CCcceeEEEcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCEEE
Confidence            99999999998887 999999999999999999 999999999988765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.3e-36  Score=259.98  Aligned_cols=239  Identities=14%  Similarity=0.203  Sum_probs=196.3

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhccc-ccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRK-EKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|+.|++++.+|++|+.|+.++||++.......            ..+++.... ...                      
T Consensus       112 ~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~------------~l~~h~~~V~~v~----------------------  157 (410)
T 1vyh_C          112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFER------------TLKGHTDSVQDIS----------------------  157 (410)
T ss_dssp             EEEEECSSSSEEEEEESSSCEEEEETTTCCCCE------------EECCCSSCEEEEE----------------------
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------EEeccCCcEEEEE----------------------
Confidence            577799999999999999999999976432110            000000000 000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                        ..+..-+..+++.|++|++ ++.+++++..+. +|...|.+++|+|++++|++|+.|++|++||++++.++..+.+|.
T Consensus       158 --~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~  234 (410)
T 1vyh_C          158 --FDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR  234 (410)
T ss_dssp             --ECTTSSEEEEEETTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             --EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Confidence              0001112568899999999 899999988888 999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC-----------------
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK-----------------  222 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----------------  222 (297)
                      ..|.++.|+|++.+|++++.|++|++||+++++....+..|...          +..++|+|+                 
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~~~~~~~~~~~~~~  304 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV----------VECISWAPESSYSSISEATGSETKKS  304 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----------EEEEEECCSCGGGGGGGCCSCC----
T ss_pred             ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce----------EEEEEEcCcccccchhhhcccccccc
Confidence            99999999999999999999999999999999888888776522          234667775                 


Q ss_pred             ---CeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         223 ---RSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       223 ---~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                         +.+|++        |+.|+.|++||+++++++..+.+|.. |.+++|+|+|++|++|+. ||.|++||+.+++++
T Consensus       305 ~~~g~~l~s--------gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~i~vwd~~~~~~~  373 (410)
T 1vyh_C          305 GKPGPFLLS--------GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCM  373 (410)
T ss_dssp             ---CCEEEE--------EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCC
T ss_pred             CCCCCEEEE--------EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceE
Confidence               456666        66699999999999999999998887 999999999999999999 999999999887654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-34  Score=247.62  Aligned_cols=239  Identities=17%  Similarity=0.186  Sum_probs=189.2

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      .++.|+++|.+|+++|.|+.|++|++.........               ...+..                ..+.....
T Consensus       110 ~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~---------------~~~~~~----------------~~h~~~v~  158 (354)
T 2pbi_B          110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA---------------AKKKSV----------------AMHTNYLS  158 (354)
T ss_dssp             CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG---------------GGCEEE----------------EECSSCEE
T ss_pred             EEEEECCCCCEEEEeeCCCCEEEEEEecccccccc---------------ccceee----------------eccCCcEE
Confidence            45668999999999999999999987543111000               000000                00000000


Q ss_pred             --CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          82 --KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        82 --~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                        ...+......+++.|++|++ ++.+++.+..+. +|...|.+++|+|  ++++|++|+.|+.|++||+++++++..+.
T Consensus       159 ~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~  237 (354)
T 2pbi_B          159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE  237 (354)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence              00000111447889999999 999999999998 9999999999988  57899999999999999999999999999


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      +|...|.+++|+|++.+|++++.|++|++||++.+..+..+..+...        ..+..++|+|++.+|++.       
T Consensus       238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~s~~g~~l~~g-------  302 (354)
T 2pbi_B          238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII--------FGASSVDFSLSGRLLFAG-------  302 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC--------SCEEEEEECTTSSEEEEE-------
T ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc--------cceeEEEEeCCCCEEEEE-------
Confidence            99999999999999999999999999999999988776665433211        123357899999999984       


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                       +.|+.|++||+.+++.+..+.+|.. |.+++|+|||++|++|+. |++|+||+
T Consensus       303 -~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~-D~~v~vW~  354 (354)
T 2pbi_B          303 -YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW-DHTLRVWA  354 (354)
T ss_dssp             -ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET-TSEEEEEC
T ss_pred             -ECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC-CCCEEecC
Confidence             4599999999999999999988877 999999999999999999 99999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-34  Score=247.96  Aligned_cols=256  Identities=14%  Similarity=0.194  Sum_probs=193.5

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      .++.|+++|++|++||.|+.|+||++.......      ..        ....+..        .+.+...     ..-.
T Consensus       112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~------~~--------~~~~~~~--------~gh~~~v-----~~~~  164 (380)
T 3iz6_a          112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRD------GN--------MPVSRVL--------TGHKGYA-----SSCQ  164 (380)
T ss_dssp             CCCEECTTSSEEEECCSSSCCEEEECCCCSSCC------CS--------STTCCBC--------CCCSSCC-----CCCB
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECCCCcccc------CC--------ccceeec--------cCCCcce-----EEEE
Confidence            455689999999999999999999986532110      00        0000000        0000000     0000


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEe----cCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCC-CCeeeEE
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVF----AGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFP-KMKPLLH  154 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~----~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~-~~~~~~~  154 (297)
                      ..........+++.|++|++ |+.+++.+..+.    .+|...|.+++|+| ++++|++|+.|+.|++||++ ..+.+..
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            11111222557889999999 899999887762    37999999999987 78999999999999999998 5577889


Q ss_pred             eccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      +.+|...|.+++|+|++++|++++.|++|++||++++..+..+..+......   ....+..++|+|++.+|++      
T Consensus       245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~------  315 (380)
T 3iz6_a          245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN---ELPIVTSVAFSISGRLLFA------  315 (380)
T ss_dssp             ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC---SSCSCSEEEECSSSSEEEE------
T ss_pred             ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc---ccCceEEEEECCCCCEEEE------
Confidence            9999999999999999999999999999999999999888877654311000   0112446889999999998      


Q ss_pred             cccCCCCeEEEEeCCCCceEEEe----ccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAR----EMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~----~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                        |+.|+.|++||+..++.+..+    .+|.. |.+++|+|||.+|++|+. |++|++|++...+.+
T Consensus       316 --g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~iW~~~~~~~i  379 (380)
T 3iz6_a          316 --GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW-DKNLKIWAFSGHRKI  379 (380)
T ss_dssp             --ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT-TSCEEEEECCSSSSC
T ss_pred             --EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC-CCCEEEEecCCCccc
Confidence              555999999999998888776    45666 999999999999999999 999999999877643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-34  Score=252.56  Aligned_cols=235  Identities=14%  Similarity=0.177  Sum_probs=192.3

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.|+||++.......            ...++...-     ..             .     
T Consensus       154 ~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~------------~~~~h~~~V-----~~-------------v-----  198 (410)
T 1vyh_C          154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIR------------TMHGHDHNV-----SS-------------V-----  198 (410)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEE------------CCCCCSSCE-----EE-------------E-----
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE------------EEcCCCCCE-----EE-------------E-----
Confidence            456688999999999999999999985432110            000000000     00             0     


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      ...+..-...+++.|++|++ ++.++.++..+. +|...|.++.|+|++++|++|+.|+.|++||+.+++....+.+|..
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~  277 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH  277 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc
Confidence            00000111457889999999 999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccC--------------------CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeC
Q psy3337         161 EIDDVDFSIS--------------------GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDS  220 (297)
Q Consensus       161 ~v~~~~~sp~--------------------~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  220 (297)
                      .|.+++|+|+                    +.+|++++.|++|++||++++.++..+.+|..          .+..++|+
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~----------~v~~v~~~  347 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN----------WVRGVLFH  347 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS----------CEEEEEEC
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC----------cEEEEEEc
Confidence            9999999996                    67899999999999999999999988887752          23357899


Q ss_pred             CCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         221 PKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       221 ~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      |++.+|++++        .|+.|++||+.+++++..+.+|.. |++++|+|++.+|++|+. ||.|++|+++
T Consensus       348 ~~g~~l~s~s--------~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~-D~~i~vW~~r  410 (410)
T 1vyh_C          348 SGGKFILSCA--------DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWECR  410 (410)
T ss_dssp             SSSSCEEEEE--------TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET-TSEEEEEC--
T ss_pred             CCCCEEEEEe--------CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Confidence            9999999854        599999999999999999998877 999999999999999999 9999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-33  Score=240.81  Aligned_cols=239  Identities=12%  Similarity=0.129  Sum_probs=188.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++|+.|+.++||++...............           -.....                      
T Consensus        59 ~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-----------v~~~~~----------------------  105 (340)
T 1got_B           59 YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW-----------VMTCAY----------------------  105 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSC-----------EEEEEE----------------------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCcc-----------EEEEEE----------------------
Confidence            45668999999999999999999987543211000000000           000000                      


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC----eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD----SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                        .+..-+..+++.|+.+++ ++.++.    ....+. +|...|.++.|++++. +++++.|+.|++||+++++.+..+.
T Consensus       106 --s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~  181 (340)
T 1got_B          106 --APSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             --CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             --CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc
Confidence              000112457888999999 776653    344555 9999999999999875 8899999999999999999999999


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      +|...|.+++|+|++++|++++.|++|++||++++..+..+..|..          .+..++|+|++.+|+++       
T Consensus       182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~----------~v~~v~~~p~~~~l~s~-------  244 (340)
T 1got_B          182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES----------DINAICFFPNGNAFATG-------  244 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS----------CEEEEEECTTSSEEEEE-------
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC----------CEEEEEEcCCCCEEEEE-------
Confidence            9999999999999999999999999999999999998888877652          23458899999999985       


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       +.|+.|++||+++++.+..+..+.   .|.+++|+|+|++|++|+. ||.|++||+.+++.+
T Consensus       245 -s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~  305 (340)
T 1got_B          245 -SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRA  305 (340)
T ss_dssp             -ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEE
T ss_pred             -cCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcccCcEe
Confidence             459999999999988887776543   4999999999999999999 999999999887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.4e-34  Score=241.90  Aligned_cols=184  Identities=12%  Similarity=0.040  Sum_probs=154.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEec--cccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIE--AHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~  165 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|++++|+|++ .+|++|+.|++|++||+++++....+.  .|...+.++
T Consensus       142 l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  220 (344)
T 4gqb_B          142 AVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSL  220 (344)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceee
Confidence            557899999999 999999999998 999999999999988 578999999999999999998887764  455679999


Q ss_pred             EEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCCCeE
Q psy3337         166 DFSIS-GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       166 ~~sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|+|+ +++|++++.|++|++||+++++++..+..|..          .+..++|+|++. +|++        |+.|+.|
T Consensus       221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~----------~v~~v~fsp~g~~~las--------gs~D~~i  282 (344)
T 4gqb_B          221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ----------CVTGLVFSPHSVPFLAS--------LSEDCSL  282 (344)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS----------CEEEEEECSSSSCCEEE--------EETTSCE
T ss_pred             eecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC----------CEEEEEEccCCCeEEEE--------EeCCCeE
Confidence            99994 57889999999999999999999999888752          234588999984 6777        5559999


Q ss_pred             EEEeCCCCceEEEeccCCC-eEEEEEcCCCC-EEEEEecCCCeEEEEEeCCce
Q psy3337         244 QQWDVDSGRLRLAREMKES-LSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++||+.+++++. +.+|.. |++++|+|++. +|++++. |++|++|++.+..
T Consensus       283 ~vwd~~~~~~~~-~~~H~~~V~~v~~sp~~~~llas~s~-D~~v~~w~v~~~~  333 (344)
T 4gqb_B          283 AVLDSSLSELFR-SQAHRDFVRDATWSPLNHSLLTTVGW-DHQVVHHVVPTEP  333 (344)
T ss_dssp             EEECTTCCEEEE-ECCCSSCEEEEEECSSSTTEEEEEET-TSCEEEEECCC--
T ss_pred             EEEECCCCcEEE-EcCCCCCEEEEEEeCCCCeEEEEEcC-CCeEEEEECCCCC
Confidence            999999888664 566666 99999999986 5678999 9999999997643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.6e-33  Score=238.70  Aligned_cols=241  Identities=13%  Similarity=0.129  Sum_probs=189.0

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|+.|++++++|++|+.|+.++||+............ ...          .-....                      
T Consensus        67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~----------~v~~~~----------------------  113 (354)
T 2pbi_B           67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCT----------WVMACA----------------------  113 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSS----------CCCEEE----------------------
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCC----------CEEEEE----------------------
Confidence            35777999999999999999999998643221100000 000          000000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCC------CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTF------DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL  153 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~  153 (297)
                        ..+...+..+++.|+.+++ ++...      .....+. +|...|.+++|+|++..|++++.|++|++||+++++.+.
T Consensus       114 --~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~  190 (354)
T 2pbi_B          114 --YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ  190 (354)
T ss_dssp             --ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             --ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Confidence              0001112457888999999 65433      2344555 899999999999999999999999999999999999999


Q ss_pred             EeccccCCeeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         154 HIEAHSKEIDDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       154 ~~~~~~~~v~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      .+.+|...|.+++|+|  ++++|++++.|++|++||+++++.+..+..|..          .+..++|+|++.+|++++ 
T Consensus       191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~----------~v~~v~~~p~~~~l~s~s-  259 (354)
T 2pbi_B          191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES----------DVNSVRYYPSGDAFASGS-  259 (354)
T ss_dssp             EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS----------CEEEEEECTTSSEEEEEE-
T ss_pred             EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC----------CeEEEEEeCCCCEEEEEe-
Confidence            9999999999999988  578999999999999999999999888877652          234588999999999854 


Q ss_pred             CcccccCCCCeEEEEeCCCCceEEEeccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         232 PLAQNKRGISYVQQWDVDSGRLRLAREMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       232 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                             .|+.|++||++.++.+..+..+.   .+.+++|+|+|++|++|+. |+.|++||+.+++.+
T Consensus       260 -------~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~  319 (354)
T 2pbi_B          260 -------DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRV  319 (354)
T ss_dssp             -------TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCSEE
T ss_pred             -------CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC-CCcEEEEECCCCceE
Confidence                   59999999999988877776543   3899999999999999999 999999999887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.2e-34  Score=245.52  Aligned_cols=188  Identities=15%  Similarity=0.230  Sum_probs=153.7

Q ss_pred             CCCCCceEEE-EeeCCCeEEEE---ecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTV---FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      +++.|++|+| ++.+++.....   ..+|...|++++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|
T Consensus       110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~  189 (357)
T 4g56_B          110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA  189 (357)
T ss_dssp             EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            5678999999 88887654321   1389999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCC-eEEEEeccCcccccCCCCeEEE
Q psy3337         168 SISGE-QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKR-SRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       168 sp~~~-~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +|++. +|++++.|++|++||+++++.+..+..+...        ..+..++|+|++ .+|++        |+.|+.|++
T Consensus       190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~~la~--------g~~d~~i~~  253 (357)
T 4g56_B          190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASD--------TIPTSVTWHPEKDDTFAC--------GDETGNVSL  253 (357)
T ss_dssp             CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCC--------SCEEEEEECTTSTTEEEE--------EESSSCEEE
T ss_pred             ccCCCceeeeeccCCceEEEECCCCceeeeeeecccc--------ccccchhhhhcccceEEE--------eecccceeE
Confidence            99875 7899999999999999998877666543321        123357899985 45666        555999999


Q ss_pred             EeCCCCceEEEeccCCC-eEEEEEcCCC-CEEEEEecCCCeEEEEEeCCceec
Q psy3337         246 WDVDSGRLRLAREMKES-LSALAVRDDG-RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~-v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ||+++++++..+..+.. |++++|+|++ ++|++|+. |++|+|||+.+++.+
T Consensus       254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~-D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVF  305 (357)
T ss_dssp             EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTSCEEE
T ss_pred             EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC-CCEEEEEECCCCcEe
Confidence            99999999999998877 9999999987 57899999 999999999998765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8e-33  Score=232.15  Aligned_cols=243  Identities=15%  Similarity=0.195  Sum_probs=190.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcc-cccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKR-KEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|++++++|++|+.|+.++||++.........            .++... ....                      
T Consensus        27 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~------------~~h~~~v~~~~----------------------   72 (312)
T 4ery_A           27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI------------SGHKLGISDVA----------------------   72 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------------CCCSSCEEEEE----------------------
T ss_pred             EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh------------ccCCCceEEEE----------------------
Confidence            56678999999999999999999987543221000            000000 0000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                        -.+..-+..+++.|+.|++ ++.+++.+..+. +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|.
T Consensus        73 --~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  149 (312)
T 4ery_A           73 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS  149 (312)
T ss_dssp             --ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             --EcCCCCEEEEECCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence              0000112457889999999 999999999988 999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC-------
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP-------  232 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-------  232 (297)
                      ..|.+++|+|++++|++++.|+.|++||+++++.+..+..+...         .+..++|+|++.+|++.+..       
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~d~~i~iwd  220 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---------PVSFVKFSPNGKYILAATLDNTLKLWD  220 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---------CEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---------ceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            99999999999999999999999999999988877665432210         11224455655555544321       


Q ss_pred             ------------------------------cccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEe--
Q psy3337         233 ------------------------------LAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGT--  279 (297)
Q Consensus       233 ------------------------------~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~--  279 (297)
                                                    ++++|+.|+.|++||+.+++.+..+.+|.. |.+++|+|++.+|++++  
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~  300 (312)
T 4ery_A          221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE  300 (312)
T ss_dssp             TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECT
T ss_pred             CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEcc
Confidence                                          356788899999999999999999998877 99999999999999987  


Q ss_pred             cCCCeEEEEEeC
Q psy3337         280 MFTGSVFVYIAF  291 (297)
Q Consensus       280 ~~dg~i~vwd~~  291 (297)
                      . |+.|++|+..
T Consensus       301 ~-d~~i~~W~~d  311 (312)
T 4ery_A          301 N-DKTIKLWKSD  311 (312)
T ss_dssp             T-TCCEEEEECC
T ss_pred             C-CccEEEecCC
Confidence            6 9999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-32  Score=230.06  Aligned_cols=235  Identities=17%  Similarity=0.188  Sum_probs=184.1

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.++||++........            ..++...-..-                       
T Consensus        69 ~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~------------~~~h~~~v~~~-----------------------  113 (319)
T 3frx_A           69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR------------FVGHKSDVMSV-----------------------  113 (319)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEE-----------------------
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE------------EccCCCcEEEE-----------------------
Confidence            4566899999999999999999999865432110            00000000000                       


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecC------CCEEEEEcCCCcEEEEeCCCCeeeEEe
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRN------GDLMVTGGTDGHLRLWSFPKMKPLLHI  155 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------g~~l~s~~~d~~i~iwd~~~~~~~~~~  155 (297)
                      ...+..-+..+++.|++|+++-..++.+..+. +|...|.++.|+|.      +..|++++.|+.|++||+++.+....+
T Consensus       114 ~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  192 (319)
T 3frx_A          114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF  192 (319)
T ss_dssp             EECTTSCEEEEEETTSCEEEEETTSCEEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence            00001112558899999999434567778887 99999999999985      458999999999999999999999999


Q ss_pred             ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         156 EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      .+|...|.+++|+|++++|++++.|++|++||+.+++.+..+..+.           .+..++|+|++..+++..     
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~sp~~~~la~~~-----  256 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-----------EVFSLAFSPNRYWLAAAT-----  256 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-----------CEEEEEECSSSSEEEEEE-----
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-----------cEEEEEEcCCCCEEEEEc-----
Confidence            9999999999999999999999999999999999998888876542           234588999999988754     


Q ss_pred             ccCCCCeEEEEeCCCCceEEEecc--------CC-CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         236 NKRGISYVQQWDVDSGRLRLAREM--------KE-SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~~~~~~~~~--------~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                          +..+++|++..+..+..+..        +. .+.+++|+|||++|++|+. ||.|+|||+.++
T Consensus       257 ----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~-Dg~i~vWd~~t~  318 (319)
T 3frx_A          257 ----ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQVMTA  318 (319)
T ss_dssp             ----TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-TSCEEEEEEEEC
T ss_pred             ----CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-CceEEEEEEeec
Confidence                45699999998777666542        22 3899999999999999999 999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-32  Score=235.35  Aligned_cols=184  Identities=15%  Similarity=0.089  Sum_probs=156.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEe--ccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHI--EAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~  165 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|++++|+|++ .++++++.|+.|++||+++++++..+  ..|...+.++
T Consensus       154 l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          154 AVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV  232 (357)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence            457889999999 999999999888 999999999999987 47899999999999999988876554  4567789999


Q ss_pred             EEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCCCeE
Q psy3337         166 DFSIS-GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       166 ~~sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|+|+ +.+|++++.|+.|++||+++++.+..+..|..          .+..++|+|++. +|++        |+.|+.|
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~----------~v~~l~~sp~~~~~las--------gs~D~~i  294 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ----------NITGLAYSYHSSPFLAS--------ISEDCTV  294 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS----------CEEEEEECSSSSCCEEE--------EETTSCE
T ss_pred             hhhhcccceEEEeecccceeEEECCCCcEeEEEeccce----------eEEEEEEcCCCCCEEEE--------EeCCCEE
Confidence            99997 56889999999999999999998888877642          234578999874 6777        4559999


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcC-CCCEEEEEecCCCeEEEEEeCCc
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRD-DGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ++||+.+++++..+.+...|++++|+| |+.+|++++. ||+|++|++.+.
T Consensus       295 ~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~-Dg~v~iW~~~~~  344 (357)
T 4g56_B          295 AVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW-DHKVLHHHLPSE  344 (357)
T ss_dssp             EEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEET-TSCEEEEECC--
T ss_pred             EEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC-CCeEEEEECCCC
Confidence            999999999887775444599999998 8999999999 999999999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-32  Score=239.98  Aligned_cols=247  Identities=10%  Similarity=0.070  Sum_probs=194.2

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      +..|++++++|++++.|+.+++|++..........            .........                        
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~------------~~~~~~~~~------------------------  104 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK------------RADYTAVDT------------------------  104 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC------------SCCEEEEEE------------------------
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe------------cCCceEEEE------------------------
Confidence            45689999999999999999999987654321000            000000000                        


Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                      .....-+..+++.|+.|++ ++.+++....+. +|...|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...
T Consensus       105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  183 (420)
T 3vl1_A          105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT  183 (420)
T ss_dssp             ECSSSCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred             EecCCCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence            0000112457788999999 888887777666 99999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCC---ceEEEE-----------eeeeeeeeeCCCCeEEE
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDN---IKYLFK-----------RCRYGLVEDSPKRSRLF  227 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~s~~~~~l~  227 (297)
                      |.+++|+|++++|++++.|+.|++||+++++.+..+..+....   ....+.           ...+..++|+|++.+|+
T Consensus       184 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (420)
T 3vl1_A          184 VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI  263 (420)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence            9999999999999999999999999999999988887653111   011111           13345678999999999


Q ss_pred             EeccCcccccCCCCeEEEEeCCCCceEEEecc-CCC-eEEEEEcCCCC-EEEEEecCCCeEEEEEeCCcee
Q psy3337         228 TLANPLAQNKRGISYVQQWDVDSGRLRLAREM-KES-LSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       228 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~-v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +.        +.|+.|++||+++++.+..+.. |.. |.+++|+|++. +|++|+. ||.|++||+.+++.
T Consensus       264 ~~--------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          264 AG--------HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE-NGMLAQWDLRSPEC  325 (420)
T ss_dssp             EE--------ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTCTTS
T ss_pred             EE--------cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC-CCeEEEEEcCCCcC
Confidence            84        4599999999999887777654 444 99999999999 9999999 99999999988753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.5e-32  Score=226.93  Aligned_cols=184  Identities=15%  Similarity=0.251  Sum_probs=162.7

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|.+++|+|++++|++|+.|++|++||++ ++.+..+.+|...|.++.|+
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~  157 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVV  157 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEEC
T ss_pred             EEEEeCCCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEc
Confidence            557899999999 999999999998 999999999999999999999999999999986 56678888999999999999


Q ss_pred             cC------CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         169 IS------GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       169 p~------~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      |.      +..|++++.|+.|++||+++++....+..|..          .+..++|+|++.+|++++        .|+.
T Consensus       158 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~----------~v~~~~~sp~g~~l~s~~--------~dg~  219 (319)
T 3frx_A          158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS----------NINTLTASPDGTLIASAG--------KDGE  219 (319)
T ss_dssp             CC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS----------CEEEEEECTTSSEEEEEE--------TTCE
T ss_pred             cCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC----------cEEEEEEcCCCCEEEEEe--------CCCe
Confidence            85      45899999999999999999888888877642          234588999999999954        5999


Q ss_pred             EEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         243 VQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |++||+.+++++..+..+..|.+++|+|++.+|++++.  +.+++|++.....
T Consensus       220 i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~--~~i~v~~~~~~~~  270 (319)
T 3frx_A          220 IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA--TGIKVFSLDPQYL  270 (319)
T ss_dssp             EEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET--TEEEEEEETTEEE
T ss_pred             EEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC--CCcEEEEeCcCee
Confidence            99999999999999988888999999999999999884  5699999876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6e-32  Score=234.28  Aligned_cols=193  Identities=16%  Similarity=0.192  Sum_probs=159.5

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|++++|+|++++|++++.|++|++||+++++....+. +...+.+++|+
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~  215 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS  215 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence            457889999999 999998888888 999999999999999999999999999999999998877776 56679999999


Q ss_pred             c-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 I-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      | ++++|++++.|+.|++||++++..+..+......   .......+..++|+|++.+|+++        +.|+.|++||
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~g~~l~s~--------s~d~~v~~wd  284 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES---GTGHKDSVYSVVFTRDGQSVVSG--------SLDRSVKLWN  284 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEEEEEECTTSSEEEEE--------ETTSEEEEEE
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC---CCCCCCCEEEEEECCCCCEEEEE--------eCCCEEEEEE
Confidence            9 8999999999999999999998877766321100   00011234568899999999984        4599999999


Q ss_pred             CCCC------------ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         248 VDSG------------RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       248 ~~~~------------~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +++.            .+...+.+|.. |.+++|+|++.+|++|+. |+.|++||+.+++++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPL  345 (393)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEE
T ss_pred             CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEE
Confidence            9753            34556777776 999999999999999999 999999999988754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.7e-32  Score=224.90  Aligned_cols=239  Identities=12%  Similarity=0.093  Sum_probs=175.4

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|+++|++||+|+.|+.++||++........          ....++......-.                     .
T Consensus        13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~----------~~l~gH~~~V~~v~---------------------~   61 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI----------DTLTGHEGPVWRVD---------------------W   61 (297)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC----------EEECCCSSCEEEEE---------------------E
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE----------EEEccccCCeEEEE---------------------e
Confidence            4667999999999999999999999853210000          00000000000000                     0


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCe--eeEE
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMK--PLLH  154 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~--~~~~  154 (297)
                      ......-+..+++.|++|++ ++.+++  .+..+. +|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....
T Consensus        62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  140 (297)
T 2pm7_B           62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII  140 (297)
T ss_dssp             CCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred             cCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee
Confidence            00000112568899999999 888774  445555 89999999999997  8999999999999999998753  2456


Q ss_pred             eccccCCeeEEEEccC-------------CCEEEEEeCCCcEEEEEcCCCc----eeeeeeccCCCCceEEEEeeeeeee
Q psy3337         155 IEAHSKEIDDVDFSIS-------------GEQIVSIAKDGKAFVWNSKNGS----LSKELKWNTPDNIKYLFKRCRYGLV  217 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~-------------~~~l~s~~~d~~v~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  217 (297)
                      +.+|...|.+++|+|+             +++|++++.|++|++||++++.    ....+.+|.          ..+..+
T Consensus       141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~----------~~V~~v  210 (297)
T 2pm7_B          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS----------DWVRDV  210 (297)
T ss_dssp             EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS----------SCEEEE
T ss_pred             eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC----------CceEEE
Confidence            7889999999999997             5799999999999999998765    445565554          234458


Q ss_pred             eeCCCC---eEEEEeccCcccccCCCCeEEEEeCCCCc---eEEEe--ccCCC-eEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         218 EDSPKR---SRLFTLANPLAQNKRGISYVQQWDVDSGR---LRLAR--EMKES-LSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       218 ~~s~~~---~~l~~~~~~~~~~g~~d~~i~~wd~~~~~---~~~~~--~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                      +|+|++   .+|+++        +.|++|++||+....   ....+  ..+.. |.+++|+|+|++|++++. |+.|+||
T Consensus       211 ~~sp~~~~~~~las~--------s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-D~~v~lw  281 (297)
T 2pm7_B          211 AWSPTVLLRSYMASV--------SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLW  281 (297)
T ss_dssp             EECCCCSSSEEEEEE--------ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-TSCEEEE
T ss_pred             EECCCCCCceEEEEE--------ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-CCcEEEE
Confidence            899985   788884        459999999998743   22233  33444 999999999999999999 9999999


Q ss_pred             EeC
Q psy3337         289 IAF  291 (297)
Q Consensus       289 d~~  291 (297)
                      +..
T Consensus       282 ~~~  284 (297)
T 2pm7_B          282 KEN  284 (297)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-32  Score=248.98  Aligned_cols=240  Identities=13%  Similarity=0.181  Sum_probs=179.6

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhc-ccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRK-RKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|+.|+++|++||+|+.|+.++||++...........          .++.. -....                      
T Consensus        63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~----------~~~~~~v~~v~----------------------  110 (611)
T 1nr0_A           63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI----------PVFSGPVKDIS----------------------  110 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE----------ECSSSCEEEEE----------------------
T ss_pred             EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee----------cccCCceEEEE----------------------
Confidence            5677999999999999999999999842110000000          00000 00000                      


Q ss_pred             CCCCCCCCcCCCCC-C--CceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          81 DKIEDPPILNSIDS-K--EKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        81 ~~~~~~~~l~~~~~-~--d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                       ...+...+...+. .  ++.|++ ..+++....+. +|...|++++|+|++. .|++|+.|++|++||..+++.+..+.
T Consensus       111 -fs~dg~~l~~~~~~~~~~~~v~~-wd~~~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~  187 (611)
T 1nr0_A          111 -WDSESKRIAAVGEGRERFGHVFL-FDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG  187 (611)
T ss_dssp             -ECTTSCEEEEEECCSSCSEEEEE-TTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC
T ss_pred             -ECCCCCEEEEEECCCCceeEEEE-eeCCCCcceec-CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec
Confidence             0001111122221 1  245666 22566667777 9999999999999986 69999999999999999999999999


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-------ccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK-------WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      +|...|.+++|+|++++|++++.|++|++||+.+++.+..+.       .|.          ..+..++|+|++++|+++
T Consensus       188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~----------~~V~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS----------GSVFGLTWSPDGTKIASA  257 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS----------SCEEEEEECTTSSEEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC----------CCEEEEEECCCCCEEEEE
Confidence            999999999999999999999999999999999998887773       232          234458899999999995


Q ss_pred             ccCcccccCCCCeEEEEeCCCCceEEE-------------------------------------------eccCCC-eEE
Q psy3337         230 ANPLAQNKRGISYVQQWDVDSGRLRLA-------------------------------------------REMKES-LSA  265 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~~~~~~~-------------------------------------------~~~~~~-v~~  265 (297)
                      +.        |++|++||+.+++++..                                           +.+|.. |.+
T Consensus       258 s~--------D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~  329 (611)
T 1nr0_A          258 SA--------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA  329 (611)
T ss_dssp             ET--------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             eC--------CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence            54        89999999887665433                                           345655 999


Q ss_pred             EEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         266 LAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       266 ~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ++|+|||++|++++. |++|++||+.+++.
T Consensus       330 l~~spdg~~l~s~s~-D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          330 LSSSADGKTLFSADA-EGHINSWDISTGIS  358 (611)
T ss_dssp             EEECTTSSEEEEEET-TSCEEEEETTTCCE
T ss_pred             EEEeCCCCEEEEEeC-CCcEEEEECCCCce
Confidence            999999999999999 99999999988754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8e-32  Score=233.50  Aligned_cols=236  Identities=16%  Similarity=0.154  Sum_probs=180.6

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhccc-ccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRK-EKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|+.|+++|++|++|+.|+.++||++........            .+++.... ...-                     
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~h~~~v~~~~~---------------------  173 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI------------LQGHEQDIYSLDY---------------------  173 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEE---------------------
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE------------EccCCCCEEEEEE---------------------
Confidence            3566899999999999999999999865332110            00000000 0000                     


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEe---
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHI---  155 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~---  155 (297)
                        ..+ .-...+++.|++|++ ++.+++....+  .+...+.+++|+| ++++|++|+.|+.|++||+++++.+..+   
T Consensus       174 --~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~  248 (393)
T 1erj_A          174 --FPS-GDKLVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE  248 (393)
T ss_dssp             --CTT-SSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred             --cCC-CCEEEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc
Confidence              000 011457889999999 89998887776  4566799999999 8999999999999999999998877766   


Q ss_pred             ----ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce------------eeeeeccCCCCceEEEEeeeeeeeee
Q psy3337         156 ----EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL------------SKELKWNTPDNIKYLFKRCRYGLVED  219 (297)
Q Consensus       156 ----~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (297)
                          .+|...|.+++|+|++++|++++.|++|++||+++...            ...+.+|.          ..+..++|
T Consensus       249 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~~~~  318 (393)
T 1erj_A          249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK----------DFVLSVAT  318 (393)
T ss_dssp             ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS----------SCEEEEEE
T ss_pred             ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc----------CcEEEEEE
Confidence                57999999999999999999999999999999976432            22232332          22445889


Q ss_pred             CCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcC------CCCEEEEEecCCCeEEEEEeCC
Q psy3337         220 SPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRD------DGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       220 s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~------dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +|++.+|++        |+.|+.|++||+.+++++..+.+|.. |.+++|++      ++.+|++|+. ||+|+||++..
T Consensus       319 ~~~~~~l~s--------gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~-Dg~i~iW~~~~  389 (393)
T 1erj_A          319 TQNDEYILS--------GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG-DCKARIWKYKK  389 (393)
T ss_dssp             CGGGCEEEE--------EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET-TSEEEEEEEEE
T ss_pred             CCCCCEEEE--------EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC-CCcEEECcccc
Confidence            999999998        45599999999999999999999877 99999886      6899999999 99999999976


Q ss_pred             ce
Q psy3337         293 LQ  294 (297)
Q Consensus       293 ~~  294 (297)
                      .+
T Consensus       390 ~~  391 (393)
T 1erj_A          390 IA  391 (393)
T ss_dssp             C-
T ss_pred             cC
Confidence            54

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=226.76  Aligned_cols=238  Identities=12%  Similarity=0.099  Sum_probs=178.7

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcc-cccchhhhhccCCCcccccccCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKR-KEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +..|+++|++||+||.|+.++||++...........  .       +++... ....-                      
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~--~-------~~h~~~v~~~~~----------------------   69 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL--S-------EGHQRTVRKVAW----------------------   69 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE--C-------SSCSSCEEEEEE----------------------
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee--c-------cccCCcEEEEEE----------------------
Confidence            455899999999999999999999865421100000  0       000000 00000                      


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC---eeeEEe
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM---KPLLHI  155 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~  155 (297)
                        .+..-+..+++.|+++++ +..++.  .+..+. +|...|.+++|+|++++|++|+.|+.|++||+.++   ..+..+
T Consensus        70 --sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           70 --SPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             --CTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             --CCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence              000112557889999999 776664  455666 99999999999999999999999999999999765   346678


Q ss_pred             ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce--eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc
Q psy3337         156 EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL--SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL  233 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~  233 (297)
                      .+|...|.+++|+|++.+|++++.|++|++||++++..  ...+..|.          ..+..++|+|++.+|++++   
T Consensus       147 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~----------~~v~~l~~sp~g~~l~s~s---  213 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE----------STVWSLAFDPSGQRLASCS---  213 (345)
T ss_dssp             CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS----------SCEEEEEECTTSSEEEEEE---
T ss_pred             cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC----------CceEEEEECCCCCEEEEEe---
Confidence            89999999999999999999999999999999987753  34555554          2244588999999999954   


Q ss_pred             ccccCCCCeEEEEeCCC---------------CceEEEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         234 AQNKRGISYVQQWDVDS---------------GRLRLAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~---------------~~~~~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                           .|+.|++||...               .+++..+.+ |.. |.+++|+|++..|++++. |+.|++|+....
T Consensus       214 -----~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~~~~  284 (345)
T 3fm0_A          214 -----DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPN  284 (345)
T ss_dssp             -----TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEECTT
T ss_pred             -----CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEeCCC
Confidence                 599999999632               133445554 555 999999999999999999 999999998654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=226.85  Aligned_cols=251  Identities=12%  Similarity=0.073  Sum_probs=175.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhccc-ccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRK-EKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|++++++|++|+.|+.++||++...........          +++...- ...-                     
T Consensus        65 ~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~----------~~h~~~v~~v~~---------------------  113 (345)
T 3fm0_A           65 RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL----------EGHENEVKSVAW---------------------  113 (345)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE----------CCCSSCEEEEEE---------------------
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc----------cCCCCCceEEEE---------------------
Confidence            4566899999999999999999999865421100000          0000000 0000                     


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCe---EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe--eeEE
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDS---VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK--PLLH  154 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~  154 (297)
                         .+..-+..+++.|++|++ ++.++..   +..+. +|...|.+++|+|++++|++|+.|+.|++||+++++  +...
T Consensus       114 ---sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~  189 (345)
T 3fm0_A          114 ---APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT  189 (345)
T ss_dssp             ---CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             ---eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE
Confidence               000112557889999999 8877643   34455 899999999999999999999999999999998775  4578


Q ss_pred             eccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC--CCCceEE----EEeeeeeeeeeCCCCeEEEE
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT--PDNIKYL----FKRCRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~s~~~~~l~~  228 (297)
                      +.+|...|.+++|+|++++|++++.|++|++||.........+....  +......    .....+..++|+|++..|++
T Consensus       190 ~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s  269 (345)
T 3fm0_A          190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT  269 (345)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEE
Confidence            89999999999999999999999999999999974322111100000  0000000    01123556899999999998


Q ss_pred             eccCcccccCCCCeEEEEeCCCCc---------eEEEeccCCC-eEEEEEcCCC-CEEEEEecCCCeEEEEEeCCceec
Q psy3337         229 LANPLAQNKRGISYVQQWDVDSGR---------LRLAREMKES-LSALAVRDDG-RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       229 ~~~~~~~~g~~d~~i~~wd~~~~~---------~~~~~~~~~~-v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++.        |+.|++|+...+.         ......+|.. |.+++|+|++ .+|++|+. ||.|++|++.+.+++
T Consensus       270 ~~~--------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~-Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          270 ACG--------DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD-DGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EET--------TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET-TSCEEEEEECC----
T ss_pred             EeC--------CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC-CCcEEEEEecCCCCc
Confidence            554        9999999987532         1122345666 9999999987 59999999 999999999988764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.6e-32  Score=234.65  Aligned_cols=239  Identities=12%  Similarity=0.134  Sum_probs=183.7

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.++||++........... ...                                  ....-
T Consensus        70 ~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~----------------------------------~v~~~  114 (380)
T 3iz6_a           70 YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCP----------------------------------WVMEC  114 (380)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCT----------------------------------TCCCC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCC----------------------------------CEEEE
Confidence            5677999999999999999999999754332110000 000                                  00000


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC-------eEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeee
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD-------SVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPL  152 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~-------~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~  152 (297)
                      ...+..-+..+++.|+.+++ ++.+..       ....+. +|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+
T Consensus       115 ~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~  193 (380)
T 3iz6_a          115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI  193 (380)
T ss_dssp             EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred             EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence            00001112457889999999 765432       233455 999999999999974 67999999999999999999888


Q ss_pred             EEe-----ccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcC-CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeE
Q psy3337         153 LHI-----EAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSK-NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSR  225 (297)
Q Consensus       153 ~~~-----~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  225 (297)
                      ..+     .+|...|.+++|+| ++++|++++.|++|++||++ .+..+..+.+|..          .+..++|+|++.+
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~----------~v~~v~~~p~~~~  263 (380)
T 3iz6_a          194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG----------DINSVKFFPDGQR  263 (380)
T ss_dssp             EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS----------CCCEEEECTTSSE
T ss_pred             EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC----------CeEEEEEecCCCe
Confidence            777     67899999999987 88999999999999999998 4567777776652          2445889999999


Q ss_pred             EEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC--------CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         226 LFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE--------SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~--------~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |++        |+.|+.|++||+++++++..+..+.        .|.+++|+|+|++|++|+. ||.|++||+.+++.
T Consensus       264 l~s--------~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          264 FGT--------GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEM  332 (380)
T ss_dssp             EEE--------ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETTTCCE
T ss_pred             EEE--------EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECCCCce
Confidence            999        5559999999999999888775431        2899999999999999999 99999999877654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.6e-31  Score=222.92  Aligned_cols=183  Identities=20%  Similarity=0.258  Sum_probs=150.8

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe---ccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI---EAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~  165 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|.+++|+|++++|++++.|+.|++||+.... ...+   ..|...|.++
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeee
Confidence            458889999999 999999999988 999999999999999999999999999999997433 3333   3788999999


Q ss_pred             EEccCC----------CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         166 DFSISG----------EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       166 ~~sp~~----------~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      +|+|++          .+|++++.|+.|++||. ..+....+..|.          ..+..++|+|++++|+++      
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~----------~~v~~~~~s~~g~~l~sg------  231 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE----------SNVNHLSISPNGKYIATG------  231 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS----------SCEEEEEECTTSSEEEEE------
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc----------ccceEEEECCCCCEEEEE------
Confidence            999987          78999999999999994 556666666664          124458899999999994      


Q ss_pred             ccCCCCeEEEEeCCC-CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         236 NKRGISYVQQWDVDS-GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                        +.|+.|++||+.. ......+.....|.+++|+|++.+|+++.  |+.|++||+.+++.
T Consensus       232 --s~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~--d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          232 --GKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT--DQGVKIFNLMTQSK  288 (343)
T ss_dssp             --ETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE--SSCEEEEESSSCCS
T ss_pred             --cCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC--CCCEEEEEeCCCCC
Confidence              4599999999954 44555554445599999999999887665  88899999987653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.7e-31  Score=239.75  Aligned_cols=229  Identities=19%  Similarity=0.232  Sum_probs=183.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      .|+.|++++++|++++.|+.+++|+..........    ..      ...  -+....                      
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~----~~------~~~--v~~~~~----------------------  393 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT----GH------SSS--VRGVAF----------------------  393 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE----CC------SSC--EEEEEE----------------------
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec----CC------CCC--eEEEEE----------------------
Confidence            35568899999999999999999985432221000    00      000  000000                      


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE  161 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  161 (297)
                        .+..-+..+++.|+.|+++-.+++.+..+. +|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...
T Consensus       394 --s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~  469 (577)
T 2ymu_A          394 --SPDGQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  469 (577)
T ss_dssp             --CTTSSCEEEEETTSEEEEECTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSC
T ss_pred             --CCCCCEEEEEeCCCEEEEEeCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCC
Confidence              000111456788999999556788888888 99999999999999999999999999999996 56778889999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      |.+++|+|++++|++++.|++|++||. +++.+..+..|..          .+..++|+|++++|++++        .|+
T Consensus       470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~----------~v~~l~~s~dg~~l~s~~--------~dg  530 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS----------SVRGVAFSPDGQTIASAS--------DDK  530 (577)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS----------CEEEEEECTTSSCEEEEE--------TTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC----------CEEEEEEcCCCCEEEEEE--------CcC
Confidence            999999999999999999999999995 6788888877752          244588999999999854        499


Q ss_pred             eEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         242 YVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      .|++||. +++++..+.+|.. |++++|+|||++|++++. |+.|++||
T Consensus       531 ~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~-D~~i~~Wd  577 (577)
T 2ymu_A          531 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASS-DKTVKLWN  577 (577)
T ss_dssp             EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSCEEEEC
T ss_pred             EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCEEEEeC
Confidence            9999996 5888899999877 999999999999999999 99999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.6e-31  Score=221.94  Aligned_cols=238  Identities=18%  Similarity=0.191  Sum_probs=180.6

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++++.|+.+++|+................           ....                        
T Consensus        90 ~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~------------------------  134 (340)
T 4aow_A           90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD-----------VLSV------------------------  134 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------EEEE------------------------
T ss_pred             EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-----------eeEE------------------------
Confidence            45668999999999999999999988654432100000000           0000                        


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC--CEEEEEcCCCcEEEEeCCCCeeeEEeccc
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG--DLMVTGGTDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                      ......-...+++.|+.+++ +............+|...+.+++|++++  .++++++.|+.|++||+++++.+..+.+|
T Consensus       135 ~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h  214 (340)
T 4aow_A          135 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH  214 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC
Confidence            00000011457788999999 6655444333335899999999999875  57889999999999999999999999999


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ...|++++|+|++++|++++.|+.|++||+++.+.+..+..+.           .+..+.|+|++..++. +        
T Consensus       215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~-~--------  274 (340)
T 4aow_A          215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----------IINALCFSPNRYWLCA-A--------  274 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-----------CEEEEEECSSSSEEEE-E--------
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-----------eEEeeecCCCCceeec-c--------
Confidence            9999999999999999999999999999999998888776553           1234778998865543 2        


Q ss_pred             CCCeEEEEeCCCCceEEEec---------cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         239 GISYVQQWDVDSGRLRLARE---------MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~---------~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .|+.|++||++++..+..+.         .|.. |.+++|+|||++|++|+. ||.|+|||+.+|++
T Consensus       275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT-DNLVRVWQVTIGTR  340 (340)
T ss_dssp             ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET-TSCEEEEEEEC---
T ss_pred             CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC-CCEEEEEeCCCcCC
Confidence            38999999999887766554         3444 999999999999999999 99999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-31  Score=221.52  Aligned_cols=183  Identities=16%  Similarity=0.168  Sum_probs=145.1

Q ss_pred             CCCCCCCceEEE-EeeC-------CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC----CeeeEEecc
Q psy3337          90 NSIDSKEKNLRF-GFKT-------FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK----MKPLLHIEA  157 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~-------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----~~~~~~~~~  157 (297)
                      ..+++.|++|++ +...       .+.+..+. +|...|.+++|+|++++|++|+.|++|++||+..    .+++..+.+
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~  151 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE  151 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence            557889999999 6642       34455666 9999999999999999999999999999999943    256778899


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeccCCCCceEEEEeeeeeeeeeCCC--CeEEEEeccCc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG--SLSKELKWNTPDNIKYLFKRCRYGLVEDSPK--RSRLFTLANPL  233 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~~~  233 (297)
                      |...|.+++|+|++.+|++++.|++|++||+.++  +++..+.+|..          .+..++|+|+  +..|++     
T Consensus       152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~~l~s-----  216 (330)
T 2hes_X          152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG----------TVWSSDFDKTEGVFRLCS-----  216 (330)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----------CEEEEEECCSSSSCEEEE-----
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC----------cEEEEEecCCCCeeEEEE-----
Confidence            9999999999999999999999999999998766  56667766641          2345778998  667877     


Q ss_pred             ccccCCCCeEEEEeCCCC--------ceEEEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         234 AQNKRGISYVQQWDVDSG--------RLRLAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~~--------~~~~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                         |+.|+.|++||+..+        .+...+.. |.. |.+++|++++ +|++++. ||.|++||+.++
T Consensus       217 ---~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~-dg~v~iw~~~~~  281 (330)
T 2hes_X          217 ---GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA-DGVLAVYEEVDG  281 (330)
T ss_dssp             ---EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET-TSCEEEEEEETT
T ss_pred             ---EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC-CCEEEEEEcCCC
Confidence               455999999998764        34455554 555 9999999765 8899999 999999998776

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-31  Score=226.03  Aligned_cols=239  Identities=11%  Similarity=0.016  Sum_probs=174.7

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|+++|++|++|+.|+.++||++..........          .+++........                     .
T Consensus        17 ~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~----------l~gH~~~V~~v~---------------------~   65 (316)
T 3bg1_A           17 HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD----------LRGHEGPVWQVA---------------------W   65 (316)
T ss_dssp             EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE----------EECCSSCEEEEE---------------------E
T ss_pred             EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE----------EcCCCccEEEEE---------------------e
Confidence            567789999999999999999999997532110000          000000000000                     0


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCe---eeE
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMK---PLL  153 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~---~~~  153 (297)
                      ......-+..+++.|++|++ ++.+++  ....+. +|...|.+++|+|+  +.+|++|+.|+.|++||++.+.   ...
T Consensus        66 ~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~  144 (316)
T 3bg1_A           66 AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK  144 (316)
T ss_dssp             CCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred             CCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee
Confidence            00000112568899999999 787764  455565 89999999999998  7899999999999999998653   245


Q ss_pred             EeccccCCeeEEEEccC-----------------CCEEEEEeCCCcEEEEEcCCC---ceeeeeeccCCCCceEEEEeee
Q psy3337         154 HIEAHSKEIDDVDFSIS-----------------GEQIVSIAKDGKAFVWNSKNG---SLSKELKWNTPDNIKYLFKRCR  213 (297)
Q Consensus       154 ~~~~~~~~v~~~~~sp~-----------------~~~l~s~~~d~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~  213 (297)
                      .+.+|...|.+++|+|+                 +.+|++++.|++|++||++..   +.+..+..|.          ..
T Consensus       145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~----------~~  214 (316)
T 3bg1_A          145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS----------DW  214 (316)
T ss_dssp             BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS----------SC
T ss_pred             eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC----------Cc
Confidence            66789999999999997                 468999999999999999755   3555666654          12


Q ss_pred             eeeeeeCCCC----eEEEEeccCcccccCCCCeEEEEeCCCC---c-eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCe
Q psy3337         214 YGLVEDSPKR----SRLFTLANPLAQNKRGISYVQQWDVDSG---R-LRLAREMKES-LSALAVRDDGRFVAVGTMFTGS  284 (297)
Q Consensus       214 ~~~~~~s~~~----~~l~~~~~~~~~~g~~d~~i~~wd~~~~---~-~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~  284 (297)
                      +..++|+|++    .+|+++        +.|++|++||+.+.   + ....+..|.. |.+++|+|+|++|++++. |+.
T Consensus       215 V~~v~~sp~~~~~~~~las~--------s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D~~  285 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASC--------SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG-DNK  285 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEE--------ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES-SSC
T ss_pred             eEEEEecCCCCCCCceEEEE--------cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-CCe
Confidence            4458899986    778884        45999999999762   1 1223344544 999999999999999999 999


Q ss_pred             EEEEEeC
Q psy3337         285 VFVYIAF  291 (297)
Q Consensus       285 i~vwd~~  291 (297)
                      |++|+..
T Consensus       286 v~lw~~~  292 (316)
T 3bg1_A          286 VTLWKES  292 (316)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.8e-30  Score=217.09  Aligned_cols=243  Identities=11%  Similarity=0.097  Sum_probs=185.6

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|..|++++++|++++ |+.+++|++...............    .....  -....                      
T Consensus        54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~----~~~~~--v~~~~----------------------  104 (337)
T 1gxr_A           54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL----NRDNY--IRSCK----------------------  104 (337)
T ss_dssp             CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECS----CTTSB--EEEEE----------------------
T ss_pred             eEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccccc----CCCCc--EEEEE----------------------
Confidence            35667889999999888 999999998653211000000000    00000  00000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                       ...+ .-+..+++.|+.|++ ++.+++  ....+. +|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus       105 -~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~  181 (337)
T 1gxr_A          105 -LLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             -ECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             -EcCC-CCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence             0000 111446778999999 888877  455555 8999999999999999999999999999999999999999999


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      |...|.+++|+|++++|++++.|+.|++||+++++.+..+....           .+..++|+|++.++++..       
T Consensus       182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~-------  243 (337)
T 1gxr_A          182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-----------QIFSLGYCPTGEWLAVGM-------  243 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-----------CEEEEEECTTSSEEEEEE-------
T ss_pred             ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCC-----------ceEEEEECCCCCEEEEEc-------
Confidence            99999999999999999999999999999999988877664322           233578999999999854       


Q ss_pred             CCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         238 RGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       .++.|++||+.+++... +..|.. |.+++|+|++++|++++. ||.|++||+.+++.+
T Consensus       244 -~~~~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          244 -ESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASI  300 (337)
T ss_dssp             -TTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEE
T ss_pred             -CCCcEEEEECCCCCeEE-EcCCccceeEEEECCCCCEEEEecC-CCcEEEEECCCCeEE
Confidence             49999999999887654 444544 999999999999999999 999999999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-30  Score=217.98  Aligned_cols=234  Identities=12%  Similarity=0.169  Sum_probs=179.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhccc-ccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRK-EKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|+.|++++++|++|+.|+.++||++........            .+++.... ...                      
T Consensus        59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~------------~~~h~~~v~~~~----------------------  104 (304)
T 2ynn_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD------------FEAHPDYIRSIA----------------------  104 (304)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEEEE----------------------
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE------------EeCCCCcEEEEE----------------------
Confidence            4566889999999999999999999865322100            00000000 000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeE-EEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEec-
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSV-QTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIE-  156 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~-~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-  156 (297)
                       .... .-+..+++.|++|++ ++.++... ..+. +|...|.+++|+| ++.+|++|+.|++|++||+.++.....+. 
T Consensus       105 -~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~  181 (304)
T 2ynn_A          105 -VHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT  181 (304)
T ss_dssp             -ECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred             -EcCC-CCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc
Confidence             0000 012458899999999 88887554 4455 9999999999999 67899999999999999998877665554 


Q ss_pred             cccCCeeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         157 AHSKEIDDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       157 ~~~~~v~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      .|...+..+.|+|  ++.+|++++.|++|++||+++++++..+.+|..          .+..++|+|++.+|+++     
T Consensus       182 ~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~----------~v~~~~~~p~~~~l~s~-----  246 (304)
T 2ynn_A          182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS----------NVSFAVFHPTLPIIISG-----  246 (304)
T ss_dssp             CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS----------CEEEEEECSSSSEEEEE-----
T ss_pred             CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC----------CEEEEEECCCCCEEEEE-----
Confidence            5667899999987  778999999999999999999999999988752          23347799999999984     


Q ss_pred             cccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCC--EEEEEecCCCeEEEEEeCC
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGR--FVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~--~l~~~~~~dg~i~vwd~~~  292 (297)
                         +.|+.|++||+.+++++..+..+.. +.+++|+|++.  ++++|+  +..+.+|++.+
T Consensus       247 ---s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~--~~g~~~~~~~~  302 (304)
T 2ynn_A          247 ---SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF--DNGFTVLSLGN  302 (304)
T ss_dssp             ---ETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE--TTEEEEEECC-
T ss_pred             ---cCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec--CCceEEEEecc
Confidence               4599999999999999999988765 99999999875  577777  56688888765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=1.1e-30  Score=226.91  Aligned_cols=239  Identities=13%  Similarity=0.161  Sum_probs=185.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.+++|++..........            ++...-..                        
T Consensus       138 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~v~~------------------------  181 (401)
T 4aez_A          138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA------------GHQARVGC------------------------  181 (401)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------------CCSSCEEE------------------------
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec------------CCCCceEE------------------------
Confidence            466688999999999999999999986432211000            00000000                        


Q ss_pred             CCCCCCCcCCCCCCCceEEE-Eee-CCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFK-TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                       ....+-...+++.|+.|++ ++. .+..+..+. +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|.
T Consensus       182 -~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  259 (401)
T 4aez_A          182 -LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN  259 (401)
T ss_dssp             -EEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred             -EEECCCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence             0000112567889999999 887 455666776 999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEccCCC-EEEEEe--CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         160 KEIDDVDFSISGE-QIVSIA--KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       160 ~~v~~~~~sp~~~-~l~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      ..|.+++|+|++. ++++++  .|+.|++||+++++.+..+..+.           .+..++|+|++.+++++.      
T Consensus       260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~------  322 (401)
T 4aez_A          260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS-----------QVTSLIWSPHSKEIMSTH------  322 (401)
T ss_dssp             SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS-----------CEEEEEECSSSSEEEEEE------
T ss_pred             ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC-----------cEEEEEECCCCCeEEEEe------
Confidence            9999999999765 555654  79999999999998888775432           244588999999998854      


Q ss_pred             cCCCCeEEEEeCCCCceEEE--eccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLA--REMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~--~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |+.|+.|++||+.+++....  +.+|.. |.+++|+|+|.+|++++. ||.|++||+.+++.+
T Consensus       323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-DENLKFWRVYDGDHV  384 (401)
T ss_dssp             CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-TSEEEEEECCC----
T ss_pred             ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEECCCCccc
Confidence            44699999999998665544  556666 999999999999999999 999999999988765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=9.2e-31  Score=228.72  Aligned_cols=238  Identities=16%  Similarity=0.187  Sum_probs=186.7

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|+++|++|++|+.|+.++||++.......            ..+++..+...                        
T Consensus       151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~------------~~~~h~~~v~~------------------------  194 (420)
T 4gga_A          151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR------------NMTSHSARVGS------------------------  194 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEE------------EECCCSSCEEE------------------------
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE------------EEeCCCCceEE------------------------
Confidence            577799999999999999999999986543221            00000000000                        


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC-eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe----eeEEe
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD-SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK----PLLHI  155 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~----~~~~~  155 (297)
                       ....+.+..+++.|+.+++ +..... .+..+. +|...+..+.|+|+++++++++.|+.|++|+..+++    .+...
T Consensus       195 -~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~  272 (420)
T 4gga_A          195 -LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF  272 (420)
T ss_dssp             -EEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE
T ss_pred             -EeeCCCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee
Confidence             0011122567889999999 766544 455666 999999999999999999999999999999998764    35667


Q ss_pred             ccccCCeeEEEEccCCC-EEEEE--eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC
Q psy3337         156 EAHSKEIDDVDFSISGE-QIVSI--AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP  232 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~~-~l~s~--~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~  232 (297)
                      ..|...|.+++|+|++. +++++  +.|++|++||+.+++.+..+..+..           +..+.|+|++..+++++  
T Consensus       273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~-----------v~~~~~~~~~~~lv~~s--  339 (420)
T 4gga_A          273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-----------VCSILWSPHYKELISGH--  339 (420)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-----------EEEEEEETTTTEEEEEE--
T ss_pred             cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-----------eeeeeecCCCCeEEEEE--
Confidence            78999999999999654 55543  5799999999999998888766531           22366899999888754  


Q ss_pred             cccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         233 LAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                          |..|+.|++||+.+++++..+.+|.. |.+++|+|||.+|++|+. |++|+|||+....+
T Consensus       340 ----g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~-D~tvriWdv~~~~~  398 (420)
T 4gga_A          340 ----GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-DETLRLWRCFELDP  398 (420)
T ss_dssp             ----CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-TTEEEEECCSCSSC
T ss_pred             ----ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCc
Confidence                55799999999999999999999987 999999999999999999 99999999976543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=3e-30  Score=233.75  Aligned_cols=233  Identities=20%  Similarity=0.231  Sum_probs=184.8

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      ++.|+++++.|++++.|+.+++|++........    ...      ...  -.....                       
T Consensus       308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~----~~~------~~~--v~~~~~-----------------------  352 (577)
T 2ymu_A          308 GVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL----TGH------SSS--VWGVAF-----------------------  352 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSCEEEEE----CCC------SSC--EEEEEE-----------------------
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE----eCC------CCC--EEEEEE-----------------------
Confidence            456889999999999999999998754322110    000      000  000000                       


Q ss_pred             CCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCe
Q psy3337          83 IEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI  162 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  162 (297)
                       .+..-...+++.|+.++++-.+++.+..+. +|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|
T Consensus       353 -s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v  429 (577)
T 2ymu_A          353 -SPDGQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  429 (577)
T ss_dssp             -CTTSSEEEEEETTSEEEEEETTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCE
T ss_pred             -CCCCCEEEEEeCCCEEEEEcCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCe
Confidence             000111446788999999446788888888 99999999999999999999999999999995 567788899999999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      ++++|+|++++|++++.|++|++||+ +++.+..+..|..          .+..++|+|++++|++++        .|+.
T Consensus       430 ~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~----------~v~~~~~spd~~~las~~--------~d~~  490 (577)
T 2ymu_A          430 WGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS----------SVRGVAFSPDGQTIASAS--------DDKT  490 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS----------CEEEEEECTTSCEEEEEE--------TTSE
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC----------CEEEEEEcCCCCEEEEEe--------CCCE
Confidence            99999999999999999999999996 5677777776642          234588999999999955        4999


Q ss_pred             EEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         243 VQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |++||. +++++..+.+|.. |++++|+|||++|++++. ||.|++||. ++++
T Consensus       491 i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~v~lwd~-~~~~  541 (577)
T 2ymu_A          491 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNR-NGQL  541 (577)
T ss_dssp             EEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSEEEEECT-TSCE
T ss_pred             EEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC-cCEEEEEeC-CCCE
Confidence            999995 5888889998877 999999999999999999 999999996 4444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.98  E-value=2.6e-31  Score=233.26  Aligned_cols=256  Identities=10%  Similarity=0.110  Sum_probs=179.5

Q ss_pred             CcceeeeC-CCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           1 MNCDVHSN-GKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         1 ~~~~~~~~-~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      ++|..|++ ++++|++|+.|+.++||++...............         ..-...                      
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~----------------------  215 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN---------IWFCSL----------------------  215 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS---------CCCCCE----------------------
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC---------ccEEEE----------------------
Confidence            45667875 6889999999999999998643321100000000         000000                      


Q ss_pred             CCCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeE---E
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLL---H  154 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~---~  154 (297)
                        .......+..+++.|+.|++ ++ .++.+..+. +|...|++++|+|++. +|++|+.|+.|++||+++.+...   .
T Consensus       216 --~~~~~~~~l~~g~~dg~i~~wd~-~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~  291 (435)
T 4e54_B          216 --DVSASSRMVVTGDNVGNVILLNM-DGKELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY  291 (435)
T ss_dssp             --EEETTTTEEEEECSSSBEEEEES-SSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred             --EECCCCCEEEEEeCCCcEeeecc-CcceeEEEe-cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence              00001112457889999999 65 456667777 9999999999999875 78899999999999998766433   3


Q ss_pred             eccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC--
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP--  232 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--  232 (297)
                      ..+|...|++++|+|++++|++++.|+.|++||+.++.....+..|......    ........|+|++..+++...+  
T Consensus       292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~  367 (435)
T 4e54_B          292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ----HLTPIKAAWHPRYNLIVVGRYPDP  367 (435)
T ss_dssp             CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS----SSCCCBCEECSSSSCEEEECCCCT
T ss_pred             eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc----cceeEEEEEcCCCCEEEEEEcCCC
Confidence            4579999999999999999999999999999999998887777655421100    0011124577887777766442  


Q ss_pred             --cccccCCCCeEEEEeCCCCceEEEecc-CCC-eEEE-EEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         233 --LAQNKRGISYVQQWDVDSGRLRLAREM-KES-LSAL-AVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       233 --~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~-v~~~-~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                        .+..+..++.|++||..+++++..+.. |.. |.++ +|+|+|.+|++|+  |+.|+|||+++++..|
T Consensus       368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~--d~~i~iW~~~~gk~rK  435 (435)
T 4e54_B          368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM--GYHILIWSQQEARTRK  435 (435)
T ss_dssp             TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC--SSEEEECCCC------
T ss_pred             CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc--CCcEEEEECCcCeeeC
Confidence              344566778999999999999888753 444 7777 6999999999876  7899999999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-30  Score=218.39  Aligned_cols=241  Identities=9%  Similarity=0.031  Sum_probs=166.2

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeec-cccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQM-NGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|+.|++++++|++|+.|+.++||++....... .....      ...+++......-                      
T Consensus        62 ~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~------~~~~~h~~~V~~v----------------------  113 (330)
T 2hes_X           62 RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL------AIIEGHENEVKGV----------------------  113 (330)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEE------EEEC----CEEEE----------------------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeE------EEEcCCCCcEEEE----------------------
Confidence            456689999999999999999999985321100 00000      0000000000000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeC-C---CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC--eeeE
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKT-F---DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM--KPLL  153 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~-~---~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--~~~~  153 (297)
                       .-.+..-+..+++.|++|++ ++.. +   +.+..+. +|...|.+++|+|++++|++|+.|++|++||..++  +++.
T Consensus       114 -~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~  191 (330)
T 2hes_X          114 -AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA  191 (330)
T ss_dssp             -EECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             -EECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEE
Confidence             00001112567889999999 7743 2   3455666 99999999999999999999999999999998766  6788


Q ss_pred             EeccccCCeeEEEEccC--CCEEEEEeCCCcEEEEEcCCC--------ceeeeeec-cCCCCceEEEEeeeeeeeeeCCC
Q psy3337         154 HIEAHSKEIDDVDFSIS--GEQIVSIAKDGKAFVWNSKNG--------SLSKELKW-NTPDNIKYLFKRCRYGLVEDSPK  222 (297)
Q Consensus       154 ~~~~~~~~v~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~  222 (297)
                      .+.+|...|.+++|+|+  +.+|++++.|++|++||++.+        .....+.. |.          ..+..++|+++
T Consensus       192 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~v~~s~~  261 (330)
T 2hes_X          192 VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK----------RQVYNVAWGFN  261 (330)
T ss_dssp             EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS----------SCEEEEEECTT
T ss_pred             EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc----------cceEEEEEcCC
Confidence            89999999999999998  678999999999999998654        12222221 21          23445778876


Q ss_pred             CeEEEEeccCcccccCCCCeEEEEeCCCCc--eEEE-eccCC--CeEEEEEcC--CCCEEEEEecCCCeEEEEEeCC
Q psy3337         223 RSRLFTLANPLAQNKRGISYVQQWDVDSGR--LRLA-REMKE--SLSALAVRD--DGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       223 ~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~--~~~~-~~~~~--~v~~~~~s~--dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      + .|++        ++.|+.|++||..+++  .... +..|.  .|.+++|+|  ++++|++|+. ||.|++||+.+
T Consensus       262 ~-~l~s--------~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~-Dg~v~~W~~~~  328 (330)
T 2hes_X          262 G-LIAS--------VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD-DGIVNFWSLEK  328 (330)
T ss_dssp             S-CEEE--------EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET-TSEEEEEEC--
T ss_pred             C-EEEE--------EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC-CCcEEEEEecc
Confidence            6 6766        4459999999998764  3333 34454  499999999  7899999999 99999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=2.5e-30  Score=220.09  Aligned_cols=234  Identities=15%  Similarity=0.135  Sum_probs=171.1

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhccc-ccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRK-EKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|++++.++++|+.|+.++||++........            ..++.... ...                      
T Consensus        80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~------------~~~h~~~v~~v~----------------------  125 (343)
T 2xzm_R           80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR------------FVGHQSEVYSVA----------------------  125 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE------------EECCCSCEEEEE----------------------
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE------------EcCCCCcEEEEE----------------------
Confidence            4566888999999999999999999865321100            00000000 000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEe--cCCCCcEEEEEEecCC----------CEEEEEcCCCcEEEEeCC
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVF--AGSESLQRVVRLSRNG----------DLMVTGGTDGHLRLWSFP  147 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~--~~h~~~v~~~~~s~~g----------~~l~s~~~d~~i~iwd~~  147 (297)
                       ...+ .-...+++.|++|++ ++. +.......  .+|...|.+++|+|++          .+|++++.|+.|++|| .
T Consensus       126 -~sp~-~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~  201 (343)
T 2xzm_R          126 -FSPD-NRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-T  201 (343)
T ss_dssp             -ECSS-TTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-T
T ss_pred             -ECCC-CCEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-C
Confidence             0000 011457888999999 765 34333332  3688999999999987          7899999999999999 4


Q ss_pred             CCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEE
Q psy3337         148 KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRL  226 (297)
Q Consensus       148 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  226 (297)
                      ..+....+.+|...|.+++|+|++++|++++.|+.|++||+.. ......+...           ..+..++|+|++.++
T Consensus       202 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-----------~~v~~v~~sp~~~~l  270 (343)
T 2xzm_R          202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG-----------STINQIAFNPKLQWV  270 (343)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS-----------SCEEEEEECSSSCEE
T ss_pred             CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC-----------CcEEEEEECCCCCEE
Confidence            5677788899999999999999999999999999999999953 3333333211           124568899999877


Q ss_pred             EEeccCcccccCCCCeEEEEeCCCCceEE--Eec-----------cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         227 FTLANPLAQNKRGISYVQQWDVDSGRLRL--ARE-----------MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       227 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~--~~~-----------~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++. .        |+.|++||+.+++...  .+.           +|.. |.+++|+|+|++|++|+. ||.|++|++.+
T Consensus       271 a~~-~--------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-Dg~v~~w~~~~  340 (343)
T 2xzm_R          271 AVG-T--------DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT-DGVIRTFSFET  340 (343)
T ss_dssp             EEE-E--------SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET-TSEEEEEEEEE
T ss_pred             EEE-C--------CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC-CceEEEEEEEc
Confidence            642 2        7889999998765432  333           4444 999999999999999999 99999999987


Q ss_pred             ce
Q psy3337         293 LQ  294 (297)
Q Consensus       293 ~~  294 (297)
                      +.
T Consensus       341 g~  342 (343)
T 2xzm_R          341 SA  342 (343)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1.7e-29  Score=211.86  Aligned_cols=187  Identities=19%  Similarity=0.224  Sum_probs=167.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|+.|++ +..+++....+. +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus        38 l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  116 (312)
T 4ery_A           38 LASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN  116 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            457889999999 888898888887 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      |++++|++++.|+.|++||+++++.+..+..|..          .+..++|+|++.++++++        .|+.|++||+
T Consensus       117 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~--------~d~~i~~wd~  178 (312)
T 4ery_A          117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----------PVSAVHFNRDGSLIVSSS--------YDGLCRIWDT  178 (312)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS----------CEEEEEECTTSSEEEEEE--------TTSCEEEEET
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC----------cEEEEEEcCCCCEEEEEe--------CCCcEEEEEC
Confidence            9999999999999999999999988888876641          233578999999999854        4999999999


Q ss_pred             CCCceEEEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++++.+..+.. +.. +..++|+|++++|++++. |+.|++||+.+++.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYSKGKCL  227 (312)
T ss_dssp             TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET-TTEEEEEETTTTEEE
T ss_pred             CCCceeeEEeccCCCceEEEEECCCCCEEEEEcC-CCeEEEEECCCCcEE
Confidence            99988877644 333 999999999999999999 999999999988754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=3.2e-30  Score=235.62  Aligned_cols=185  Identities=14%  Similarity=0.141  Sum_probs=157.9

Q ss_pred             CCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecCCCEEEEEcCC----CcEEEEeCCCCeeeEEeccccCCe
Q psy3337          90 NSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRNGDLMVTGGTD----GHLRLWSFPKMKPLLHIEAHSKEI  162 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~v  162 (297)
                      ..+++.|++|+| ++.+++  ....+. +|...|.+++|+|++++|++++.+    +.|++||  .++....+.+|...|
T Consensus        74 lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           74 CASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM  150 (611)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred             EEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence            568889999999 776544  344555 999999999999999999998865    4788887  456677889999999


Q ss_pred             eEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         163 DDVDFSISGE-QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       163 ~~~~~sp~~~-~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      .+++|+|++. .|++++.|++|++||..+++.+..+..|..          .+..++|+|++++|++++        .|+
T Consensus       151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~----------~V~~v~fspdg~~las~s--------~D~  212 (611)
T 1nr0_A          151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK----------FVHSVRYNPDGSLFASTG--------GDG  212 (611)
T ss_dssp             EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS----------CEEEEEECTTSSEEEEEE--------TTS
T ss_pred             eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC----------ceEEEEECCCCCEEEEEE--------CCC
Confidence            9999999987 599999999999999998888888877752          234588999999999954        499


Q ss_pred             eEEEEeCCCCceEEEec-------cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         242 YVQQWDVDSGRLRLARE-------MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~-------~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .|++||+.+++++..+.       +|.. |.+++|+|+|++|++++. |++|++||+.+++.+
T Consensus       213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~-D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVE  274 (611)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEE
T ss_pred             cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC-CCeEEEEeCCCCcee
Confidence            99999999999888874       5665 999999999999999999 999999999987654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=229.48  Aligned_cols=172  Identities=13%  Similarity=0.151  Sum_probs=137.8

Q ss_pred             cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-CeeeE-------EeccccCCeeEEEEccCC-CEEEEEeCCCcEE
Q psy3337         114 AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-MKPLL-------HIEAHSKEIDDVDFSISG-EQIVSIAKDGKAF  184 (297)
Q Consensus       114 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~sp~~-~~l~s~~~d~~v~  184 (297)
                      .+|...|++++|+|++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++ ++|++++.|+.|+
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            4899999999999999999999 799999999984 44443       366899999999999998 9999999999999


Q ss_pred             EEEcCCCce----eeeeeccCCCCce--EEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEEe
Q psy3337         185 VWNSKNGSL----SKELKWNTPDNIK--YLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLAR  257 (297)
Q Consensus       185 lwd~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~  257 (297)
                      +||+++++.    +..+..|......  +......+..++|+|++.+|++        ++. +.|++||+++ ++++..+
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--------~~~-~~v~iwd~~~~~~~~~~~  323 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--------RDY-LSVKVWDLNMENRPVETY  323 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--------EES-SEEEEEETTCCSSCSCCE
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--------eeC-CeEEEEeCCCCcccccee
Confidence            999998876    5666655310000  0000013456889999999987        455 9999999997 8888888


Q ss_pred             ccCCCeE----------------EEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         258 EMKESLS----------------ALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       258 ~~~~~v~----------------~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..|..+.                .++|+|++++|++|+. ||.|++||+.+++.+
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-NNFFRMFDRNTKRDI  377 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-TTEEEEEETTTCCEE
T ss_pred             eccccccccccccccccccccceEEEECCCCCEEEEecc-CCEEEEEEcCCCcce
Confidence            8876522                3999999999999999 999999999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=6.5e-30  Score=236.93  Aligned_cols=186  Identities=22%  Similarity=0.203  Sum_probs=161.2

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE---eccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH---IEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~v~~~  165 (297)
                      ..+++.|++|++ ++.++..+..+. +|...|.+++|+|++++|++|+.|++|++||+........   ..+|...|.++
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  523 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV  523 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred             EEEEeCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence            458899999999 999999988888 9999999999999999999999999999999865443322   24688899999


Q ss_pred             EEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         166 DFSISG--EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       166 ~~sp~~--~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|+|++  ..|++++.|++|++||+++++....+..|..          .+..++|+|++.+|+++        +.|+.|
T Consensus       524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~----------~v~~v~~spdg~~l~sg--------~~Dg~i  585 (694)
T 3dm0_A          524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG----------YVSTVAVSPDGSLCASG--------GKDGVV  585 (694)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS----------CEEEEEECTTSSEEEEE--------ETTSBC
T ss_pred             EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC----------CEEEEEEeCCCCEEEEE--------eCCCeE
Confidence            999986  5899999999999999999988888877752          23458899999999994        459999


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++||+.+++.+..+..+..|.+++|+|++.+|++++  ++.|++||+.+++.+
T Consensus       586 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          586 LLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV  636 (694)
T ss_dssp             EEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence            999999999998888877799999999999998887  667999999987654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=6.8e-30  Score=215.89  Aligned_cols=247  Identities=12%  Similarity=0.045  Sum_probs=182.4

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|+.|++++++|++|+.|+.++||++...........        ...++...-..-                     .
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~~~~~~~~v~~~---------------------~   64 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD--------SWRAHDSSIVAI---------------------D   64 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEE--------EEECCSSCEEEE---------------------E
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecc--------eeccCCCcEEEE---------------------E
Confidence            35777999999999999999999999975311000000        000000000000                     0


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCC---------CeEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCC
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTF---------DSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPK  148 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~---------~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~  148 (297)
                      .......-+..+++.|++|++ ++.++         +.+..+. +|...|.+++|+|+  +++|++++.|+.|++||+++
T Consensus        65 ~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           65 WASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             EcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence            000000112557888999999 88876         4466666 89999999999999  99999999999999999987


Q ss_pred             CeeeEEec-------------cccCCeeEEEEccC---CCEEEEEeCCCcEEEEEcCCCce--eeeeeccCCCCceEEEE
Q psy3337         149 MKPLLHIE-------------AHSKEIDDVDFSIS---GEQIVSIAKDGKAFVWNSKNGSL--SKELKWNTPDNIKYLFK  210 (297)
Q Consensus       149 ~~~~~~~~-------------~~~~~v~~~~~sp~---~~~l~s~~~d~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~  210 (297)
                      ++.+..+.             .|...+.+++|+|+   +.+|++++.|+.+.+|+...+..  +..+..|.         
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------  214 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK---------  214 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC---------
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC---------
Confidence            76544332             57788999999997   89999999999998888777654  44444443         


Q ss_pred             eeeeeeeeeCCCC----eEEEEeccCcccccCCCCeEEEEeCCCC-----------------------------------
Q psy3337         211 RCRYGLVEDSPKR----SRLFTLANPLAQNKRGISYVQQWDVDSG-----------------------------------  251 (297)
Q Consensus       211 ~~~~~~~~~s~~~----~~l~~~~~~~~~~g~~d~~i~~wd~~~~-----------------------------------  251 (297)
                       ..+..++|+|++    .+|+++        +.|+.|++||++.+                                   
T Consensus       215 -~~i~~~~~~p~~~~~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (351)
T 3f3f_A          215 -SLIRSISWAPSIGRWYQLIATG--------CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTE  285 (351)
T ss_dssp             -SCEEEEEECCCSSCSSEEEEEE--------ETTSCEEEEEEEECC----------------------------------
T ss_pred             -cceeEEEECCCCCCcceEEEEE--------cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccc
Confidence             234458899998    788884        45999999999864                                   


Q ss_pred             -----------ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         252 -----------RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       252 -----------~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                                 +.+..+.+|.. |++++|+|++++|++++. ||.|++||+.+++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          286 EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD-DGKVRLWKATYSNEF  341 (351)
T ss_dssp             -----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET-TSCEEEEEECTTSCE
T ss_pred             eeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC-CCcEEEEecCcCcch
Confidence                       56667777766 999999999999999999 999999999987543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=216.70  Aligned_cols=237  Identities=12%  Similarity=0.105  Sum_probs=177.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEee--EEeeccccccccCCCCchhhhhhccc-ccchhhhhccCCCcccccccCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITA--EFTQMNGVVKSKESNNTADTIVRKRK-EKDKENAKQKGGKKEKSNEKGKN   78 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~   78 (297)
                      +|..|++++++|++|+.|+.++||++..  .....  ..          .++...- ...-...                
T Consensus        15 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~----------~~h~~~v~~~~~~~~----------------   66 (379)
T 3jrp_A           15 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--TL----------TGHEGPVWRVDWAHP----------------   66 (379)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE--EE----------CCCSSCEEEEEECCG----------------
T ss_pred             EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee--Ee----------cCCCCcEEEEEeCCC----------------
Confidence            5677899999999999999999999973  22110  00          0000000 0000000                


Q ss_pred             CCCCCCCCCCcCCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCe--e
Q psy3337          79 KKDKIEDPPILNSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMK--P  151 (297)
Q Consensus        79 ~~~~~~~~~~l~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~--~  151 (297)
                            ...-+..+++.|+.|++ ++.+++  .+..+. +|...|.+++|+|+  +++|++++.|+.|++||+.++.  .
T Consensus        67 ------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           67 ------KFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             ------GGCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred             ------CCCCEEEEeccCCEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence                  00112557888999999 888887  555565 89999999999999  9999999999999999998763  4


Q ss_pred             eEEeccccCCeeEEEEcc-------------CCCEEEEEeCCCcEEEEEcCCCcee----eeeeccCCCCceEEEEeeee
Q psy3337         152 LLHIEAHSKEIDDVDFSI-------------SGEQIVSIAKDGKAFVWNSKNGSLS----KELKWNTPDNIKYLFKRCRY  214 (297)
Q Consensus       152 ~~~~~~~~~~v~~~~~sp-------------~~~~l~s~~~d~~v~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~  214 (297)
                      ...+..|...|.+++|+|             ++.+|++++.|+.|++||++++...    ..+..|.          ..+
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~----------~~v  209 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS----------DWV  209 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS----------SCE
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc----------CcE
Confidence            456778999999999999             6999999999999999999876533    3344343          234


Q ss_pred             eeeeeCCC---CeEEEEeccCcccccCCCCeEEEEeCCCCc---eEEEecc--CCC-eEEEEEcCCCCEEEEEecCCCeE
Q psy3337         215 GLVEDSPK---RSRLFTLANPLAQNKRGISYVQQWDVDSGR---LRLAREM--KES-LSALAVRDDGRFVAVGTMFTGSV  285 (297)
Q Consensus       215 ~~~~~s~~---~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~---~~~~~~~--~~~-v~~~~~s~dg~~l~~~~~~dg~i  285 (297)
                      ..++|+|+   +.+|++++.        |+.|++||+.++.   ....+..  +.. |.+++|+|+|++|++++. ||.|
T Consensus       210 ~~~~~sp~~~~~~~l~s~~~--------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i  280 (379)
T 3jrp_A          210 RDVAWSPTVLLRSYLASVSQ--------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKV  280 (379)
T ss_dssp             EEEEECCCCSSSEEEEEEET--------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSE
T ss_pred             eEEEECCCCCCCCeEEEEeC--------CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcE
Confidence            45889999   899998554        9999999999864   2223222  444 999999999999999999 9999


Q ss_pred             EEEEeCC
Q psy3337         286 FVYIAFS  292 (297)
Q Consensus       286 ~vwd~~~  292 (297)
                      ++|++..
T Consensus       281 ~iw~~~~  287 (379)
T 3jrp_A          281 TLWKENL  287 (379)
T ss_dssp             EEEEEEE
T ss_pred             EEEeCCC
Confidence            9999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2.1e-30  Score=222.48  Aligned_cols=180  Identities=8%  Similarity=0.030  Sum_probs=147.1

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE--EeccccCCeeEEEE
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL--HIEAHSKEIDDVDF  167 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~  167 (297)
                      .+++.|++|+| ++.+++.+..+  .|...|.+++|+|||++|++++.+ .+.+|+..+++.+.  ....|...|.+++|
T Consensus       151 as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~f  227 (365)
T 4h5i_A          151 ASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINF  227 (365)
T ss_dssp             EESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEE
T ss_pred             EECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEE
Confidence            36778999999 99999888877  577789999999999999999855 56667766666543  44568889999999


Q ss_pred             ccCCCEEEEEeCCC----cEEEEEcCCCcee----eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         168 SISGEQIVSIAKDG----KAFVWNSKNGSLS----KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       168 sp~~~~l~s~~~d~----~v~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      +|+++++++++.|+    .+++||+......    ..+..|.          ..+..++|+|+|++|++        |+.
T Consensus       228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~V~~~~~Spdg~~las--------gs~  289 (365)
T 4h5i_A          228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF----------KGITSMDVDMKGELAVL--------ASN  289 (365)
T ss_dssp             EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC----------SCEEEEEECTTSCEEEE--------EET
T ss_pred             cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCC----------CCeEeEEECCCCCceEE--------EcC
Confidence            99999999998887    6888998765432    2232332          22446889999999999        455


Q ss_pred             CCeEEEEeCCCCceEEEe-ccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         240 ISYVQQWDVDSGRLRLAR-EMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~-~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      |+.|++||+.+++++..+ .+|.. |++++|+|||++|++|+. |++|+|||++.
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~-D~tvrvw~ip~  343 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA-ANTIHIIKLPL  343 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET-TSEEEEEECCT
T ss_pred             CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC-CCeEEEEEcCC
Confidence            999999999999998875 67877 999999999999999999 99999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=8.1e-30  Score=236.26  Aligned_cols=235  Identities=17%  Similarity=0.177  Sum_probs=178.4

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.++||++........            ..++.......                       
T Consensus       434 ~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~------------~~~h~~~v~~~-----------------------  478 (694)
T 3dm0_A          434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR------------FVGHTKDVLSV-----------------------  478 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEE-----------------------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE------------EeCCCCCEEEE-----------------------
Confidence            4667899999999999999999999865432110            00000000000                       


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEe---cCCCCcEEEEEEecCC--CEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVF---AGSESLQRVVRLSRNG--DLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~---~~h~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                      ...+..-...+++.|++|+++-..+.....+.   .+|...|.+++|+|++  ..|++|+.|+.|++||+++++....+.
T Consensus       479 ~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~  558 (694)
T 3dm0_A          479 AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA  558 (694)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            00000111457889999999433344443432   3689999999999987  689999999999999999999999999


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      +|...|++++|+|++++|++++.|++|++||+++++.+..+..+.           .+..++|+|++.++++..      
T Consensus       559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~sp~~~~l~~~~------  621 (694)
T 3dm0_A          559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-----------VIHALCFSPNRYWLCAAT------  621 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS-----------CEEEEEECSSSSEEEEEE------
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC-----------cEEEEEEcCCCcEEEEEc------
Confidence            999999999999999999999999999999999998887765432           234578999998877643      


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCC--------------------CeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKE--------------------SLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~--------------------~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                         ++.|++||+.+++++..+..+.                    .+.+++|+|||++|++|+. ||.|+|||+..
T Consensus       622 ---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~-Dg~i~iW~i~~  693 (694)
T 3dm0_A          622 ---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT-DGVIRVWGIGR  693 (694)
T ss_dssp             ---TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET-TSEEEEEEC--
T ss_pred             ---CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC-CCeEEEEeccC
Confidence               5679999999988887664321                    1678999999999999999 99999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=5.3e-30  Score=221.54  Aligned_cols=195  Identities=15%  Similarity=0.158  Sum_probs=160.6

Q ss_pred             CCCCCCCceEEE-EeeC------CCeEE-----EEe------cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee
Q psy3337          90 NSIDSKEKNLRF-GFKT------FDSVQ-----TVF------AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP  151 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~------~~~~~-----~~~------~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  151 (297)
                      ..+++.|+.|++ ++.+      ++.+.     .+.      ..|...|.+++|+|++ +|++++.|+.|++||+++++.
T Consensus       141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce
Confidence            446778999999 8888      66665     663      2588999999999999 999999999999999999999


Q ss_pred             eEEecc---c---cCCeeEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeeccCCCCceEEE---Eeeeeeeeee
Q psy3337         152 LLHIEA---H---SKEIDDVDFSISGEQIVSIAKD---GKAFVWNSKNGSLSKELKWNTPDNIKYLF---KRCRYGLVED  219 (297)
Q Consensus       152 ~~~~~~---~---~~~v~~~~~sp~~~~l~s~~~d---~~v~lwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  219 (297)
                      +..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+............   ....+..++|
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE
Confidence            999998   9   9999999999999999999999   99999999999888888761100000000   1123446889


Q ss_pred             CCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec------cC---------------CC-eEEEEEcCCC-----
Q psy3337         220 SPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE------MK---------------ES-LSALAVRDDG-----  272 (297)
Q Consensus       220 s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~------~~---------------~~-v~~~~~s~dg-----  272 (297)
                      +|++.+|++++        .|+.|++||+.+++++..+.      .|               .. |.+++|+|+|     
T Consensus       300 ~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          300 NDSGETLCSAG--------WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             CSSSSEEEEEE--------TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             CCCCCEEEEEe--------CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence            99999999854        49999999999999999998      65               55 9999999998     


Q ss_pred             -----CEEEEEecCCCeEEEEEeCCce
Q psy3337         273 -----RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       273 -----~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                           .+|++++. ||.|++||+.+++
T Consensus       372 ~~~~~~~l~s~~~-dg~i~iw~~~~g~  397 (397)
T 1sq9_A          372 GADLNESLCCVCL-DRSIRWFREAGGK  397 (397)
T ss_dssp             TCTTSCEEEEEET-TTEEEEEEEEC--
T ss_pred             cccccceEEEecC-CCcEEEEEcCCCC
Confidence                 79999999 9999999998874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=4.8e-29  Score=210.31  Aligned_cols=235  Identities=12%  Similarity=0.171  Sum_probs=183.1

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++++.|+.+++|++...............       ..-  ....                       
T Consensus       101 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------~~i--~~~~-----------------------  148 (337)
T 1gxr_A          101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-------PAC--YALA-----------------------  148 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-------SCE--EEEE-----------------------
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC-------Cce--EEEE-----------------------
Confidence            45668899999999999999999998654311000000000       000  0000                       


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                       ..+..-...+++.|+.|++ ++.+++.+..+. +|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +..
T Consensus       149 -~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~  225 (337)
T 1gxr_A          149 -ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS  225 (337)
T ss_dssp             -ECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             -ECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCC
Confidence             0000111446778999999 999998888887 899999999999999999999999999999999998887775 778


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .+.+++|+|++++|++++.|+.|++||+++++.. .+..|.          ..+..++|+|++.+|++.+.        |
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~----------~~v~~~~~~~~~~~l~~~~~--------d  286 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE----------SCVLSLKFAYCGKWFVSTGK--------D  286 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS----------SCEEEEEECTTSSEEEEEET--------T
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc----------cceeEEEECCCCCEEEEecC--------C
Confidence            8999999999999999999999999999887653 333332          12445889999999998554        9


Q ss_pred             CeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         241 SYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      +.|++||+.+++.+........|.+++|+|++++|++++. ||.|++|++.
T Consensus       287 g~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~  336 (337)
T 1gxr_A          287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-DKKATVYEVI  336 (337)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSCEEEEEEE
T ss_pred             CcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC-CCeEEEEEEe
Confidence            9999999999988877666666999999999999999999 9999999973

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.4e-30  Score=221.88  Aligned_cols=248  Identities=13%  Similarity=0.113  Sum_probs=189.9

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++++.|+.+++|++...............     ........ ..  .   . +..      ..... 
T Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~-~~--~---~-~~~------~~~~~-  213 (425)
T 1r5m_A          153 VSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG-----GSSINAEN-HS--G---D-GSL------GVDVE-  213 (425)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------------------CCC------BSCCE-
T ss_pred             EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC-----ccceeecc-cc--C---C-cce------eeEEE-
Confidence            45668899999999999999999998654322100000000     00000000 00  0   0 000      00000 


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      ...+  -....++.|+.|++ ++.+++.+..+. +|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..
T Consensus       214 ~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  290 (425)
T 1r5m_A          214 WVDD--DKFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ  290 (425)
T ss_dssp             EEET--TEEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS
T ss_pred             EcCC--CEEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc
Confidence            0000  01346778999999 999998888887 9999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|.+++|+|++ +|++++.|+.|++||+++++.+..+..|..          .+..++|+|++.+|++++        .|
T Consensus       291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~l~~~~--------~d  351 (425)
T 1r5m_A          291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV----------PIFAGRISQDGQKYAVAF--------MD  351 (425)
T ss_dssp             CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC----------CEEEEEECTTSSEEEEEE--------TT
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc----------cEEEEEEcCCCCEEEEEE--------CC
Confidence            99999999999 999999999999999999988888876541          234578999999999855        49


Q ss_pred             CeEEEEeCCCCc--------------------eEEEeccC--C-CeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         241 SYVQQWDVDSGR--------------------LRLAREMK--E-SLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       241 ~~i~~wd~~~~~--------------------~~~~~~~~--~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      +.|++||+.+++                    ++..+..+  . .|.+++|+|++++|++++. ||.|++||++
T Consensus       352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~  424 (425)
T 1r5m_A          352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS-LQEGSVVAIP  424 (425)
T ss_dssp             SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES-SSCCEEEECC
T ss_pred             CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec-CceEEEEeec
Confidence            999999999887                    88888887  5 6999999999999999999 9999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.3e-30  Score=224.06  Aligned_cols=236  Identities=14%  Similarity=0.062  Sum_probs=169.2

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|+.|++++++|++|+.|+.++||++...........          .++...-..-                      
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~----------------------   61 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF----------SDHDKIVTCV----------------------   61 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB----------CCCSSCEEEE----------------------
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE----------ecCCceEEEE----------------------
Confidence            46777999999999999999999999985421100000          0000000000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCC---eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe---eeE
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFD---SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK---PLL  153 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~  153 (297)
                       ...+..-+..+++.|++|++ ++.+++   ....+. +|...|.+++|+|++++|++++.|+.|++||+++++   ...
T Consensus        62 -~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           62 -DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             -EECTTTCCEEEEETTSSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred             -EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence             00000112557889999999 888876   555565 899999999999999999999999999999998876   467


Q ss_pred             Eecc-ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC------------------ceeeeeeccCCCCceEEEEeeee
Q psy3337         154 HIEA-HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG------------------SLSKELKWNTPDNIKYLFKRCRY  214 (297)
Q Consensus       154 ~~~~-~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  214 (297)
                      .+.. |...|.+++|+|++++|++++.|+.|++||++..                  +.+..+ .|.          ..+
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~v  208 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG----------GWV  208 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS----------SSE
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC----------ceE
Confidence            7777 9999999999999999999999999999998633                  222333 221          234


Q ss_pred             eeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce----EEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         215 GLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL----RLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       215 ~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~----~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      ..++|+|++++|++++        .|+.|++||+.+++.    +..+..|.. |.+++|+|+|++|++++. ++.+ +|+
T Consensus       209 ~~~~~sp~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~-~~~  278 (377)
T 3dwl_C          209 HAVGFSPSGNALAYAG--------HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN-YSPI-LLQ  278 (377)
T ss_dssp             EEEEECTTSSCEEEEE--------TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS-SSEE-EEC
T ss_pred             EEEEECCCCCEEEEEe--------CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC-CcEE-EEE
Confidence            5688999999999954        499999999999877    677777776 999999999999999986 6655 666


Q ss_pred             eC
Q psy3337         290 AF  291 (297)
Q Consensus       290 ~~  291 (297)
                      ..
T Consensus       279 ~~  280 (377)
T 3dwl_C          279 GN  280 (377)
T ss_dssp             CC
T ss_pred             eC
Confidence            54

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=9.7e-30  Score=217.01  Aligned_cols=193  Identities=15%  Similarity=0.260  Sum_probs=155.2

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEe---ccccCCeeE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHI---EAHSKEIDD  164 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~  164 (297)
                      ..+++.|+.|++ ++.+++.+..+. +|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+   ..|...|.+
T Consensus        88 l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             EEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            557889999999 889999999988 9999999999999 8999999999999999999999988888   789999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec----------------------------cCC--------------
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW----------------------------NTP--------------  202 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~----------------------------~~~--------------  202 (297)
                      ++|+|++++|++++.|+.|++||+++++.+..+..                            |..              
T Consensus       167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  246 (366)
T 3k26_A          167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILS  246 (366)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEE
T ss_pred             EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEE
Confidence            99999999999999999999999987654322211                            110              


Q ss_pred             ---CCceEEEE---------------------------eeeeeeeeeCCC--CeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         203 ---DNIKYLFK---------------------------RCRYGLVEDSPK--RSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       203 ---~~~~~~~~---------------------------~~~~~~~~~s~~--~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                         ++....+.                           ...+..++|+|+  +.+|++        |+.|+.|++||+.+
T Consensus       247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--------~~~dg~i~vwd~~~  318 (366)
T 3k26_A          247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--------GNQVGKLYVWDLEV  318 (366)
T ss_dssp             ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--------ECTTSCEEEEECCS
T ss_pred             EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--------EecCCcEEEEECCC
Confidence               00000000                           012334677788  888888        55599999999998


Q ss_pred             Cc----eEEEeccC---CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         251 GR----LRLAREMK---ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       251 ~~----~~~~~~~~---~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++    ....+..|   ..|.+++|+|++++|++++. ||.|++||+.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~  366 (366)
T 3k26_A          319 EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD-DASIWRWDRLR  366 (366)
T ss_dssp             SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEEC--
T ss_pred             CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC-CCEEEEEEecC
Confidence            65    44567766   34999999999999999999 99999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-31  Score=236.22  Aligned_cols=185  Identities=18%  Similarity=0.151  Sum_probs=154.4

Q ss_pred             cCCCCCCCceEEE-EeeCCCe-----------EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC-eeeEEe
Q psy3337          89 LNSIDSKEKNLRF-GFKTFDS-----------VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM-KPLLHI  155 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~~~~~-----------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~  155 (297)
                      +..+++.|++|++ ++.++..           ...+. +|...|++++|+|++ .|++|+.||+|++||++++ .+...+
T Consensus       227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~  304 (524)
T 2j04_B          227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYD  304 (524)
T ss_dssp             EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEE
T ss_pred             eEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEe
Confidence            3567889999999 8876542           23455 899999999999864 8999999999999999876 455678


Q ss_pred             ccccCCeeEE--EEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC
Q psy3337         156 EAHSKEIDDV--DFSISG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP  232 (297)
Q Consensus       156 ~~~~~~v~~~--~~sp~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~  232 (297)
                      .+|...|.++  +|+|++ .+|++++.|++|+|||+++++.+..+..|.+..        .+..++|+|++..+++.   
T Consensus       305 ~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~--------~v~~v~fsp~~~~l~s~---  373 (524)
T 2j04_B          305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS--------NLVPVVYCPQIYSYIYS---  373 (524)
T ss_dssp             ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC--------SCCCEEEETTTTEEEEE---
T ss_pred             ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC--------cccceEeCCCcCeEEEe---
Confidence            8999999999  578887 899999999999999999887776666554211        12347899999988884   


Q ss_pred             cccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         233 LAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                           +.|++|++||++++.++..+.+|.. |++++|+|+|++|++|+. ||+|++||+..
T Consensus       374 -----~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~-Dgtv~lwd~~~  428 (524)
T 2j04_B          374 -----DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA-DGSLIITNAAR  428 (524)
T ss_dssp             -----CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET-TTEEECCBSCS
T ss_pred             -----CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC-CCEEEEEechH
Confidence                 4499999999999988888888876 999999999999999999 99999999754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=9.1e-30  Score=219.42  Aligned_cols=248  Identities=13%  Similarity=0.119  Sum_probs=178.4

Q ss_pred             cceeeeC-CCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSN-GKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~-~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|++ ++++|++++.|+.+++|++..........   ....    ...  -....-                     
T Consensus       122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~----~~~--v~~~~~---------------------  171 (383)
T 3ei3_B          122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAK---TDSW----DYW--YCCVDV---------------------  171 (383)
T ss_dssp             EEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEEC---CCCS----SCC--EEEEEE---------------------
T ss_pred             eEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEec---cCCC----CCC--eEEEEE---------------------
Confidence            3556777 67999999999999999987432211000   0000    000  000000                     


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCC----CeeeEE
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPK----MKPLLH  154 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~----~~~~~~  154 (297)
                         .+......+++.|+.|++ ++ +++.+..+. +|...|.+++|+|+++ +|++|+.|+.|++||+++    +..+..
T Consensus       172 ---~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  246 (383)
T 3ei3_B          172 ---SVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE  246 (383)
T ss_dssp             ---ETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred             ---CCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence               000112457888999999 76 678888888 9999999999999998 999999999999999987    556666


Q ss_pred             eccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC-
Q psy3337         155 IEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP-  232 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-  232 (297)
                      + +|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..|......   ....+ .+.|+|++..++....+ 
T Consensus       247 ~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~p~~~~~~~~~s~d  321 (383)
T 3ei3_B          247 M-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ---HLTPI-KATWHPMYDLIVAGRYPD  321 (383)
T ss_dssp             E-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT---TSCCC-CCEECSSSSEEEEECBCC
T ss_pred             e-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc---cccce-EEeccCCCCceEEEecCC
Confidence            6 6999999999999 9999999999999999999998887777655311000   00000 12345555544433221 


Q ss_pred             -cccccCCCCeEEEEeCCCCceEEEeccC--CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         233 -LAQNKRGISYVQQWDVDSGRLRLAREMK--ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       233 -~~~~g~~d~~i~~wd~~~~~~~~~~~~~--~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                       .. +|+.|+.|++||+.+++++..+..+  .. +..++|+|++++|++|+  |+.|++||+.+
T Consensus       322 g~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s--d~~i~iw~~~~  382 (383)
T 3ei3_B          322 DQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM--GFNILIWNRED  382 (383)
T ss_dssp             TTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE--TTEEEEEECC-
T ss_pred             ccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec--CCcEEEEecCC
Confidence             22 4778999999999999999999863  34 77789999999999995  99999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=4.4e-29  Score=213.69  Aligned_cols=239  Identities=14%  Similarity=0.054  Sum_probs=183.2

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|+.|++++++|++++.|+.++||++...............       ..  -....-.                    
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~-------~~--v~~~~~~--------------------   61 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-------GQ--VTGVDWA--------------------   61 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS-------SC--EEEEEEE--------------------
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC-------Cc--ccEEEEe--------------------
Confidence            457779999999999999999999998765311000000000       00  0000000                    


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee----eEE
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP----LLH  154 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----~~~  154 (297)
                         .+ .-+..+++.|+.|++ ++.+++....+. ..|...|.+++|+|++++|++++.|+.|++||+..++.    ...
T Consensus        62 ---~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           62 ---PD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             ---TT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             ---CC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence               00 011456788999999 888887655543 47999999999999999999999999999999987652    233


Q ss_pred             eccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC------------------CCceeeeeeccCCCCceEEEEeeeeee
Q psy3337         155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK------------------NGSLSKELKWNTPDNIKYLFKRCRYGL  216 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (297)
                      ...|...|.+++|+|++++|++++.|+.|++||++                  .++.+..+..|.          ..+..
T Consensus       138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~  207 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC----------GWVHG  207 (372)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS----------SCEEE
T ss_pred             ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC----------CeEEE
Confidence            46789999999999999999999999999999964                  455666665443          12445


Q ss_pred             eeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         217 VEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       217 ~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++|+|++.+|++++        .|+.|++||+++++++..+..+.. |.+++|+|++.+|++| . |+.|++|++.+
T Consensus       208 ~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~  274 (372)
T 1k8k_C          208 VCFSANGSRVAWVS--------HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDS  274 (372)
T ss_dssp             EEECSSSSEEEEEE--------TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEET
T ss_pred             EEECCCCCEEEEEe--------CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e-CCeEEEEEccC
Confidence            88999999999855        499999999999999999988875 9999999999999888 6 99999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.4e-29  Score=210.80  Aligned_cols=238  Identities=16%  Similarity=0.179  Sum_probs=181.5

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.++||++.........            +++..+..                         
T Consensus        71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~------------~~h~~~~~-------------------------  113 (318)
T 4ggc_A           71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM------------TSHSARVG-------------------------  113 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------------ECCSSCEE-------------------------
T ss_pred             EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe------------cCccceEE-------------------------
Confidence            56779999999999999999999998654432100            00000000                         


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC-eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee----eEEe
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD-SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP----LLHI  155 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----~~~~  155 (297)
                      .....+.+..+++.++.+++ +..... .+..+. +|...+.++.+++++++|++++.|+.|++||+++++.    ....
T Consensus       114 ~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  192 (318)
T 4ggc_A          114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF  192 (318)
T ss_dssp             EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEE
T ss_pred             EeecCCCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeee
Confidence            00001112557888888988 665544 445555 9999999999999999999999999999999987653    3455


Q ss_pred             ccccCCeeEEEEccCCCEE---EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC
Q psy3337         156 EAHSKEIDDVDFSISGEQI---VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP  232 (297)
Q Consensus       156 ~~~~~~v~~~~~sp~~~~l---~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~  232 (297)
                      ..|...|.++.++|++..+   ++++.+++|++||.+..........+.           .+..+.|+|++..+++++  
T Consensus       193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~s--  259 (318)
T 4ggc_A          193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-----------QVCSILWSPHYKELISGH--  259 (318)
T ss_dssp             CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS-----------CEEEEEEETTTTEEEEEE--
T ss_pred             cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee-----------eeeeeeecccccceEEEE--
Confidence            6788899999999976543   356778999999998877665554332           123466889988887754  


Q ss_pred             cccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         233 LAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                          |+.|+.|++||+++++++..+.+|.. |++++|+|||++|++|+. ||+|+|||+..+.+
T Consensus       260 ----g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~-D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          260 ----GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-DETLRLWRCFELDP  318 (318)
T ss_dssp             ----CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-TTEEEEECCSCCCC
T ss_pred             ----EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCC
Confidence                56799999999999999999999877 999999999999999999 99999999987653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.2e-29  Score=210.73  Aligned_cols=182  Identities=12%  Similarity=0.123  Sum_probs=140.9

Q ss_pred             CCCCceEEE-Ee-eCCCeEEEEecCCCCcEEEEEEec---CCCEEEEEcCCCcEEEEeCCCCeeeEEecccc---CCeeE
Q psy3337          93 DSKEKNLRF-GF-KTFDSVQTVFAGSESLQRVVRLSR---NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS---KEIDD  164 (297)
Q Consensus        93 ~~~d~~i~~-~~-~~~~~~~~~~~~h~~~v~~~~~s~---~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~  164 (297)
                      ...|+.|++ ++ .+|+.+..+. +|...++.++|+|   ++.+|++|+.|++|+|||+.+++.+.++.+|.   ..+.+
T Consensus       153 ~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~  231 (356)
T 2w18_A          153 TLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCH  231 (356)
T ss_dssp             SSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEE
T ss_pred             cCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEE
Confidence            346889999 77 5588888888 9999999999999   77999999999999999999999999998654   36778


Q ss_pred             EEEccCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC
Q psy3337         165 VDFSISGEQI------------VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP  232 (297)
Q Consensus       165 ~~~sp~~~~l------------~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~  232 (297)
                      ++|+|++.++            ++|+.|++|++||+.+++.+..+....|.+....+       +..+.++..+++    
T Consensus       232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~-------lsg~~sg~~lAS----  300 (356)
T 2w18_A          232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF-------LEGDVKDHCAAA----  300 (356)
T ss_dssp             EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE-------EEEEEETTEEEE----
T ss_pred             EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee-------EccccCCCEEEE----
Confidence            8999999876            56788999999999999887655321111100000       111222555665    


Q ss_pred             cccccCCCCeEEEEeCCCCceEEEeccCCC--eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         233 LAQNKRGISYVQQWDVDSGRLRLAREMKES--LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                          |+.|++|++||+.+++++.++.+|..  +.+++|+|||++|++|+. |++|+|||+.
T Consensus       301 ----gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~-D~TIklWd~~  356 (356)
T 2w18_A          301 ----ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK-DGNIFVYHYS  356 (356)
T ss_dssp             ----EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT-TSCEEEEEEC
T ss_pred             ----EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC-CCcEEEecCC
Confidence                56699999999999999999998755  456899999999999999 9999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.8e-29  Score=214.79  Aligned_cols=184  Identities=17%  Similarity=0.197  Sum_probs=157.8

Q ss_pred             CCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE----------------
Q psy3337          90 NSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL----------------  153 (297)
Q Consensus        90 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~----------------  153 (297)
                      ..+++.|+.|+++-.+++.+..+. +|...|.+++|+|++++|++++.|+.|++||+.+++.+.                
T Consensus       123 l~~~~~dg~i~i~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          123 IVTGVENGELRLWNKTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             EEEEETTSCEEEEETTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEeCCCeEEEEeCCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence            456788999999337788888887 999999999999999999999999999999997665433                


Q ss_pred             ----------------------------------------EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         154 ----------------------------------------HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       154 ----------------------------------------~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                                                              .+..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                                                    3345778899999999999999999999999999998888


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCC
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDG  272 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg  272 (297)
                      +..+..|..          .+..++|+|++ .+++++        .|+.|++||+.+++.+..+..+.. |.+++|+|++
T Consensus       282 ~~~~~~~~~----------~i~~~~~~~~~-~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          282 QNCFYGHSQ----------SIVSASWVGDD-KVISCS--------MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG  342 (425)
T ss_dssp             SEEECCCSS----------CEEEEEEETTT-EEEEEE--------TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred             ceEecCCCc----------cEEEEEECCCC-EEEEEe--------CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence            877765531          23457889999 777744        499999999999999999988766 9999999999


Q ss_pred             CEEEEEecCCCeEEEEEeCCce
Q psy3337         273 RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++|++++. ||.|++||+.+++
T Consensus       343 ~~l~~~~~-dg~i~i~~~~~~~  363 (425)
T 1r5m_A          343 QKYAVAFM-DGQVNVYDLKKLN  363 (425)
T ss_dssp             SEEEEEET-TSCEEEEECHHHH
T ss_pred             CEEEEEEC-CCeEEEEECCCCc
Confidence            99999999 9999999998766

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.2e-29  Score=219.26  Aligned_cols=189  Identities=15%  Similarity=0.114  Sum_probs=159.5

Q ss_pred             CCCCCCCceEEE-EeeCCCe-----EEEEecCC-----CCcEEEEEEe----cCCCE-EEEEcCCCcEEEEeCCC-----
Q psy3337          90 NSIDSKEKNLRF-GFKTFDS-----VQTVFAGS-----ESLQRVVRLS----RNGDL-MVTGGTDGHLRLWSFPK-----  148 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~-----~~~~~~~h-----~~~v~~~~~s----~~g~~-l~s~~~d~~i~iwd~~~-----  148 (297)
                      ..+++.|+.|++ ++.+++.     +..+. .|     ...|.+++|+    |++++ |++++.|+.|++||+.+     
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            556788999999 8888886     77777 77     5899999999    99999 99999999999999988     


Q ss_pred             -CeeeE-----Ee-------ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec---cCCCCceEEEEee
Q psy3337         149 -MKPLL-----HI-------EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW---NTPDNIKYLFKRC  212 (297)
Q Consensus       149 -~~~~~-----~~-------~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~  212 (297)
                       ++.+.     .+       ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+..   |.+.       ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~-------~~  234 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN-------SN  234 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC-------CC
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc-------CC
Confidence             66655     66       4488899999999999 999999999999999999988888876   4100       12


Q ss_pred             eeeeeeeCCCCeEEEEeccCcccccCCC---CeEEEEeCCCCceEEEecc-------------CCC-eEEEEEcCCCCEE
Q psy3337         213 RYGLVEDSPKRSRLFTLANPLAQNKRGI---SYVQQWDVDSGRLRLAREM-------------KES-LSALAVRDDGRFV  275 (297)
Q Consensus       213 ~~~~~~~s~~~~~l~~~~~~~~~~g~~d---~~i~~wd~~~~~~~~~~~~-------------~~~-v~~~~~s~dg~~l  275 (297)
                      .+..++|+|++.+|++.+.        |   +.|++||+.+++.+..+..             |.. |.+++|+|++++|
T Consensus       235 ~i~~i~~~~~~~~l~~~~~--------d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHD--------SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEE--------ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             ccceEEECCCCCEEEEEec--------CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence            2445889999999998554        8   9999999999999999887             666 9999999999999


Q ss_pred             EEEecCCCeEEEEEeCCceec
Q psy3337         276 AVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++++. ||.|++||+.+++.+
T Consensus       307 ~~~~~-dg~i~iwd~~~~~~~  326 (397)
T 1sq9_A          307 CSAGW-DGKLRFWDVKTKERI  326 (397)
T ss_dssp             EEEET-TSEEEEEETTTTEEE
T ss_pred             EEEeC-CCeEEEEEcCCCcee
Confidence            99999 999999999988764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.5e-29  Score=211.57  Aligned_cols=236  Identities=12%  Similarity=0.071  Sum_probs=182.7

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++++.|+.+++|++..........   ..   ..      -....                       
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~---~~------v~~~~-----------------------  122 (369)
T 3zwl_B           78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SP---VP------VKRVE-----------------------  122 (369)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CS---SC------EEEEE-----------------------
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cC---CC------eEEEE-----------------------
Confidence            456688899999999999999999986533211000   00   00      00000                       


Q ss_pred             CCCCCCCcCCCCCCC-----ceEEE-EeeCCC-----------eEEEEecCCCC--cEEEEEEecCCCEEEEEcCCCcEE
Q psy3337          82 KIEDPPILNSIDSKE-----KNLRF-GFKTFD-----------SVQTVFAGSES--LQRVVRLSRNGDLMVTGGTDGHLR  142 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d-----~~i~~-~~~~~~-----------~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~d~~i~  142 (297)
                      ...+... ...+..+     +.|++ ++..+.           .+..+. .|..  .+.+++|+|++++|++++.|+.|+
T Consensus       123 ~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  200 (369)
T 3zwl_B          123 FSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDAATVAGWSTKGKYIIAGHKDGKIS  200 (369)
T ss_dssp             ECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             EccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccceeEEEEcCCCCEEEEEcCCCEEE
Confidence            0000001 2233333     88998 776653           333444 5665  899999999999999999999999


Q ss_pred             EEeCCC-CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC
Q psy3337         143 LWSFPK-MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP  221 (297)
Q Consensus       143 iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  221 (297)
                      +||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+....           .+..++|+|
T Consensus       201 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------~~~~~~~~~  269 (369)
T 3zwl_B          201 KYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC-----------PLNTAVITP  269 (369)
T ss_dssp             EEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-----------CEEEEEECS
T ss_pred             EEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC-----------CceeEEecC
Confidence            999998 78888999999999999999999999999999999999999998888776322           233477899


Q ss_pred             CCeEEEEeccCcccccCCCC--------------eEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         222 KRSRLFTLANPLAQNKRGIS--------------YVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       222 ~~~~l~~~~~~~~~~g~~d~--------------~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                      ++.++++...        ++              .+++||+.+++.+..+..|.. |.+++|+|++++|++++. ||.|+
T Consensus       270 ~~~~l~~~~~--------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~  340 (369)
T 3zwl_B          270 LKEFIILGGG--------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE-DGFIR  340 (369)
T ss_dssp             SSSEEEEEEC--------CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred             CCceEEEeec--------CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC-CCeEE
Confidence            9999998654        44              899999999999999998877 999999999999999999 99999


Q ss_pred             EEEeCCce
Q psy3337         287 VYIAFSLQ  294 (297)
Q Consensus       287 vwd~~~~~  294 (297)
                      +|++.++.
T Consensus       341 iw~~~~~~  348 (369)
T 3zwl_B          341 LHHFEKSY  348 (369)
T ss_dssp             EEEECHHH
T ss_pred             EEECcccc
Confidence            99998754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=4.1e-29  Score=234.95  Aligned_cols=241  Identities=13%  Similarity=0.131  Sum_probs=193.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++.+|++++.|+.++||++...........  ..       +.  -....-.+...                 
T Consensus        17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~--~~-------~~--v~~~~~s~~~~-----------------   68 (814)
T 3mkq_A           17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV--TE-------TP--VRAGKFIARKN-----------------   68 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CS-------SC--EEEEEEEGGGT-----------------
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec--CC-------Cc--EEEEEEeCCCC-----------------
Confidence            5677999999999999999999999865332110000  00       00  00000000000                 


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC-eeeEEecccc
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM-KPLLHIEAHS  159 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~  159 (297)
                             +..+++.|+.|++ +..+++.+..+. +|...|++++|+|++++|++++.|+.|++||+.++ .....+.+|.
T Consensus        69 -------~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  140 (814)
T 3mkq_A           69 -------WIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (814)
T ss_dssp             -------EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred             -------EEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence                   1456778999999 899999999998 99999999999999999999999999999999876 6778888999


Q ss_pred             CCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC--CCeEEEEeccCcccc
Q psy3337         160 KEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP--KRSRLFTLANPLAQN  236 (297)
Q Consensus       160 ~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~~~  236 (297)
                      ..|.+++|+| ++..|++++.|+.|++||+.++.....+..+...         .+..++|+|  ++.++++.       
T Consensus       141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~~~-------  204 (814)
T 3mkq_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER---------GVNYVDYYPLPDKPYMITA-------  204 (814)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTT---------CCCEEEECCSTTCCEEEEE-------
T ss_pred             CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCC---------CEEEEEEEECCCCCEEEEE-------
Confidence            9999999999 8899999999999999999888777666544311         233467788  89999984       


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       +.|+.|++||+.+++.+..+..|.. |.+++|+|++.+|++++. ||.|++||+.+++.+
T Consensus       205 -~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          205 -SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVE  263 (814)
T ss_dssp             -CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCSEE
T ss_pred             -eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEE
Confidence             4599999999999999999988776 999999999999999999 999999999887653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.1e-28  Score=214.35  Aligned_cols=187  Identities=12%  Similarity=0.169  Sum_probs=162.9

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC-CCeeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP-KMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~  167 (297)
                      ..+++.|+.|++ ++.+++.+..+. +|...|.+++|+  +++|++|+.|+.|++||++ ....+..+.+|...|.+++|
T Consensus       149 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  225 (401)
T 4aez_A          149 LSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW  225 (401)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE
Confidence            456788999999 899999999988 999999999994  5799999999999999998 56678889999999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      +|++++|++++.|+.|++||+++++.+..+..|..          .+..++|+|++..+++.+.     |+.|+.|++||
T Consensus       226 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----------~v~~~~~~p~~~~ll~~~~-----gs~d~~i~i~d  290 (401)
T 4aez_A          226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA----------AVKAVAWCPWQSNLLATGG-----GTMDKQIHFWN  290 (401)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS----------CCCEEEECTTSTTEEEEEC-----CTTTCEEEEEE
T ss_pred             cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc----------eEEEEEECCCCCCEEEEec-----CCCCCEEEEEE
Confidence            99999999999999999999999888887766542          2345789998876666543     55799999999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEE--EecCCCeEEEEEeCCcee
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAV--GTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~~~dg~i~vwd~~~~~~  295 (297)
                      +.+++++..+..+..|.+++|+|++++|++  |+. ||.|++||+.+++.
T Consensus       291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-dg~i~v~~~~~~~~  339 (401)
T 4aez_A          291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP-DNNLSIWSYSSSGL  339 (401)
T ss_dssp             TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT-TCEEEEEEEETTEE
T ss_pred             CCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC-CCcEEEEecCCccc
Confidence            999999999987777999999999999999  448 99999999988543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=219.70  Aligned_cols=242  Identities=10%  Similarity=0.117  Sum_probs=186.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++|+.|+.++||++........ ..       ....+                         +..+..
T Consensus        71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~-~~-------~~~~~-------------------------h~~~v~  117 (416)
T 2pm9_A           71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN-SM-------ARFSN-------------------------HSSSVK  117 (416)
T ss_dssp             EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC-EE-------EECCC-------------------------SSSCCC
T ss_pred             EEEEECCCCCeEEEEccCCeEEEeeccccccccc-ch-------hhccC-------------------------CccceE
Confidence            4667899999999999999999999875110000 00       00000                         000000


Q ss_pred             ---CCCCCCCcCCCCCCCceEEE-EeeCCC------eEEEE--ecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCC
Q psy3337          82 ---KIEDPPILNSIDSKEKNLRF-GFKTFD------SVQTV--FAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPK  148 (297)
Q Consensus        82 ---~~~~~~~l~~~~~~d~~i~~-~~~~~~------~~~~~--~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~  148 (297)
                         ...+..-+..+++.|+.|++ ++.+++      ....+  ..+|...|.+++|+|+ +.+|++++.|+.|++||+++
T Consensus       118 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          118 TVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             EEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             EEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence               00011123557888999999 888776      33332  1379999999999999 78999999999999999999


Q ss_pred             CeeeEEeccc------cCCeeEEEEccCC-CEEEEEeCCC---cEEEEEcCCC-ceeeeee-ccCCCCceEEEEeeeeee
Q psy3337         149 MKPLLHIEAH------SKEIDDVDFSISG-EQIVSIAKDG---KAFVWNSKNG-SLSKELK-WNTPDNIKYLFKRCRYGL  216 (297)
Q Consensus       149 ~~~~~~~~~~------~~~v~~~~~sp~~-~~l~s~~~d~---~v~lwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  216 (297)
                      ++.+..+..|      ...|.+++|+|++ .+|++++.|+   .|++||++++ ..+..+. .|.          ..+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~----------~~v~~  267 (416)
T 2pm9_A          198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ----------KGILS  267 (416)
T ss_dssp             TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS----------SCEEE
T ss_pred             CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc----------CceeE
Confidence            9988888876      7889999999997 6899999998   9999999986 5556565 443          12345


Q ss_pred             eeeCC-CCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCC-CEEEEEecCCCeEEEEEeCCc
Q psy3337         217 VEDSP-KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDG-RFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       217 ~~~s~-~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ++|+| ++.+|++.+        .|+.|++||+.+++++..+..|.. |.+++|+|++ .+|++++. |+.|++||+.++
T Consensus       268 ~~~s~~~~~~l~s~~--------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-d~~i~iw~~~~~  338 (416)
T 2pm9_A          268 LDWCHQDEHLLLSSG--------RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF-DNKIEVQTLQNL  338 (416)
T ss_dssp             EEECSSCSSCEEEEE--------SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS-SSEEEEEESCCC
T ss_pred             EEeCCCCCCeEEEEe--------CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec-CCcEEEEEccCC
Confidence            88999 899999854        499999999999999999988877 9999999999 89999999 999999999876


Q ss_pred             ee
Q psy3337         294 QM  295 (297)
Q Consensus       294 ~~  295 (297)
                      +.
T Consensus       339 ~~  340 (416)
T 2pm9_A          339 TN  340 (416)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=2.5e-29  Score=218.93  Aligned_cols=236  Identities=12%  Similarity=0.158  Sum_probs=177.6

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDK   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
                      ++.+++++++|++|+.|+.++||++.........            .++...-..-                       .
T Consensus       102 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~~h~~~v~~~-----------------------~  146 (420)
T 3vl1_A          102 VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID------------QAHVSEITKL-----------------------K  146 (420)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEECTTSCEEEEET------------TSSSSCEEEE-----------------------E
T ss_pred             EEEEecCCCEEEEEECCCCEEEEeCCCcceeeec------------ccccCccEEE-----------------------E
Confidence            3457889999999999999999997654322100            0000000000                       0


Q ss_pred             CCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc---
Q psy3337          83 IEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH---  158 (297)
Q Consensus        83 ~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---  158 (297)
                      ..+..-+..+++.|++|++ ++.+++.+..+. +|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|   
T Consensus       147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  225 (420)
T 3vl1_A          147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP  225 (420)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence            0000112557889999999 999999998888 99999999999999999999999999999999999988888753   


Q ss_pred             c---------------------CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeee
Q psy3337         159 S---------------------KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLV  217 (297)
Q Consensus       159 ~---------------------~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (297)
                      .                     ..+.+++|+|++++|++++.|+.|++||+++++.+..+.....         ..+..+
T Consensus       226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~  296 (420)
T 3vl1_A          226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT---------CSCNSL  296 (420)
T ss_dssp             TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS---------SCEEEE
T ss_pred             CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC---------CCceeE
Confidence            3                     3444555678999999999999999999999887766643211         124458


Q ss_pred             eeCCCCe-EEEEeccCcccccCCCCeEEEEeCCCCce-EEEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         218 EDSPKRS-RLFTLANPLAQNKRGISYVQQWDVDSGRL-RLAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       218 ~~s~~~~-~l~~~~~~~~~~g~~d~~i~~wd~~~~~~-~~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +|+|++. +|++        |+.|+.|++||+++++. +..+.. +.. |.++.+ +++++|++++. |+.|++||+...
T Consensus       297 ~~~~~~~~~l~~--------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~-d~~v~iw~~~~~  366 (420)
T 3vl1_A          297 TVDGNNANYIYA--------GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGF-DTSIKLDIISDP  366 (420)
T ss_dssp             EECSSCTTEEEE--------EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETT-TEEEEEEEECCT
T ss_pred             EEeCCCCCEEEE--------EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecC-CccEEEEeccCC
Confidence            8999998 8888        44599999999998643 566665 444 777754 57899999999 999999998763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=6.2e-29  Score=212.74  Aligned_cols=241  Identities=14%  Similarity=0.120  Sum_probs=181.2

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++++.|+.+++|++...............   ..      -....-                      
T Consensus        56 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~------v~~~~~----------------------  104 (372)
T 1k8k_C           56 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN---RA------ARCVRW----------------------  104 (372)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS---SC------EEEEEE----------------------
T ss_pred             cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC---Cc------eeEEEE----------------------
Confidence            46668899999999999999999999654321100000000   00      000000                      


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCe---EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC-----------
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDS---VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF-----------  146 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~-----------  146 (297)
                       ..+ .-...+++.|+.|++ ++..+..   ...+..+|...|.+++|+|++++|++++.|+.|++||+           
T Consensus       105 -~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          105 -APN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             -CTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             -CCC-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence             000 011456778999999 8888763   34443478999999999999999999999999999995           


Q ss_pred             -------CCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeee
Q psy3337         147 -------PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVED  219 (297)
Q Consensus       147 -------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (297)
                             ..++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..          .+..++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~v~~~~~  252 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL----------PLLAVTF  252 (372)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC----------CEEEEEE
T ss_pred             cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC----------CeEEEEE
Confidence                   36778888999999999999999999999999999999999999999888876641          2345788


Q ss_pred             CCCCeEEEEeccCcccccCCCCeEEEEeCCC--Cce--------------------------------E------EEe-c
Q psy3337         220 SPKRSRLFTLANPLAQNKRGISYVQQWDVDS--GRL--------------------------------R------LAR-E  258 (297)
Q Consensus       220 s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~--~~~--------------------------------~------~~~-~  258 (297)
                      +|++.++++.         .|+.|++|++..  ++.                                .      ..+ .
T Consensus       253 ~~~~~~l~~~---------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
T 1k8k_C          253 ITESSLVAAG---------HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS  323 (372)
T ss_dssp             EETTEEEEEE---------TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred             ecCCCEEEEE---------eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence            9999988774         389999999987  421                                0      222 3


Q ss_pred             cCCC-eEEEEEc-CCC---CEEEEEecCCCeEEEEEeCCcee
Q psy3337         259 MKES-LSALAVR-DDG---RFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       259 ~~~~-v~~~~~s-~dg---~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +|.. |.+++|+ ++|   .+|++|+. ||.|++||+.+++.
T Consensus       324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~-Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          324 LHKNSVSQISVLSGGKAKCSQFCTTGM-DGGMSIWDVRSLES  364 (372)
T ss_dssp             SSSSCEEEEEEEESTTTSCSEEEEEET-TSEEEEEEHHHHHH
T ss_pred             cccCCcceeEEecCCCcceeeEEEecC-CCceEEEEecChhH
Confidence            5665 9999976 677   99999999 99999999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-28  Score=204.12  Aligned_cols=234  Identities=12%  Similarity=0.125  Sum_probs=182.1

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++++.|+.+++|++...........         ..++.                         .+..
T Consensus        63 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~---------~~~~~-------------------------~~i~  108 (313)
T 3odt_A           63 NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT---------LIGHQ-------------------------GNVC  108 (313)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE---------ECCCS-------------------------SCEE
T ss_pred             EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc---------hhhcc-------------------------cCEE
Confidence            4566899999999999999999999865321100000         00000                         0000


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEecc-c
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEA-H  158 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~  158 (297)
                      .....+-+..+++.|+.|++ +  .++.+..+. .|...|.++.|+| ++++|++++.|+.|++||  ..+....+.. |
T Consensus       109 ~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~  183 (313)
T 3odt_A          109 SLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIH  183 (313)
T ss_dssp             EEEEETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSC
T ss_pred             EEEecCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccC
Confidence            00000112557888999999 6  667777777 9999999999999 899999999999999999  4566677776 8


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ...|.+++|+|++. |++++.|+.|++||+++++.+..+..|..          .+..++|+|++ .+++        ++
T Consensus       184 ~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~i~~~~~~~~~-~l~~--------~~  243 (313)
T 3odt_A          184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES----------FVYCIKLLPNG-DIVS--------CG  243 (313)
T ss_dssp             SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS----------CEEEEEECTTS-CEEE--------EE
T ss_pred             cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc----------eEEEEEEecCC-CEEE--------Ee
Confidence            99999999999988 99999999999999999999888876642          23457899999 5776        44


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .|+.|++||+.+++++..+..+.. |.+++|+|+++ +++++. ||.|++||+.+++.+
T Consensus       244 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          244 EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS-DNLVRIFSQEKSRWA  300 (313)
T ss_dssp             TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET-TSCEEEEESCGGGCC
T ss_pred             cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC-CCcEEEEeCCCCcee
Confidence            599999999999999999988875 99999999998 556888 999999999987654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=221.78  Aligned_cols=259  Identities=9%  Similarity=0.080  Sum_probs=183.9

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.++||++...........         ..+. .-+.....+....    .....    -..
T Consensus       115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---------~~~~-~i~~~~~~~~~~~----~~~~~----~~~  176 (437)
T 3gre_A          115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF---------LNCE-CIRKINLKNFGKN----EYAVR----MRA  176 (437)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE---------EEEE-EEEEEEGGGGSSC----CCEEE----EEE
T ss_pred             EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec---------cccc-eeEEEEccCcccc----cCceE----EEE
Confidence            4667888999999999999999999964321100000         0000 0000000000000    00000    000


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecC--CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-c
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAG--SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-A  157 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  157 (297)
                      ......-+..+++.|+.|++ ++.+++.+..+. +  |...|++++|+|++++|++|+.|+.|++||+++++++..+. .
T Consensus       177 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (437)
T 3gre_A          177 FVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE-NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG  255 (437)
T ss_dssp             EECSSCEEEEEEETTSEEEEEETTTCCEEEEEE-CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc-cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC
Confidence            00001112457888999999 999999999998 6  89999999999999999999999999999999999988886 7


Q ss_pred             ccCCeeEEEEcc----CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEE----------------Eeeeeeee
Q psy3337         158 HSKEIDDVDFSI----SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLF----------------KRCRYGLV  217 (297)
Q Consensus       158 ~~~~v~~~~~sp----~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~  217 (297)
                      |...|.+++|+|    ++.+|++++.|+.|++||+++++.+..+..|........+                ....+..+
T Consensus       256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l  335 (437)
T 3gre_A          256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI  335 (437)
T ss_dssp             TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred             CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence            888999996665    6779999999999999999999988888766411100000                12234567


Q ss_pred             eeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-------------------------------------C
Q psy3337         218 EDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-------------------------------------K  260 (297)
Q Consensus       218 ~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-------------------------------------~  260 (297)
                      +|+ ++.+|+++        +.|+.|++||+.+++....+.+                                     |
T Consensus       336 ~~~-~~~~l~s~--------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  406 (437)
T 3gre_A          336 SVS-NDKILLTD--------EATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH  406 (437)
T ss_dssp             EEE-TTEEEEEE--------GGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred             EEC-CceEEEec--------CCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence            788 77888884        4599999999999887666654                                     4


Q ss_pred             CC-eEEEEEcCC--CCEEEEEecCCCeEEEEE
Q psy3337         261 ES-LSALAVRDD--GRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       261 ~~-v~~~~~s~d--g~~l~~~~~~dg~i~vwd  289 (297)
                      .. |.+++|+++  +.+|++|+. ||.|+||+
T Consensus       407 ~~~I~~i~~~~~~~~~~l~s~~~-dG~I~iw~  437 (437)
T 3gre_A          407 HDIINSISTCEVDETPLLVACDN-SGLIGIFQ  437 (437)
T ss_dssp             CCCEEEEEEEESSSSEEEEEEET-TSCEEEEC
T ss_pred             ccceeeEeeeccCCceEEEEEcC-CceEEEeC
Confidence            44 999999998  789999999 99999994

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=5.8e-29  Score=215.23  Aligned_cols=247  Identities=12%  Similarity=0.166  Sum_probs=176.9

Q ss_pred             cceeeeC-CCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSN-GKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~-~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|++ ++++|++++.|+.+++|++...............            ...                  .-.  
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~------------------~~~--  150 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETV------------YSH------------------HMS--  150 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCE------------EEE------------------EEC--
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCce------------eee------------------Eee--
Confidence            3455777 7789999999999999998654322100000000            000                  000  


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCe-eeEEe--
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMK-PLLHI--  155 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~-~~~~~--  155 (297)
                       .......+..+++.|+.|++ ++.+++.+..+. +|...|.+++|+|+++ +|++|+.|+.|++||++++. .+..+  
T Consensus       151 -~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~  228 (408)
T 4a11_B          151 -PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ  228 (408)
T ss_dssp             -SSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred             -cCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence             00000112457788999999 999999888888 9999999999999998 58999999999999998765 34444  


Q ss_pred             -------------ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC
Q psy3337         156 -------------EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK  222 (297)
Q Consensus       156 -------------~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  222 (297)
                                   ..|...|.+++|+|++++|++++.|+.|++||+.+++....+..+.......     ..........
T Consensus       229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  303 (408)
T 4a11_B          229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK-----GLKFTVSCGC  303 (408)
T ss_dssp             TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS-----CCCCEECCSS
T ss_pred             cccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc-----cceeEEecCC
Confidence                         5788999999999999999999999999999999887665544332110000     0000111222


Q ss_pred             CeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         223 RSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       223 ~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +..+++...        ++.|++||+.+++++..+.+|.. |.+++|+|++++|++++. ||.|++||+.+++++
T Consensus       304 ~~~~~~~~~--------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          304 SSEFVFVPY--------GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR-DCNILAWVPSLYEPV  369 (408)
T ss_dssp             SSCEEEEEE--------TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET-TSCEEEEEECC----
T ss_pred             CceEEEEec--------CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC-CCeEEEEeCCCCCcc
Confidence            334444333        89999999999999999998877 999999999999999999 999999999988765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.6e-28  Score=213.20  Aligned_cols=189  Identities=16%  Similarity=0.172  Sum_probs=159.1

Q ss_pred             CCCCCCCceEEE-EeeCC-------CeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEe--ccc
Q psy3337          90 NSIDSKEKNLRF-GFKTF-------DSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHI--EAH  158 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~-------~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~  158 (297)
                      ..+++.|++|++ ++.++       +.+..+. +|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..|
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence            557889999999 88887       5677777 999999999999998 79999999999999999999999999  889


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL-KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|...         .+..+.|+|++.+|++...     +
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~g~~-----~  241 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT---------RPVHAVFVSEGKILTTGFS-----R  241 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS---------SCCEEEECSTTEEEEEEEC-----T
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC---------cceEEEEcCCCcEEEEecc-----C
Confidence            999999999999999999999999999999999888887 455421         1234678999998888522     2


Q ss_pred             CCCCeEEEEeCCCCce-E--EEeccCCCeEEEEEcCCCCEEEE-EecCCCeEEEEEeCCce
Q psy3337         238 RGISYVQQWDVDSGRL-R--LAREMKESLSALAVRDDGRFVAV-GTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~-~--~~~~~~~~v~~~~~s~dg~~l~~-~~~~dg~i~vwd~~~~~  294 (297)
                      +.++.|++||+++++. +  ..+.....+.+++|+|++.+|++ |+. ||.|++||+.+++
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~-dg~i~i~d~~~~~  301 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG-DSSIRYFEITSEA  301 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT-CSCEEEEEECSST
T ss_pred             CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC-CCeEEEEEecCCC
Confidence            5699999999998653 2  33334455999999999999864 557 9999999999876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=218.60  Aligned_cols=193  Identities=16%  Similarity=0.267  Sum_probs=157.8

Q ss_pred             CCCCCCCceEEE-EeeC----CCeEEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCe------eeE---E
Q psy3337          90 NSIDSKEKNLRF-GFKT----FDSVQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMK------PLL---H  154 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~----~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~------~~~---~  154 (297)
                      ..+++.|+.|++ ++.+    .+.+..+. +|...|++++|+|+ +++|++++.|+.|++||+.+++      ...   .
T Consensus        82 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  160 (416)
T 2pm9_A           82 IAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ  160 (416)
T ss_dssp             EEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred             EEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence            456788999999 7776    34667776 99999999999998 8999999999999999998876      332   3


Q ss_pred             eccccCCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCC-eEEEEeccC
Q psy3337         155 IEAHSKEIDDVDFSIS-GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKR-SRLFTLANP  232 (297)
Q Consensus       155 ~~~~~~~v~~~~~sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~  232 (297)
                      +..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+.+..    -....+..++|+|++ .++++.+  
T Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~--  234 (416)
T 2pm9_A          161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS----GIKQQLSVVEWHPKNSTRVATAT--  234 (416)
T ss_dssp             SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----CCCCCEEEEEECSSCTTEEEEEE--
T ss_pred             ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----ccCCceEEEEECCCCCCEEEEEE--
Confidence            4678999999999998 7899999999999999999998888876653110    001234458899997 5677744  


Q ss_pred             cccccCCCC---eEEEEeCCCC-ceEEEec-cCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         233 LAQNKRGIS---YVQQWDVDSG-RLRLARE-MKES-LSALAVRD-DGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       233 ~~~~g~~d~---~i~~wd~~~~-~~~~~~~-~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                            .++   .|++||++++ +++..+. .|.. |.+++|+| ++.+|++++. ||.|++||+.+++++
T Consensus       235 ------~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          235 ------GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNPESAEQL  298 (416)
T ss_dssp             ------CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEEEEECSSSCCEE
T ss_pred             ------CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeCCCCccc
Confidence                  477   9999999986 6667777 6666 99999999 9999999999 999999999988764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.3e-29  Score=218.90  Aligned_cols=243  Identities=10%  Similarity=0.120  Sum_probs=178.9

Q ss_pred             cceeeeC-CCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSN-GKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~-~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|++ ++.+|++|+.|+.++||++.......   .   .   +.      .....                 +..+.
T Consensus        67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~---~---~---~~------~~~~~-----------------h~~~v  114 (437)
T 3gre_A           67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE---V---Y---SS------SLTYD-----------------CSSTV  114 (437)
T ss_dssp             EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC---C---C---SC------SEEEE-----------------CSSCE
T ss_pred             EEEEECCCCCCEEEEecCCceEEEeECcccccCc---c---c---ce------eeecc-----------------CCCCE
Confidence            5677888 89999999999999999986521000   0   0   00      00000                 00000


Q ss_pred             C--CCCCCCCcCCCCCCCceEEE-Eee---CCCeEEEEe---------cC--CCCcEEEEE--EecCCCEEEEEcCCCcE
Q psy3337          81 D--KIEDPPILNSIDSKEKNLRF-GFK---TFDSVQTVF---------AG--SESLQRVVR--LSRNGDLMVTGGTDGHL  141 (297)
Q Consensus        81 ~--~~~~~~~l~~~~~~d~~i~~-~~~---~~~~~~~~~---------~~--h~~~v~~~~--~s~~g~~l~s~~~d~~i  141 (297)
                      .  ...+..-+..+++.|++|++ ++.   +++....+.         ..  +...+.++.  +++++++|++|+.|+.|
T Consensus       115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  194 (437)
T 3gre_A          115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV  194 (437)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeE
Confidence            0  00001112457889999999 774   665554433         01  455666776  55789999999999999


Q ss_pred             EEEeCCCCeeeEEecc--ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-ccCCCCceEEEEeeeeeee-
Q psy3337         142 RLWSFPKMKPLLHIEA--HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK-WNTPDNIKYLFKRCRYGLV-  217 (297)
Q Consensus       142 ~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  217 (297)
                      ++||+++++.+..+..  |...|++++|+|++++|++++.|+.|++||+++++.+..+. .+.    .      .+..+ 
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~------~v~~~~  264 (437)
T 3gre_A          195 IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH----A------PITHVE  264 (437)
T ss_dssp             EEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC----E------EEEEEE
T ss_pred             EEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC----C------ceEEEE
Confidence            9999999999999988  89999999999999999999999999999999998888775 332    1      12234 


Q ss_pred             ---eeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC--------------------------CC-eEEEE
Q psy3337         218 ---EDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK--------------------------ES-LSALA  267 (297)
Q Consensus       218 ---~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~--------------------------~~-v~~~~  267 (297)
                         .|+|++.+|++        |+.|+.|++||+++++++..+..+                          .. |.+++
T Consensus       265 ~~~~~s~~~~~l~s--------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~  336 (437)
T 3gre_A          265 VCQFYGKNSVIVVG--------GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS  336 (437)
T ss_dssp             ECTTTCTTEEEEEE--------ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred             eccccCCCccEEEE--------EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence               45678888888        555999999999999988777643                          22 88899


Q ss_pred             EcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         268 VRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       268 ~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |+ ++++|++|+. |+.|++||+.+++.+
T Consensus       337 ~~-~~~~l~s~~~-d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          337 VS-NDKILLTDEA-TSSIVMFSLNELSSS  363 (437)
T ss_dssp             EE-TTEEEEEEGG-GTEEEEEETTCGGGC
T ss_pred             EC-CceEEEecCC-CCeEEEEECCCcccc
Confidence            99 7799999999 999999999988754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.8e-28  Score=207.33  Aligned_cols=185  Identities=11%  Similarity=0.013  Sum_probs=146.9

Q ss_pred             CCCCCCCceEEE-Eee---------CCCeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCeeeEEec-
Q psy3337          90 NSIDSKEKNLRF-GFK---------TFDSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMKPLLHIE-  156 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~---------~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-  156 (297)
                      ..+++.|++|++ +..         +++.+..+..+|...|.+++|+|  ++++|++++.|+.|++||+++++.+..+. 
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            457888999998 443         44545555557888999999999  99999999999999999999998876664 


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-eeeec-cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS-KELKW-NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      .|...|.+++|+|++.+|++|+.|+.|++||+++++.+ ..+.. |.          ..+..++|+|++.+|++.+    
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~----------~~v~~l~fs~~g~~l~s~~----  233 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE----------AKIKEVKFADNGYWMVVEC----  233 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT----------SCEEEEEECTTSSEEEEEE----
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC----------CCEEEEEEeCCCCEEEEEe----
Confidence            34558999999999999999999999999999998877 66765 53          2344588999999999844    


Q ss_pred             cccCCCCeEEEEeCCCCceEEEecc---CCC-e--EEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAREM---KES-L--SALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~~---~~~-v--~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                           ++.|++||+++++.+..+..   +.. +  .+++|+|+|++|++++..|+.|++|++.+.
T Consensus       234 -----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          234 -----DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -----SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             -----CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence                 34999999999876655443   222 3  369999999999997754889999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=6e-29  Score=211.54  Aligned_cols=191  Identities=15%  Similarity=0.201  Sum_probs=149.3

Q ss_pred             CCCCCCCceEEE-EeeCCC-eEEEEecCCCC----cEEEEE----EecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          90 NSIDSKEKNLRF-GFKTFD-SVQTVFAGSES----LQRVVR----LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~-~~~~~~~~h~~----~v~~~~----~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                      ..+++.|+.|++ ++.+++ .+..+. .|..    .|.+++    |+|++++|++++.|+.|++||+++++.... ..|.
T Consensus       132 l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~  209 (357)
T 3i2n_A          132 IVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIK  209 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECS
T ss_pred             EEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCC
Confidence            457888999999 888876 566665 4443    789998    788999999999999999999999887544 5688


Q ss_pred             CCeeEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCccc
Q psy3337         160 KEIDDVDFSI---SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQ  235 (297)
Q Consensus       160 ~~v~~~~~sp---~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~  235 (297)
                      ..|.+++|+|   ++.+|++++.|+.|++||+++++.+..+....     .......+..++|+|++. ++++       
T Consensus       210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~-------  277 (357)
T 3i2n_A          210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS-----EKAHKSTVWQVRHLPQNRELFLT-------  277 (357)
T ss_dssp             SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE-----EECCSSCEEEEEEETTEEEEEEE-------
T ss_pred             CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec-----cCCCcCCEEEEEECCCCCcEEEE-------
Confidence            9999999999   99999999999999999998766554443110     001112345688999998 6777       


Q ss_pred             ccCCCCeEEEEeCCCC-------------------ceEEEeccCCC-eEEEEEcCCCCEEE-EEecCCCeEEEEEeCCce
Q psy3337         236 NKRGISYVQQWDVDSG-------------------RLRLAREMKES-LSALAVRDDGRFVA-VGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~-------------------~~~~~~~~~~~-v~~~~~s~dg~~l~-~~~~~dg~i~vwd~~~~~  294 (297)
                       |+.|+.|++||++.+                   +.+..+..|.. |.+++|+|++++|+ +++. ||.|++||+.+++
T Consensus       278 -~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~-d~~i~iw~~~~~~  355 (357)
T 3i2n_A          278 -AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF-DQTVRVLIVTKLN  355 (357)
T ss_dssp             -EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET-TSEEEEEEECC--
T ss_pred             -EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC-CCcEEEEECCCcc
Confidence             445999999999753                   35667777776 99999999999998 7999 9999999999887


Q ss_pred             ec
Q psy3337         295 MC  296 (297)
Q Consensus       295 ~~  296 (297)
                      .|
T Consensus       356 ~i  357 (357)
T 3i2n_A          356 KI  357 (357)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.3e-27  Score=205.15  Aligned_cols=191  Identities=15%  Similarity=0.187  Sum_probs=143.0

Q ss_pred             CCCCCCceEEE-EeeCCCeE-EEEe-------cCCCCcEEEEEEecCCCEEEE--EcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSV-QTVF-------AGSESLQRVVRLSRNGDLMVT--GGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~-~~~~-------~~h~~~v~~~~~s~~g~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                      .+++.|+.+++ +..+.... ....       ..+...+.+++|||||++|++  ++.|++|+|||+++++++..+. |.
T Consensus        98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~  176 (365)
T 4h5i_A           98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TR  176 (365)
T ss_dssp             HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CS
T ss_pred             EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CC
Confidence            35677889999 66654322 1111       135667999999999998764  4578999999999999988886 77


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      ..|.+++|+|++++|++++.+ .+.+|+..++..+.......+        ...+..++|+|++..+++++.    .+..
T Consensus       177 ~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~--------~~~v~~v~fspdg~~l~~~s~----d~~~  243 (365)
T 4h5i_A          177 GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDK--------NWSLSKINFIADDTVLIAASL----KKGK  243 (365)
T ss_dssp             SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCT--------TEEEEEEEEEETTEEEEEEEE----SSSC
T ss_pred             CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCC--------CCCEEEEEEcCCCCEEEEEec----CCcc
Confidence            889999999999999998855 567777777766544322111        122445889999999998765    0122


Q ss_pred             CCeEEEEeCCCCce----EEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRL----RLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~----~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ...+++|++.....    ...+..|.. |++++|+|||++|++|+. |++|+|||+.+++++
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-DNSIALVKLKDLSMS  304 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-TSCEEEEETTTTEEE
T ss_pred             eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-CCEEEEEECCCCcEE
Confidence            23788999877543    334556655 999999999999999999 999999999998875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-29  Score=225.07  Aligned_cols=183  Identities=7%  Similarity=-0.074  Sum_probs=145.2

Q ss_pred             CCCCCCCceEEE-EeeCCC-eEEEEecCCCCcEEEE--EEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccC--Ce
Q psy3337          90 NSIDSKEKNLRF-GFKTFD-SVQTVFAGSESLQRVV--RLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK--EI  162 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~-~~~~~~~~h~~~v~~~--~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v  162 (297)
                      ..+++.|++|++ |+.++. ....+. +|...|+++  +|+|++ ++|++|+.|++|+|||+++++++..+.+|..  .|
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v  358 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL  358 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence            568999999999 888764 344566 999999999  578888 8999999999999999998887777777754  58


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      .+++|+|++..|++++.|++|++||++++..+..+..|.          ..+..++|+|+++.|++++        .|++
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~----------~~V~sva~Sp~g~~l~Sgs--------~Dgt  420 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE----------TTITAIGVSRLHPMVLAGS--------ADGS  420 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS----------SCEEEEECCSSCCBCEEEE--------TTTE
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC----------CceEEEEeCCCCCeEEEEE--------CCCE
Confidence            899999999999999999999999999998877777765          2344588999999998844        4777


Q ss_pred             EEEEeCCC--------------------------------------------CceEEEeccCCC-eEEEEEcCCCC---E
Q psy3337         243 VQQWDVDS--------------------------------------------GRLRLAREMKES-LSALAVRDDGR---F  274 (297)
Q Consensus       243 i~~wd~~~--------------------------------------------~~~~~~~~~~~~-v~~~~~s~dg~---~  274 (297)
                      |++||+..                                            +.++..+.+|.. |.+++|+|++.   +
T Consensus       421 v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~  500 (524)
T 2j04_B          421 LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKC  500 (524)
T ss_dssp             EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTE
T ss_pred             EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHH
Confidence            77776432                                            112233344555 89999999954   9


Q ss_pred             EEEEecCCCeEEEEEeCC
Q psy3337         275 VAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       275 l~~~~~~dg~i~vwd~~~  292 (297)
                      |++|+. ||.|+||++.-
T Consensus       501 lAsg~~-~g~vrlw~l~~  517 (524)
T 2j04_B          501 YAFSNS-AGLLTLEYLSL  517 (524)
T ss_dssp             EEEECT-TSEEEEEECSC
T ss_pred             HHhhcc-CceEEEEEccc
Confidence            999999 99999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=5.8e-28  Score=201.39  Aligned_cols=184  Identities=15%  Similarity=0.223  Sum_probs=151.4

Q ss_pred             CCCCCCCceEEE-EeeC--CCeEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCe--eeEEeccccCCe
Q psy3337          90 NSIDSKEKNLRF-GFKT--FDSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMK--PLLHIEAHSKEI  162 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~--~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v  162 (297)
                      ..+++.|++|++ ++.+  .+.+.++. +|.+.|++++|+|+  +++|++|+.|++|++||+++++  .+..+..|...|
T Consensus        24 las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v  102 (297)
T 2pm7_B           24 MATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV  102 (297)
T ss_dssp             EEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCE
T ss_pred             EEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCce
Confidence            567889999999 7764  35677777 99999999999863  8999999999999999998774  566788899999


Q ss_pred             eEEEEccC--CCEEEEEeCCCcEEEEEcCCCce--eeeeeccCCCCceEEEEeeeeeeeeeCCC-------------CeE
Q psy3337         163 DDVDFSIS--GEQIVSIAKDGKAFVWNSKNGSL--SKELKWNTPDNIKYLFKRCRYGLVEDSPK-------------RSR  225 (297)
Q Consensus       163 ~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------~~~  225 (297)
                      .+++|+|+  +.+|++++.|++|++||++++..  ...+..|.          ..+..++|+|+             +.+
T Consensus       103 ~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~----------~~v~~~~~~p~~~~~~~~~~~~~~~~~  172 (297)
T 2pm7_B          103 NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRK  172 (297)
T ss_dssp             EEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS----------SCEEEEEECCCC------------CCE
T ss_pred             eEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc----------CccceEeecCCcccccccCCCCCCcce
Confidence            99999997  88999999999999999986532  23344443          12345778886             456


Q ss_pred             EEEeccCcccccCCCCeEEEEeCCCCc----eEEEeccCCC-eEEEEEcCCC---CEEEEEecCCCeEEEEEeCCc
Q psy3337         226 LFTLANPLAQNKRGISYVQQWDVDSGR----LRLAREMKES-LSALAVRDDG---RFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~wd~~~~~----~~~~~~~~~~-v~~~~~s~dg---~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      |++        |+.|+.|++||+++++    +...+.+|.. |.+++|+|++   .+|++++. |++|+|||+.+.
T Consensus       173 l~s--------gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~-D~~v~iWd~~~~  239 (297)
T 2pm7_B          173 FVT--------GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ-DRTCIIWTQDNE  239 (297)
T ss_dssp             EEE--------EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-TSCEEEEEESST
T ss_pred             EEE--------EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC-CCcEEEEEeCCC
Confidence            777        5569999999998765    5667888877 9999999985   89999999 999999999764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-27  Score=210.25  Aligned_cols=184  Identities=12%  Similarity=0.094  Sum_probs=156.0

Q ss_pred             CCcCCCCCCCceEEE-Eee--CCCeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE----Eeccc
Q psy3337          87 PILNSIDSKEKNLRF-GFK--TFDSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL----HIEAH  158 (297)
Q Consensus        87 ~~l~~~~~~d~~i~~-~~~--~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~  158 (297)
                      ..|..+++.|++|++ ++.  +++.+..+. ..|...|++++|+|++++|++|+.++.|++|++.+++...    .+.+|
T Consensus       115 ~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h  194 (450)
T 2vdu_B          115 SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH  194 (450)
T ss_dssp             SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC
T ss_pred             CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc
Confidence            334467888999999 888  888888776 3577899999999999999999999999999998776544    77889


Q ss_pred             cCCeeEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeee-eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         159 SKEIDDVDFSIS---GEQIVSIAKDGKAFVWNSKNGSLSKE-LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       159 ~~~v~~~~~sp~---~~~l~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      ...|.+++|+|+   +++|++++.|+.|++||+++++.+.. +..|.          ..+..++|+ ++.+|++++    
T Consensus       195 ~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~----------~~v~~~~~s-d~~~l~s~~----  259 (450)
T 2vdu_B          195 VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK----------HFVSSICCG-KDYLLLSAG----  259 (450)
T ss_dssp             SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS----------SCEEEEEEC-STTEEEEEE----
T ss_pred             cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC----------CceEEEEEC-CCCEEEEEe----
Confidence            999999999999   99999999999999999999887776 33443          123457889 999999854    


Q ss_pred             cccCCCCeEEEEeCCCCceEEEeccC--------------------------CCeEEEEEcCCCCEEEEEe-cCCCeEEE
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAREMK--------------------------ESLSALAVRDDGRFVAVGT-MFTGSVFV  287 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~~~--------------------------~~v~~~~~s~dg~~l~~~~-~~dg~i~v  287 (297)
                          .|+.|++||+.+++++..+..+                          ..|.+++|+|++++|++++ . |+.|++
T Consensus       260 ----~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-d~~i~i  334 (450)
T 2vdu_B          260 ----GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA-TKCIII  334 (450)
T ss_dssp             ----SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT-CSEEEE
T ss_pred             ----CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC-CCeEEE
Confidence                4999999999999988877532                          2389999999999999999 7 999999


Q ss_pred             EEe
Q psy3337         288 YIA  290 (297)
Q Consensus       288 wd~  290 (297)
                      |++
T Consensus       335 w~~  337 (450)
T 2vdu_B          335 LEM  337 (450)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            999

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=8.2e-29  Score=217.35  Aligned_cols=161  Identities=17%  Similarity=0.155  Sum_probs=129.6

Q ss_pred             CCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEecc--ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy3337         115 GSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEA--HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       115 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~  191 (297)
                      +|.+.|++++|+| ++++|++|+.|++|++||++++........  +...+.+++|+|++.+|++|+.|+.|++||++ +
T Consensus       162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~  240 (435)
T 4e54_B          162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-G  240 (435)
T ss_dssp             SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-S
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-c
Confidence            8999999999998 689999999999999999987654333332  34467899999999999999999999999985 4


Q ss_pred             ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeE-EEEeccCcccccCCCCeEEEEeCCCCceEEE---eccCCC-eEEE
Q psy3337         192 SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSR-LFTLANPLAQNKRGISYVQQWDVDSGRLRLA---REMKES-LSAL  266 (297)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~---~~~~~~-v~~~  266 (297)
                      +.+..+..|.          ..+..++|+|++.. +++        |+.|+.|++||+++.+....   ...|.. |.++
T Consensus       241 ~~~~~~~~h~----------~~v~~v~~~p~~~~~~~s--------~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  302 (435)
T 4e54_B          241 KELWNLRMHK----------KKVTHVALNPCCDWFLAT--------ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA  302 (435)
T ss_dssp             CBCCCSBCCS----------SCEEEEEECTTCSSEEEE--------EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC
T ss_pred             ceeEEEeccc----------ceEEeeeecCCCceEEEE--------ecCcceeeEEecccccccceEEEeeeccccccce
Confidence            5566666664          12345889999874 555        45599999999988654333   234555 9999


Q ss_pred             EEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         267 AVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       267 ~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +|+|+|.+|++++. ||.|+|||+.+++.
T Consensus       303 ~~spdg~~l~s~~~-D~~i~iwd~~~~~~  330 (435)
T 4e54_B          303 CFSPDGARLLTTDQ-KSEIRVYSASQWDC  330 (435)
T ss_dssp             CBCTTSSEEEEEES-SSCEEEEESSSSSS
T ss_pred             eECCCCCeeEEEcC-CCEEEEEECCCCcc
Confidence            99999999999999 99999999988654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-27  Score=203.53  Aligned_cols=239  Identities=13%  Similarity=0.069  Sum_probs=186.4

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++++.|+.++||++........  .          .++...-...                     . 
T Consensus        36 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~----------~~h~~~v~~~---------------------~-   81 (369)
T 3zwl_B           36 TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT--L----------DGHTGTIWSI---------------------D-   81 (369)
T ss_dssp             EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE--E----------CCCSSCEEEE---------------------E-
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh--h----------hhcCCcEEEE---------------------E-
Confidence            5677999999999999999999998754322110  0          0000000000                     0 


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC-----CcEEEEeCCCCe-----
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD-----GHLRLWSFPKMK-----  150 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~-----  150 (297)
                      ...+ .-+..+++.|+.|++ ++.+++.+..+.  |...|.+++|+|++++|++++.+     +.|++||+....     
T Consensus        82 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~  158 (369)
T 3zwl_B           82 VDCF-TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL  158 (369)
T ss_dssp             ECTT-SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred             EcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence            0000 111457788999999 999999888875  78889999999999999999999     999999986543     


Q ss_pred             ------eeEEeccccC--CeeEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCC
Q psy3337         151 ------PLLHIEAHSK--EIDDVDFSISGEQIVSIAKDGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSP  221 (297)
Q Consensus       151 ------~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  221 (297)
                            .+..+..|..  .+.+++|+|++++|++++.|+.|++||+++ +..+..+..|.          ..+..++|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~v~~~~~~~  228 (369)
T 3zwl_B          159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE----------KSISDMQFSP  228 (369)
T ss_dssp             EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS----------SCEEEEEECT
T ss_pred             cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC----------CceeEEEECC
Confidence                  3445556666  899999999999999999999999999998 67777776654          1234578999


Q ss_pred             CCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC--------------eEEE
Q psy3337         222 KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--------------SVFV  287 (297)
Q Consensus       222 ~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg--------------~i~v  287 (297)
                      ++.+|++++.        |+.|++||+.+++.+..+.....+.+++|+|+++++++++. ++              .+++
T Consensus       229 ~~~~l~~~~~--------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~  299 (369)
T 3zwl_B          229 DLTYFITSSR--------DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGG-QEAKDVTTTSANEGKFEARF  299 (369)
T ss_dssp             TSSEEEEEET--------TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC-CC-------------CEEEE
T ss_pred             CCCEEEEecC--------CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeec-CCCceEEEEecCCCcceeEE
Confidence            9999998554        99999999999999999987667999999999999999998 88              8999


Q ss_pred             EEeCCceec
Q psy3337         288 YIAFSLQMC  296 (297)
Q Consensus       288 wd~~~~~~~  296 (297)
                      ||+.+++.+
T Consensus       300 ~d~~~~~~~  308 (369)
T 3zwl_B          300 YHKIFEEEI  308 (369)
T ss_dssp             EETTTCCEE
T ss_pred             EecCCCcch
Confidence            999887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=2.2e-28  Score=208.06  Aligned_cols=183  Identities=13%  Similarity=0.153  Sum_probs=149.8

Q ss_pred             CCCCCCCceEEE-EeeCCC-eEEEEecCCCCcEEEEEE------ecCCCEEEEEcCCCcEEEEeCCCCe-eeEEeccccC
Q psy3337          90 NSIDSKEKNLRF-GFKTFD-SVQTVFAGSESLQRVVRL------SRNGDLMVTGGTDGHLRLWSFPKMK-PLLHIEAHSK  160 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~-~~~~~~~~h~~~v~~~~~------s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  160 (297)
                      ..+++.|+.|++ ++.+++ .+..+. +|...|.++.|      +|++++|++++.|+.|++||+++++ .+..+..|..
T Consensus        83 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  161 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG  161 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred             EEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence            557888999999 888887 777777 99999999955      6899999999999999999999876 6777766654


Q ss_pred             ----CeeEEE----EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC---CCeEEEEe
Q psy3337         161 ----EIDDVD----FSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP---KRSRLFTL  229 (297)
Q Consensus       161 ----~v~~~~----~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~  229 (297)
                          .+.+++    |+|++++|++++.|+.|++||+++++...... +.          ..+..++|+|   ++.+++++
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~----------~~v~~~~~~~~~~~~~~l~~~  230 (357)
T 3i2n_A          162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-IK----------NGVCSLEFDRKDISMNKLVAT  230 (357)
T ss_dssp             SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-CS----------SCEEEEEESCSSSSCCEEEEE
T ss_pred             CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-CC----------CceEEEEcCCCCCCCCEEEEE
Confidence                788998    78899999999999999999999887654432 21          2244578999   89999985


Q ss_pred             ccCcccccCCCCeEEEEeCCCCceEEEec-----cCCC-eEEEEEcCCCC-EEEEEecCCCeEEEEEeCCc
Q psy3337         230 ANPLAQNKRGISYVQQWDVDSGRLRLARE-----MKES-LSALAVRDDGR-FVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~-----~~~~-v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +        .|+.|++||+++++.+..+.     .|.. |.+++|+|++. +|++++. ||.|++||+.++
T Consensus       231 ~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~  292 (357)
T 3i2n_A          231 S--------LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYEYP  292 (357)
T ss_dssp             E--------STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEEEECC
T ss_pred             C--------CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEeecCCC
Confidence            4        49999999998865443333     6665 99999999998 8999999 999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=1.3e-27  Score=211.13  Aligned_cols=182  Identities=21%  Similarity=0.278  Sum_probs=158.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCee---------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMKP---------------  151 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~---------------  151 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|.+++|++  ++++|++|+.|+.|++||++++..               
T Consensus       176 l~s~s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             EEEEeCCCCEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence            568899999999 999999988888 9999999999994  778999999999999999987652               


Q ss_pred             --------eEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCC
Q psy3337         152 --------LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKR  223 (297)
Q Consensus       152 --------~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  223 (297)
                              +..+.+|...|.++  ++++++|++++.|+.|++||+++++.+..+..|..          .+..++|+|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----------~v~~~~~~~~~  322 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD----------RIYSTIYDHER  322 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS----------CEEEEEEETTT
T ss_pred             ccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC----------CEEEEEEcCCC
Confidence                    45677888888877  57788999999999999999999999888877642          23357789999


Q ss_pred             eEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         224 SRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       224 ~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .+++++        +.|+.|++||+.+++++..+.+|.. |.+++|+  +.+|++++. ||.|++||+.+++.
T Consensus       323 ~~l~sg--------~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg~v~vwd~~~~~~  384 (464)
T 3v7d_B          323 KRCISA--------SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA-DGSIRGWDANDYSR  384 (464)
T ss_dssp             TEEEEE--------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCE
T ss_pred             CEEEEE--------eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC-CCcEEEEECCCCce
Confidence            999984        4599999999999999999998877 9999997  589999999 99999999988654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.7e-27  Score=208.76  Aligned_cols=246  Identities=11%  Similarity=0.115  Sum_probs=179.8

Q ss_pred             CcceeeeCC-CccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           1 MNCDVHSNG-KNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         1 ~~~~~~~~~-~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      ++|+.|++. +.+|++++.|+.++||++........      .      .+.               .+.......+..+
T Consensus       131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------~------~~~---------------~~~~~~~~~h~~~  183 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------P------SGE---------------CQPDLRLRGHQKE  183 (430)
T ss_dssp             CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------T------TCC---------------CCCSEEEECCSSC
T ss_pred             EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------c------ccc---------------CCCcEEecCCCCC
Confidence            466778886 67888889999999999965321100      0      000               0000000001111


Q ss_pred             CCCCC---CCCCcCCCCCCCceEEE-EeeCCCe-------EEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCC
Q psy3337          80 KDKIE---DPPILNSIDSKEKNLRF-GFKTFDS-------VQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFP  147 (297)
Q Consensus        80 ~~~~~---~~~~l~~~~~~d~~i~~-~~~~~~~-------~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~  147 (297)
                      .....   ..+-+..+++.|+.|++ ++.++..       ...+. +|...|.+++|+| ++.+|++++.|+.|++||++
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            11111   11113557888999999 7776322       23444 8999999999999 67899999999999999998


Q ss_pred             CC---eeeEEeccccCCeeEEEEccCCC-EEEEEeCCCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCC
Q psy3337         148 KM---KPLLHIEAHSKEIDDVDFSISGE-QIVSIAKDGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK  222 (297)
Q Consensus       148 ~~---~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  222 (297)
                      ++   +.+..+..|...|++++|+|++. +|++++.|+.|++||+++ ...+..+..|.          ..+..++|+|+
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~----------~~v~~i~~sp~  332 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK----------DEIFQVQWSPH  332 (430)
T ss_dssp             CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS----------SCEEEEEECSS
T ss_pred             CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC----------CCEEEEEECCC
Confidence            76   57778889999999999999887 688999999999999987 45667776654          22445889999


Q ss_pred             CeE-EEEeccCcccccCCCCeEEEEeCCC--------------CceEEEeccCCC-eEEEEEcCCCC-EEEEEecCCCeE
Q psy3337         223 RSR-LFTLANPLAQNKRGISYVQQWDVDS--------------GRLRLAREMKES-LSALAVRDDGR-FVAVGTMFTGSV  285 (297)
Q Consensus       223 ~~~-l~~~~~~~~~~g~~d~~i~~wd~~~--------------~~~~~~~~~~~~-v~~~~~s~dg~-~l~~~~~~dg~i  285 (297)
                      +.. |++        ++.|+.|++||+..              .+.+..+.+|.. |.+++|+|++. +|++++. ||.|
T Consensus       333 ~~~~l~s--------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-dg~i  403 (430)
T 2xyi_A          333 NETILAS--------SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-DNIM  403 (430)
T ss_dssp             CTTEEEE--------EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-TSEE
T ss_pred             CCCEEEE--------EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-CCCE
Confidence            964 666        44599999999987              366777777776 99999999999 8999999 9999


Q ss_pred             EEEEeCCc
Q psy3337         286 FVYIAFSL  293 (297)
Q Consensus       286 ~vwd~~~~  293 (297)
                      +||++...
T Consensus       404 ~iw~~~~~  411 (430)
T 2xyi_A          404 QVWQMAEN  411 (430)
T ss_dssp             EEEEECHH
T ss_pred             EEeEcccc
Confidence            99998653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=1.2e-27  Score=206.19  Aligned_cols=161  Identities=14%  Similarity=0.151  Sum_probs=136.0

Q ss_pred             CCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEecc---ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy3337         115 GSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEA---HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       115 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      +|...|.+++|+| ++++|++++.|+.|++||+.+ ..+..+..   |...|.+++|+|++++|++++.|+.|++||+ +
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~  193 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-D  193 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-T
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-C
Confidence            7999999999999 779999999999999999985 44555544   3478999999999999999999999999999 5


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe-EEEEeccCcccccCCCCeEEEEeCCC----CceEEEeccCCCeEE
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS-RLFTLANPLAQNKRGISYVQQWDVDS----GRLRLAREMKESLSA  265 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~~~g~~d~~i~~wd~~~----~~~~~~~~~~~~v~~  265 (297)
                      ++.+..+..|.          ..+..++|+|++. +++++        +.|+.|++||+++    +.++..+.....|.+
T Consensus       194 ~~~~~~~~~h~----------~~v~~~~~~~~~~~~l~s~--------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  255 (383)
T 3ei3_B          194 GHEIFKEKLHK----------AKVTHAEFNPRCDWLMATS--------SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA  255 (383)
T ss_dssp             SCEEEEEECSS----------SCEEEEEECSSCTTEEEEE--------ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEE
T ss_pred             CCEEEEeccCC----------CcEEEEEECCCCCCEEEEE--------eCCCEEEEEeCCCCCcccceEEEecCCCceEE
Confidence            67777777664          1234588999998 78874        4599999999998    667777754445999


Q ss_pred             EEEcC-CCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         266 LAVRD-DGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       266 ~~~s~-dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++|+| ++.+|++++. |+.|++||+.+++.+
T Consensus       256 ~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~~~  286 (383)
T 3ei3_B          256 AYFNPTDSTKLLTTDQ-RNEIRVYSSYDWSKP  286 (383)
T ss_dssp             EEECTTTSCEEEEEES-SSEEEEEETTBTTSC
T ss_pred             EEEcCCCCCEEEEEcC-CCcEEEEECCCCccc
Confidence            99999 9999999999 999999999887653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2e-28  Score=207.32  Aligned_cols=239  Identities=8%  Similarity=-0.003  Sum_probs=177.3

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcc-cccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKR-KEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|+.|++++++|++++.|+.++||++............. .        +... ....                      
T Consensus        15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~--------~~~~v~~~~----------------------   63 (342)
T 1yfq_A           15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-R--------YKHPLLCCN----------------------   63 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-E--------CSSCEEEEE----------------------
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-e--------cCCceEEEE----------------------
Confidence            466789999999999999999999987532000000000 0        0000 0000                      


Q ss_pred             CCCCCCCC-cCCCCCCCceEEE-Ee-eCCCeEEEEecC--CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-------
Q psy3337          81 DKIEDPPI-LNSIDSKEKNLRF-GF-KTFDSVQTVFAG--SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-------  148 (297)
Q Consensus        81 ~~~~~~~~-l~~~~~~d~~i~~-~~-~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-------  148 (297)
                       ...+ .- +..+++.|+.|++ ++ .+++. ..+. +  |...|.+++|+| +++|++++.|+.|++||+++       
T Consensus        64 -~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           64 -FIDN-TDLQIYVGTVQGEILKVDLIGSPSF-QALT-NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             -EEES-SSEEEEEEETTSCEEEECSSSSSSE-EECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             -ECCC-CCcEEEEEcCCCeEEEEEeccCCce-Eecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence             0000 11 2456778999999 77 66654 5555 7  999999999999 99999999999999999987       


Q ss_pred             --CeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCC-CCe
Q psy3337         149 --MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSP-KRS  224 (297)
Q Consensus       149 --~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~  224 (297)
                        ++++..+. |...|.+++|+|++  |++++.|+.|++||+++ +...........        ...+..++|+| ++.
T Consensus       139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~i~~i~~~~~~~~  207 (342)
T 1yfq_A          139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGL--------KYQIRDVALLPKEQE  207 (342)
T ss_dssp             EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSC--------SSCEEEEEECSGGGC
T ss_pred             ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCC--------CCceeEEEECCCCCC
Confidence              77777776 88999999999987  99999999999999987 543221111110        11234588999 999


Q ss_pred             EEEEeccCcccccCCCCeEEEEeCCCC------ceEEEeccCC----------CeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         225 RLFTLANPLAQNKRGISYVQQWDVDSG------RLRLAREMKE----------SLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       225 ~l~~~~~~~~~~g~~d~~i~~wd~~~~------~~~~~~~~~~----------~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                      ++++.+        .++.|++|++...      +....+..|.          .|.+++|+|++++|++++. ||.|++|
T Consensus       208 ~l~~~~--------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw  278 (342)
T 1yfq_A          208 GYACSS--------IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCW  278 (342)
T ss_dssp             EEEEEE--------TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEE
T ss_pred             EEEEEe--------cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-CceEEEE
Confidence            999854        4999999999886      7777777653          5999999999999999999 9999999


Q ss_pred             EeCCceec
Q psy3337         289 IAFSLQMC  296 (297)
Q Consensus       289 d~~~~~~~  296 (297)
                      |+.+++++
T Consensus       279 d~~~~~~~  286 (342)
T 1yfq_A          279 NLQTRKKI  286 (342)
T ss_dssp             ETTTTEEE
T ss_pred             cCccHhHh
Confidence            99988764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.1e-28  Score=226.64  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=179.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEee--EEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITA--EFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      +|..|++++++|++|+.|+.++||++..  .....  ..          .++......-.                    
T Consensus        13 ~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~--~l----------~~h~~~V~~l~--------------------   60 (753)
T 3jro_A           13 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--TL----------TGHEGPVWRVD--------------------   60 (753)
T ss_dssp             EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE--EE----------CCCSSCEEEEE--------------------
T ss_pred             EEEEECCCCCeEEEEECCCcEEEEecCCCCCccce--ec----------cCCcCceEEEE--------------------
Confidence            5677899999999999999999999873  22110  00          00000000000                    


Q ss_pred             CCCCCCCCCcCCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCe--ee
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMK--PL  152 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~--~~  152 (297)
                       .......-+..+++.|++|++ ++.+++  .+..+. +|...|++++|+|+  +++|++|+.||.|++||++++.  ..
T Consensus        61 -~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~  138 (753)
T 3jro_A           61 -WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP  138 (753)
T ss_dssp             -ECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred             -ecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence             000000112567889999999 888886  555565 89999999999999  9999999999999999998763  45


Q ss_pred             EEeccccCCeeEEEEcc-------------CCCEEEEEeCCCcEEEEEcCCCc----eeeeeeccCCCCceEEEEeeeee
Q psy3337         153 LHIEAHSKEIDDVDFSI-------------SGEQIVSIAKDGKAFVWNSKNGS----LSKELKWNTPDNIKYLFKRCRYG  215 (297)
Q Consensus       153 ~~~~~~~~~v~~~~~sp-------------~~~~l~s~~~d~~v~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  215 (297)
                      ..+.+|...|.+++|+|             ++.+|++++.||.|++||++++.    ....+..|.          ..+.
T Consensus       139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~----------~~V~  208 (753)
T 3jro_A          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS----------DWVR  208 (753)
T ss_dssp             EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS----------SCEE
T ss_pred             eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC----------CcEE
Confidence            56778999999999999             58999999999999999998773    334444443          2344


Q ss_pred             eeeeCCC---CeEEEEeccCcccccCCCCeEEEEeCCCCc-----eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         216 LVEDSPK---RSRLFTLANPLAQNKRGISYVQQWDVDSGR-----LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       216 ~~~~s~~---~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-----~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                      .++|+|+   +.++++++        .|+.|++||+.+++     .......+.. |.+++|+|+|.+|++++. ||.|+
T Consensus       209 ~l~~sp~~~~~~~l~s~s--------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-Dg~I~  279 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVS--------QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVT  279 (753)
T ss_dssp             EEEECCCCSSSEEEEEEE--------SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS-SSCEE
T ss_pred             EEEeccCCCCCCEEEEEe--------cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC-CCEEE
Confidence            5889999   89999855        49999999999864     2222233444 999999999999999999 99999


Q ss_pred             EEEeCCc
Q psy3337         287 VYIAFSL  293 (297)
Q Consensus       287 vwd~~~~  293 (297)
                      +||+.+.
T Consensus       280 vwd~~~~  286 (753)
T 3jro_A          280 LWKENLE  286 (753)
T ss_dssp             CCBCCSS
T ss_pred             EEecCCC
Confidence            9998853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.6e-28  Score=210.92  Aligned_cols=185  Identities=11%  Similarity=0.000  Sum_probs=148.9

Q ss_pred             CCCCCCCceEEE-EeeCC--CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe---eeEEeccccCCee
Q psy3337          90 NSIDSKEKNLRF-GFKTF--DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK---PLLHIEAHSKEID  163 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~  163 (297)
                      ..+++.|+.|++ ++.++  +.+..+. +|...|.+++|+|++++|++++.|+.|++||+.+++   ....+..|...|.
T Consensus        26 l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~  104 (377)
T 3dwl_C           26 FVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT  104 (377)
T ss_dssp             EECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE
T ss_pred             EEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE
Confidence            457788999999 88887  6666776 999999999999999999999999999999998876   6778888999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeeeec-cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         164 DVDFSISGEQIVSIAKDGKAFVWNSKNGSL---SKELKW-NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      +++|+|++++|++++.|+.|++||+++++.   ...+.. |.          ..+..++|+|++.+|++++        .
T Consensus       105 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~l~~~~--------~  166 (377)
T 3dwl_C          105 FVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR----------STILSLDWHPNNVLLAAGC--------A  166 (377)
T ss_dssp             EEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC----------SCEEEEEECTTSSEEEEEE--------S
T ss_pred             EEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC----------CCeEEEEEcCCCCEEEEEe--------C
Confidence            999999999999999999999999988763   455544 32          2344588999999999854        4


Q ss_pred             CCeEEEEeCC------------------CCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         240 ISYVQQWDVD------------------SGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       240 d~~i~~wd~~------------------~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |+.|++||+.                  .++++..+ .|.. |.+++|+|+|++|++++. ||.|++||+.+++.
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH-DSSVTIAYPSAPEQ  239 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET-TTEEC-CEECSTTS
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC-CCcEEEEECCCCCC
Confidence            9999999985                  35566666 6655 999999999999999999 99999999998765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=1.2e-26  Score=196.20  Aligned_cols=243  Identities=18%  Similarity=0.161  Sum_probs=183.4

Q ss_pred             cceeeeCC-CccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNG-KNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~-~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|+++ +++|++||.|+.++||++...........       ...+++...-.     .                  
T Consensus        42 ~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~-------~~l~~h~~~V~-----~------------------   91 (340)
T 4aow_A           42 TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ-------RALRGHSHFVS-----D------------------   91 (340)
T ss_dssp             EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE-------EEECCCSSCEE-----E------------------
T ss_pred             EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee-------EEEeCCCCCEE-----E------------------
Confidence            56678865 67899999999999999875321100000       00000000000     0                  


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-eEEeccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-LLHIEAH  158 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~  158 (297)
                      ....+..-+..+++.|+.|++ +........... .+...+..+.+++++++|++|+.|+.+++||+..... ...+.+|
T Consensus        92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~  170 (340)
T 4aow_A           92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH  170 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred             EEECCCCCEEEEEcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccc
Confidence            000001112457889999999 777777766666 8888899999999999999999999999999876543 4556789


Q ss_pred             cCCeeEEEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         159 SKEIDDVDFSISG--EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       159 ~~~v~~~~~sp~~--~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      ...+..++|++++  .++++++.|+.|++||+++++.+..+..|..          .+..++|+|++.+|++++      
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~----------~v~~~~~s~~~~~l~s~s------  234 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG----------YLNTVTVSPDGSLCASGG------  234 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS----------CEEEEEECTTSSEEEEEE------
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC----------cEEEEEECCCCCEEEEEe------
Confidence            9999999998864  5788999999999999999999888877642          234578999999999854      


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                        .|+.|++||+++.+++..+..+..|.+++|+|++.+++++ . |+.|++||++++..
T Consensus       235 --~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~-d~~i~iwd~~~~~~  289 (340)
T 4aow_A          235 --KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA-T-GPSIKIWDLEGKII  289 (340)
T ss_dssp             --TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEE-E-TTEEEEEETTTTEE
T ss_pred             --CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeecc-C-CCEEEEEECCCCeE
Confidence              5999999999999999999988889999999998766555 5 99999999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=3.1e-27  Score=208.60  Aligned_cols=182  Identities=20%  Similarity=0.292  Sum_probs=154.3

Q ss_pred             CCCCCCCceEEE-EeeCCCe-----------------------EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEe
Q psy3337          90 NSIDSKEKNLRF-GFKTFDS-----------------------VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWS  145 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~-----------------------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  145 (297)
                      ..+++.|++|++ ++.++..                       +..+. +|...|.++  ++++++|++|+.|+.|++||
T Consensus       220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd  296 (464)
T 3v7d_B          220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR-GHMASVRTV--SGHGNIVVSGSYDNTLIVWD  296 (464)
T ss_dssp             EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC-CCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc-CccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence            457888999999 8776653                       33444 899988776  67889999999999999999


Q ss_pred             CCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeE
Q psy3337         146 FPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSR  225 (297)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  225 (297)
                      +.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...          +..+.++  +.+
T Consensus       297 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~----------v~~~~~~--~~~  364 (464)
T 3v7d_B          297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL----------VGLLRLS--DKF  364 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----------EEEEEEC--SSE
T ss_pred             CCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc----------EEEEEEc--CCE
Confidence            9999999999999999999999999999999999999999999999999998877522          2235555  567


Q ss_pred             EEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         226 LFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++++        +.|+.|++||+.++...........+..++|+|++.+|++|+  ||.|++||+.+++.+
T Consensus       365 l~s~--------s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          365 LVSA--------AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EEEE--------ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCCEE
T ss_pred             EEEE--------eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec--CCeEEEEECCCCcEE
Confidence            8774        459999999999988777766555588899999999999988  899999999998875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=2.9e-27  Score=215.30  Aligned_cols=187  Identities=14%  Similarity=0.122  Sum_probs=160.5

Q ss_pred             CCCCCCCceEEE-EeeCC--------CeEEEEecCCCCcEEEEEEecCCCEEEEEcCC----CcEEEEeCCCCeeeEEec
Q psy3337          90 NSIDSKEKNLRF-GFKTF--------DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD----GHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~--------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----~~i~iwd~~~~~~~~~~~  156 (297)
                      ..+++.|++|++ ++.++        +.+..+. .|...|.+++|+|++++|++++.+    +.|++||  .++.+..+.
T Consensus        81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~  157 (615)
T 1pgu_A           81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS  157 (615)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred             EEEecCCCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee
Confidence            557788999999 88654        5666666 899999999999999999999988    6888898  567888999


Q ss_pred             cccCCeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC-CeEEEEeccCcc
Q psy3337         157 AHSKEIDDVDFSISGE-QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK-RSRLFTLANPLA  234 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~-~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~  234 (297)
                      +|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+..|....       ..+..++|+|+ +.+|++++    
T Consensus       158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~----  226 (615)
T 1pgu_A          158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG-------SFVRDVEFSPDSGEFVITVG----  226 (615)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT-------CCEEEEEECSTTCCEEEEEE----
T ss_pred             cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC-------ceEEEEEECCCCCCEEEEEe----
Confidence            9999999999999998 89999999999999999999888887764210       02345889999 99999854    


Q ss_pred             cccCCCCeEEEEeCCCCceEEEe-c---cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAR-E---MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~-~---~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                          .|+.|++||+.+++.+..+ .   .|.. |.+++|+ ++.+|++++. |+.|++||+.+++.+
T Consensus       227 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          227 ----SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA-DATIRVWDVTTSKCV  287 (615)
T ss_dssp             ----TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET-TSEEEEEETTTTEEE
T ss_pred             ----CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC-CCcEEEEECCCCcEE
Confidence                4999999999999999988 4   5555 9999999 9999999999 999999999987754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.4e-27  Score=196.37  Aligned_cols=231  Identities=11%  Similarity=0.115  Sum_probs=174.7

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..| +++++|++|+.|+.+++|++...............           -....-.+                    
T Consensus        22 ~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-----------v~~~~~~~--------------------   69 (313)
T 3odt_A           22 RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF-----------LNSVCYDS--------------------   69 (313)
T ss_dssp             EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSC-----------EEEEEEET--------------------
T ss_pred             EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCcc-----------EEEEEECC--------------------
Confidence            45556 77889999999999999998654322100000000           00000000                    


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeC---CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKT---FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                          ..-+..+++.|+.+++ ++..   ++.+..+. +|...|.+++|  ++++|++++.|+.|++||  .++.+..+..
T Consensus        70 ----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           70 ----EKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             ----TTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             ----CCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc
Confidence                0011457788999998 6544   35566676 99999999999  577999999999999999  6778888999


Q ss_pred             ccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeec-cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         158 HSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNGSLSKELKW-NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       158 ~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      |...+.++.|+| ++.+|++++.|+.|++||  .++....+.. +.          ..+..++|+|++. +++       
T Consensus       141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~----------~~i~~~~~~~~~~-~~~-------  200 (313)
T 3odt_A          141 HNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHN----------DVVRHLAVVDDGH-FIS-------  200 (313)
T ss_dssp             CSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCS----------SCEEEEEEEETTE-EEE-------
T ss_pred             CCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCc----------ccEEEEEEcCCCe-EEE-------
Confidence            999999999998 899999999999999999  4455555554 22          1233577899998 766       


Q ss_pred             ccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         236 NKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       ++.++.|++||+++++++..+..|.. |.+++|+|++ .|++++. ||.|++||+.+++.+
T Consensus       201 -~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          201 -CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE-DRTVRIWSKENGSLK  259 (313)
T ss_dssp             -EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET-TSEEEEECTTTCCEE
T ss_pred             -ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec-CCEEEEEECCCCcee
Confidence             44599999999999999999988777 9999999999 5888999 999999999988754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.4e-27  Score=206.88  Aligned_cols=194  Identities=12%  Similarity=0.097  Sum_probs=133.7

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEE-------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLH-------------  154 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~-------------  154 (297)
                      ..+++.|++|+| |+.++..+..+. +|...|.+++|+|++ ++|++|+.|++|++||+++++....             
T Consensus       159 las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~  237 (393)
T 4gq1_A          159 IASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL  237 (393)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE
T ss_pred             EEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE
Confidence            568899999999 888888888887 888999999999987 5899999999999999987653322             


Q ss_pred             ------------eccccCCeeEEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEE--------eee
Q psy3337         155 ------------IEAHSKEIDDVDFS-ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFK--------RCR  213 (297)
Q Consensus       155 ------------~~~~~~~v~~~~~s-p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~--------~~~  213 (297)
                                  ..+|...|.++.|+ |+++.|++++.|+++++||+..+.....+..+........+.        ...
T Consensus       238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (393)
T 4gq1_A          238 TLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS  317 (393)
T ss_dssp             EEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC
T ss_pred             ecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc
Confidence                        23577889999987 799999999999999999998877666655443110000000        000


Q ss_pred             eeeeeeCC--CCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         214 YGLVEDSP--KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       214 ~~~~~~s~--~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      .....++|  ++.++++        |+.|+.|++||+.++++...+..+.. |.+++|+|||++|++++.  +.+.+|.+
T Consensus       318 ~~~~~~~~~~~~~~~~s--------gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~--~Gv~lvrL  387 (393)
T 4gq1_A          318 LLGACPHPRYMDYFATA--------HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE--GSVLLTRL  387 (393)
T ss_dssp             SSCCEECSSCTTEEEEE--------ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES--SEEEEEEE
T ss_pred             ceeEEEccCCCCEEEEE--------ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEE
Confidence            01122333  3333333        67799999999999887776666555 999999999999999995  55777776


Q ss_pred             CCce
Q psy3337         291 FSLQ  294 (297)
Q Consensus       291 ~~~~  294 (297)
                      ....
T Consensus       388 ~gf~  391 (393)
T 4gq1_A          388 MGFT  391 (393)
T ss_dssp             GGGC
T ss_pred             eCcc
Confidence            5543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=2.9e-27  Score=231.94  Aligned_cols=245  Identities=16%  Similarity=0.165  Sum_probs=189.6

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcc-cccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKR-KEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|+++|++|++|+.|+.++||++..........            ++... ....                      
T Consensus       619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------------~h~~~v~~~~----------------------  664 (1249)
T 3sfz_A          619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK------------AHEDEVLCCA----------------------  664 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------------CCSSCEEEEE----------------------
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec------------cCCCCEEEEE----------------------
Confidence            566799999999999999999999986543211000            00000 0000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                       ...+ .-+..+++.|++|++ +..+++.+..+. +|...|.+++|+|  ++.++++|+.|+.|++||+.+++.+..+.+
T Consensus       665 -~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  741 (1249)
T 3sfz_A          665 -FSSD-DSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG  741 (1249)
T ss_dssp             -ECTT-SSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred             -EecC-CCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence             0000 112457788999999 999999999998 9999999999999  456899999999999999999999999999


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC----------------------CCCceEEEE-----
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT----------------------PDNIKYLFK-----  210 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~----------------------~~~~~~~~~-----  210 (297)
                      |...|.+++|+|++++|++++.|+.|++||+.++.....+....                      |++..+...     
T Consensus       742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v  821 (1249)
T 3sfz_A          742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV  821 (1249)
T ss_dssp             CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence            99999999999999999999999999999998887665543211                      111111000     


Q ss_pred             ------------------eeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCC
Q psy3337         211 ------------------RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDD  271 (297)
Q Consensus       211 ------------------~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~d  271 (297)
                                        ...+..++|+|++..+++        ++.++.|++||+.+++.+..+.+|.. |.+++|+|+
T Consensus       822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--------~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  893 (1249)
T 3sfz_A          822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI--------ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD  893 (1249)
T ss_dssp             EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE--------ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE--------EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC
Confidence                              112334667777777776        55699999999999999999999887 999999999


Q ss_pred             CCEEEEEecCCCeEEEEEeCC
Q psy3337         272 GRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       272 g~~l~~~~~~dg~i~vwd~~~  292 (297)
                      |.+|++++. ||.|++||+.+
T Consensus       894 g~~l~s~s~-dg~v~vw~~~~  913 (1249)
T 3sfz_A          894 GSSFLTASD-DQTIRVWETKK  913 (1249)
T ss_dssp             SSEEEEEET-TSCEEEEEHHH
T ss_pred             CCEEEEEeC-CCeEEEEEccc
Confidence            999999999 99999999764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.1e-27  Score=201.39  Aligned_cols=183  Identities=13%  Similarity=0.165  Sum_probs=148.7

Q ss_pred             CCCCCCCceEEE-EeeCCC--eEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCC--eeeEEeccccCCe
Q psy3337          90 NSIDSKEKNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKM--KPLLHIEAHSKEI  162 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v  162 (297)
                      ..+++.|++|++ ++.++.  .+..+. +|...|++++|+|  ++++|++|+.|++|++||++++  +.+..+.+|...|
T Consensus        28 lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V  106 (316)
T 3bg1_A           28 LATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV  106 (316)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCC
T ss_pred             EEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCce
Confidence            567899999999 888775  355666 9999999999986  4899999999999999999876  3567788999999


Q ss_pred             eEEEEccC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeccCCCCceEEEEeeeeeeeeeCCCC--------------
Q psy3337         163 DDVDFSIS--GEQIVSIAKDGKAFVWNSKNGSL---SKELKWNTPDNIKYLFKRCRYGLVEDSPKR--------------  223 (297)
Q Consensus       163 ~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------------  223 (297)
                      .+++|+|+  +.+|++++.|++|++||++.+..   ...+..|..          .+..++|+|+.              
T Consensus       107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~~~~~~~~~~~~  176 (316)
T 3bg1_A          107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI----------GCNAVSWAPAVVPGSLIDHPSGQKP  176 (316)
T ss_dssp             CEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS----------CBCCCEECCCCCC------CCSCCC
T ss_pred             EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC----------CcceEEEccccCCccccccccccCc
Confidence            99999997  78999999999999999986532   223333321          12346677762              


Q ss_pred             ---eEEEEeccCcccccCCCCeEEEEeCCCC---ceEEEeccCCC-eEEEEEcCCC----CEEEEEecCCCeEEEEEeCC
Q psy3337         224 ---SRLFTLANPLAQNKRGISYVQQWDVDSG---RLRLAREMKES-LSALAVRDDG----RFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       224 ---~~l~~~~~~~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~-v~~~~~s~dg----~~l~~~~~~dg~i~vwd~~~  292 (297)
                         .+|++        |+.|+.|++||++..   +++..+.+|.. |.+++|+|++    .+|++++. |++|++||+.+
T Consensus       177 ~~~~~l~s--------gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~-D~~v~iw~~~~  247 (316)
T 3bg1_A          177 NYIKRFAS--------GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ-DGRVFIWTCDD  247 (316)
T ss_dssp             CCCCBEEC--------CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET-TCEEEEEECSS
T ss_pred             cccceEEE--------ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC-CCeEEEEEccC
Confidence               44554        777999999999764   46677888877 9999999987    88999999 99999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=3.5e-27  Score=204.69  Aligned_cols=185  Identities=16%  Similarity=0.230  Sum_probs=158.0

Q ss_pred             CCCCCCceEEE-EeeCC----CeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCC-------eeeEEecc
Q psy3337          91 SIDSKEKNLRF-GFKTF----DSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKM-------KPLLHIEA  157 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~----~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~  157 (297)
                      .+++.|+.|++ ++...    ..+..+. +|...|++++|+| ++++|++|+.|+.|++||+.++       +++..+.+
T Consensus        51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  129 (402)
T 2aq5_A           51 CEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG  129 (402)
T ss_dssp             BCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred             EEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence            35788999999 76443    2334455 8999999999999 8999999999999999999887       66788999


Q ss_pred             ccCCeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeee--eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         158 HSKEIDDVDFSISG-EQIVSIAKDGKAFVWNSKNGSLSKEL--KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       158 ~~~~v~~~~~sp~~-~~l~s~~~d~~v~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      |...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..|.          ..+..++|+|++.+|++++    
T Consensus       130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~----  195 (402)
T 2aq5_A          130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP----------DTIYSVDWSRDGALICTSC----  195 (402)
T ss_dssp             CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC----------SCEEEEEECTTSSCEEEEE----
T ss_pred             CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC----------CceEEEEECCCCCEEEEEe----
Confidence            99999999999998 69999999999999999999888887  4443          1234588999999999955    


Q ss_pred             cccCCCCeEEEEeCCCCceEEEe-ccCCC--eEEEEEcCCCCEEEEE---ecCCCeEEEEEeCCcee
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAR-EMKES--LSALAVRDDGRFVAVG---TMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~-~~~~~--v~~~~~s~dg~~l~~~---~~~dg~i~vwd~~~~~~  295 (297)
                          .|+.|++||+++++.+..+ ..|..  +.+++|+|++.+|++|   +. |+.|++||+.+++.
T Consensus       196 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          196 ----RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS-ERQVALWDTKHLEE  257 (402)
T ss_dssp             ----TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC-CEEEEEEETTBCSS
T ss_pred             ----cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC-CceEEEEcCccccC
Confidence                4999999999999998888 56654  8999999999999999   67 99999999988653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=1.7e-27  Score=233.48  Aligned_cols=252  Identities=13%  Similarity=0.143  Sum_probs=188.9

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++++.|+.++||++..........            ++....                     ..-..
T Consensus       661 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------------~~~~~v---------------------~~~~~  707 (1249)
T 3sfz_A          661 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD------------EHSEQV---------------------NCCHF  707 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------CCSSCE---------------------EEEEE
T ss_pred             EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc------------CCCCcE---------------------EEEEE
Confidence            466799999999999999999999986532210000            000000                     00000


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe-----
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-----  155 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-----  155 (297)
                      .......+..+++.|+.|++ ++.+++.+..+. +|...|++++|+|++++|++++.|+.|++||+.+++....+     
T Consensus       708 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  786 (1249)
T 3sfz_A          708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF  786 (1249)
T ss_dssp             CSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCC
T ss_pred             ecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccc
Confidence            01111223557889999999 999999999988 99999999999999999999999999999998766433222     


Q ss_pred             --------------------------------------------------ccccCCeeEEEEccCCCEEEEEeCCCcEEE
Q psy3337         156 --------------------------------------------------EAHSKEIDDVDFSISGEQIVSIAKDGKAFV  185 (297)
Q Consensus       156 --------------------------------------------------~~~~~~v~~~~~sp~~~~l~s~~~d~~v~l  185 (297)
                                                                        .+|...|.+++|+|++.++++++.|+.|++
T Consensus       787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v  866 (1249)
T 3sfz_A          787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL  866 (1249)
T ss_dssp             C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred             ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence                                                              167788999999999999999999999999


Q ss_pred             EEcCCCceeeeeeccCC---------CCceEEEE----------------------------------------------
Q psy3337         186 WNSKNGSLSKELKWNTP---------DNIKYLFK----------------------------------------------  210 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~---------~~~~~~~~----------------------------------------------  210 (297)
                      ||+.++..+..+..|..         ++..+...                                              
T Consensus       867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            99999888777766541         11100000                                              


Q ss_pred             --------------eeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEE
Q psy3337         211 --------------RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFV  275 (297)
Q Consensus       211 --------------~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l  275 (297)
                                    ...+..++++|++.++++        |+.++.|++||+.+++....+.+|.. |.+++|+|+|++|
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~--------g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF--------GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEECTTSSEEEE--------EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred             EEEecCcceEEEcccCcEEEEEEcCCCCEEEE--------EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence                          001234556666666666        55699999999999999988888877 9999999999999


Q ss_pred             EEEecCCCeEEEEEeCCceec
Q psy3337         276 AVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++++. ||.|++||+.+++.+
T Consensus      1019 ~s~~~-dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A         1019 ISSSE-DSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             EEECS-SSBEEEEETTTTEEE
T ss_pred             EEEcC-CCEEEEEECCCCceE
Confidence            99999 999999999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=8.9e-27  Score=199.10  Aligned_cols=236  Identities=13%  Similarity=0.130  Sum_probs=167.6

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|+.|+++|.+|++|+.| .++||++............ ..                                   ...
T Consensus        22 V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~-----------------------------------~~~   64 (355)
T 3vu4_A           22 VTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HL-----------------------------------SKV   64 (355)
T ss_dssp             CCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CC-----------------------------------CEE
T ss_pred             eEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-Ce-----------------------------------EEE
Confidence            4677899998877776655 6889998654432100000 00                                   000


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC------------------------------
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG------------------------------  129 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g------------------------------  129 (297)
                      ........+..+++.|++|++ |..+++.+..+.  |...|.+++|+++.                              
T Consensus        65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~  142 (355)
T 3vu4_A           65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGV  142 (355)
T ss_dssp             EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEE
T ss_pred             EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCce
Confidence            000111122345677789999 888888877774  55678888887652                              


Q ss_pred             -----CEEEE--EcCCCcEEEEeCCCCe---------------e-eEEeccccCCeeEEEEccCCCEEEEEeCCCc-EEE
Q psy3337         130 -----DLMVT--GGTDGHLRLWSFPKMK---------------P-LLHIEAHSKEIDDVDFSISGEQIVSIAKDGK-AFV  185 (297)
Q Consensus       130 -----~~l~s--~~~d~~i~iwd~~~~~---------------~-~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~-v~l  185 (297)
                           .+++.  |+.||.|++||+.+++               + +..+.+|...|.+++|+|++++|++++.|++ |++
T Consensus       143 ~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i  222 (355)
T 3vu4_A          143 CEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV  222 (355)
T ss_dssp             EEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred             EEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence                 23444  5789999999998765               2 6788999999999999999999999999998 999


Q ss_pred             EEcCCCceeeeee-c-cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce--EEE-----
Q psy3337         186 WNSKNGSLSKELK-W-NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL--RLA-----  256 (297)
Q Consensus       186 wd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~-----  256 (297)
                      ||+++++.+..+. + |.          ..+..++|+|++.+|++++        .|+.|++||+..+..  ...     
T Consensus       223 wd~~~~~~~~~~~~g~h~----------~~v~~~~~s~~~~~l~s~s--------~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          223 FKTEDGVLVREFRRGLDR----------ADVVDMKWSTDGSKLAVVS--------DKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             EETTTCCEEEEEECTTCC----------SCEEEEEECTTSCEEEEEE--------TTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             EECCCCcEEEEEEcCCCC----------CcEEEEEECCCCCEEEEEE--------CCCEEEEEEccCCCCccccccccee
Confidence            9999999998887 3 43          2344588999999999955        499999999976421  111     


Q ss_pred             ---------------ecc--CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         257 ---------------REM--KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       257 ---------------~~~--~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                                     +..  ......++|++||++|++++. ||.+++|++..++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~-dg~~~~~~~~~~~  338 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH-TRMIETFKVVFDD  338 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT-TTEEEEEEEEEET
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC-CCeEEEEEEEcCC
Confidence                           111  111467899999999999999 9999999987644

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.2e-27  Score=223.24  Aligned_cols=164  Identities=13%  Similarity=0.120  Sum_probs=136.1

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~  194 (297)
                      .|...|.+++|+| |++|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||+|++||++++...
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            5778899999999 8899999999999999999999888886 7788999999999999999999999999999887653


Q ss_pred             eeeec-------cCCCCceEEEEeeeeeeeeeCCCC-eEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC------
Q psy3337         195 KELKW-------NTPDNIKYLFKRCRYGLVEDSPKR-SRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK------  260 (297)
Q Consensus       195 ~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~------  260 (297)
                       .+..       ..+.     .....+..++|+|++ ..+++        |+.|+.| +||+++++++..+..+      
T Consensus       134 -~~~i~~~~~~~~~~~-----~h~~~V~sl~~sp~~~~~l~~--------g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~  198 (902)
T 2oaj_A          134 -SFKLDNLQKSSFFPA-----ARLSPIVSIQWNPRDIGTVLI--------SYEYVTL-TYSLVENEIKQSFIYELPPFAP  198 (902)
T ss_dssp             -EEEECCHHHHHTCSS-----SCCCCCCEEEEETTEEEEEEE--------ECSSCEE-EEETTTTEEEEEECCCBCTTCC
T ss_pred             -cceeccccccccccc-----cCCCCeEEEEEccCCCCEEEE--------EeCCCcE-EEECCCCceEEEEecccCCcCC
Confidence             2111       0000     011245568899974 56666        5569999 9999999988888765      


Q ss_pred             -------------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         261 -------------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       261 -------------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                                   ..|.+++|+|+|.+|++++. ||.|++||+.+++++
T Consensus       199 ~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~-Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          199 GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE-DNSLVFWDANSGHMI  246 (902)
T ss_dssp             CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET-TCCEEEEETTTCCEE
T ss_pred             CcccccccccccCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEE
Confidence                         34999999999999999999 999999999887754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=7.8e-27  Score=198.96  Aligned_cols=179  Identities=9%  Similarity=0.023  Sum_probs=136.1

Q ss_pred             EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE--ccCCCEEEEEeCCCcEEEEE
Q psy3337         110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF--SISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       110 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~s~~~d~~v~lwd  187 (297)
                      ..+. +|...|++++|+|++++|++++.|+.|++||+.+++.+. +..|...|.+++|  +|++.+|++++.|+.|++||
T Consensus        80 ~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd  157 (368)
T 3mmy_A           80 KAQQ-MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD  157 (368)
T ss_dssp             EEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred             EEec-cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence            4455 899999999999999999999999999999999988765 5569999999999  89999999999999999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEe------e--------------------------eeeeeeeCCCCeEEEEeccCccc
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKR------C--------------------------RYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~------~--------------------------~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      +++++.+..+..+.... ...+..      .                          ....+.+.++...    ....++
T Consensus       158 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  232 (368)
T 3mmy_A          158 TRSSNPMMVLQLPERCY-CADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN----KPTGFA  232 (368)
T ss_dssp             SSCSSCSEEEECSSCEE-EEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS----CEEEEE
T ss_pred             CCCCcEEEEEecCCCce-EEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC----CCCeEE
Confidence            99998887776553110 000000      0                          0001111111110    000144


Q ss_pred             ccCCCCeEEEEeCCCC---ceEEEeccCC-------------CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         236 NKRGISYVQQWDVDSG---RLRLAREMKE-------------SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~---~~~~~~~~~~-------------~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +++.|+.|++||++..   +.+..+..|.             .|.+++|+|++++|++++. ||.|++||+.+++++
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~  308 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKL  308 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEE
T ss_pred             EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEE
Confidence            5777999999999986   5566666665             4999999999999999999 999999999988765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=202.95  Aligned_cols=188  Identities=15%  Similarity=0.183  Sum_probs=143.7

Q ss_pred             CCCCCceEEE-Eee-CCCeEEEE------ecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCee----eEEeccc
Q psy3337          92 IDSKEKNLRF-GFK-TFDSVQTV------FAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKP----LLHIEAH  158 (297)
Q Consensus        92 ~~~~d~~i~~-~~~-~~~~~~~~------~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~  158 (297)
                      ++ .|+.|++ ++. .++.+..+      ..+|...|++++|+|++ ++|++|+.|+.|++||+++++.    +..+..|
T Consensus       194 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (447)
T 3dw8_B          194 SA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP  272 (447)
T ss_dssp             EE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC
T ss_pred             Ee-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC
Confidence            45 6999999 777 34444432      23899999999999998 9999999999999999998886    6788888


Q ss_pred             cC------------CeeEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeccCCCCceE--EEE-ee--eeeeeeeC
Q psy3337         159 SK------------EIDDVDFSISGEQIVSIAKDGKAFVWNSKN-GSLSKELKWNTPDNIKY--LFK-RC--RYGLVEDS  220 (297)
Q Consensus       159 ~~------------~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~--~~~-~~--~~~~~~~s  220 (297)
                      ..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+..|.......  .+. .+  ....++|+
T Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s  351 (447)
T 3dw8_B          273 EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN  351 (447)
T ss_dssp             -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred             CCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence            76            8999999999999999999 9999999997 88888887764211000  000 00  01127799


Q ss_pred             CCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe---------------------------------ccCCCeEEEE
Q psy3337         221 PKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR---------------------------------EMKESLSALA  267 (297)
Q Consensus       221 ~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~---------------------------------~~~~~v~~~~  267 (297)
                      |++.+|++        |+.|+.|++||+.+++.+...                                 .....|..++
T Consensus       352 ~~~~~l~s--------~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  423 (447)
T 3dw8_B          352 GSDSVVMT--------GSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA  423 (447)
T ss_dssp             TTSSEEEE--------ECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred             CCCCEEEE--------eccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence            99999988        555999999999998776422                                 1122388999


Q ss_pred             EcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         268 VRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       268 ~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      |+|++.+|++++. + .+++|..+
T Consensus       424 ~~p~~~~la~~~~-~-~~~~~~~~  445 (447)
T 3dw8_B          424 WHPKENIIAVATT-N-NLYIFQDK  445 (447)
T ss_dssp             ECSSSSEEEEECS-S-CEEEEECC
T ss_pred             ECCCCCEEEEEec-c-eeeeeccc
Confidence            9999999999986 5 58888753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=1.7e-26  Score=203.05  Aligned_cols=179  Identities=20%  Similarity=0.310  Sum_probs=153.8

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|.+++|  ++++|++|+.|+.|++||+++++.+..+.+|...|.+++| 
T Consensus       212 l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-  287 (445)
T 2ovr_B          212 VVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-  287 (445)
T ss_dssp             EEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-
Confidence            457888999999 999999998888 99999999999  7889999999999999999999999999999999999999 


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                       ++.++++++.|+.|++||+++++.+..+..|...    .      ..+  .+++.++++        |+.|+.|++||+
T Consensus       288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----v------~~~--~~~~~~l~~--------~~~dg~i~vwd~  346 (445)
T 2ovr_B          288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL----T------SGM--ELKDNILVS--------GNADSTVKIWDI  346 (445)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC----E------EEE--EEETTEEEE--------EETTSCEEEEET
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCccc----E------EEE--EEeCCEEEE--------EeCCCeEEEEEC
Confidence             7889999999999999999999988888766422    1      112  334667777        455999999999


Q ss_pred             CCCceEEEecc---CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREM---KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~---~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++++++..+..   |.. |.+++|+  +.+|++|+. ||.|++||+.+++.+
T Consensus       347 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          347 KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD-DGTVKLWDLKTGEFI  395 (445)
T ss_dssp             TTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCEE
T ss_pred             CCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC-CCeEEEEECCCCcee
Confidence            99999998875   444 9999995  689999999 999999999988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=1.8e-26  Score=202.43  Aligned_cols=177  Identities=18%  Similarity=0.296  Sum_probs=153.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeee---EEeccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL---LHIEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~  165 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|.+++|++  ++|++|+.|+.|++||+.+++..   ..+.+|...|.++
T Consensus       186 l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  262 (435)
T 1p22_A          186 IITGSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  262 (435)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEEEC-CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEc-CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence            567889999999 999999999988 9999999999974  59999999999999999887655   6778999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +|  ++++|++++.|+.|++||+++++.+..+..|...          +..+.+  ++.++++        |+.|+.|++
T Consensus       263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----------v~~~~~--~~~~l~~--------g~~dg~i~i  320 (435)
T 1p22_A          263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG----------IACLQY--RDRLVVS--------GSSDNTIRL  320 (435)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC----------EEEEEE--ETTEEEE--------EETTSCEEE
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc----------EEEEEe--CCCEEEE--------EeCCCeEEE
Confidence            99  6789999999999999999999999888876522          112344  4567777        455999999


Q ss_pred             EeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         246 WDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ||+++++++..+.+|.. |.+++|  ++.+|++|+. ||.|++||+.+++
T Consensus       321 wd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~-dg~i~vwd~~~~~  367 (435)
T 1p22_A          321 WDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY-DGKIKVWDLVAAL  367 (435)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET-TSCEEEEEHHHHT
T ss_pred             EECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC-CCcEEEEECCCCC
Confidence            99999999999998877 999999  7899999999 9999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=6.6e-26  Score=206.33  Aligned_cols=176  Identities=16%  Similarity=0.188  Sum_probs=153.3

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccC---CeeEEEEccC-
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSK---EIDDVDFSIS-  170 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~-  170 (297)
                      +.|++ +  +++.+..+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ 
T Consensus       142 ~~v~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (615)
T 1pgu_A          142 GVFISWD--SGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  218 (615)
T ss_dssp             EEEEETT--TCCEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             cEEEEEE--CCCcceeee-cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC
Confidence            56666 4  677788887 9999999999999997 899999999999999999999999999999   9999999999 


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeee-e---ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGSLSKEL-K---WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      +++|++++.|+.|++||+++++.+..+ .   .|.          ..+..++|+ ++.+|++++.        |+.|++|
T Consensus       219 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------~~v~~~~~~-~~~~l~~~~~--------d~~i~~w  279 (615)
T 1pgu_A          219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ----------GGIFALSWL-DSQKFATVGA--------DATIRVW  279 (615)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC----------SCEEEEEES-SSSEEEEEET--------TSEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEeEEecccccccC----------CceEEEEEc-CCCEEEEEcC--------CCcEEEE
Confidence            999999999999999999999988887 3   343          123457789 9999998554        9999999


Q ss_pred             eCCCCceEEEeccC-----CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         247 DVDSGRLRLAREMK-----ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       247 d~~~~~~~~~~~~~-----~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |+.+++.+..+..+     ..+.++.|+ ++.+|++++. ||.|++||+.+++.+
T Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          280 DVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL-DGTLNFYELGHDEVL  332 (615)
T ss_dssp             ETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEET-TSCEEEEETTEEEEE
T ss_pred             ECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEEC-CCCEEEEECCCCcEE
Confidence            99999999888876     338888886 8999999999 999999999887654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5e-27  Score=206.86  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=126.7

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC-----CeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK-----EIDDVDFSISGEQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~s~~~d~~v~lwd~~  189 (297)
                      .|...|.+++|||+|.+||+++.||.|++||...  .+..+. |..     .|.+++|||||++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688999999999999999999999999999544  666666 665     49999999999999999999999999998


Q ss_pred             CCce-------eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce---EEEe-c
Q psy3337         190 NGSL-------SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL---RLAR-E  258 (297)
Q Consensus       190 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~---~~~~-~  258 (297)
                      ++..       +.++..+.....      ..+..++|+|+|  +++++        .|+.|++||+..++.   ...+ .
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~------~~V~sVawSPdg--Laass--------~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSK------DWVTHIVWYEDV--LVAAL--------SNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCC------CCEEEEEEETTE--EEEEE--------TTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             CCccccccceeeeeeeccccccc------ccEEEEEEcCCc--EEEEe--------CCCeEEEEECCCCccccceeeecc
Confidence            8752       455543332211      234458999999  66644        499999999998663   3556 3


Q ss_pred             cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         259 MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       259 ~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +|.. |.+++|+  |..|++++  +++|++||+.+++.
T Consensus       224 ~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~  257 (588)
T 2j04_A          224 ASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSI  257 (588)
T ss_dssp             CCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEE
T ss_pred             cccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeE
Confidence            5654 9999999  68999887  79999999988765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=9.5e-27  Score=204.16  Aligned_cols=178  Identities=12%  Similarity=0.216  Sum_probs=148.2

Q ss_pred             CCCCCCCceEEE-EeeCCCeE---EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSV---QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~---~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  165 (297)
                      ..+++.|++|++ ++.++...   ..+. +|...|.+++|  ++++|++|+.|+.|++||+++++.+..+.+|...|.++
T Consensus       226 l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  302 (435)
T 1p22_A          226 MVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL  302 (435)
T ss_dssp             EEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEE
Confidence            567889999999 88887755   4444 99999999999  78899999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      .|+  +.+|++++.|+.|++||+++++.+..+..|...          +..+++  ++.+|++        |+.|+.|++
T Consensus       303 ~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~----------v~~~~~--~~~~l~s--------g~~dg~i~v  360 (435)
T 1p22_A          303 QYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL----------VRCIRF--DNKRIVS--------GAYDGKIKV  360 (435)
T ss_dssp             EEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC----------EEEEEC--CSSEEEE--------EETTSCEEE
T ss_pred             EeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc----------EEEEEe--cCCEEEE--------EeCCCcEEE
Confidence            994  679999999999999999999999888876521          223445  6778888        455999999


Q ss_pred             EeCCCCc---------eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         246 WDVDSGR---------LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       246 wd~~~~~---------~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ||+.+++         ++..+..|.. |.+++|  ++.+|++++. ||.|++||+.+...
T Consensus       361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWDFLNDPA  417 (435)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC------
T ss_pred             EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC-CCEEEEEECCCCCC
Confidence            9997765         7888888877 999999  7889999999 99999999977653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=3.3e-27  Score=204.55  Aligned_cols=198  Identities=12%  Similarity=0.121  Sum_probs=134.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEE--E--ecCCCCcEEEEEEec--------CCCEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQT--V--FAGSESLQRVVRLSR--------NGDLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~--~--~~~h~~~v~~~~~s~--------~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                      ..+++.|++|+| +..+++....  +  ..+|.+.|++++|+|        |+++||+|+.|++|+|||+.++.++..+.
T Consensus       104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~  183 (393)
T 4gq1_A          104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY  183 (393)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec
Confidence            457889999999 8888765432  1  148999999999998        78999999999999999999888888888


Q ss_pred             cccCCeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEE---------------EeeeeeeeeeC
Q psy3337         157 AHSKEIDDVDFSISG-EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLF---------------KRCRYGLVEDS  220 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~-~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~s  220 (297)
                      .|...|.+++|+|++ .+|++++.|++|++||+++++.......+........+               ....+..+.|+
T Consensus       184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~  263 (393)
T 4gq1_A          184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI  263 (393)
T ss_dssp             ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred             CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence            899999999999987 48999999999999999988665444322110000000               01123345554


Q ss_pred             -CCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEE------------------EEEcC--CCCEEEEE
Q psy3337         221 -PKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSA------------------LAVRD--DGRFVAVG  278 (297)
Q Consensus       221 -~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~------------------~~~s~--dg~~l~~~  278 (297)
                       |++..|++.+        .|+.+++||+..++....+..+.. +..                  ..|+|  ++.++++|
T Consensus       264 ~~dg~~l~s~s--------~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg  335 (393)
T 4gq1_A          264 GSDGSGILAMC--------KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH  335 (393)
T ss_dssp             TTTTCEEEEEC--------TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred             cCCCCEEEEEe--------CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence             8999999854        499999999988766555443322 222                  23333  44567788


Q ss_pred             ecCCCeEEEEEeCCceec
Q psy3337         279 TMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       279 ~~~dg~i~vwd~~~~~~~  296 (297)
                      +. ||.|++||+.+++.+
T Consensus       336 s~-Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          336 SQ-HGLIQLINTYEKDSN  352 (393)
T ss_dssp             TT-TTEEEEEETTCTTCC
T ss_pred             CC-CCEEEEEECCCCcEE
Confidence            88 999999999887653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=5.9e-26  Score=199.59  Aligned_cols=179  Identities=20%  Similarity=0.273  Sum_probs=156.3

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...|.++.|+  ++.|++|+.|+.|++||+.+++.+..+.+|...|.+++| 
T Consensus       172 l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          172 IISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-  247 (445)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred             EEEEeCCCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence            567889999999 999999998888 999999999996  568999999999999999999999999999999999999 


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                       ++.+|++++.|+.|++||+++++.+..+..|...          +..+.+  ++.+++++        +.|+.|++||+
T Consensus       248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~--~~~~l~~~--------~~d~~i~i~d~  306 (445)
T 2ovr_B          248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR----------VYSLQF--DGIHVVSG--------SLDTSIRVWDV  306 (445)
T ss_dssp             -CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC----------EEEEEE--CSSEEEEE--------ETTSCEEEEET
T ss_pred             -CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc----------eEEEEE--CCCEEEEE--------eCCCeEEEEEC
Confidence             7789999999999999999999998888766421          223445  77888884        45999999999


Q ss_pred             CCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++++++..+..|.. +.++.+  ++.+|++|+. ||.|++||+.+++.+
T Consensus       307 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          307 ETGNCIHTLTGHQSLTSGMEL--KDNILVSGNA-DSTVKIWDIKTGQCL  352 (445)
T ss_dssp             TTCCEEEEECCCCSCEEEEEE--ETTEEEEEET-TSCEEEEETTTCCEE
T ss_pred             CCCCEEEEEcCCcccEEEEEE--eCCEEEEEeC-CCeEEEEECCCCcEE
Confidence            99999999988877 887777  5679999999 999999999887754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=6.4e-26  Score=198.04  Aligned_cols=188  Identities=12%  Similarity=0.201  Sum_probs=159.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC-eeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM-KPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~  167 (297)
                      ..+++.|++|++ ++.+++.+..+. +|...+.+++++  +..|++|+.|+.+++||.... ..+..+.+|...+..+.|
T Consensus       162 lasgs~Dg~v~iWd~~~~~~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~  238 (420)
T 4gga_A          162 LAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  238 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCeEEEEEcCCCcEEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence            557899999999 999999999988 999999888775  679999999999999998764 456788999999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCcee----eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLS----KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|++.++++++.|+.+++||..+++..    .....|.          ..+..++|+|.+..+++...     |+.|+.|
T Consensus       239 ~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~----------~~V~~~~~~p~~~~~la~~~-----gs~D~~I  303 (420)
T 4gga_A          239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ----------GAVKAVAWCPWQSNVLATGG-----GTSDRHI  303 (420)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS----------SCEEEEEECTTCTTEEEEEE-----CTTTCEE
T ss_pred             cCCCCeeeeeeccccceEEeeccccccceeeeeecccC----------CceeeeeeCCCcccEEEEEe-----ecCCCEE
Confidence            999999999999999999999876532    2222222          23345778998776666544     7889999


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEe--cCCCeEEEEEeCCceec
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGT--MFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~dg~i~vwd~~~~~~~  296 (297)
                      ++||+.++++...+..+..+.++.|+|+++.|++++  . |+.|+|||+.+++++
T Consensus       304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~-d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA-QNQLVIWKYPTMAKV  357 (420)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTT-TCCEEEEETTTCCEE
T ss_pred             EEEeCCccccceeeccccceeeeeecCCCCeEEEEEecC-CCEEEEEECCCCcEE
Confidence            999999999999999888899999999999988765  6 899999999998865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.8e-26  Score=194.01  Aligned_cols=184  Identities=16%  Similarity=0.236  Sum_probs=154.0

Q ss_pred             CCCCCCCceEEE-Eee--CCCeEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCe--eeEEeccccCCe
Q psy3337          90 NSIDSKEKNLRF-GFK--TFDSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMK--PLLHIEAHSKEI  162 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~--~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v  162 (297)
                      ..+++.|+.|++ ++.  +++.+..+. +|...|++++|+|+  +++|++|+.|+.|++||+.+++  .+..+..|...|
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v  104 (379)
T 3jrp_A           26 LATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV  104 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred             EEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce
Confidence            457788999999 777  556666776 99999999999987  8999999999999999999887  777888899999


Q ss_pred             eEEEEccC--CCEEEEEeCCCcEEEEEcCCCceee--eeeccCCCCceEEEEeeeeeeeeeCC-------------CCeE
Q psy3337         163 DDVDFSIS--GEQIVSIAKDGKAFVWNSKNGSLSK--ELKWNTPDNIKYLFKRCRYGLVEDSP-------------KRSR  225 (297)
Q Consensus       163 ~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~-------------~~~~  225 (297)
                      .+++|+|+  +.+|++++.|+.|++||++++....  .+..|.          ..+..++|+|             ++..
T Consensus       105 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T 3jrp_A          105 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRK  174 (379)
T ss_dssp             EEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT----------TCEEEEEECCCC----------CTTCE
T ss_pred             EEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC----------CceEEEEEcCccccccccccCCCCCCE
Confidence            99999999  9999999999999999998774332  333332          1234577888             6888


Q ss_pred             EEEeccCcccccCCCCeEEEEeCCCCc----eEEEeccCCC-eEEEEEcCC---CCEEEEEecCCCeEEEEEeCCc
Q psy3337         226 LFTLANPLAQNKRGISYVQQWDVDSGR----LRLAREMKES-LSALAVRDD---GRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~wd~~~~~----~~~~~~~~~~-v~~~~~s~d---g~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +++++        .|+.|++||+++++    ....+..|.. |.+++|+|+   +.+|++++. ||.|++||+.++
T Consensus       175 l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-dg~i~iwd~~~~  241 (379)
T 3jrp_A          175 FVTGG--------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNE  241 (379)
T ss_dssp             EEEEE--------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-TSCEEEEEESST
T ss_pred             EEEEe--------CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-CCEEEEEeCCCC
Confidence            88844        49999999998754    4456777766 999999999   899999999 999999999886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=7.9e-25  Score=188.82  Aligned_cols=240  Identities=12%  Similarity=0.069  Sum_probs=179.4

Q ss_pred             cceeeeCCCccE-EEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIY-VVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~-~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      .|+.|+++++++ ++++.|+.+++|++...........   .       .  .-....                      
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---~-------~--~v~~~~----------------------   80 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---G-------S--SPQGVA----------------------   80 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---S-------S--SEEEEE----------------------
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---C-------C--CccceE----------------------
Confidence            356688888876 5666899999999854332110000   0       0  000000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                       ...+...+..++..++.|++ ++.+++.+..+. .| ..+.+++|+|+++.| ++++.++.|++||+.+++.+..+..+
T Consensus        81 -~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A           81 -VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             -ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             -ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence             01111222345667899999 999998887775 44 467999999999877 78888999999999999988888765


Q ss_pred             cCCeeEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         159 SKEIDDVDFSISGEQI-VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      . .+.+++|+|++++| ++++.++.|++||+++++.+..+..+.           ....++|+|++.++++...     .
T Consensus       158 ~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~g~~l~~~~~-----~  220 (391)
T 1l0q_A          158 R-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-----------APSGIAVNPEGTKAYVTNV-----D  220 (391)
T ss_dssp             S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-----------EEEEEEECTTSSEEEEEEE-----C
T ss_pred             C-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-----------CccceEECCCCCEEEEEec-----C
Confidence            4 57999999999887 567789999999999988776665331           1234789999999988652     2


Q ss_pred             CCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEE-EEEecCCCeEEEEEeCCceec
Q psy3337         238 RGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFV-AVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..++.|++||+.+++.+..+..+..+.+++|+|+|++| ++++. |+.|++||+.+++.+
T Consensus       221 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~-d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          221 KYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-XNTVSVIDTATNTIT  279 (391)
T ss_dssp             SSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEE
T ss_pred             cCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC-CCEEEEEECCCCcEE
Confidence            24899999999999999998888779999999999988 56677 999999999988764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.1e-26  Score=217.34  Aligned_cols=254  Identities=12%  Similarity=0.090  Sum_probs=174.1

Q ss_pred             eeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC--
Q psy3337           4 DVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD--   81 (297)
Q Consensus         4 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--   81 (297)
                      +.|++++++|++|+.|++++||++...........   .   ..   .. |       ....         .+.....  
T Consensus       441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~---~---~~---l~-~-------~~~~---------~h~~~V~sv  494 (902)
T 2oaj_A          441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASF---E---VN---LS-R-------TLNK---------AKELAVDKI  494 (902)
T ss_dssp             CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCE---E---EE---HH-H-------HTTC---------SSSCCEEEE
T ss_pred             ccccccCcEEEEecCCCcEEEEECCCccccCCceE---E---ee---ch-h-------hcCC---------CCCCceeEE
Confidence            34788899999999999999999876421000000   0   00   00 0       0000         0000000  


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCC---------------------------------------------eEEEEecC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFD---------------------------------------------SVQTVFAG  115 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~---------------------------------------------~~~~~~~~  115 (297)
                      ...+..-+..+++.|++|+| +..+++                                             ++..+. +
T Consensus       495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~  573 (902)
T 2oaj_A          495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-A  573 (902)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-C
T ss_pred             EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE-c
Confidence            00011112567889999999 877663                                             255565 8


Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE-----Eec-cccCCeeEEEEc-----cCC---CEEEEEeCCC
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL-----HIE-AHSKEIDDVDFS-----ISG---EQIVSIAKDG  181 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-----~~~-~~~~~v~~~~~s-----p~~---~~l~s~~~d~  181 (297)
                      |.+.|++++||||| +||+|+.|++|+|||++++..+.     .+. +|...|++++|+     |||   .+|++++.|+
T Consensus       574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~  652 (902)
T 2oaj_A          574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG  652 (902)
T ss_dssp             CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred             CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence            99999999999999 99999999999999998877653     343 899999999999     885   8999999999


Q ss_pred             cEEEEEc---CCCceeeeeeccCCCC-ceEEEEeeeee----eee-------------eCCCCeEEEEeccCcccccCCC
Q psy3337         182 KAFVWNS---KNGSLSKELKWNTPDN-IKYLFKRCRYG----LVE-------------DSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       182 ~v~lwd~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~-------------~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      +|++||+   .+|+....+.+|.... ...++....+.    ..+             ..+++..|++.          +
T Consensus       653 tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~----------~  722 (902)
T 2oaj_A          653 EVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG----------F  722 (902)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC----------S
T ss_pred             cEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe----------c
Confidence            9999999   7888888877664110 00001100010    000             12555555442          6


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEE---E------EcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSAL---A------VRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~---~------~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..|++|++.++++......+.. +.++   .      |+++|..|++++. ||+|++|++.+++++
T Consensus       723 ~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~s~p~l~~~  787 (902)
T 2oaj_A          723 DDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEI-NGHLRVFTIPDFKEQ  787 (902)
T ss_dssp             SEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEET-TSEEEEEETTTCCEE
T ss_pred             cceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeC-CCcEEEEECcchHHH
Confidence            7899999999999877755544 6665   5      7889999999999 999999999999876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=8.4e-25  Score=189.06  Aligned_cols=161  Identities=15%  Similarity=0.139  Sum_probs=136.1

Q ss_pred             CCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC---CCEEEEEeCCCcEEEEEcCC
Q psy3337         115 GSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS---GEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       115 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~s~~~d~~v~lwd~~~  190 (297)
                      +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+. +...+.++.|+|.   +.++++++.|+.|++||+++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            6999999999999 77899999999999999999999887776 7778999999984   45999999999999999999


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeE-EEEeccCcccccCCCCeEEEEeCCCCc-eEEEe-----------
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSR-LFTLANPLAQNKRGISYVQQWDVDSGR-LRLAR-----------  257 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~-----------  257 (297)
                      ++.+..+..|..          .+..++|+|++.+ +++        |+.|+.|++||++++. ++..+           
T Consensus       176 ~~~~~~~~~~~~----------~v~~~~~~~~~~~ll~~--------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T 4a11_B          176 GSCSHILQGHRQ----------EILAVSWSPRYDYILAT--------ASADSRVKLWDVRRASGCLITLDQHNGKKSQAV  237 (408)
T ss_dssp             SCCCEEECCCCS----------CEEEEEECSSCTTEEEE--------EETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred             cceeeeecCCCC----------cEEEEEECCCCCcEEEE--------EcCCCcEEEEECCCCCcccccccccccccceee
Confidence            988888876642          2345789999985 666        4459999999998754 33433           


Q ss_pred             ----ccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         258 ----EMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       258 ----~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                          ..|.. |.+++|+|++++|++++. ||.|++||+.+++.
T Consensus       238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~  279 (408)
T 4a11_B          238 ESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSNGEN  279 (408)
T ss_dssp             TTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCB
T ss_pred             ccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECCCCcc
Confidence                34444 999999999999999999 99999999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=3.5e-25  Score=208.27  Aligned_cols=235  Identities=12%  Similarity=0.176  Sum_probs=183.0

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcc-cccchhhhhccCCCcccccccCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKR-KEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      +|..|++++++|++++.|+.++||++..........            ++... ....                      
T Consensus        59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~------------~~~~~v~~~~----------------------  104 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE------------AHPDYIRSIA----------------------  104 (814)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE------------CCSSCEEEEE----------------------
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe------------cCCCCEEEEE----------------------
Confidence            466799999999999999999999986432210000            00000 0000                      


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCC-CeEEEEecCCCCcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEecc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTF-DSVQTVFAGSESLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEA  157 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~-~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  157 (297)
                       ...+.+ ...+++.|++|++ ++.++ .....+. +|...|.+++|+| +++.|++++.|+.|++||+.+++....+..
T Consensus       105 -~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  181 (814)
T 3mkq_A          105 -VHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT  181 (814)
T ss_dssp             -ECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred             -EeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence             000111 1347788999999 88877 4555666 9999999999999 889999999999999999998887777766


Q ss_pred             cc-CCeeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         158 HS-KEIDDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       158 ~~-~~v~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      +. ..+.+++|+|  ++.+|++++.|+.|++||+.+++.+..+..|..          .+..++|+|++.++++++    
T Consensus       182 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~----  247 (814)
T 3mkq_A          182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS----------NVSFAVFHPTLPIIISGS----  247 (814)
T ss_dssp             CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS----------CEEEEEECSSSSEEEEEE----
T ss_pred             CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC----------CEEEEEEcCCCCEEEEEe----
Confidence            55 8899999999  999999999999999999999998888876642          233578999999999854    


Q ss_pred             cccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCC--EEEEEecCCCeEEEEEeCCc
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGR--FVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~--~l~~~~~~dg~i~vwd~~~~  293 (297)
                          .|+.|++||+.+++.+..+..+.. +.+++|+|+|.  +++++.  ++.+.+|++...
T Consensus       248 ----~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  303 (814)
T 3mkq_A          248 ----EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF--DNGFTVLSLGND  303 (814)
T ss_dssp             ----TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE--TTEEEEEECSCC
T ss_pred             ----CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe--CCCEEEEEcCCC
Confidence                499999999999999999988766 99999999987  455555  778999987654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=1.2e-24  Score=182.18  Aligned_cols=192  Identities=12%  Similarity=0.178  Sum_probs=154.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC-eeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM-KPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~  167 (297)
                      ..+++.|++|++ +..+++.+..+. +|...+.++.  +++..+++++.++.+++|+.... ..+..+.+|...+..+.|
T Consensus        82 l~sgs~Dg~v~iw~~~~~~~~~~~~-~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           82 LAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCcEEEeecCCceeEEEec-CccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            458899999999 999999999988 9999876654  55679999999999999998765 456788899999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      ++++++|++++.|++|++||+++++...........      ....+..+.++|++..++....     ++.++.|++||
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~i~lwd  227 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ------HQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWN  227 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC------CCSCEEEEEECTTSTTEEEEEE-----CTTTCEEEEEE
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceeeecc------cCCceEEEEecCCCCcEEEEEe-----cCCCCEEEEEe
Confidence            999999999999999999999877543222111000      0112334667887766665443     77899999999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEe--cCCCeEEEEEeCCceec
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGT--MFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~dg~i~vwd~~~~~~~  296 (297)
                      ...............+..+.|+|++..+++++  . |+.|++||+.+++++
T Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~-d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA-QNQLVIWKYPTMAKV  277 (318)
T ss_dssp             TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTT-TCCEEEEETTTCCEE
T ss_pred             cccccccccccceeeeeeeeecccccceEEEEEcC-CCEEEEEECCCCcEE
Confidence            99988888877777799999999999887654  6 999999999998865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-25  Score=190.32  Aligned_cols=181  Identities=14%  Similarity=0.046  Sum_probs=149.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC---------CCeeeEEec-cc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP---------KMKPLLHIE-AH  158 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~---------~~~~~~~~~-~~  158 (297)
                      ..+++.|++|++ ++.+++.+..+.   ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|
T Consensus        51 l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  124 (343)
T 3lrv_A           51 CMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS  124 (343)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred             EEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence            458999999999 999999888875   456778889988   9999999999999765         444344443 67


Q ss_pred             cCCeeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         159 SKEIDDVDFSI--SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       159 ~~~v~~~~~sp--~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      ...|.+++|+|  ++++|++++.|++|++||+++++.+.....+..         ..+..++|+|++.+|++        
T Consensus       125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---------~~i~~~~~~pdg~~las--------  187 (343)
T 3lrv_A          125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD---------VEYSSGVLHKDSLLLAL--------  187 (343)
T ss_dssp             SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS---------CCCCEEEECTTSCEEEE--------
T ss_pred             CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC---------CceEEEEECCCCCEEEE--------
Confidence            78899999999  999999999999999999999888655543321         12345889999999998        


Q ss_pred             cCCCCeEEEEeCCCCceE-EEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         237 KRGISYVQQWDVDSGRLR-LAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~-~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |+.|+.|++||+++++.+ ..+.. |.. |.+++|+|+|.+|++++. + .|++||+++++.
T Consensus       188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~~  247 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDVG  247 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSSTT
T ss_pred             EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCCc
Confidence            555999999999998877 77777 666 999999999999999995 5 999999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=1.4e-24  Score=183.16  Aligned_cols=195  Identities=12%  Similarity=0.123  Sum_probs=155.2

Q ss_pred             CCCCCCCceEEE-EeeCCC----eEEEEecCCCCcEEEEEEec--CCCEEEEEcCCCcEEEEeCCCC---------eeeE
Q psy3337          90 NSIDSKEKNLRF-GFKTFD----SVQTVFAGSESLQRVVRLSR--NGDLMVTGGTDGHLRLWSFPKM---------KPLL  153 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~----~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~---------~~~~  153 (297)
                      ..+++.|+.|++ ++.++.    ....+. +|...|++++|+|  ++++|++|+.|+.|++||++++         +.+.
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~  104 (351)
T 3f3f_A           26 VATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC  104 (351)
T ss_dssp             EEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEE
T ss_pred             EEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceee
Confidence            457888999999 887663    555666 9999999999999  6999999999999999999876         5678


Q ss_pred             EeccccCCeeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCC---ceEEEEeeeeeeeeeCCC---CeE
Q psy3337         154 HIEAHSKEIDDVDFSIS--GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDN---IKYLFKRCRYGLVEDSPK---RSR  225 (297)
Q Consensus       154 ~~~~~~~~v~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~---~~~  225 (297)
                      .+..|...|.+++|+|+  +.+|++++.|+.|++||+++++.+..+.......   .........+..++|+|+   +..
T Consensus       105 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  184 (351)
T 3f3f_A          105 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK  184 (351)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE
T ss_pred             eecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE
Confidence            88899999999999999  9999999999999999999887655443211000   000001123445788997   888


Q ss_pred             EEEeccCcccccCCCCeEEEEeCCCCce--EEEeccCCC-eEEEEEcCCC----CEEEEEecCCCeEEEEEeCCce
Q psy3337         226 LFTLANPLAQNKRGISYVQQWDVDSGRL--RLAREMKES-LSALAVRDDG----RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~-v~~~~~s~dg----~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +++.+        .++.+.+|+...++.  +..+..|.. |.+++|+|++    .+|++++. ||.|++||+.++.
T Consensus       185 l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~~~  251 (351)
T 3f3f_A          185 LAVSA--------LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK-DGRIRIFKITEKL  251 (351)
T ss_dssp             EEEEE--------TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET-TSCEEEEEEEECC
T ss_pred             EEEec--------CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC-CCeEEEEeCCCCc
Confidence            88854        499998888887765  666777766 9999999998    89999999 9999999998753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.1e-25  Score=193.07  Aligned_cols=161  Identities=10%  Similarity=0.018  Sum_probs=137.1

Q ss_pred             CCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCC--CCeeeEEec--cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy3337         116 SESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFP--KMKPLLHIE--AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      |...|++++|+|++++| ++|+.|+.|++||+.  +++.+..+.  .|...|.+++|+|++++|++++.|+.|++|++.+
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS  180 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence            33479999999999996 899999999999998  888887776  5678899999999999999999999999999987


Q ss_pred             Cceee----eeeccCCCCceEEEEeeeeeeeeeCCC---CeEEEEeccCcccccCCCCeEEEEeCCCCceEEE-eccCCC
Q psy3337         191 GSLSK----ELKWNTPDNIKYLFKRCRYGLVEDSPK---RSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA-REMKES  262 (297)
Q Consensus       191 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~~~  262 (297)
                      +....    .+..|.          ..+..++|+|+   +.+|++++        .|+.|++||+.+++++.. +.+|..
T Consensus       181 ~~~~~~~~~~~~~h~----------~~v~~~~~sp~~~~~~~l~s~~--------~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          181 IPEEKFTQEPILGHV----------SMLTDVHLIKDSDGHQFIITSD--------RDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             CCCSSCCCCCSEECS----------SCEEEEEEEECTTSCEEEEEEE--------TTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             cccccccceeeeccc----------CceEEEEEcCCCCCCcEEEEEc--------CCCcEEEEECCCCceeeeeecCCCC
Confidence            76543    444443          23445889999   99999854        499999999999888877 556666


Q ss_pred             -eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         263 -LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       263 -v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       |.+++|+ ++++|++++. |+.|++||+.+++.+
T Consensus       243 ~v~~~~~s-d~~~l~s~~~-d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGG-DDKIFAWDWKTGKNL  275 (450)
T ss_dssp             CEEEEEEC-STTEEEEEES-SSEEEEEETTTCCEE
T ss_pred             ceEEEEEC-CCCEEEEEeC-CCeEEEEECCCCcEe
Confidence             9999999 9999999999 999999999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=3.8e-24  Score=184.54  Aligned_cols=185  Identities=12%  Similarity=0.098  Sum_probs=153.7

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      ..+++.|++|++ +..+++.+..+. .+. .+.+++|+|++++|+ +++.++.|++||+.+++.+..+..+ ..+.+++|
T Consensus        47 ~~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~  123 (391)
T 1l0q_A           47 YVANAHSNDVSIIDTATNNVIATVP-AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLAL  123 (391)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEE-CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEE
T ss_pred             EEECCCCCeEEEEECCCCeEEEEEE-CCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEE
Confidence            346668899999 999999888886 444 899999999999775 5557799999999999988877754 46899999


Q ss_pred             ccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         168 SISGEQI-VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       168 sp~~~~l-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      +|++++| ++++.|+.|++||+.+++.+..+..+..           ...++|+|+++.++..       ++.++.|++|
T Consensus       124 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~dg~~l~~~-------~~~~~~v~~~  185 (391)
T 1l0q_A          124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-----------PKGIAVTPDGTKVYVA-------NFDSMSISVI  185 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-----------EEEEEECTTSSEEEEE-------ETTTTEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-----------cceEEECCCCCEEEEE-------eCCCCEEEEE
Confidence            9999977 6778899999999999988877765431           1347799999988543       3458999999


Q ss_pred             eCCCCceEEEeccCCCeEEEEEcCCCCEEEEEe---cCCCeEEEEEeCCceec
Q psy3337         247 DVDSGRLRLAREMKESLSALAVRDDGRFVAVGT---MFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---~~dg~i~vwd~~~~~~~  296 (297)
                      |+.+++.+..+..+..+.+++|+|+|++|++++   . ++.|++||+.+++.+
T Consensus       186 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY-FNTVSMIDTGTNKIT  237 (391)
T ss_dssp             ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS-CCEEEEEETTTTEEE
T ss_pred             ECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcC-CCcEEEEECCCCeEE
Confidence            999999888888776799999999999999888   6 899999999987754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=3e-25  Score=189.09  Aligned_cols=182  Identities=12%  Similarity=0.212  Sum_probs=152.2

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEe----cCCCCcEEEEEEecC----CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCe
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVF----AGSESLQRVVRLSRN----GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI  162 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~----~~h~~~v~~~~~s~~----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  162 (297)
                      ++..++.|++ +..+++.+..+.    ..|...|++++|+|+    +++|++|+.|+.|++||+.+++.+..+.+|...|
T Consensus        39 ~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i  118 (366)
T 3k26_A           39 ATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI  118 (366)
T ss_dssp             EEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCE
T ss_pred             EECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcE
Confidence            4445568999 888887766665    126688999999999    6799999999999999999999999999999999


Q ss_pred             eEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeee---eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         163 DDVDFSI-SGEQIVSIAKDGKAFVWNSKNGSLSKEL---KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       163 ~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      .+++|+| ++.+|++++.|+.|++||+++++.+..+   ..|.          ..+..++|+|++.+|++++.       
T Consensus       119 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~-------  181 (366)
T 3k26_A          119 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR----------DEVLSADYDLLGEKIMSCGM-------  181 (366)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS----------SCEEEEEECTTSSEEEEEET-------
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc----------CceeEEEECCCCCEEEEecC-------
Confidence            9999999 9999999999999999999999888777   3332          22445889999999998554       


Q ss_pred             CCCeEEEEeCCCCceEEEec----------------------------cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         239 GISYVQQWDVDSGRLRLARE----------------------------MKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~----------------------------~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                       |+.|++||+++++.+..+.                            .|.. |.+++|+  +.+|++++. |+.|++||
T Consensus       182 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~~i~~wd  257 (366)
T 3k26_A          182 -DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC-ENAIVCWK  257 (366)
T ss_dssp             -TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS-SSEEEEEE
T ss_pred             -CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec-CCEEEEEe
Confidence             9999999999866543333                            2555 9999998  789999999 99999999


Q ss_pred             eCCce
Q psy3337         290 AFSLQ  294 (297)
Q Consensus       290 ~~~~~  294 (297)
                      +.+++
T Consensus       258 ~~~~~  262 (366)
T 3k26_A          258 PGKME  262 (366)
T ss_dssp             ESSTT
T ss_pred             CCCcc
Confidence            98764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=1.7e-24  Score=189.66  Aligned_cols=185  Identities=14%  Similarity=0.194  Sum_probs=153.7

Q ss_pred             CcCCCCCCCceEEE-EeeC----------CCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCee----
Q psy3337          88 ILNSIDSKEKNLRF-GFKT----------FDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKP----  151 (297)
Q Consensus        88 ~l~~~~~~d~~i~~-~~~~----------~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~----  151 (297)
                      .+..+++.|+.|++ ++.+          ...+..+. +|...|++++|+|++. +|++|+.||.|++||+.++..    
T Consensus       142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  220 (430)
T 2xyi_A          142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV  220 (430)
T ss_dssp             EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred             cEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence            34567888999999 8776          56677777 9999999999999987 999999999999999987321    


Q ss_pred             ---eEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCC---ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe
Q psy3337         152 ---LLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNG---SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS  224 (297)
Q Consensus       152 ---~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  224 (297)
                         ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++   ..+..+..|.          ..+..++|+|++.
T Consensus       221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------~~v~~i~~~p~~~  290 (430)
T 2xyi_A          221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT----------AEVNCLSFNPYSE  290 (430)
T ss_dssp             EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS----------SCEEEEEECSSCT
T ss_pred             eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC----------CCeEEEEeCCCCC
Confidence               456778999999999999 7789999999999999999976   4555555443          2344588999987


Q ss_pred             E-EEEeccCcccccCCCCeEEEEeCCC-CceEEEeccCCC-eEEEEEcCCCC-EEEEEecCCCeEEEEEeCC
Q psy3337         225 R-LFTLANPLAQNKRGISYVQQWDVDS-GRLRLAREMKES-LSALAVRDDGR-FVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       225 ~-l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~-v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~  292 (297)
                      . +++        |+.|+.|++||+++ .+++..+..|.. |.+++|+|++. +|++++. |+.|+|||+.+
T Consensus       291 ~~l~t--------g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~-d~~i~iwd~~~  353 (430)
T 2xyi_A          291 FILAT--------GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLSK  353 (430)
T ss_dssp             TEEEE--------EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET-TSCCEEEEGGG
T ss_pred             CEEEE--------EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC-CCcEEEEeCCC
Confidence            4 656        45599999999998 567788887766 99999999985 6899999 99999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-24  Score=202.92  Aligned_cols=185  Identities=16%  Similarity=0.236  Sum_probs=155.0

Q ss_pred             CCCCCCCceEEE-Eee--CCCeEEEEecCCCCcEEEEEEecC--CCEEEEEcCCCcEEEEeCCCCe--eeEEeccccCCe
Q psy3337          90 NSIDSKEKNLRF-GFK--TFDSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMK--PLLHIEAHSKEI  162 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~--~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v  162 (297)
                      ..+++.|++|++ +..  +++.+..+. +|...|++++|+|+  +++|++|+.||.|++||+.+++  .+..+.+|...|
T Consensus        24 latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V  102 (753)
T 3jro_A           24 LATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV  102 (753)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred             EEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence            457788999999 777  455666776 99999999999998  9999999999999999999886  677888999999


Q ss_pred             eEEEEccC--CCEEEEEeCCCcEEEEEcCCCcee--eeeeccCCCCceEEEEeeeeeeeeeCC-------------CCeE
Q psy3337         163 DDVDFSIS--GEQIVSIAKDGKAFVWNSKNGSLS--KELKWNTPDNIKYLFKRCRYGLVEDSP-------------KRSR  225 (297)
Q Consensus       163 ~~~~~sp~--~~~l~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~-------------~~~~  225 (297)
                      .+++|+|+  +.+|++++.||.|++||++++...  ..+..|.          ..+..++|+|             ++..
T Consensus       103 ~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~----------~~v~~l~~~p~~~~~~~~~~~~~d~~~  172 (753)
T 3jro_A          103 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRK  172 (753)
T ss_dssp             EEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS----------SCEEEEEECCCC---------CGGGCC
T ss_pred             EEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC----------CceEEEEecCcccccccccccCCCCCE
Confidence            99999999  999999999999999999877433  2333332          2234577888             5778


Q ss_pred             EEEeccCcccccCCCCeEEEEeCCCC----ceEEEeccCCC-eEEEEEcCC---CCEEEEEecCCCeEEEEEeCCce
Q psy3337         226 LFTLANPLAQNKRGISYVQQWDVDSG----RLRLAREMKES-LSALAVRDD---GRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~wd~~~~----~~~~~~~~~~~-v~~~~~s~d---g~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +++        |+.|+.|++||++++    .+...+.+|.. |.+++|+|+   +.+|++++. ||.|++||+.+++
T Consensus       173 l~s--------gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~I~iwd~~~~~  240 (753)
T 3jro_A          173 FVT--------GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQ  240 (753)
T ss_dssp             EEE--------EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSCEEEEEESSSS
T ss_pred             EEE--------EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCEEEEecCCCCC
Confidence            887        455999999999876    55667777776 999999999   999999999 9999999998863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=9.5e-25  Score=184.68  Aligned_cols=232  Identities=10%  Similarity=0.050  Sum_probs=171.3

Q ss_pred             cceeeeCCCc-cEEEeccCCceeeEEE-eeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCC
Q psy3337           2 NCDVHSNGKN-IYVVAGQENSNQLYKI-TAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         2 ~~~~~~~~~~-~~~~~g~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      +|..|+++++ +|++|+.|+.+++|++ .......   . ....+    ...-  ....-                    
T Consensus        60 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~-~~~~~----~~~v--~~l~~--------------------  109 (342)
T 1yfq_A           60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA---L-TNNEA----NLGI--CRICK--------------------  109 (342)
T ss_dssp             EEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE---C-BSCCC----CSCE--EEEEE--------------------
T ss_pred             EEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEe---c-cccCC----CCce--EEEEe--------------------
Confidence            4566888889 9999999999999998 5432210   0 00000    0000  00000                    


Q ss_pred             CCCCCCCCCcCCCCCCCceEEE-EeeC---------CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRF-GFKT---------FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-  148 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~-~~~~---------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-  148 (297)
                          .+ .-+..+++.|+.|++ ++.+         ++.+..+  .|...|.+++|+|++  |++++.|+.|++||+++ 
T Consensus       110 ----~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~  180 (342)
T 1yfq_A          110 ----YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             ----ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCC
T ss_pred             ----CC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEEEecCCc--EEEEeCCCeEEEEECCcc
Confidence                00 112457888999999 7776         6665555  488899999999987  99999999999999987 


Q ss_pred             Ce--eeEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCC------ceeeeeeccCCCCceEEEEeeeeeeeee
Q psy3337         149 MK--PLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSKNG------SLSKELKWNTPDNIKYLFKRCRYGLVED  219 (297)
Q Consensus       149 ~~--~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (297)
                      +.  .......|...|.+++|+| ++++|++++.|+.|++|++...      +....+..|...... .-....+..++|
T Consensus       181 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~  259 (342)
T 1yfq_A          181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD-TNLAYPVNSIEF  259 (342)
T ss_dssp             TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC-CSSCCCEEEEEE
T ss_pred             ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc-cccceeEEEEEE
Confidence            54  3344556888999999999 9999999999999999999876      667777666421000 000113445889


Q ss_pred             CCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CC-eEEEEEcCCCCEEEEEecCCCe
Q psy3337         220 SPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ES-LSALAVRDDGRFVAVGTMFTGS  284 (297)
Q Consensus       220 s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~-v~~~~~s~dg~~l~~~~~~dg~  284 (297)
                      +|++.+|++++        .|+.|++||+.+++.+..+..| .. |.+++  |++++|++++. ||.
T Consensus       260 s~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~-Dg~  315 (342)
T 1yfq_A          260 SPRHKFLYTAG--------SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATS-DDT  315 (342)
T ss_dssp             CTTTCCEEEEE--------TTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEE-CTH
T ss_pred             cCCCCEEEEec--------CCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEec-CCc
Confidence            99999999854        4999999999999999999987 66 99999  99999999999 998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.6e-23  Score=183.08  Aligned_cols=187  Identities=10%  Similarity=0.107  Sum_probs=154.5

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      ..+++.|+.|++ ++.+++.+..+. .|...+.+++|+|+++.++ +++.|+.|++||+.+++.+..+..+ ..+.+++|
T Consensus       184 ~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~  261 (433)
T 3bws_A          184 WVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLL  261 (433)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEE
T ss_pred             EEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEE
Confidence            456778899999 999999988888 8999999999999998874 5568999999999999988888754 45999999


Q ss_pred             ccCCCEEEEEe--------CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         168 SISGEQIVSIA--------KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       168 sp~~~~l~s~~--------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      +|++++|++++        .|+.|++||+.+++.+..+...           .....++|+|+++.++..       ++.
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~l~~~-------~~~  323 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-----------GNKRHIVSGNTENKIYVS-------DMC  323 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-----------ECEEEEEECSSTTEEEEE-------ETT
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-----------CCcceEEECCCCCEEEEE-------ecC
Confidence            99999999887        5889999999988776554221           123357899999766554       345


Q ss_pred             CCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecC--------------CCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMF--------------TGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~--------------dg~i~vwd~~~~~~~  296 (297)
                      ++.|++||+.+++.+..+.....+.+++|+|+|++|++++..              ||.|++||+.+++.+
T Consensus       324 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~  394 (433)
T 3bws_A          324 CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK  394 (433)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence            899999999999988888766669999999999999888762              259999999988764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=7.8e-24  Score=185.04  Aligned_cols=243  Identities=15%  Similarity=0.105  Sum_probs=179.7

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..+++++..|++++.|+.+++|++..........  ...   ..      -...                       .
T Consensus       173 ~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~---~~------~~~~-----------------------~  218 (433)
T 3bws_A          173 ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD--LTG---KW------SKIL-----------------------L  218 (433)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSS---SS------EEEE-----------------------E
T ss_pred             eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc--CCC---CC------eeEE-----------------------E
Confidence            345677888999999999999999985422110000  000   00      0000                       0


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc--------CCCcEEEEeCCCCeee
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG--------TDGHLRLWSFPKMKPL  152 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--------~d~~i~iwd~~~~~~~  152 (297)
                      ...+...+..++..|+.|++ ++.+++.+..+. . ...+.+++|+|++++|++++        .|+.|++||+.+++.+
T Consensus       219 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~  296 (433)
T 3bws_A          219 YDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-K-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI  296 (433)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEEECC-C-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-C-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence            00111122345667899999 988888877775 3 45589999999999999887        5889999999998877


Q ss_pred             EEeccccCCeeEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc
Q psy3337         153 LHIEAHSKEIDDVDFSISGEQI-VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       153 ~~~~~~~~~v~~~~~sp~~~~l-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      ..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+....           ....++|+|+++++++...
T Consensus       297 ~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-----------~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          297 DTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD-----------KPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS-----------SEEEEEECTTSSEEEEEEC
T ss_pred             eec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC-----------CCCeEEEcCCCCEEEEEec
Confidence            665 466689999999999755 566899999999999888777664221           1235889999998888765


Q ss_pred             C-------cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         232 P-------LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       232 ~-------~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .       .+++|+.||.|++||+.+++.+..+..+..+.+++|+|+|++|++++..|+.|++|++..
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            2       455666789999999999999998888777999999999999987763399999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.5e-24  Score=188.15  Aligned_cols=148  Identities=11%  Similarity=0.127  Sum_probs=120.2

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-------eEEe----ccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-------LLHI----EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      .|.+++|||||++|++|+.||+|+|||+.++..       +.++    .+|...|.+++|+|+|  +++++.|++|++||
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd  208 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMT  208 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEE
Confidence            488999999999999999999999999988752       5666    6788899999999999  88889999999999


Q ss_pred             cCCCce---eeeee-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-
Q psy3337         188 SKNGSL---SKELK-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-  262 (297)
Q Consensus       188 ~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-  262 (297)
                      +..+..   ..++. .|.          ..+..++|+  +..|+++        + ++.|++||+.+++......+|.. 
T Consensus       209 ~~~~~~~~~~~tL~~~h~----------~~V~svaFs--g~~LASa--------~-~~tIkLWd~~~~~~~~~~~gh~~~  267 (588)
T 2j04_A          209 VSASSHQPVSRMIQNASR----------RKITDLKIV--DYKVVLT--------C-PGYVHKIDLKNYSISSLKTGSLEN  267 (588)
T ss_dssp             CCSSSSCCCEEEEECCCS----------SCCCCEEEE--TTEEEEE--------C-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred             CCCCccccceeeeccccc----------CcEEEEEEE--CCEEEEE--------e-CCeEEEEECCCCeEEEEEcCCCce
Confidence            987663   23442 332          123457788  5777774        2 68999999998877444435665 


Q ss_pred             eEEEEE--cCCCCEEEEEecCCCeEEEEEeC
Q psy3337         263 LSALAV--RDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       263 v~~~~~--s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      |..++|  +||+..|+++.+ ||+ ++|...
T Consensus       268 V~~va~~~s~d~~~La~a~e-dG~-klw~~d  296 (588)
T 2j04_A          268 FHIIPLNHEKESTILLMSNK-TSY-KVLLED  296 (588)
T ss_dssp             CCEEEETTCSSCEEEEECSS-CEE-EEEESS
T ss_pred             EEEEEeeeCCCCCEEEEEcC-CCC-EEEeec
Confidence            999999  999999999999 999 999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=5.3e-24  Score=181.37  Aligned_cols=189  Identities=13%  Similarity=0.128  Sum_probs=138.8

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEE--ecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc--------
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRL--SRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS--------  159 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~--s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------  159 (297)
                      .+++.|+.|++ ++.+++.+. +. +|...|.+++|  +|++++|++++.|+.|++||+++++.+..+..|.        
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  179 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQ-IA-QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI  179 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEE-EE-ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE
T ss_pred             EEEcCCCcEEEEEcCCCCcee-ec-cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec
Confidence            35556666666 666555554 34 79999999999  8899999999999999999998887766665433        


Q ss_pred             ---------------------------------CCeeEEEEccCCCE----EEEEeCCCcEEEEEcCCC---ceeeeeec
Q psy3337         160 ---------------------------------KEIDDVDFSISGEQ----IVSIAKDGKAFVWNSKNG---SLSKELKW  199 (297)
Q Consensus       160 ---------------------------------~~v~~~~~sp~~~~----l~s~~~d~~v~lwd~~~~---~~~~~~~~  199 (297)
                                                       ..+.++.+.++...    +++++.|+.|++||++..   ..+..+..
T Consensus       180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence                                             23344555444433    888899999999998876   44555555


Q ss_pred             cCCCCc--eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEE
Q psy3337         200 NTPDNI--KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVA  276 (297)
Q Consensus       200 ~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~  276 (297)
                      |.....  ........+..++|+|++.+|++++        .|+.|++||+.+++++..+..|.. |.+++|+|+|++|+
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG--------SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA  331 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEE--------TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEc--------cCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence            431100  0000111356789999999999954        499999999999999999998776 99999999999999


Q ss_pred             EEecCCCeEEEEEe
Q psy3337         277 VGTMFTGSVFVYIA  290 (297)
Q Consensus       277 ~~~~~dg~i~vwd~  290 (297)
                      +++. |+..+.|++
T Consensus       332 ~~s~-d~~~~~~~~  344 (368)
T 3mmy_A          332 YASS-YDWSKGHEF  344 (368)
T ss_dssp             EEEC-CCSTTCGGG
T ss_pred             EEec-ccccccccc
Confidence            9998 876555544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=1.3e-22  Score=168.67  Aligned_cols=190  Identities=13%  Similarity=0.070  Sum_probs=137.5

Q ss_pred             CceEEE-EeeCC---CeEEEEecCCCC-------------------------cEEEEEEecC----CCEEEEEcC-----
Q psy3337          96 EKNLRF-GFKTF---DSVQTVFAGSES-------------------------LQRVVRLSRN----GDLMVTGGT-----  137 (297)
Q Consensus        96 d~~i~~-~~~~~---~~~~~~~~~h~~-------------------------~v~~~~~s~~----g~~l~s~~~-----  137 (297)
                      ..+|++ ++.++   +.++++. +|+.                         .|.+++|+||    ++++++++.     
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~  140 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVL  140 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEE
Confidence            456777 66666   5555555 5554                         5667777778    777776553     


Q ss_pred             ---------------CCcEEEEeC-CCCeeeEEeccccCCeeEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceeeeee
Q psy3337         138 ---------------DGHLRLWSF-PKMKPLLHIEAHSKEIDDVDFSI---SGEQIVSIAKDGKAFVWNSKNGSLSKELK  198 (297)
Q Consensus       138 ---------------d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~s~~~d~~v~lwd~~~~~~~~~~~  198 (297)
                                     |+.|++|++ .+++.+..+..|...++.++|+|   ++.+|++++.|++|+|||+.+|+.++++.
T Consensus       141 ~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          141 GLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             EETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence                           888999998 45777788888998999999998   77999999999999999999999999997


Q ss_pred             ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC----cccccCCCCeEEEEeCCCCceEEEe-----ccCCC-eEEEEE
Q psy3337         199 WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP----LAQNKRGISYVQQWDVDSGRLRLAR-----EMKES-LSALAV  268 (297)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----~~~~g~~d~~i~~wd~~~~~~~~~~-----~~~~~-v~~~~~  268 (297)
                      .|...    .   ..+..++|+|+|.++++.+.+    .+++|+.|++|++||..+++.+..+     .+|.. +.+..+
T Consensus       221 g~~~~----v---~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~  293 (356)
T 2w18_A          221 IDDSY----Q---ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV  293 (356)
T ss_dssp             CCC----------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred             CCCcc----e---eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence            55311    0   123346799999998876653    4678999999999999999887665     24433 444444


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                        ++.++++++. |++|+|||+.+++.+
T Consensus       294 --sg~~lASgS~-DgTIkIWDl~tGk~l  318 (356)
T 2w18_A          294 --KDHCAAAILT-SGTIAIWDLLLGQCT  318 (356)
T ss_dssp             --ETTEEEEEET-TSCEEEEETTTCSEE
T ss_pred             --CCCEEEEEcC-CCcEEEEECCCCcEE
Confidence              4889999999 999999999998865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=1.7e-21  Score=166.32  Aligned_cols=179  Identities=13%  Similarity=0.120  Sum_probs=130.8

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      +++.+ .+++ +..+++...... .+  .+..+++.++++.+ ++++.|++|++||+.+++.+..+. |...|.+++|++
T Consensus        36 ~g~~~-~~~iw~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~  110 (355)
T 3vu4_A           36 LSTLK-SFEIYNVHPVAHIMSQE-MR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSR  110 (355)
T ss_dssp             EECSS-EEEEEEETTEEEEEEEE-CS--CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECS
T ss_pred             EEcCC-EEEEEecCCcceeeeee-cC--CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcC
Confidence            45555 4678 777665554443 22  47788999988877 567888999999999999988886 666899999987


Q ss_pred             CCC-----------------------------------EEEE--EeCCCcEEEEEcCCCce----------------eee
Q psy3337         170 SGE-----------------------------------QIVS--IAKDGKAFVWNSKNGSL----------------SKE  196 (297)
Q Consensus       170 ~~~-----------------------------------~l~s--~~~d~~v~lwd~~~~~~----------------~~~  196 (297)
                      +..                                   +++.  ++.||.|++||+.++..                +..
T Consensus       111 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~  190 (355)
T 3vu4_A          111 EFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL  190 (355)
T ss_dssp             SEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred             CEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence            631                                   1222  23445555555544320                222


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe-EEEEeCCCCceEEEec-c-CCC-eEEEEEcCCC
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY-VQQWDVDSGRLRLARE-M-KES-LSALAVRDDG  272 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~-i~~wd~~~~~~~~~~~-~-~~~-v~~~~~s~dg  272 (297)
                      +..|.          ..+..++|+|++.+|++++        .|++ |++||+++++++..+. + |.. |.+++|+|+|
T Consensus       191 ~~~h~----------~~v~~~~~s~~g~~l~s~s--------~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~  252 (355)
T 3vu4_A          191 IKAHT----------NPIKMVRLNRKSDMVATCS--------QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG  252 (355)
T ss_dssp             ECCCS----------SCEEEEEECTTSSEEEEEE--------TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred             EEccC----------CceEEEEECCCCCEEEEEe--------CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence            33222          2355689999999999954        5998 9999999999999998 4 555 9999999999


Q ss_pred             CEEEEEecCCCeEEEEEeCCce
Q psy3337         273 RFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++|++++. |++|++||+.+..
T Consensus       253 ~~l~s~s~-d~~v~iw~~~~~~  273 (355)
T 3vu4_A          253 SKLAVVSD-KWTLHVFEIFNDQ  273 (355)
T ss_dssp             CEEEEEET-TCEEEEEESSCCS
T ss_pred             CEEEEEEC-CCEEEEEEccCCC
Confidence            99999999 9999999997653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=7.7e-22  Score=172.78  Aligned_cols=160  Identities=12%  Similarity=0.003  Sum_probs=126.4

Q ss_pred             CCCCcEEEEEEecCCCEEE----EEcCCCcEEEEeCCCC--------ee---eEEeccccCCeeEEEEccC-CCEEEEEe
Q psy3337         115 GSESLQRVVRLSRNGDLMV----TGGTDGHLRLWSFPKM--------KP---LLHIEAHSKEIDDVDFSIS-GEQIVSIA  178 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~----s~~~d~~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~sp~-~~~l~s~~  178 (297)
                      .+...|++++|+|+|++|+    +|+.|+.|+|||+.++        ++   +..+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            6778899999999999999    8899999999998654        22   4566779999999999997 88999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec
Q psy3337         179 KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE  258 (297)
Q Consensus       179 ~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~  258 (297)
                      .|++|++||++++..+.....|.          ..+..++|+|+|++|+++        +.|+.|++||++ ++....+.
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~----------~~v~~v~wspdg~~lasg--------s~dg~v~iwd~~-~~~~~~~~  230 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPST----------VAVTSVCWSPKGKQLAVG--------KQNGTVVQYLPT-LQEKKVIP  230 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGG----------GCEEEEEECTTSSCEEEE--------ETTSCEEEECTT-CCEEEEEC
T ss_pred             CCCeEEEEEcCCCcceeeccCCC----------CceeEEEEcCCCCEEEEE--------cCCCcEEEEccC-Cccccccc
Confidence            99999999999886554444332          234458899999999994        459999999999 66555554


Q ss_pred             cC-------C-CeEEEEEcCCCCEEEEEecCCC------eEEEEEeCCc
Q psy3337         259 MK-------E-SLSALAVRDDGRFVAVGTMFTG------SVFVYIAFSL  293 (297)
Q Consensus       259 ~~-------~-~v~~~~~s~dg~~l~~~~~~dg------~i~vwd~~~~  293 (297)
                      .+       . .|.+++|++++.++++.+..+|      .+++|++.+.
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            32       1 4899999999888865443243      3899999764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=2.1e-21  Score=169.17  Aligned_cols=178  Identities=13%  Similarity=0.137  Sum_probs=138.0

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC---cEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG---HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ++|++ +.. +.....+. +|...|.+++|+|||++|++++.++   .|++||+.+++.. .+..|...+.+++|+|||+
T Consensus       159 ~~i~i~d~~-g~~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             EEEEEEETT-SCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred             ceEEEEcCC-CCCCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCC
Confidence            78999 765 45566776 8899999999999999999999885   9999999988765 5667888999999999999


Q ss_pred             EEE-EEeCCCc--EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIV-SIAKDGK--AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~-s~~~d~~--v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      +|+ +++.|+.  |++||+.+++. ..+..+.          ..+..++|+|||+.|++.+.     ......|++||+.
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~----------~~~~~~~~spdg~~l~~~s~-----~~g~~~i~~~d~~  299 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQI-RQVTDGR----------SNNTEPTWFPDSQNLAFTSD-----QAGRPQVYKVNIN  299 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCE-EECCCCS----------SCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETT
T ss_pred             EEEEEEecCCCceEEEEECCCCCE-EeCcCCC----------CcccceEECCCCCEEEEEEC-----CCCCcEEEEEECC
Confidence            888 6666654  99999988765 3444332          12334789999999888653     1112378889999


Q ss_pred             CCceEEEeccCCC-eEEEEEcCCCCEEEEEecCC---CeEEEEEeCCcee
Q psy3337         250 SGRLRLAREMKES-LSALAVRDDGRFVAVGTMFT---GSVFVYIAFSLQM  295 (297)
Q Consensus       250 ~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~d---g~i~vwd~~~~~~  295 (297)
                      +++... +..+.. +.+++|+|||++|++++. +   ..|++||+.+++.
T Consensus       300 ~~~~~~-l~~~~~~~~~~~~spdG~~l~~~~~-~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          300 GGAPQR-ITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             SSCCEE-CCCSSSEEEEEEECTTSSEEEEEEE-CSSCEEEEEEETTTCCE
T ss_pred             CCCEEE-EecCCCcccCeEECCCCCEEEEEEC-cCCceEEEEEECCCCCE
Confidence            877543 333444 899999999999998886 4   5899999988764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.7e-20  Score=156.68  Aligned_cols=192  Identities=16%  Similarity=0.209  Sum_probs=148.0

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCC----CCcEEEEEEecCCCEEEEEc------------CCCcEEEEeCCCCeeeE
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGS----ESLQRVVRLSRNGDLMVTGG------------TDGHLRLWSFPKMKPLL  153 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~------------~d~~i~iwd~~~~~~~~  153 (297)
                      .+...++.|.+ ++.+++.+..+..++    ...+..++|+|+|++|+++.            .++.|.+||+.+++.+.
T Consensus        50 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  129 (337)
T 1pby_B           50 ATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK  129 (337)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred             EEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence            35556788998 999998887776232    22566899999999988886            57999999999988877


Q ss_pred             EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC--------CCCce-------------------
Q psy3337         154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT--------PDNIK-------------------  206 (297)
Q Consensus       154 ~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~--------~~~~~-------------------  206 (297)
                      .+.. ...+.+++|+|++++|+++  ++.|++||+.+++.+..+..+.        |++..                   
T Consensus       130 ~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  206 (337)
T 1pby_B          130 AFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR  206 (337)
T ss_dssp             EEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred             EEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccc
Confidence            7764 4568899999999988887  6889999999888766554322        11100                   


Q ss_pred             ---------------EEEEe--------------eeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe
Q psy3337         207 ---------------YLFKR--------------CRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR  257 (297)
Q Consensus       207 ---------------~~~~~--------------~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  257 (297)
                                     ..+..              .....++|+|++++++++          ++.|.+||+.+++.+..+
T Consensus       207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----------~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA----------YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE----------ESEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe----------CCeEEEEECCCCcCccee
Confidence                           00000              012248899999988874          589999999999988888


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         258 EMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       258 ~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..+..+.+++|+|||++|++++. ++.|.+||+.+++.+
T Consensus       277 ~~~~~~~~~~~s~dg~~l~~~~~-~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          277 PLPHSYYSVNVSTDGSTVWLGGA-LGDLAAYDAETLEKK  314 (337)
T ss_dssp             ECSSCCCEEEECTTSCEEEEESB-SSEEEEEETTTCCEE
T ss_pred             cCCCceeeEEECCCCCEEEEEcC-CCcEEEEECcCCcEE
Confidence            77666899999999999999988 999999999988754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=3e-20  Score=156.52  Aligned_cols=191  Identities=15%  Similarity=0.054  Sum_probs=139.8

Q ss_pred             CCCCCCCceEEE-EeeCCCe-EEEEecCCCCcEEEEEEecCCCEEEEEcCCC---cEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDS-VQTVFAGSESLQRVVRLSRNGDLMVTGGTDG---HLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      ..+...++.|++ +..+++. ...+. .+..+..+++|+|+|++|+++..++   .|.+||+.+++.+..+..+ ....+
T Consensus        55 ~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~  132 (331)
T 3u4y_A           55 VVTSDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG  132 (331)
T ss_dssp             EEEESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred             EEEeCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence            334555778888 9999887 66665 5666655599999999999655553   8999999999888777644 45789


Q ss_pred             EEEccCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         165 VDFSISGEQIVSI-AKDGK-AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       165 ~~~sp~~~~l~s~-~~d~~-v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      ++|+|++++|+++ ..++. |.+|++.....+......      ..........++|+|+|++++.+.       ..++.
T Consensus       133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~spdg~~l~v~~-------~~~~~  199 (331)
T 3u4y_A          133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE------FISGGTRPFNITFTPDGNFAFVAN-------LIGNS  199 (331)
T ss_dssp             EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE------EECSSSSEEEEEECTTSSEEEEEE-------TTTTE
T ss_pred             eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc------cccCCCCccceEECCCCCEEEEEe-------CCCCe
Confidence            9999999866554 55688 999998754333222100      000001123578999999776653       34789


Q ss_pred             EEEEeCCCCce---EEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         243 VQQWDVDSGRL---RLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       243 i~~wd~~~~~~---~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |.+||+.+++.   +..+..+..+..++|+|||++|+++...++.|.+||+.+++.
T Consensus       200 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          200 IGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             EEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            99999999888   778877666899999999998776654378999999998875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=7.3e-20  Score=159.46  Aligned_cols=177  Identities=10%  Similarity=0.114  Sum_probs=136.7

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCc--EEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGH--LRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|++ ++.+++.. .+. .|...+.+++|+|||++|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|+|+
T Consensus       203 ~~i~~~d~~tg~~~-~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~  279 (415)
T 2hqs_A          203 SALVIQTLANGAVR-QVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ  279 (415)
T ss_dssp             CEEEEEETTTCCEE-EEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS
T ss_pred             cEEEEEECCCCcEE-Eee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC
Confidence            48999 88888775 455 7888999999999999887 6666654  99999988775 56777888999999999999


Q ss_pred             EEEEEeC-CC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         173 QIVSIAK-DG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      +|++++. ++  .|++||+.+++. ..+..+.    .      .+..++|+|+|++|++.+.     ...+..|++||+.
T Consensus       280 ~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~----~------~~~~~~~spdG~~l~~~~~-----~~g~~~i~~~d~~  343 (415)
T 2hqs_A          280 NLAFTSDQAGRPQVYKVNINGGAP-QRITWEG----S------QNQDADVSSDGKFMVMVSS-----NGGQQHIAKQDLA  343 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCC-EECCCSS----S------EEEEEEECTTSSEEEEEEE-----CSSCEEEEEEETT
T ss_pred             EEEEEECCCCCcEEEEEECCCCCE-EEEecCC----C------cccCeEECCCCCEEEEEEC-----cCCceEEEEEECC
Confidence            9988876 44  677889887754 3333222    1      1224789999999998654     1224689999999


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC---eEEEEEeCCce
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG---SVFVYIAFSLQ  294 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg---~i~vwd~~~~~  294 (297)
                      +++.. .+..+..+.+++|+|||++|++++. ++   .|++||+....
T Consensus       344 ~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~-~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          344 TGGVQ-VLSSTFLDETPSLAPNGTMVIYSSS-QGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             TCCEE-ECCCSSSCEEEEECTTSSEEEEEEE-ETTEEEEEEEETTSCC
T ss_pred             CCCEE-EecCCCCcCCeEEcCCCCEEEEEEc-CCCccEEEEEECCCCc
Confidence            88774 4444446999999999999998887 76   89999987543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.86  E-value=7.5e-20  Score=164.46  Aligned_cols=198  Identities=10%  Similarity=0.025  Sum_probs=152.8

Q ss_pred             cCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC--CCCeeeEEeccccCCeeEE
Q psy3337          89 LNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF--PKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~v~~~  165 (297)
                      +..+++.|++|.+ |..+++.+.++..++.  +.+++|+|||++|++++.|+.|.+||+  .+++.+..+. +...+..+
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~v  227 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSV  227 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceE
Confidence            3456788999999 9999999998874444  889999999999999999999999999  8888888887 45568999


Q ss_pred             EEcc----CCCEEEEEe-CCCcEEEEEcCCCceeeeeeccCCCCceEEEEe-eeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         166 DFSI----SGEQIVSIA-KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKR-CRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       166 ~~sp----~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      +|+|    +|++|++++ .+++|.+||..+++++..+..+........+.. .+...+.++|++..++..       ...
T Consensus       228 a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs-------~~~  300 (543)
T 1nir_A          228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN-------VKE  300 (543)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE-------ETT
T ss_pred             EeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE-------ECC
Confidence            9999    999999888 489999999999998888764321000000111 134457889987766553       345


Q ss_pred             CCeEEEEeCCCCceEE--EeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRLRL--AREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++.|.+||+.+.+.+.  .+.....+..+.|+|+|++|++++..+++|.+||+.+++++
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~  359 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  359 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence            8999999998865433  44443448899999999987766543899999999998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=2.3e-19  Score=152.14  Aligned_cols=193  Identities=13%  Similarity=0.074  Sum_probs=150.4

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCC--------cEEEEEEecCCCEEEEEc--CCCcEEEEeCCCCeeeEEeccc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSES--------LQRVVRLSRNGDLMVTGG--TDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~--------~v~~~~~s~~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                      ..+...++.|.+ +..+++.+..+..++..        .+.+++|+|+|+++++++  .++.|.+||+.+++.+..+..+
T Consensus       104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred             EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence            334556778988 99999988887722221        268999999999877665  4788999999999988888766


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ...+.+++|+|++++|++++.++.|.+||+.+++.+..+.........      ....++|+|++++++....       
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~-------  250 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH------FFINISLDTARQRAFITDS-------  250 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC------CEEEEEEETTTTEEEEEES-------
T ss_pred             CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc------ccceEEECCCCCEEEEEeC-------
Confidence            667899999999999999999999999999999887776542211001      1234779999998877543       


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .++.|.+||+.+++.+..+..... ..++|+|+|++++++...++.|.+||+.+++.+
T Consensus       251 ~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          251 KAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            468999999999998888776543 679999999977666632899999999988764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=5.4e-20  Score=155.68  Aligned_cols=244  Identities=11%  Similarity=0.103  Sum_probs=164.9

Q ss_pred             eeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCC
Q psy3337           5 VHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIE   84 (297)
Q Consensus         5 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
                      .+.+++..|++++.++.+.+|++...............       .                         ..... ...
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~-------------------------~~~~~-~s~   52 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-------G-------------------------PGTAM-MAP   52 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-------S-------------------------SCEEE-ECT
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCC-------C-------------------------CceeE-ECC
Confidence            36678888999999999999998653321100000000       0                         00000 001


Q ss_pred             CCCCcCCCCCCCceEEE-EeeCCCeEEEEecCC-----CCcEEEEEEecCCCEEEEEcCC------------CcEEEEeC
Q psy3337          85 DPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGS-----ESLQRVVRLSRNGDLMVTGGTD------------GHLRLWSF  146 (297)
Q Consensus        85 ~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h-----~~~v~~~~~s~~g~~l~s~~~d------------~~i~iwd~  146 (297)
                      +...+..+...++.|.+ ++.+++.+..+..++     ...+.+++|+|+|++|++++.+            +.|.+||+
T Consensus        53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence            11112334556788988 998888877765233     2336789999999999988865            89999999


Q ss_pred             CCCee---eEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCC-----------------ce
Q psy3337         147 PKMKP---LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDN-----------------IK  206 (297)
Q Consensus       147 ~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-----------------~~  206 (297)
                      .+++.   +..+. +...+.+++|+|+++ +++++.  .|.+||+.+++.+..+..+....                 ..
T Consensus       133 ~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (349)
T 1jmx_B          133 ADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH  208 (349)
T ss_dssp             GGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred             CCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence            87543   33443 334688999999999 555544  49999999988776664331000                 00


Q ss_pred             -------EEEE----------------------------------eeeeeeeeeCC-CCeEEEEeccCcccccCCCCeEE
Q psy3337         207 -------YLFK----------------------------------RCRYGLVEDSP-KRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       207 -------~~~~----------------------------------~~~~~~~~~s~-~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                             ..+.                                  ......++++| +++++++.          ++.|.
T Consensus       209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~----------~~~v~  278 (349)
T 1jmx_B          209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----------LNRLA  278 (349)
T ss_dssp             EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----------ESEEE
T ss_pred             eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE----------cCeEE
Confidence                   0000                                  00223567789 99988874          57999


Q ss_pred             EEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         245 QWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +||+.+++.+..+.....+.+++|+|+|++|++++. ++.|.+||+.+++.+
T Consensus       279 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          279 KYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT-FNDLAVFNPDTLEKV  329 (349)
T ss_dssp             EEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB-SSEEEEEETTTTEEE
T ss_pred             EEECccCeEEEEEcCCCCccceEECCCCCEEEEecC-CCeEEEEecccccee
Confidence            999999998888876666889999999999988888 999999999988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=6.8e-19  Score=148.46  Aligned_cols=188  Identities=12%  Similarity=0.163  Sum_probs=127.2

Q ss_pred             CCCCCCceEEE-Eee---CCCeEEEEecCCCCcEEEEEEecCCCEEEEEc-CCCcEEEEeCCC-CeeeE----Eecc-cc
Q psy3337          91 SIDSKEKNLRF-GFK---TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG-TDGHLRLWSFPK-MKPLL----HIEA-HS  159 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~---~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~-~~~~~----~~~~-~~  159 (297)
                      .++..++.|.+ ++.   +.+.+..+.  ....+.+++|+|+|++|++++ .++.|.+||+.+ ++...    .+.. ..
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  177 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG  177 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             EEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC
Confidence            34555788998 874   333444443  334578999999999888776 899999999987 54432    2222 33


Q ss_pred             CCeeEEEEccCCCEEEEEe-CCCcEEEEEcCC--Cce--eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         160 KEIDDVDFSISGEQIVSIA-KDGKAFVWNSKN--GSL--SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      ..+..++|+|++++|++++ .++.|.+||+..  +..  ...+... +....   .......++|+|++++|+...    
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~-~~~~~---~~~~~~~i~~s~dg~~l~v~~----  249 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM-PENFS---DTRWAADIHITPDGRHLYACD----  249 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS-CTTCC---SCCCEEEEEECTTSSEEEEEE----
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc-Ccccc---ccCCccceEECCCCCEEEEEe----
Confidence            4788999999999776554 789999999953  432  2222111 11000   001122478999999887643    


Q ss_pred             cccCCCCeEEEEeCC--C--CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         235 QNKRGISYVQQWDVD--S--GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~--~--~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                         ..++.|.+||+.  +  .+.+..+..+..+.+++|+|+|++|++++..++.|.+|++.
T Consensus       250 ---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          250 ---RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             ---TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ---cCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence               348999999998  2  34555555555589999999999988888428999999553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.84  E-value=2.1e-19  Score=161.60  Aligned_cols=245  Identities=15%  Similarity=0.084  Sum_probs=169.2

Q ss_pred             ceeeeCCCccEEEeccCCceeeEEE--eeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           3 CDVHSNGKNIYVVAGQENSNQLYKI--TAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         3 ~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++.|+++|++|++++.|+.+.+|++  .......  .. ..+      .+.   +.....+                   
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~--~i-~~g------~~p---~~va~sp-------------------  231 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA--EI-KIG------IEA---RSVESSK-------------------  231 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE--EE-ECC------SEE---EEEEECC-------------------
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE--EE-ecC------CCc---ceEEeCC-------------------
Confidence            4558999999999999999999999  3322110  00 000      000   0000000                   


Q ss_pred             CCCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEec-C--------C-CCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCC
Q psy3337          81 DKIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFA-G--------S-ESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPK  148 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~-~--------h-~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~  148 (297)
                      .+..+...+..+...+++|.+ |..+++.+..+.. +        | ...+.++.++|++. ++++...++.|.+||+.+
T Consensus       232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          232 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             CcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            000011222334445889999 9999999988862 1        2 23789999999764 567788899999999987


Q ss_pred             CeeeE--EeccccCCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeccC-CCC-ceEEEEeeeeeeeeeCCC-
Q psy3337         149 MKPLL--HIEAHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLSKELKWNT-PDN-IKYLFKRCRYGLVEDSPK-  222 (297)
Q Consensus       149 ~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~s~~-  222 (297)
                      .+.+.  .+ .+...+.++.|+|++++|++++ .+++|.+||+.+++++..+.... |.. ....        + ++|+ 
T Consensus       312 ~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--------~-~~p~~  381 (543)
T 1nir_A          312 IDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--------F-VHPKY  381 (543)
T ss_dssp             SSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE--------E-EETTT
T ss_pred             CCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc--------c-CCCCC
Confidence            66443  44 3566788999999999877654 58999999999999888776421 110 0111        1 3677 


Q ss_pred             CeEEEEeccCcccccCCCCeEEEEeCCC-------CceEEEeccCCC-eEEEEEcCCCCEEEEEe-------cCCCeEEE
Q psy3337         223 RSRLFTLANPLAQNKRGISYVQQWDVDS-------GRLRLAREMKES-LSALAVRDDGRFVAVGT-------MFTGSVFV  287 (297)
Q Consensus       223 ~~~l~~~~~~~~~~g~~d~~i~~wd~~~-------~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~-------~~dg~i~v  287 (297)
                      +..+++..       ..+++|.+||+.+       ++++..+..+.. +..++++|||++|++++       . +++|.|
T Consensus       382 g~~~~s~~-------~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~-~~~v~v  453 (543)
T 1nir_A          382 GPVWSTSH-------LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI-SQSVAV  453 (543)
T ss_dssp             EEEEEEEB-------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH-HTCEEE
T ss_pred             ccEEEecc-------CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc-CceEEE
Confidence            44444422       2478999999998       899999998865 88999999999999987       4 679999


Q ss_pred             EEeCCceec
Q psy3337         288 YIAFSLQMC  296 (297)
Q Consensus       288 wd~~~~~~~  296 (297)
                      ||+.+++.+
T Consensus       454 ~d~~~~~~~  462 (543)
T 1nir_A          454 FDLKNLDAK  462 (543)
T ss_dssp             EETTCTTSC
T ss_pred             EECCCCCCC
Confidence            999988754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=3.8e-18  Score=143.57  Aligned_cols=186  Identities=11%  Similarity=0.109  Sum_probs=141.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC-CCcEEEEeCCCCee-eEEeccccCCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT-DGHLRLWSFPKMKP-LLHIEAHSKEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~  166 (297)
                      ..+.+.++.|.+ +..+++.+..+. .+...+ .++|+|+|+++++++. ++.|.+||+.+++. ...+..+..+..+++
T Consensus        13 ~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVD   90 (331)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEE
T ss_pred             EEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceE
Confidence            446677889999 999999888877 556666 9999999986665554 88999999998887 777776666666699


Q ss_pred             EccCCCEEEEEeCCC---cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe-
Q psy3337         167 FSISGEQIVSIAKDG---KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY-  242 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~---~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~-  242 (297)
                      |+|++++|+++..++   .|.+||+.+++.+..+..+.           ....++|+|+|++++++..       .++. 
T Consensus        91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----------~~~~~~~spdg~~l~~~~~-------~~~~~  152 (331)
T 3u4y_A           91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-----------DAVGIAISPNGNGLILIDR-------SSANT  152 (331)
T ss_dssp             ECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-----------TEEEEEECTTSSCEEEEEE-------TTTTE
T ss_pred             ECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-----------CccceEECCCCCEEEEEec-------CCCce
Confidence            999999999555553   89999999988877665432           1134789999997777543       3567 


Q ss_pred             EEEEeCCCCceE-----EEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         243 VQQWDVDSGRLR-----LAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       243 i~~wd~~~~~~~-----~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |.+|++.....+     ..+.....+..++|+|||++|++++..++.|.+||+.+++.
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            999998763322     22333344899999999997766553389999999988775

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=1.1e-17  Score=141.86  Aligned_cols=167  Identities=15%  Similarity=0.159  Sum_probs=137.1

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc----ccCCeeEEEEc
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA----HSKEIDDVDFS  168 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s  168 (297)
                      ..++.|.+ +..+++.+..+. .+...+.+++|+|+|++|++++.++.|.+||+.+++.+..+..    +...+.+++|+
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  239 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLD  239 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE
T ss_pred             CCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC
Confidence            35778888 999988887775 4566678999999999999999999999999999988777654    45568899999


Q ss_pred             cCCCEEEEEeC-CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 ISGEQIVSIAK-DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p~~~~l~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      |+++++++++. ++.|.+||+.+++.+..+....+.            .++|+|++++++...       ..++.|.+||
T Consensus       240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------~~~~s~dg~~l~v~~-------~~~~~v~~~d  300 (353)
T 3vgz_A          240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESL------------AVLFNPARNEAYVTH-------RQAGKVSVID  300 (353)
T ss_dssp             TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC------------CEEEETTTTEEEEEE-------TTTTEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCc------------eEEECCCCCEEEEEE-------CCCCeEEEEE
Confidence            99997776665 599999999999888777654321            267899999777643       3479999999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEec
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  280 (297)
                      +.+++.+..+.....+.+++|+|||++|+++..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          301 AKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             TTTTEEEEEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEc
Confidence            999999988887777999999999998877766

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=4.7e-17  Score=138.00  Aligned_cols=194  Identities=14%  Similarity=0.092  Sum_probs=126.9

Q ss_pred             CCCCCCceEEE-Eee-CCCe--EEEEec-C-------CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC-CCeee--EEe
Q psy3337          91 SIDSKEKNLRF-GFK-TFDS--VQTVFA-G-------SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP-KMKPL--LHI  155 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~-~~~~--~~~~~~-~-------h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~-~~~~~--~~~  155 (297)
                      .+...++++.+ ++. ++..  +..+.. +       +...+.+++|+|+|+++++...++.|.+|++. +++..  ..+
T Consensus       102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~  181 (347)
T 3hfq_A          102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL  181 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence            34446788888 774 3332  223321 1       12348899999999977777788999999998 55432  222


Q ss_pred             ccc-cCCeeEEEEccCCCEEEE-EeCCCcEEEEEcCC--Ccee--eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         156 EAH-SKEIDDVDFSISGEQIVS-IAKDGKAFVWNSKN--GSLS--KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       156 ~~~-~~~v~~~~~sp~~~~l~s-~~~d~~v~lwd~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      ..+ ...+..++|+|+|++|++ ...++.|.+|++..  ++..  ..+... +....   .......++|+|+|++|++.
T Consensus       182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-~~~~~---~~~~~~~i~~spdG~~l~v~  257 (347)
T 3hfq_A          182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI-PADYT---AHNGAAAIRLSHDGHFLYVS  257 (347)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS-CTTCC---SCCEEEEEEECTTSCEEEEE
T ss_pred             EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec-CCCCC---CCCcceeEEECCCCCEEEEE
Confidence            222 336788999999996665 45688999999874  4432  222211 11000   00123358899999988664


Q ss_pred             ccCcccccCCCCeEEEEeCCC-C--ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE--eCCcee
Q psy3337         230 ANPLAQNKRGISYVQQWDVDS-G--RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI--AFSLQM  295 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~-~--~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd--~~~~~~  295 (297)
                      .       ..++.|.+|++.. +  +.+..+..+.. +..++|+|||++|++++..++.|.+|+  ..+++.
T Consensus       258 ~-------~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          258 N-------RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             E-------ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             e-------CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            3       2478999999973 2  45555555444 899999999999988886258999994  455654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.80  E-value=1.6e-18  Score=161.61  Aligned_cols=180  Identities=13%  Similarity=0.040  Sum_probs=133.3

Q ss_pred             ceEEE-EeeCCC--eEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC------------
Q psy3337          97 KNLRF-GFKTFD--SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE------------  161 (297)
Q Consensus        97 ~~i~~-~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------  161 (297)
                      +.|++ ++.++.  ....+. .|...+..++|||||++|++++ ++.|++||+.+++.......+...            
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~  206 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADE  206 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHH
T ss_pred             CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeee
Confidence            78888 888772  344555 7888899999999999999887 468999999988766554444332            


Q ss_pred             ----eeEEEEccCCCEEEEEeCCC---------------------------------cEEEEEcCC-CceeeeeeccCCC
Q psy3337         162 ----IDDVDFSISGEQIVSIAKDG---------------------------------KAFVWNSKN-GSLSKELKWNTPD  203 (297)
Q Consensus       162 ----v~~~~~sp~~~~l~s~~~d~---------------------------------~v~lwd~~~-~~~~~~~~~~~~~  203 (297)
                          +.+++|+|||++|++++.|+                                 .|++||+.+ ++......... .
T Consensus       207 ~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-~  285 (741)
T 2ecf_A          207 EMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKE-Q  285 (741)
T ss_dssp             HSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSC-S
T ss_pred             ccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCC-c
Confidence                47899999999999987765                                 788899987 76543322100 0


Q ss_pred             CceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC-----CeEEEEEcCCCCEEEEE
Q psy3337         204 NIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE-----SLSALAVRDDGRFVAVG  278 (297)
Q Consensus       204 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~-----~v~~~~~s~dg~~l~~~  278 (297)
                             ...+..++| |||+.|++....   .+..+..|++||+.+++....+..+.     .+.+++|+|||++++++
T Consensus       286 -------~~~~~~~~~-pDg~~l~~~~~~---~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~  354 (741)
T 2ecf_A          286 -------DIYLARVNW-RDPQHLSFQRQS---RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSS  354 (741)
T ss_dssp             -------SEEEEEEEE-EETTEEEEEEEE---TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred             -------ceEEEEEEe-CCCCEEEEEEec---ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence                   112345889 999998876420   13456789999999998877765543     24689999999988888


Q ss_pred             ecCCCeEEEEEeC
Q psy3337         279 TMFTGSVFVYIAF  291 (297)
Q Consensus       279 ~~~dg~i~vwd~~  291 (297)
                      .. ||.++||.+.
T Consensus       355 ~~-~g~~~l~~~~  366 (741)
T 2ecf_A          355 ER-TGFQHLYRID  366 (741)
T ss_dssp             CT-TSSCEEEEEC
T ss_pred             cC-CCccEEEEEc
Confidence            88 9988888764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=3.9e-17  Score=139.31  Aligned_cols=192  Identities=12%  Similarity=0.135  Sum_probs=125.5

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEE----e-cC--------CCCcEEEEEEecCCCEEEE-EcCCCcEEEEeCCCCee---
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTV----F-AG--------SESLQRVVRLSRNGDLMVT-GGTDGHLRLWSFPKMKP---  151 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~----~-~~--------h~~~v~~~~~s~~g~~l~s-~~~d~~i~iwd~~~~~~---  151 (297)
                      ..+...++++.+ ++.....+..+    . .+        +...+.+++|+|+|++|++ +..++.|.+|++.....   
T Consensus       113 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~  192 (361)
T 3scy_A          113 VTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADN  192 (361)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTT
T ss_pred             EEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc
Confidence            334456778888 76543322111    1 01        2334688999999986655 44588999998864331   


Q ss_pred             ---e-------EEeccccCCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCcee--eeeeccCCCCceEEEEeeeeeeee
Q psy3337         152 ---L-------LHIEAHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLS--KELKWNTPDNIKYLFKRCRYGLVE  218 (297)
Q Consensus       152 ---~-------~~~~~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  218 (297)
                         +       .....+...+..++|+|+++++++++ .++.|.+||+.++...  ..+....... .      ....++
T Consensus       193 ~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~-~------~~~~i~  265 (361)
T 3scy_A          193 KEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA-Q------GSGDIH  265 (361)
T ss_dssp             CCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC-C------CEEEEE
T ss_pred             ccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC-C------CcccEE
Confidence               1       11223445678999999999887777 6899999999876542  2222111100 0      113588


Q ss_pred             eCCCCeEEEEeccCcccccCC-CCeEEEEeCC--CCc--eEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe--C
Q psy3337         219 DSPKRSRLFTLANPLAQNKRG-ISYVQQWDVD--SGR--LRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA--F  291 (297)
Q Consensus       219 ~s~~~~~l~~~~~~~~~~g~~-d~~i~~wd~~--~~~--~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~--~  291 (297)
                      |+|||++|++...       . ++.|.+|++.  +++  .+..+.....+..++|+|||++|++++..++.|.+|++  .
T Consensus       266 ~spdg~~l~v~~~-------~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          266 LSPDGKYLYASNR-------LKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             ECTTSSEEEEEEC-------SSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEECC-------CCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence            9999999987543       3 4789999986  344  44445443348899999999999988843789999654  4


Q ss_pred             Ccee
Q psy3337         292 SLQM  295 (297)
Q Consensus       292 ~~~~  295 (297)
                      +++.
T Consensus       339 ~g~~  342 (361)
T 3scy_A          339 TGLL  342 (361)
T ss_dssp             TCCE
T ss_pred             CCcE
Confidence            5553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=2.8e-19  Score=156.50  Aligned_cols=155  Identities=15%  Similarity=0.151  Sum_probs=118.3

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCC----------eeeEE-----eccccCCeeEEEEccCCCEEE----EE
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM----------KPLLH-----IEAHSKEIDDVDFSISGEQIV----SI  177 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~sp~~~~l~----s~  177 (297)
                      ...+..+++++++.++++++.++ +++|+....          ..+..     ...+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578999999999999999888 888874210          01111     113566799999999999999    78


Q ss_pred             eCCCcEEEEEcCCC--------ce---eeeeeccCCCCceEEEEeeeeeeeeeCCC-CeEEEEeccCcccccCCCCeEEE
Q psy3337         178 AKDGKAFVWNSKNG--------SL---SKELKWNTPDNIKYLFKRCRYGLVEDSPK-RSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       178 ~~d~~v~lwd~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +.|+.|++||+.++        +.   +..+..|.          ..+..++|+|+ +.+|++++        .|+.|++
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~----------~~V~~v~~~p~~~~~las~s--------~Dg~v~i  176 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG----------GMVIDMKWNPTVPSMVAVCL--------ADGSIAV  176 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG----------GSEEEEEECSSCTTEEEEEE--------TTSCEEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCC----------CceEEEEECCCCCCEEEEEE--------CCCeEEE
Confidence            88999999998654        12   22222232          23456889998 77888854        4999999


Q ss_pred             EeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         246 WDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      ||++++..+.....|.. |.+++|+|+|++|++|+. ||.|++||++
T Consensus       177 wD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~-dg~v~iwd~~  222 (434)
T 2oit_A          177 LQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPT  222 (434)
T ss_dssp             EEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET-TSCEEEECTT
T ss_pred             EEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC-CCcEEEEccC
Confidence            99999876665555554 999999999999999999 9999999987

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=2.1e-17  Score=135.97  Aligned_cols=177  Identities=16%  Similarity=0.128  Sum_probs=129.1

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-CeeeEEeccc-cCCeeEEEEc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-MKPLLHIEAH-SKEIDDVDFS  168 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~s  168 (297)
                      .++.|++|++ ++.+++.. .+. .|...|.+++|+|+|++|++++ ++.|++||+.+ ++....+..+ ...+.+++|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~-~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVW-QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEE-EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCcee-eec-cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            4667899999 88887765 444 6888999999999999999986 78999999998 8777666555 3678999999


Q ss_pred             cCCCEEEEEe--CCCcEEEEE--cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         169 ISGEQIVSIA--KDGKAFVWN--SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       169 p~~~~l~s~~--~d~~v~lwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      |++++|++++  .++...||.  +.++. ...+..+.    .       ...++|+|+++.|+...       ..++.+.
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~----~-------~~~~~~spdg~~l~~~~-------~~~~~~~  154 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL----P-------SYWHGWSPDGKSFTYCG-------IRDQVFD  154 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS----S-------EEEEEECTTSSEEEEEE-------EETTEEE
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC----C-------ccceEECCCCCEEEEEE-------CCCCceE
Confidence            9999999998  334555554  44443 33333222    1       22367999999887432       2378888


Q ss_pred             EEeC--CCCceEEEeccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         245 QWDV--DSGRLRLAREMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       245 ~wd~--~~~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      +|++  .+++. ..+..+. .+.+++|+|+|++|++++..++.+.+|++.
T Consensus       155 l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          155 IYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             EEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            8885  44444 4444444 499999999999887666328899999875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.78  E-value=6.3e-19  Score=163.74  Aligned_cols=184  Identities=13%  Similarity=0.059  Sum_probs=129.6

Q ss_pred             CCceEEE-EeeCCCeEEEEe--cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCe---------
Q psy3337          95 KEKNLRF-GFKTFDSVQTVF--AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI---------  162 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v---------  162 (297)
                      .++.+++ ++.+++. ..+.  .+|...+..++|||||++|++++. +.|++||+.+++.......+...+         
T Consensus        89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (723)
T ss_dssp             CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence            3578889 8888876 3333  245556889999999999999876 789999999887766555444333         


Q ss_pred             ---------eEEEEccCCCEEEEEeCCC----------------------------------cEEEEEcCCCceeeeeec
Q psy3337         163 ---------DDVDFSISGEQIVSIAKDG----------------------------------KAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       163 ---------~~~~~sp~~~~l~s~~~d~----------------------------------~v~lwd~~~~~~~~~~~~  199 (297)
                               .+++|+|||++|++++.|+                                  .|++||+.+++....+..
T Consensus       167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~  246 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP  246 (723)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred             EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC
Confidence                     7899999999999887543                                  788999988775555543


Q ss_pred             cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CC-e----EEEEEcCCCC
Q psy3337         200 NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ES-L----SALAVRDDGR  273 (297)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~-v----~~~~~s~dg~  273 (297)
                      +....    .....+..++|+|||+.+++...    .+..+..|++||+.++++...+..+ .. +    ..++|+|||+
T Consensus       247 ~~~~~----~~~~~~~~~~~SpDg~~l~~~~~----~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          247 PDDPR----MREYYITMVKWATSTKVAVTWLN----RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             CCCGG----GSSEEEEEEEESSSSEEEEEEEE----TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             CccCC----CccceeEEEEEeCCCeEEEEEEc----CCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence            21000    00112345889999998876543    1345678999999998877665432 22 3    3889999999


Q ss_pred             EEEEE--ecCCC------eEEEEE
Q psy3337         274 FVAVG--TMFTG------SVFVYI  289 (297)
Q Consensus       274 ~l~~~--~~~dg------~i~vwd  289 (297)
                      .|+..  .. ++      .|++||
T Consensus       319 ~l~~~~~~~-~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          319 KFFFIRAIP-QGGRGKFYHITVSS  341 (723)
T ss_dssp             SEEEEEEEC-CSSSSCEEEEEEEC
T ss_pred             eEEEEEecc-cCCCcceeEEEEEe
Confidence            77754  44 77      577777

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=1.7e-17  Score=136.48  Aligned_cols=166  Identities=14%  Similarity=0.109  Sum_probs=117.7

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCC-CCeeeEEeccccCCeeEEEEccCCCEE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFP-KMKPLLHIEAHSKEIDDVDFSISGEQI  174 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l  174 (297)
                      .|.. +..++. ...+. .+ ..+..++|+|++++|+ ++..++.+.||++. .......+..|...+.+++|+|++++|
T Consensus       111 ~l~~~~~~~~~-~~~~~-~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          111 AIYLLPSTGGT-PRLMT-KN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             EEEEEETTCCC-CEECC-SS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred             eEEEEECCCCc-eEEee-cC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence            4444 445544 33443 33 3488999999999877 78889999999863 223445677788899999999999988


Q ss_pred             EEEe-CCCcEEEEEcC-CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC-------CCCeEEE
Q psy3337         175 VSIA-KDGKAFVWNSK-NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR-------GISYVQQ  245 (297)
Q Consensus       175 ~s~~-~d~~v~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~-------~d~~i~~  245 (297)
                      +.++ .++.+.+|++. .+..+..+..+.          ..+..+.|+|++++|++.+..    +.       .+..|++
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~s~dg~~l~~~~~~----~~~~~~~~~~~~~l~~  253 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITDSA----------YGDWFPHPSPSGDKVVFVSYD----ADVFDHPRDLDVRVQL  253 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCCCS----------EEEEEEEECTTSSEEEEEEEE----TTCCSCCSSEEEEEEE
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEecCC----------cccCCeEECCCCCEEEEEEcC----CCCCcccccCceEEEE
Confidence            8766 58999999886 445555554332          123347899999999886540    00       1267999


Q ss_pred             EeCCCCceEE--EeccCCC-eEEEEEcCCCCEEEEEec
Q psy3337         246 WDVDSGRLRL--AREMKES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       246 wd~~~~~~~~--~~~~~~~-v~~~~~s~dg~~l~~~~~  280 (297)
                      ||+.+++...  .+..+.. +.+++|+|+|++|++++.
T Consensus       254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             EecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            9999876543  3335544 899999999999988876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.78  E-value=3.4e-18  Score=158.85  Aligned_cols=196  Identities=11%  Similarity=0.036  Sum_probs=141.6

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCC---cEEEEEEecCCCEEEEEcCC---------CcEEEEeCCCCeeeEEe---cc
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSES---LQRVVRLSRNGDLMVTGGTD---------GHLRLWSFPKMKPLLHI---EA  157 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~s~~~d---------~~i~iwd~~~~~~~~~~---~~  157 (297)
                      +.|++|++ +..+++....+. +|..   .|.+++|||||++|++++.+         +.|++||+.+++. ..+   ..
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~  111 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV  111 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC
T ss_pred             eCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcc
Confidence            57889999 999998877775 6654   48999999999999998764         7788999998875 333   34


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEe-----------eeeeeeeeCCCCeEE
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKR-----------CRYGLVEDSPKRSRL  226 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~l  226 (297)
                      |...+..++|||||+.|+.++. +.|++||+.+++.......+...   ..+..           ..+..++|+|||+.|
T Consensus       112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~---~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l  187 (723)
T 1xfd_A          112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG---VIYNGLSDWLYEEEILKTHIAHWWSPDGTRL  187 (723)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT---TEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred             ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC---ceECcccceeEEEEeccCcceEEECCCCCEE
Confidence            4555899999999999999876 79999999888765544332211   11100           012458899999999


Q ss_pred             EEeccCc------------------------cccc--CCCCeEEEEeCCCCceEEEeccC------CC-eEEEEEcCCCC
Q psy3337         227 FTLANPL------------------------AQNK--RGISYVQQWDVDSGRLRLAREMK------ES-LSALAVRDDGR  273 (297)
Q Consensus       227 ~~~~~~~------------------------~~~g--~~d~~i~~wd~~~~~~~~~~~~~------~~-v~~~~~s~dg~  273 (297)
                      ++.....                        ...|  ..+..|++||+.+++....+..+      .. +.+++|||||+
T Consensus       188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~  267 (723)
T 1xfd_A          188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK  267 (723)
T ss_dssp             EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred             EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence            8876410                        0001  11238999999988765555543      33 89999999999


Q ss_pred             EEEEEecC---CCeEEEEEeCCcee
Q psy3337         274 FVAVGTMF---TGSVFVYIAFSLQM  295 (297)
Q Consensus       274 ~l~~~~~~---dg~i~vwd~~~~~~  295 (297)
                      +|++....   +..|++||+.+++.
T Consensus       268 ~l~~~~~~~~~~~~i~~~d~~~g~~  292 (723)
T 1xfd_A          268 VAVTWLNRAQNVSILTLCDATTGVC  292 (723)
T ss_dssp             EEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             EEEEEEcCCCCeEEEEEEeCCCCcc
Confidence            98776530   36799999988764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=1.4e-17  Score=151.15  Aligned_cols=151  Identities=18%  Similarity=0.175  Sum_probs=112.0

Q ss_pred             EEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC----CcEEEEEcCCCcee
Q psy3337         120 QRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD----GKAFVWNSKNGSLS  194 (297)
Q Consensus       120 v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d----~~v~lwd~~~~~~~  194 (297)
                      +...+|+|+|+. +++.+.++.+.+||+.+++...... +..  .+++|+|||++|++++.+    ..|++||+.+++..
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            446789998853 3333444455699998887654443 333  899999999999988776    78999999887654


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC--eEEEEeCCCCceEEEeccCCC-eEEEE----
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS--YVQQWDVDSGRLRLAREMKES-LSALA----  267 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~-v~~~~----  267 (297)
                       .+..+.    .      .+..++|+|||+.|++..        .++  .|++||+.+++.. .+..+.. +..++    
T Consensus       189 -~l~~~~----~------~~~~~~~SpDG~~l~~~~--------~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          189 -VFDSGE----G------SFSSASISPGMKVTAGLE--------TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             -EECCSS----C------EEEEEEECTTSCEEEEEE--------CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             -EeecCC----C------ccccceECCCCCEEEEcc--------CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence             444332    1      123478999999999533        366  8999999998887 6666654 66666    


Q ss_pred             ----EcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         268 ----VRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       268 ----~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                          |+|||.++++++. ++.+++|++  ++.+
T Consensus       249 ~~~~~spdg~~~~~~~~-~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARR-EGRSAVFID--GERV  278 (582)
T ss_dssp             EEEEECTTSCEEEEEEE-TTEEEEEET--TEEE
T ss_pred             cceeEcCCCcEEEEEEc-CCcEEEEEE--CCee
Confidence                9999988899999 999999998  5543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.77  E-value=3.3e-17  Score=138.08  Aligned_cols=183  Identities=9%  Similarity=0.048  Sum_probs=129.5

Q ss_pred             CCCCCCCceEEE-Eee-CCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC-CcEEEEeCC--CCe--eeEEeccccCCe
Q psy3337          90 NSIDSKEKNLRF-GFK-TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD-GHLRLWSFP--KMK--PLLHIEAHSKEI  162 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-~~i~iwd~~--~~~--~~~~~~~~~~~v  162 (297)
                      ..+++.|+.|++ ++. +++........|...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~   86 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL   86 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence            334567889999 774 3432211112577778899999999988888876 899999987  444  344555444 78


Q ss_pred             eEEEEccCCCEEEEEeC-CCcEEEEEcCCC---ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         163 DDVDFSISGEQIVSIAK-DGKAFVWNSKNG---SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~-d~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ..++|+|++++|++++. ++.|.+||+..+   ..+..+..+.           ....++|+|++++++++..       
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~s~dg~~l~~~~~-------  148 (343)
T 1ri6_A           87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-----------GCHSANISPDNRTLWVPAL-------  148 (343)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-----------TBCCCEECTTSSEEEEEEG-------
T ss_pred             cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-----------CceEEEECCCCCEEEEecC-------
Confidence            99999999998877665 889999999433   3333332221           1234779999998887641       


Q ss_pred             CCCeEEEEeCCC-CceEE----Eecc--CCCeEEEEEcCCCCEEEEEe-cCCCeEEEEEeCC
Q psy3337         239 GISYVQQWDVDS-GRLRL----AREM--KESLSALAVRDDGRFVAVGT-MFTGSVFVYIAFS  292 (297)
Q Consensus       239 ~d~~i~~wd~~~-~~~~~----~~~~--~~~v~~~~~s~dg~~l~~~~-~~dg~i~vwd~~~  292 (297)
                      .++.|.+||+.+ ++...    .+..  ...+..++|+|+|++|++++ . ++.|.+|++..
T Consensus       149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-~~~i~~~~~~~  209 (343)
T 1ri6_A          149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWELKD  209 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEESSC
T ss_pred             CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-CCEEEEEEecC
Confidence            378999999987 65432    2222  23488999999999876665 6 89999999953

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=4.9e-17  Score=150.73  Aligned_cols=186  Identities=10%  Similarity=0.094  Sum_probs=132.1

Q ss_pred             CCceEEE-EeeC-----CCeEEEEecCCCCc--------------EEEEEEecCCCEEEEEc------------------
Q psy3337          95 KEKNLRF-GFKT-----FDSVQTVFAGSESL--------------QRVVRLSRNGDLMVTGG------------------  136 (297)
Q Consensus        95 ~d~~i~~-~~~~-----~~~~~~~~~~h~~~--------------v~~~~~s~~g~~l~s~~------------------  136 (297)
                      .|+.|++ ++.+     ++...... .+...              +.++.|||||++|++++                  
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred             ECCeEEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence            5688999 8888     77665544 33332              47899999999999987                  


Q ss_pred             ---------------CCCcEEEEeCCCCeeeEEec--cccCCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCcee
Q psy3337         137 ---------------TDGHLRLWSFPKMKPLLHIE--AHSKEIDDVDFSISGEQIVSIAKDG-----KAFVWNSKNGSLS  194 (297)
Q Consensus       137 ---------------~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~d~-----~v~lwd~~~~~~~  194 (297)
                                     .+..|++||+.+++......  .|...+.+++|+|||+.|++++.++     .|++||+.+++..
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~  297 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV  297 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence                           44679999999887654432  4667899999999999999887765     8999999988444


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCC--CCeEEEEeccCcccccCCCCeEEEEeCC-CCceEEEeccCCC-eEE-EEEc
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSP--KRSRLFTLANPLAQNKRGISYVQQWDVD-SGRLRLAREMKES-LSA-LAVR  269 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~~~g~~d~~i~~wd~~-~~~~~~~~~~~~~-v~~-~~~s  269 (297)
                      ..+......  ...   .....+.|+|  +|+++++..        .++.+++|++. ++..+..+..+.. +.. ++|+
T Consensus       298 ~~~~~~~~~--~~~---~~~~~~~~sp~~dg~~l~~~~--------~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~s  364 (706)
T 2z3z_A          298 RTLFVETDK--HYV---EPLHPLTFLPGSNNQFIWQSR--------RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFD  364 (706)
T ss_dssp             EEEEEEECS--SCC---CCCSCCEECTTCSSEEEEEEC--------TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEEC
T ss_pred             eEEEEccCC--CeE---CccCCceeecCCCCEEEEEEc--------cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEc
Confidence            333211100  000   0113467999  999887744        47888888776 5667777766655 766 8999


Q ss_pred             CCCCEEEEEecCCC----eEEEEEeCCce
Q psy3337         270 DDGRFVAVGTMFTG----SVFVYIAFSLQ  294 (297)
Q Consensus       270 ~dg~~l~~~~~~dg----~i~vwd~~~~~  294 (297)
                      |||+.|+.++..++    .|+.||+.+++
T Consensus       365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          365 PKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             TTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             CCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            99998876665244    67777876654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.75  E-value=1.1e-16  Score=148.34  Aligned_cols=184  Identities=11%  Similarity=0.090  Sum_probs=131.4

Q ss_pred             CCceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCCC-----cEEEEeCCCCeeeEEec-c-ccC---Ce
Q psy3337          95 KEKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTDG-----HLRLWSFPKMKPLLHIE-A-HSK---EI  162 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~-~~~---~v  162 (297)
                      .+..|++ ++.+++...... ..|...+.+++|+|||++|++++.++     .|++||+.+++....+. . +..   .+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            4567888 888877554443 25777899999999999999887775     89999999884333332 2 222   24


Q ss_pred             eEEEEcc--CCCEEEEEeCCCcEEEEEcC-CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         163 DDVDFSI--SGEQIVSIAKDGKAFVWNSK-NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       163 ~~~~~sp--~~~~l~s~~~d~~v~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      .++.|+|  +|+++++++.|+.++||++. ++..+..+..+...    .     ...++|+|+++.|+..+.     ...
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~----v-----~~~~~~spdg~~l~~~~~-----~~~  378 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE----V-----TNFAGFDPKGTRLYFEST-----EAS  378 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC----E-----EEEEEECTTSSEEEEEES-----SSC
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeE----E-----EeeeEEcCCCCEEEEEec-----CCC
Confidence            6789999  99999999999999999876 56666666443211    1     112678999998877654     111


Q ss_pred             --CCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC----CeEEEEEeCCce
Q psy3337         240 --ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT----GSVFVYIAFSLQ  294 (297)
Q Consensus       240 --d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d----g~i~vwd~~~~~  294 (297)
                        ...|+.||+.+++ ...+.....+.+++|+|||++|+.... +    +.|++||+.+++
T Consensus       379 ~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~-~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          379 PLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQ-SPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEE-CSSCSCEEEEEESSSCE
T ss_pred             CceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEec-CCCCCcEEEEEECCCCe
Confidence              2378888888776 344444445999999999999887654 3    569999998775

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.75  E-value=1.7e-16  Score=133.29  Aligned_cols=192  Identities=10%  Similarity=0.074  Sum_probs=130.7

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCC-cEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEecc-c----cCCe
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSES-LQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEA-H----SKEI  162 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~-~----~~~v  162 (297)
                      .+++.+++|++ |..+++.+..+..++.. .+..++|+|+|+++ +++..++.|.+||+.+++.+..+.. +    ...+
T Consensus         5 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~   84 (337)
T 1pby_B            5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL   84 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence            35667889999 99999888877633322 36789999999765 5666788999999999888776653 1    2267


Q ss_pred             eEEEEccCCCEEEEEe------------CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         163 DDVDFSISGEQIVSIA------------KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~------------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                      .+++|+|++++|+++.            .++.|.+||+.+++.+..+....           ....++|+|++++|++..
T Consensus        85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----------~~~~~~~s~dg~~l~~~~  153 (337)
T 1pby_B           85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----------QITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----------SCCCEEECTTSSCEEEES
T ss_pred             cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-----------CcceeEECCCCCEEEEeC
Confidence            8999999999998886            57999999999887776664321           112355677777666542


Q ss_pred             cC--------------------------------cccccCCCC-----------------------eEEEEeCCCCceEE
Q psy3337         231 NP--------------------------------LAQNKRGIS-----------------------YVQQWDVDSGRLRL  255 (297)
Q Consensus       231 ~~--------------------------------~~~~g~~d~-----------------------~i~~wd~~~~~~~~  255 (297)
                      ..                                +.+.+..++                       .|.+||+.+++...
T Consensus       154 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  233 (337)
T 1pby_B          154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence            10                                000000011                       24555555554431


Q ss_pred             -EeccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         256 -AREMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       256 -~~~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       .+..+. .+.+++|+|||++|+++   ++.|.+||+.+++.+
T Consensus       234 ~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~  273 (337)
T 1pby_B          234 REVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASI  273 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEE
T ss_pred             eecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCc
Confidence             111222 26789999999999887   579999999887754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=1.8e-15  Score=129.33  Aligned_cols=193  Identities=9%  Similarity=-0.014  Sum_probs=127.8

Q ss_pred             CCceEEE-Eee-CCCeEEEEe---cCCCCcEEEEEEecCCCEEEEEc-CCCcEEEEeCC-CCeee--EEec--cccCCee
Q psy3337          95 KEKNLRF-GFK-TFDSVQTVF---AGSESLQRVVRLSRNGDLMVTGG-TDGHLRLWSFP-KMKPL--LHIE--AHSKEID  163 (297)
Q Consensus        95 ~d~~i~~-~~~-~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~-~~~~~--~~~~--~~~~~v~  163 (297)
                      .++++.+ ++. .++....+.   ..+...+.+++|+|||++|+++. .++.|++||+. +++..  ..+.  .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            5778888 776 466544433   13556789999999999887765 46799999998 67642  3333  2456789


Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEEcC--CCceee---eeeccCCCCc-eEEE---Eeeeeeeee-eCCCCeEEEEeccC
Q psy3337         164 DVDFSISGEQIVSIAK-DGKAFVWNSK--NGSLSK---ELKWNTPDNI-KYLF---KRCRYGLVE-DSPKRSRLFTLANP  232 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~-d~~v~lwd~~--~~~~~~---~~~~~~~~~~-~~~~---~~~~~~~~~-~s~~~~~l~~~~~~  232 (297)
                      .++|+|+|++|++++. ++.|.+|++.  +++...   .+... |... ...-   .......++ |+|||++|++... 
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~-  274 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI-PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR-  274 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS-CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE-
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC-CCCcCCcccccccccccccEEEECCCCCEEEEECC-
Confidence            9999999999887764 7899999875  455421   22111 1100 0000   000133588 9999999887543 


Q ss_pred             cccccCC---CCeEEEEeCC-CCceEE---EeccCC-CeEEEEEcC---CCCEEEEEecCCCeEEEEEeCCc
Q psy3337         233 LAQNKRG---ISYVQQWDVD-SGRLRL---AREMKE-SLSALAVRD---DGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       233 ~~~~g~~---d~~i~~wd~~-~~~~~~---~~~~~~-~v~~~~~s~---dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                          +..   .+.|.+|++. +++...   ....+. .+..++|+|   ||++|++++..++.|.+|++...
T Consensus       275 ----~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          275 ----ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ----ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ----CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                211   1389999996 566543   233333 377899999   89999998862489999998654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=1.6e-16  Score=134.19  Aligned_cols=185  Identities=11%  Similarity=0.082  Sum_probs=134.5

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccc------cCC
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAH------SKE  161 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~  161 (297)
                      ..+++.+++|++ |..+++.+..+..+....+..++|+|+|+++ +++..++.|.+||+.+++.+..+..+      ...
T Consensus        14 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~   93 (349)
T 1jmx_B           14 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS   93 (349)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred             EEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc
Confidence            446677899999 9999988888762322246799999999865 56667899999999999887766532      233


Q ss_pred             eeEEEEccCCCEEEEEeCC------------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         162 IDDVDFSISGEQIVSIAKD------------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~~d------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      +..++|+|++++|++++.+            +.|.+||+.+++....+....        ....+..++|+|+++ +++.
T Consensus        94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~-l~~~  164 (349)
T 1jmx_B           94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYLMRAADDGS-LYVA  164 (349)
T ss_dssp             SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCCEEECTTSC-EEEE
T ss_pred             ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--------CCCcccceeECCCCc-EEEc
Confidence            7899999999999988865            899999998754433221100        001233477899999 6553


Q ss_pred             ccCcccccCCCCeEEEEeCCCCceEEEeccCC------------------------------------------------
Q psy3337         230 ANPLAQNKRGISYVQQWDVDSGRLRLAREMKE------------------------------------------------  261 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~------------------------------------------------  261 (297)
                                ++.|.+||+.+++.+..+..+.                                                
T Consensus       165 ----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          165 ----------GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             ----------SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             ----------cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence                      2349999999888776654331                                                


Q ss_pred             ---------------------CeEEEEEcC-CCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         262 ---------------------SLSALAVRD-DGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       262 ---------------------~v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                                           .+.+++|+| ||++|+++   ++.|.+||+.+++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~  288 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI  288 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE
Confidence                                 245677889 99999888   569999999988754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.74  E-value=3.9e-17  Score=152.18  Aligned_cols=146  Identities=13%  Similarity=0.094  Sum_probs=114.4

Q ss_pred             CCcEEEEEEecCCCEEEEEcC-CC-----cEEEEeCCCCeeeEEeccccC------------------------CeeEEE
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGT-DG-----HLRLWSFPKMKPLLHIEAHSK------------------------EIDDVD  166 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~~~  166 (297)
                      ...+.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            445889999999999999988 88     899999999887766655433                        378999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNGS--LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      |+|||++|++++. +.|++||+.++.  .+..+..+.          ..+..++|+|||++|+++.         ++.|+
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~----------~~~~~~~~SPDG~~la~~~---------~~~i~  175 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE----------GFATDAKLSPKGGFVSFIR---------GRNLW  175 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS----------SCEEEEEECTTSSEEEEEE---------TTEEE
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC----------cccccccCCCCCCEEEEEe---------CCcEE
Confidence            9999999999886 899999998872  333343332          1233478999999998865         45899


Q ss_pred             EEeCCCCceEEEeccCCC-----------------eEEEEEcCCCCEEEEEecCCC
Q psy3337         245 QWDVDSGRLRLAREMKES-----------------LSALAVRDDGRFVAVGTMFTG  283 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~-----------------v~~~~~s~dg~~l~~~~~~dg  283 (297)
                      +||+.+++.......+..                 +.+++|||||++|++++. |+
T Consensus       176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~  230 (741)
T 2ecf_A          176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DE  230 (741)
T ss_dssp             EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-EC
T ss_pred             EEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cC
Confidence            999998887765544432                 378999999999999887 65

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.73  E-value=5.5e-17  Score=156.73  Aligned_cols=175  Identities=13%  Similarity=0.159  Sum_probs=136.3

Q ss_pred             CCceEEE-EeeCCCeEEEEecC-----------CCCcEEEEEEe-cCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC-
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAG-----------SESLQRVVRLS-RNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK-  160 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~-----------h~~~v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-  160 (297)
                      .++.|++ +... ..+..+. +           |...+.+++|+ |||++|++++ ++.|++|++..++.. .+..|.. 
T Consensus       263 ~~~~i~~~d~~~-~~l~~l~-~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~  338 (1045)
T 1k32_A          263 KGGSIYIFNPDT-EKIEKIE-IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRI  338 (1045)
T ss_dssp             ETTEEEEECTTT-CCEEECC-CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCE
T ss_pred             eCCEEEEecCCc-eEeeeec-cCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcc
Confidence            3677887 6633 3344443 3           34468899999 9999999887 789999999877644 4666777 


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEE-EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAF-VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~-lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      .+..++|+ +++.|++++.+..+. +||+.+++.. .+..+.          ..+..++|+|||++|++...        
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~----------~~~~~~~~SpDG~~la~~~~--------  398 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL----------GNVFAMGVDRNGKFAVVAND--------  398 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC----------CSEEEEEECTTSSEEEEEET--------
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCc----------cceeeeEECCCCCEEEEECC--------
Confidence            89999999 999999998888888 8998776543 332321          12335789999999998655        


Q ss_pred             CCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCC----------eEEEEEeCCce
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTG----------SVFVYIAFSLQ  294 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg----------~i~vwd~~~~~  294 (297)
                      ++.|++||+.+++....+..+.. +.+++|||||++|++++. ++          .|++||+.+++
T Consensus       399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~-~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP-LKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE-ECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEec-CccccccCCCCCeEEEEECCCCc
Confidence            89999999999998888766655 899999999999988876 54          89999998876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.73  E-value=1.8e-16  Score=153.13  Aligned_cols=181  Identities=8%  Similarity=-0.049  Sum_probs=138.5

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCC-cEEEEEEecCCCEEEEEcCCCcEE-EEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSES-LQRVVRLSRNGDLMVTGGTDGHLR-LWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ++.+++ +..++... .+. .|.. .+..++|+ ||+.|++++.+..+. +||+.+++.. .+..|...+..++|+|||+
T Consensus       316 ~~~i~~~~~~~~~~~-~~~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~  391 (1045)
T 1k32_A          316 RGQAFIQDVSGTYVL-KVP-EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGK  391 (1045)
T ss_dssp             TTEEEEECTTSSBEE-ECS-CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSS
T ss_pred             cCEEEEEcCCCCceE-Ecc-CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCC
Confidence            567777 66666543 344 6777 89999999 999999988888888 9998876654 4447888999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc--ccccCCCCeEEEEeCCC
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL--AQNKRGISYVQQWDVDS  250 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~--~~~g~~d~~i~~wd~~~  250 (297)
                      +|++++.++.|++||+.+++....+..|..          .+..++|+|||++|++.+...  -..+..++.|++||+.+
T Consensus       392 ~la~~~~~~~v~~~d~~tg~~~~~~~~~~~----------~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          392 FAVVANDRFEIMTVDLETGKPTVIERSREA----------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSS----------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             EEEEECCCCeEEEEECCCCceEEeccCCCC----------CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            999999999999999999887666544431          123477999999998865400  00002246999999998


Q ss_pred             CceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         251 GRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       251 ~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++ ...+..+.. +.+++|+|||++|++++. ++...+|+...
T Consensus       462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~-~~~~~~~~~~~  502 (1045)
T 1k32_A          462 RK-IFAATTENSHDYAPAFDADSKNLYYLSY-RSLDPSPDRVV  502 (1045)
T ss_dssp             TE-EEECSCSSSBEEEEEECTTSCEEEEEES-CCCCCEECSSS
T ss_pred             Cc-EEEeeCCCcccCCceEcCCCCEEEEEec-ccCCcCcchhc
Confidence            87 555555554 889999999999999998 88888887644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.71  E-value=2.5e-15  Score=127.32  Aligned_cols=181  Identities=14%  Similarity=0.147  Sum_probs=122.4

Q ss_pred             CCceEEE-EeeCCCe--EEEEecCCCCcEEEEEEecCCCEEEEEc-CCCcEEEEeCC-CCe--eeEEecc---------c
Q psy3337          95 KEKNLRF-GFKTFDS--VQTVFAGSESLQRVVRLSRNGDLMVTGG-TDGHLRLWSFP-KMK--PLLHIEA---------H  158 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~-~~~--~~~~~~~---------~  158 (297)
                      .++.|++ ++.+++.  +..+. .+...+..++|+|+|++|++++ .++.|.+|++. ++.  .+..+..         +
T Consensus        61 ~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~  139 (347)
T 3hfq_A           61 DEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQD  139 (347)
T ss_dssp             TEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCS
T ss_pred             CCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcccc
Confidence            4678888 8876653  33333 4666778999999999888877 78899999996 332  3333321         1


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSK-NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      ...+.+++|+|+++++++...++.|.+||+. +++.........+.+       .....++|+|||++++++.       
T Consensus       140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-------~~p~~~~~spdg~~l~v~~-------  205 (347)
T 3hfq_A          140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-------FGPRHLVFSPDGQYAFLAG-------  205 (347)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-------CCEEEEEECTTSSEEEEEE-------
T ss_pred             CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-------CCCceEEECCCCCEEEEEe-------
Confidence            2248899999999966666678899999998 454322211111111       0122478999999877753       


Q ss_pred             CCCCeEEEEeCCC--Cce--EEEeccC-------CCeEEEEEcCCCCEEE-EEecCCCeEEEEEeC
Q psy3337         238 RGISYVQQWDVDS--GRL--RLAREMK-------ESLSALAVRDDGRFVA-VGTMFTGSVFVYIAF  291 (297)
Q Consensus       238 ~~d~~i~~wd~~~--~~~--~~~~~~~-------~~v~~~~~s~dg~~l~-~~~~~dg~i~vwd~~  291 (297)
                      ..++.|.+|++..  ++.  +..+...       ..+..++|+|||++|+ +... ++.|.+|++.
T Consensus       206 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-~~~v~v~~~~  270 (347)
T 3hfq_A          206 ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-YNTLAVFAVT  270 (347)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-TTEEEEEEEC
T ss_pred             CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-CCEEEEEEEC
Confidence            3478999999874  443  2222221       2388999999999875 5556 8999999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.71  E-value=3.3e-17  Score=152.20  Aligned_cols=193  Identities=9%  Similarity=-0.017  Sum_probs=132.7

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCC---cEEEEEEecCCCEEEEEcC---------CCcEEEEeCCCCeee--EEecccc
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSES---LQRVVRLSRNGDLMVTGGT---------DGHLRLWSFPKMKPL--LHIEAHS  159 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~s~~~---------d~~i~iwd~~~~~~~--~~~~~~~  159 (297)
                      .|++|++ +..+++....+. +|..   .+.+++|||||++|++++.         ++.|++||+.+++.+  ..+   .
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~  109 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---P  109 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---C
T ss_pred             CCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---C
Confidence            5889999 888888766654 4433   3889999999999998876         789999999988763  223   2


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEe-----------eeeeeeeeCCCCeEEEE
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKR-----------CRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~l~~  228 (297)
                      ..+..++|||||+.|+.+. ++.|++||+.+++..........   ..++..           .....++|+|||+.|++
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~---~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~  185 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE---NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY  185 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT---TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred             cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc---CCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence            4688999999999999885 78999999988776543211111   111100           01135889999999998


Q ss_pred             eccCc------------------------cccc--CCCCeEEEEeCCCCceE---EE-----eccCCC-eEEEEEcCCCC
Q psy3337         229 LANPL------------------------AQNK--RGISYVQQWDVDSGRLR---LA-----REMKES-LSALAVRDDGR  273 (297)
Q Consensus       229 ~~~~~------------------------~~~g--~~d~~i~~wd~~~~~~~---~~-----~~~~~~-v~~~~~s~dg~  273 (297)
                      .+...                        -..|  .....|++||+.+++..   ..     +..+.. +.+++||||++
T Consensus       186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~  265 (719)
T 1z68_A          186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER  265 (719)
T ss_dssp             EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred             EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence            76410                        0000  11238999999987652   21     223554 89999999988


Q ss_pred             EEEEEecC-C--CeEEEEE----eCCcee
Q psy3337         274 FVAVGTMF-T--GSVFVYI----AFSLQM  295 (297)
Q Consensus       274 ~l~~~~~~-d--g~i~vwd----~~~~~~  295 (297)
                      ++++.... +  ..|.+||    +.+++.
T Consensus       266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          266 VCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             EEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             EEEEEeccccCeEEEEEEcccCCCCCCce
Confidence            77775430 2  3588999    777664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.70  E-value=3e-16  Score=142.37  Aligned_cols=178  Identities=10%  Similarity=0.005  Sum_probs=127.3

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC----CcEEEEeCCCCeeeEEeccccCCeeEEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD----GHLRLWSFPKMKPLLHIEAHSKEIDDVD  166 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~  166 (297)
                      +++.++.. + ++.+++...... .+.   .+++|||||++|++++.+    ..|++||+.+++.. .+..|...+..++
T Consensus       128 s~~~~~~~-l~d~~~g~~~~l~~-~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~  201 (582)
T 3o4h_A          128 GATEDRVA-LYALDGGGLRELAR-LPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSAS  201 (582)
T ss_dssp             EECSSCEE-EEEEETTEEEEEEE-ESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEE
T ss_pred             ecCCCCce-EEEccCCcEEEeec-CCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccce
Confidence            44455555 6 888887655443 333   689999999999988777    78999999887754 6778888899999


Q ss_pred             EccCCCEEEEEeCCC--cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         167 FSISGEQIVSIAKDG--KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      |+|||+.|+++..++  .|++||+.+++.. .+..+........  .......+|+|||..+++...        ++.++
T Consensus       202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~spdg~~~~~~~~--------~g~~~  270 (582)
T 3o4h_A          202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR--PTAITWLGYLPDGRLAVVARR--------EGRSA  270 (582)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC--CSEEEEEEECTTSCEEEEEEE--------TTEEE
T ss_pred             ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh--hccccceeEcCCCcEEEEEEc--------CCcEE
Confidence            999999999888888  8999999988776 5444321100000  001112338999976666444        89999


Q ss_pred             EEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCC---eEEEEEeCC
Q psy3337         245 QWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTG---SVFVYIAFS  292 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg---~i~vwd~~~  292 (297)
                      +|++  ++.....  ...+.+++|+ +|+++++++. +.   .+++||+.+
T Consensus       271 l~~~--g~~~~~~--~~~v~~~~~s-dg~~l~~~s~-~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          271 VFID--GERVEAP--QGNHGRVVLW-RGKLVTSHTS-LSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEET--TEEECCC--SSEEEEEEEE-TTEEEEEEEE-TTEEEEEEEETTCC
T ss_pred             EEEE--CCeeccC--CCceEEEEec-CCEEEEEEcC-CCCCCeEEEEcCCC
Confidence            9999  6655422  2348999999 9999988887 64   466666543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=2e-14  Score=118.37  Aligned_cols=179  Identities=16%  Similarity=0.095  Sum_probs=130.1

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec--cccCCeeEEEEccCCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE--AHSKEIDDVDFSISGE  172 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~  172 (297)
                      ++.|++ + .+++.+..+...+...+.+++++|+|+++++...++.|.+||. .++.+..+.  .+...+.+++++|+++
T Consensus        99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence            566766 5 6677766664345567899999999998888888899999995 455555553  3445689999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC-eEEEEeCCCC
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-YVQQWDVDSG  251 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~-~i~~wd~~~~  251 (297)
                      ++++...++.|++||. +++.+..+..+...        .....++++++|..+++...        ++ .|.+||.. +
T Consensus       177 l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~--------~~p~~i~~d~~G~l~v~~~~--------~~~~i~~~~~~-g  238 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNY-EGQYLRQIGGEGIT--------NYPIGVGINSNGEILIADNH--------NNFNLTIFTQD-G  238 (286)
T ss_dssp             EEEEEGGGTEEEEEET-TCCEEEEESCTTTS--------CSEEEEEECTTCCEEEEECS--------SSCEEEEECTT-S
T ss_pred             EEEEECCCCEEEEEcC-CCCEEEEEccCCcc--------CCCcEEEECCCCCEEEEeCC--------CCEEEEEECCC-C
Confidence            8888788899999997 45555555432110        11224778999987766433        54 99999964 6


Q ss_pred             ceEEEeccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         252 RLRLAREMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       252 ~~~~~~~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +.+..+..+.   .+.+++++|+|+++++ +. ++.|++|++....++
T Consensus       239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~-~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          239 QLISALESKVKHAQCFDVALMDDGSVVLA-SK-DYRLYIYRYVQLAPV  284 (286)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEEEE-ET-TTEEEEEECSCCCCT
T ss_pred             CEEEEEcccCCCCcceeEEECCCCcEEEE-CC-CCeEEEEEccccccc
Confidence            6666665432   2789999999987666 67 999999998776554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=5.4e-15  Score=126.27  Aligned_cols=197  Identities=12%  Similarity=0.086  Sum_probs=140.4

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc----------CCCcEEEEeCCCCeeeEEeccc----
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG----------TDGHLRLWSFPKMKPLLHIEAH----  158 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~----  158 (297)
                      ..|+.|.+ |..+++.+..+. .+..+  .++|+|||++++++.          .++.|.+||..+++.+..+...    
T Consensus        28 ~~d~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~  104 (361)
T 2oiz_A           28 LTESRVHVYDYTNGKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV  104 (361)
T ss_dssp             GGGCEEEEEETTTCCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred             cccCeEEEEECCCCeEEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence            34778888 999999888887 55554  899999999998876          3678999999998888777532    


Q ss_pred             --cCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeee-eeccC-------CC-----------CceEEEEe----
Q psy3337         159 --SKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLSKE-LKWNT-------PD-----------NIKYLFKR----  211 (297)
Q Consensus       159 --~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~~~-~~~~~-------~~-----------~~~~~~~~----  211 (297)
                        ......++|+|+|++|+++..  ++.|.+||+.+++.+.. +....       |.           +....+..    
T Consensus       105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence              345678999999999998864  68899999998877665 32110       00           00000000    


Q ss_pred             ---------------------------------------------------------------------eeeeeeeeCCC
Q psy3337         212 ---------------------------------------------------------------------CRYGLVEDSPK  222 (297)
Q Consensus       212 ---------------------------------------------------------------------~~~~~~~~s~~  222 (297)
                                                                                           .....++++|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence                                                                                 00001566777


Q ss_pred             CeEEEEeccCccccc---CCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc--eec
Q psy3337         223 RSRLFTLANPLAQNK---RGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL--QMC  296 (297)
Q Consensus       223 ~~~l~~~~~~~~~~g---~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~--~~~  296 (297)
                      +..++.+..+.-..+   .....|.+||+.+++.+..+..+. +.+++|+|||++|++++  ++.|.+||+.++  +.+
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n--~~~v~v~D~~t~~l~~~  340 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD--GGNVNVYDISQPEPKLL  340 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC--SSCEEEEECSSSSCEEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC--CCeEEEEECCCCcceee
Confidence            666665431000000   013589999999999999998888 99999999999988777  499999999999  764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=141.85  Aligned_cols=139  Identities=11%  Similarity=0.109  Sum_probs=106.0

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC---CeeEEEEccCCCEEEEEeC---------CCcEEEEEcC
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK---EIDDVDFSISGEQIVSIAK---------DGKAFVWNSK  189 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~s~~~---------d~~v~lwd~~  189 (297)
                      .++|+|+|+++++ +.|+.|++||+.+++....+..|..   .+.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            7899999965554 4699999999999988777765544   4899999999999998876         7899999999


Q ss_pred             CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec-cCCC-e----
Q psy3337         190 NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE-MKES-L----  263 (297)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~-~~~~-v----  263 (297)
                      +++.+......           ..+..++|||||+.|+++.         ++.|++||+.+++...... ++.. |    
T Consensus        99 ~g~~~~~~~l~-----------~~~~~~~~SPDG~~la~~~---------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~  158 (719)
T 1z68_A           99 NGEFVRGNELP-----------RPIQYLCWSPVGSKLAYVY---------QNNIYLKQRPGDPPFQITFNGRENKIFNGI  158 (719)
T ss_dssp             TTEECCSSCCC-----------SSBCCEEECSSTTCEEEEE---------TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred             CCccccceecC-----------cccccceECCCCCEEEEEE---------CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence            88763111111           1133478999999999864         6799999999887765432 2221 2    


Q ss_pred             -------------EEEEEcCCCCEEEEEecCC
Q psy3337         264 -------------SALAVRDDGRFVAVGTMFT  282 (297)
Q Consensus       264 -------------~~~~~s~dg~~l~~~~~~d  282 (297)
                                   .+++|||||++|++++. |
T Consensus       159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~-d  189 (719)
T 1z68_A          159 PDWVYEEEMLATKYALWWSPNGKFLAYAEF-N  189 (719)
T ss_dssp             CCHHHHHHTTCSSCCEEECTTSSEEEEEEE-E
T ss_pred             ccceeeeecccCcccEEECCCCCEEEEEEE-C
Confidence                         48999999999999886 5

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=2e-15  Score=140.77  Aligned_cols=186  Identities=11%  Similarity=0.002  Sum_probs=120.4

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE-eccccCCe------------
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEI------------  162 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v------------  162 (297)
                      +.+.+ ++.+++.. .+. .|...+..++|||||+.||.+ .++.|++||+.+++..+. ..++...+            
T Consensus        92 ~~~~~~d~~~~~~~-~l~-~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           92 ASYDIYDLNKRQLI-TEE-RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEEETTTTEEC-CSS-CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             eEEEEEECCCCcEE-Ecc-cCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence            55667 88887654 344 777889999999999999988 468999999988775432 22332222            


Q ss_pred             -----eEEEEccCCCEEEEEeCCC------------------------------------cEEEEEcCC---Cce--eee
Q psy3337         163 -----DDVDFSISGEQIVSIAKDG------------------------------------KAFVWNSKN---GSL--SKE  196 (297)
Q Consensus       163 -----~~~~~sp~~~~l~s~~~d~------------------------------------~v~lwd~~~---~~~--~~~  196 (297)
                           ..+.|||||+.|+..+.|.                                    +|++||+.+   ++.  ...
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~  248 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ  248 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence                 3589999999999875432                                    366777766   531  122


Q ss_pred             eeccCC--CCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc----eEE--Ee--ccCCC-eE-
Q psy3337         197 LKWNTP--DNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR----LRL--AR--EMKES-LS-  264 (297)
Q Consensus       197 ~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~----~~~--~~--~~~~~-v~-  264 (297)
                      +.....  ....      .+..++|+|||+.++....    .++.+..|++||+.+++    +..  .+  ..+.. |. 
T Consensus       249 l~~~~~~~~~~~------~~~~~~wspdg~~~~~~~~----r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~  318 (740)
T 4a5s_A          249 ITAPASMLIGDH------YLCDVTWATQERISLQWLR----RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR  318 (740)
T ss_dssp             ECCCHHHHTSCE------EEEEEEEEETTEEEEEEEE----SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred             ecCCccCCCCCe------EEEEEEEeCCCeEEEEEeC----CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence            211000  0001      2335889999997665443    13456689999999877    221  11  22332 33 


Q ss_pred             ----EEEEcCCCCEEE-EEecCCC--eEEEEEeCCcee
Q psy3337         265 ----ALAVRDDGRFVA-VGTMFTG--SVFVYIAFSLQM  295 (297)
Q Consensus       265 ----~~~~s~dg~~l~-~~~~~dg--~i~vwd~~~~~~  295 (297)
                          .+.|+|||+.|+ ..+..+|  .|++||+.+++.
T Consensus       319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence                789999999877 6654244  688888876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.65  E-value=2.3e-14  Score=123.04  Aligned_cols=187  Identities=11%  Similarity=0.041  Sum_probs=136.3

Q ss_pred             eEEEEeeCCCeEEEEecCCCCcEEE-----EEEecCCCEEEEEcC-CC--cEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          98 NLRFGFKTFDSVQTVFAGSESLQRV-----VRLSRNGDLMVTGGT-DG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        98 ~i~~~~~~~~~~~~~~~~h~~~v~~-----~~~s~~g~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      .+.++..++..+..+. .|......     .+|||||++|+.++. ++  .|.+||+.+++.......+...+..+.|+|
T Consensus        12 ~~~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           12 DTYQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             EEEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred             eEEecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence            4445777788887777 67666555     889999999998887 66  488899999887776666666666789999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC--------------ccc
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP--------------LAQ  235 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--------------~~~  235 (297)
                      |++.|+.++.++.|++||+.+++....+..+.    .....    ....++|++..++.....              ...
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~----~~~~~----~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPA----EWVGY----GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY  162 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCT----TEEEE----EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeechh----hcccc----cceeECCCCCeeccccccCcccccccccchhhhhh
Confidence            99999999999999999999887765554332    11110    112358999988754310              011


Q ss_pred             ccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcC-CCCEEEEEecCCC------eEEEEEeCCce
Q psy3337         236 NKRGISYVQQWDVDSGRLRLAREMKESLSALAVRD-DGRFVAVGTMFTG------SVFVYIAFSLQ  294 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~~dg------~i~vwd~~~~~  294 (297)
                      ....+..|++||+.+++..........+..++|+| ||+.|+.... ++      .|.++|+.+++
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          163 FTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHE-GPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             GGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC-SCTTTSSCSEEEEETTSCC
T ss_pred             ccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEe-cCCCCCcceEEEEeCCCCc
Confidence            23456899999999987766655555599999999 9999988775 43      78888876543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=3.7e-15  Score=139.00  Aligned_cols=193  Identities=11%  Similarity=-0.009  Sum_probs=133.8

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCc-----EEEEEEecCCCEEEEEcCC---------CcEEEEeCCCCeeeEEeccccC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESL-----QRVVRLSRNGDLMVTGGTD---------GHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~-----v~~~~~s~~g~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      |++|++ ++.+++....+. +|...     ...++|||||++|+.++.+         +.+.+||+.+++.. .+..|..
T Consensus        35 ~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~  112 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPN  112 (740)
T ss_dssp             TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCT
T ss_pred             CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCC
Confidence            889999 999998876666 66532     2347899999999998876         56679999998754 4667788


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEe-----------eeeeeeeeCCCCeEEEEe
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKR-----------CRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~l~~~  229 (297)
                      .+..++|||||+.||.+ .|+.|++||+.++...+... ....  ...+..           .....++|||||+.|+..
T Consensus       113 ~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~-~g~~--~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          113 NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW-TGKE--DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS-CCBT--TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             cceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC-CCCc--cceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            89999999999999988 46899999998876543221 1100  111110           112247899999999887


Q ss_pred             ccC--------------------------cccccCCC--CeEEEEeCCC---C---ceEEEec-----cCCC-eEEEEEc
Q psy3337         230 ANP--------------------------LAQNKRGI--SYVQQWDVDS---G---RLRLARE-----MKES-LSALAVR  269 (297)
Q Consensus       230 ~~~--------------------------~~~~g~~d--~~i~~wd~~~---~---~~~~~~~-----~~~~-v~~~~~s  269 (297)
                      ...                          +-..|...  ..|++||+.+   +   +......     .+.. +..++|+
T Consensus       189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws  268 (740)
T 4a5s_A          189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (740)
T ss_dssp             EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence            431                          00112222  2689999998   7   3333322     2444 9999999


Q ss_pred             CCCCEEEEEecC---CCeEEEEEeCCce
Q psy3337         270 DDGRFVAVGTMF---TGSVFVYIAFSLQ  294 (297)
Q Consensus       270 ~dg~~l~~~~~~---dg~i~vwd~~~~~  294 (297)
                      |||+.++.....   +..|++||+.+++
T Consensus       269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          269 TQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             ETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            999977665431   3479999998876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=3.5e-14  Score=116.66  Aligned_cols=188  Identities=13%  Similarity=0.090  Sum_probs=147.8

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCC-CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc-CCeeEEE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSE-SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS-KEIDDVD  166 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~  166 (297)
                      ..+++.++.|.+ |..+|+.+..+. .+. ..+.++.++|+|++|+  +.++.|..||. +++.+..+..+. ..+.++.
T Consensus         8 lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~   83 (276)
T 3no2_A            8 LVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTAR   83 (276)
T ss_dssp             EEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEE
T ss_pred             EEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccE
Confidence            446788999999 988999998887 444 4678999999999888  35778999998 899998888653 4788999


Q ss_pred             EccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         167 FSISGEQIVSIAK-DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       167 ~sp~~~~l~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +.|+|+++++.+. ++.|..+|. +|+.+..+.........    ......+...++|.++++...        ++.|..
T Consensus        84 ~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~----~~~~~~v~~~~~G~~lv~~~~--------~~~v~~  150 (276)
T 3no2_A           84 ILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERP----HAQFRQINKNKKGNYLVPLFA--------TSEVRE  150 (276)
T ss_dssp             ECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSG----GGSCSCCEECTTSCEEEEETT--------TTEEEE
T ss_pred             ECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcc----cccccCceECCCCCEEEEecC--------CCEEEE
Confidence            9999999999887 778888885 77777766532110000    001123456899999988554        899999


Q ss_pred             EeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         246 WDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ||.. |+.+..+.....+.++.+.++|+.++++.. ++.|..||..+|+.+
T Consensus       151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          151 IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD-AHCFVQLNLESNRIV  199 (276)
T ss_dssp             ECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT-TSEEEEECTTTCCEE
T ss_pred             ECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC-CCeEEEEeCcCCcEE
Confidence            9998 999998887666778888999999999998 889999999988764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.63  E-value=8.3e-14  Score=118.59  Aligned_cols=192  Identities=13%  Similarity=0.095  Sum_probs=124.3

Q ss_pred             CCCCceEEE-Ee--eCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC----CcEEEEeCCC--Ce--eeEEeccccCC
Q psy3337          93 DSKEKNLRF-GF--KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD----GHLRLWSFPK--MK--PLLHIEAHSKE  161 (297)
Q Consensus        93 ~~~d~~i~~-~~--~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----~~i~iwd~~~--~~--~~~~~~~~~~~  161 (297)
                      .+.++.|.+ .+  .+++....... +...+..++|+|+|++|++++.+    +.|.+|++..  ++  .+..+..+...
T Consensus        23 ~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~  101 (361)
T 3scy_A           23 SGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD  101 (361)
T ss_dssp             SSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred             CCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence            345667777 44  55665444332 56667789999999999988876    7999998864  44  33344445566


Q ss_pred             eeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeee---ccCCCCce-EEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         162 IDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLSKELK---WNTPDNIK-YLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      ...+++  ++++|++++ .++.|.+|++.....+..+.   .+...+.. ..........++|+|+|++++++..     
T Consensus       102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----  174 (361)
T 3scy_A          102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL-----  174 (361)
T ss_dssp             EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET-----
T ss_pred             cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC-----
Confidence            778888  788777766 57899999997543332221   11000000 0000011234789999998777532     


Q ss_pred             cCCCCeEEEEeCCCCc-------e-------EEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         237 KRGISYVQQWDVDSGR-------L-------RLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~-------~-------~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                        .++.|.+|++....       .       ...+.....+..++|+|||++|++++..++.|.+||+.+++
T Consensus       175 --~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          175 --GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             --TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             --CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence              47899999887532       2       11222333489999999999888777338999999998664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.61  E-value=4.5e-13  Score=112.82  Aligned_cols=188  Identities=10%  Similarity=0.048  Sum_probs=133.2

Q ss_pred             CCCCCceEEE-EeeCCC--eEEEEe--------cCCCCcEEEEEEec-CCCEEEEEc-CCCcEEEEeCCCCeeeEEeccc
Q psy3337          92 IDSKEKNLRF-GFKTFD--SVQTVF--------AGSESLQRVVRLSR-NGDLMVTGG-TDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~--~~~~~~--------~~h~~~v~~~~~s~-~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                      +...++.|++ +. .+.  .+..+.        .++......++++| +++++++.+ .++.|++|| .+++.+..+...
T Consensus       107 ~d~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~  184 (329)
T 3fvz_A          107 TDVALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEE  184 (329)
T ss_dssp             EETTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEE
T ss_pred             EECCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccC
Confidence            4445566666 44 333  344441        13444688999999 788888886 689999999 567766666422


Q ss_pred             ----------cCCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEE
Q psy3337         159 ----------SKEIDDVDFSIS-GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF  227 (297)
Q Consensus       159 ----------~~~v~~~~~sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  227 (297)
                                -.....++++|+ +.++++...++.|++||..+++.+..+.......  .      ...++++| +..+.
T Consensus       185 g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~--~------~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          185 SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR--N------VFAISYIP-GFLFA  255 (329)
T ss_dssp             CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT--C------EEEEEEET-TEEEE
T ss_pred             CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC--C------cceeeecC-CEEEE
Confidence                      234889999998 7777777788999999998888888775432211  1      11366788 43333


Q ss_pred             EeccCcccccCCCCeEEEEeCCCCceEEEec---cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         228 TLANPLAQNKRGISYVQQWDVDSGRLRLARE---MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       228 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~---~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      . .....++...+..|++||+.+++.+..+.   .+.. +..++++|+|.++++... ++.|++|++..
T Consensus       256 ~-~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~-~~~I~~~~~~~  322 (329)
T 3fvz_A          256 V-NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH-TNTVWKFTLTE  322 (329)
T ss_dssp             E-ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESS-SCCEEEEEEEE
T ss_pred             e-CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECC-CCEEEEEeCCc
Confidence            3 33344556667899999999999998874   3333 999999999977777777 99999999864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.59  E-value=1.4e-13  Score=117.59  Aligned_cols=181  Identities=10%  Similarity=0.078  Sum_probs=119.8

Q ss_pred             eEEE-Eee-CCCeEEEEe-cCCCCcEEEEEEecCCCE--EEEEc-------------CCCcEEEEeCC-CCeeeEEec--
Q psy3337          98 NLRF-GFK-TFDSVQTVF-AGSESLQRVVRLSRNGDL--MVTGG-------------TDGHLRLWSFP-KMKPLLHIE--  156 (297)
Q Consensus        98 ~i~~-~~~-~~~~~~~~~-~~h~~~v~~~~~s~~g~~--l~s~~-------------~d~~i~iwd~~-~~~~~~~~~--  156 (297)
                      .|.+ ++. +++...... ..+. .+.+++|+|+|++  ++++.             .++.+.+|++. +++....+.  
T Consensus        61 ~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~  139 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY  139 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred             eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence            7887 776 776544332 1112 2456899999984  55553             68999999997 465543333  


Q ss_pred             --cccCCeeEEEEccCCCEEEEEeC-CCcEEEEEcC-CCceee--eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         157 --AHSKEIDDVDFSISGEQIVSIAK-DGKAFVWNSK-NGSLSK--ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       157 --~~~~~v~~~~~sp~~~~l~s~~~-d~~v~lwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                        .+...+.+++|+|+|++|+++.. ++.|++||+. +++...  .+....+ +       .....++|+|+|++++++.
T Consensus       140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~-g-------~~p~~~~~spdg~~l~v~~  211 (365)
T 1jof_A          140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP-G-------DHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST-T-------CCEEEEEECTTSSEEEEEE
T ss_pred             EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC-C-------CCCCEeEECCCCCEEEEEE
Confidence              24567999999999998887764 6799999998 665432  2221100 1       1123478999999988754


Q ss_pred             cCcccccCCCCeEEEEeCC--CCceEE------Eecc----CC-------CeEEEE-EcCCCCEEEEEecCCC-----eE
Q psy3337         231 NPLAQNKRGISYVQQWDVD--SGRLRL------AREM----KE-------SLSALA-VRDDGRFVAVGTMFTG-----SV  285 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~--~~~~~~------~~~~----~~-------~v~~~~-~s~dg~~l~~~~~~dg-----~i  285 (297)
                      .       .++.|.+|++.  +++...      .+..    +.       .+..++ |+|||++|+++...++     .|
T Consensus       212 ~-------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i  284 (365)
T 1jof_A          212 E-------AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI  284 (365)
T ss_dssp             T-------TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred             C-------CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence            3       36789998765  465421      2221    12       478999 9999999887764123     89


Q ss_pred             EEEEeC-Cce
Q psy3337         286 FVYIAF-SLQ  294 (297)
Q Consensus       286 ~vwd~~-~~~  294 (297)
                      .+|++. +++
T Consensus       285 ~v~~~~~~g~  294 (365)
T 1jof_A          285 AGFKLRDCGS  294 (365)
T ss_dssp             EEEEECTTSC
T ss_pred             EEEEECCCCC
Confidence            999995 554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.58  E-value=1.6e-13  Score=117.67  Aligned_cols=181  Identities=13%  Similarity=0.030  Sum_probs=127.8

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEE--EccCCCEE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD--FSISGEQI  174 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l  174 (297)
                      .|.+ ++.+++...... ++...+..+.|+|||+.|+.++.++.|++||+.+++....+..+...+....  ++|+++++
T Consensus        61 ~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l  139 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKL  139 (388)
T ss_dssp             EEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             eEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCee
Confidence            4777 888877665554 6666555778999999999999999999999999887666665665554444  48999988


Q ss_pred             EEE----------------------eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC-CCeEEEEecc
Q psy3337         175 VSI----------------------AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP-KRSRLFTLAN  231 (297)
Q Consensus       175 ~s~----------------------~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~  231 (297)
                      +..                      ..+..|++||+.+++...... +.          ..+..+.|+| ||+.|+.+..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~----------~~~~~~~~sp~dg~~l~~~~~  208 (388)
T 3pe7_A          140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-EN----------QWLGHPIYRPYDDSTVAFCHE  208 (388)
T ss_dssp             EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ES----------SCEEEEEEETTEEEEEEEEEC
T ss_pred             ccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CC----------ccccccEECCCCCCEEEEEEe
Confidence            743                      234679999998886543332 21          1233577999 9999888764


Q ss_pred             CcccccC---CCCeEEEEeCCCCceEEEeccCC--CeEEEEEcCCCCEEEEEecCCC----eEEEEEeCCcee
Q psy3337         232 PLAQNKR---GISYVQQWDVDSGRLRLAREMKE--SLSALAVRDDGRFVAVGTMFTG----SVFVYIAFSLQM  295 (297)
Q Consensus       232 ~~~~~g~---~d~~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~~~dg----~i~vwd~~~~~~  295 (297)
                           +.   ....|.++|+..++.........  .+..++|+|||+.|+..+..++    .|++||+.+++.
T Consensus       209 -----~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          209 -----GPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             -----SCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             -----cCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence                 22   14488999988665554444442  3788999999998765443122    399999988763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=1.2e-12  Score=117.80  Aligned_cols=196  Identities=11%  Similarity=0.056  Sum_probs=141.5

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCC--CCeeeEEeccccCCeeEEEE
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP--KMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~  167 (297)
                      .+...+++|.+ |..+++.+..+..+  ..+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.... ....++|
T Consensus       171 V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~  247 (567)
T 1qks_A          171 VTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIET  247 (567)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEE
T ss_pred             EEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEE
Confidence            35667889999 99999999888633  245699999999999999999999999995  777777776533 4679999


Q ss_pred             c----cCCCEEEEEeC-CCcEEEEEcCCCceeeeeeccCCCCceEEEE-eeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         168 S----ISGEQIVSIAK-DGKAFVWNSKNGSLSKELKWNTPDNIKYLFK-RCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       168 s----p~~~~l~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      +    |||++++++.. +++|.++|..+.+.+..+...........+. ..++..+..++++..++..       -...+
T Consensus       248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~-------~~~~g  320 (567)
T 1qks_A          248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN-------VKETG  320 (567)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE-------ETTTT
T ss_pred             ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE-------ecCCC
Confidence            9    69998887764 5999999999988887765321000000000 1133345667775544432       23479


Q ss_pred             eEEEEeCCCCce--EEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         242 YVQQWDVDSGRL--RLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       242 ~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .|.++|....+.  +..+........+.|+|+|++|+++...++.|.++|+.+++.+
T Consensus       321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence            999999987542  2333333348889999999998877654899999999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.55  E-value=1.7e-13  Score=126.05  Aligned_cols=187  Identities=11%  Similarity=-0.015  Sum_probs=123.2

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCCcEE---------EEEEe--cCCCE-EEEEcC-CCcEEEEeCC--C-CeeeEEec
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSESLQR---------VVRLS--RNGDL-MVTGGT-DGHLRLWSFP--K-MKPLLHIE  156 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~~v~---------~~~~s--~~g~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~  156 (297)
                      ..++...| ....+.....+. .|...+.         ...|+  |||+. |+..+. +..|++|++.  . ++ ...+.
T Consensus        44 ~~~~~~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~  121 (662)
T 3azo_A           44 AEAGRATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLT  121 (662)
T ss_dssp             TTTTEEEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECS
T ss_pred             ccCCcEEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEecc
Confidence            44566666 334444455565 5655555         56666  99988 766544 5677777765  2 33 44555


Q ss_pred             c-----ccCCeeEEEEccCCCEEEEEeCC----------CcEEEEEcCC------Cceeeeee-ccCCCCceEEEEeeee
Q psy3337         157 A-----HSKEIDDVDFSISGEQIVSIAKD----------GKAFVWNSKN------GSLSKELK-WNTPDNIKYLFKRCRY  214 (297)
Q Consensus       157 ~-----~~~~v~~~~~sp~~~~l~s~~~d----------~~v~lwd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~  214 (297)
                      .     |...+.+++|+|||+.|++++.+          ..|++||+.+      +.. ..+. .+.    .      .+
T Consensus       122 ~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~----~------~~  190 (662)
T 3azo_A          122 PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH----R------FV  190 (662)
T ss_dssp             CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS----S------EE
T ss_pred             CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC----C------cc
Confidence            5     66778999999999999988876          5899999987      443 3332 221    1      12


Q ss_pred             eeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC-CC---ceEEEeccCC-CeEEEEEcCCCCEEEEEecCCC--eEEE
Q psy3337         215 GLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD-SG---RLRLAREMKE-SLSALAVRDDGRFVAVGTMFTG--SVFV  287 (297)
Q Consensus       215 ~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~-~~---~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~~dg--~i~v  287 (297)
                      ..++|+|||++|+..+...-...-....|++||+. ++   +.......+. .+..++|+|||++++++.. ++  .|++
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~-~~~~~l~~  269 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR-TGWWNLHR  269 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT-TSSCEEEE
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECC-CCCeEEEE
Confidence            24779999999988654100000012589999999 57   4444445543 4999999999997777777 88  6677


Q ss_pred             EEeCCce
Q psy3337         288 YIAFSLQ  294 (297)
Q Consensus       288 wd~~~~~  294 (297)
                      ||+.+++
T Consensus       270 ~~~~~~~  276 (662)
T 3azo_A          270 VDPATGA  276 (662)
T ss_dssp             ECTTTCC
T ss_pred             EECCCCc
Confidence            7765554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.54  E-value=9.8e-13  Score=110.75  Aligned_cols=188  Identities=13%  Similarity=0.068  Sum_probs=132.2

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-eeEEe---------ccccCCee
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-PLLHI---------EAHSKEID  163 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~v~  163 (297)
                      .+++|.+ +..+++.+..+..++......++++|+|+++++...++.|++||..... .+..+         ..+-....
T Consensus        67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~  146 (329)
T 3fvz_A           67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT  146 (329)
T ss_dssp             CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred             cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence            3567888 8888888766643455678899999999999999899999999975442 45555         23445689


Q ss_pred             EEEEcc-CCCEEEEEe-CCCcEEEEEcCCCceeeeeeccCCC----CceEEEEeeeeeeeeeCCC-CeEEEEeccCcccc
Q psy3337         164 DVDFSI-SGEQIVSIA-KDGKAFVWNSKNGSLSKELKWNTPD----NIKYLFKRCRYGLVEDSPK-RSRLFTLANPLAQN  236 (297)
Q Consensus       164 ~~~~sp-~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~~~  236 (297)
                      .++|+| ++.++++.+ .++.|++|| .++..+..+......    ...+    .....++++|+ +..+++-       
T Consensus       147 ~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~----~~p~gia~d~~~g~l~v~d-------  214 (329)
T 3fvz_A          147 DVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQF----SVPHSLALVPHLDQLCVAD-------  214 (329)
T ss_dssp             EEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEE----SCEEEEEEETTTTEEEEEE-------
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCccc----CCCcEEEEECCCCEEEEEE-------
Confidence            999999 788888876 689999999 567776665432210    0011    11235888998 5555553       


Q ss_pred             cCCCCeEEEEeCCCCceEEEecc--CC-CeEEEEEcC------CCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREM--KE-SLSALAVRD------DGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~--~~-~v~~~~~s~------dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       ..++.|++||..+++.+..+..  +. .+.+++|+|      +|...++... +..|++||+.+++.+
T Consensus       215 -~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~-~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          215 -RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQE-PVQGFVMNFSSGEII  281 (329)
T ss_dssp             -TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSC-CCCEEEEETTTCCEE
T ss_pred             -CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCC-CcEEEEEEcCCCeEE
Confidence             3478999999998998888754  23 388999999      3332223333 558999998887654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=3.3e-12  Score=103.99  Aligned_cols=182  Identities=8%  Similarity=-0.032  Sum_probs=122.9

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEE
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI  174 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  174 (297)
                      ++.|.+ +..... ...+.......+..++++|+|+++++...++.|.+|+..+.............+.+++++|+++++
T Consensus        86 ~~~i~~~d~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  164 (270)
T 1rwi_B           86 NNRVVTLAAGSNN-QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY  164 (270)
T ss_dssp             TTEEEEECTTCSC-CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred             CCEEEEEeCCCce-EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence            455555 544433 222321333568899999999988887788899999865544333222333467899999999977


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE
Q psy3337         175 VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR  254 (297)
Q Consensus       175 ~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~  254 (297)
                      ++...++.|.+||..............          .....++++++|..+++..        .++.|.+||.......
T Consensus       165 v~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~p~~i~~d~~g~l~v~~~--------~~~~v~~~~~~~~~~~  226 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQVVLPFTDI----------TAPWGIAVDEAGTVYVTEH--------NTNQVVKLLAGSTTST  226 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECCCSSC----------CSEEEEEECTTCCEEEEET--------TTSCEEEECTTCSCCE
T ss_pred             EEECCCCEEEEEecCCCceEeecccCC----------CCceEEEECCCCCEEEEEC--------CCCcEEEEcCCCCcce
Confidence            777778899999987654432211110          1123477899996555533        3788999999765444


Q ss_pred             EEeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceecC
Q psy3337         255 LAREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       255 ~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      .....+ ..+.+++++++|+++++... ++.|++|++...+..+
T Consensus       227 ~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~v~~~~~~~~~~~~  269 (270)
T 1rwi_B          227 VLPFTGLNTPLAVAVDSDRTVYVADRG-NDRVVKLTSLEHHHHH  269 (270)
T ss_dssp             ECCCCSCSCEEEEEECTTCCEEEEEGG-GTEEEEECCCGGGSCC
T ss_pred             eeccCCCCCceeEEECCCCCEEEEECC-CCEEEEEcCCCccccC
Confidence            332222 34899999999998888888 9999999998876653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=5.8e-12  Score=105.85  Aligned_cols=184  Identities=13%  Similarity=0.043  Sum_probs=125.8

Q ss_pred             CCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEE
Q psy3337          95 KEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI  174 (297)
Q Consensus        95 ~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  174 (297)
                      .++.++.+  .++....+. .+...+.+++|+|+|++++++..++.|.+||..+++....+..+...+.+++|+|+++++
T Consensus        25 ~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~  101 (333)
T 2dg1_A           25 SESELQTI--TAEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLF  101 (333)
T ss_dssp             CGGGSCEE--ECEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEE
T ss_pred             ecccCccc--ccceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEE
Confidence            34455544  344555666 666678999999999988888899999999998877655443566789999999999988


Q ss_pred             EEEeCC----CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         175 VSIAKD----GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       175 ~s~~~d----~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      ++...+    +.|.+||..++.....+....+        ......++++|+|..+++.....  .....+.|..||..+
T Consensus       102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~i~~d~~g~l~v~~~~~~--~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLST--------AYCIDDMVFDSKGGFYFTDFRGY--STNPLGGVYYVSPDF  171 (333)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECSSSS--------CCCEEEEEECTTSCEEEEECCCB--TTBCCEEEEEECTTS
T ss_pred             EEeCCCCCCCceEEEEeCCCCEEEEEEccCcc--------CCcccceEECCCCCEEEEecccc--ccCCCceEEEEeCCC
Confidence            877666    6899999887655433321111        11234577899998776643200  001135677777776


Q ss_pred             CceEEEeccCCCeEEEEEcCCCCEEEEE-ecCCCeEEEEEeCC
Q psy3337         251 GRLRLAREMKESLSALAVRDDGRFVAVG-TMFTGSVFVYIAFS  292 (297)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~~dg~i~vwd~~~  292 (297)
                      ++..........+..++|+|+|++|+++ .. ++.|.+||+.+
T Consensus       172 ~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-~~~i~~~d~~~  213 (333)
T 2dg1_A          172 RTVTPIIQNISVANGIALSTDEKVLWVTETT-ANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEEEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEECT
T ss_pred             CEEEEeecCCCcccceEECCCCCEEEEEeCC-CCeEEEEEecC
Confidence            5554433333348899999999866554 45 78999999853

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.52  E-value=1.2e-11  Score=105.89  Aligned_cols=194  Identities=11%  Similarity=0.000  Sum_probs=134.4

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc----------CCCcEEEEeCCCCeeeEEeccc-------c
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG----------TDGHLRLWSFPKMKPLLHIEAH-------S  159 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------~  159 (297)
                      +|.+ |..+++.+..+..+ ..+  .++++|||++++.+.          .++.|.+||..+++.+..+...       .
T Consensus        48 ~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence            6777 99999988887633 333  899999999998875          3678999999988877766422       1


Q ss_pred             CCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeee-eeccC----------------CCCc---------------
Q psy3337         160 KEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLSKE-LKWNT----------------PDNI---------------  205 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~~~-~~~~~----------------~~~~---------------  205 (297)
                      .....+.|+|||++|+.+..  ++.|.++| .+++.+.. +....                +++.               
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~  203 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEe
Confidence            23458999999999998874  47899999 98887766 43210                0000               


Q ss_pred             ----------------------eEEEEe-----------------------------------eeeeeeeeCCCCeEEEE
Q psy3337         206 ----------------------KYLFKR-----------------------------------CRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       206 ----------------------~~~~~~-----------------------------------~~~~~~~~s~~~~~l~~  228 (297)
                                            .+.+..                                   .....+.++|++..++.
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence                                  000000                                   00011455666666665


Q ss_pred             eccCccccc---CCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC-EEEEEecCCCeEEEEEeCCceec
Q psy3337         229 LANPLAQNK---RGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       229 ~~~~~~~~g---~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .... ...+   ...+.|.++|+.+++.+..+.......++.|+|||+ .++++...++.|.+||+.+++.+
T Consensus       284 ~~~~-~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          284 LTSE-QSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             Eecc-CCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            4320 0000   023589999999999999987766689999999999 67777622899999999998875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.52  E-value=9.2e-13  Score=113.87  Aligned_cols=196  Identities=10%  Similarity=0.048  Sum_probs=138.4

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc----------CCCcEEEEeCCCCeeeEEeccc-------
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG----------TDGHLRLWSFPKMKPLLHIEAH-------  158 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------  158 (297)
                      +.|.+ |..+++.+.++..+.. +  .+.++|||++|+.+.          .++.|.++|..+++.+..+.-.       
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCCEEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence            78888 9999999999885543 3  799999999887765          4678999999999988776421       


Q ss_pred             cCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeccC----------------CCCceEEEEe---------
Q psy3337         159 SKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLSKELKWNT----------------PDNIKYLFKR---------  211 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~~~~~~~~----------------~~~~~~~~~~---------  211 (297)
                      ......+.|+|||++|+++..  ++.|.+.|+.+++.+..+....                +++....+..         
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            234568999999999998864  5789999999988766654310                0010000000         


Q ss_pred             ---------------------------------------------------------------eeeeeeeeCCCCeEEEE
Q psy3337         212 ---------------------------------------------------------------CRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       212 ---------------------------------------------------------------~~~~~~~~s~~~~~l~~  228 (297)
                                                                                     .....++++|++..++.
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence                                                                           00001445555555554


Q ss_pred             eccCcccccC---CCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC-EEEEEecCCCeEEEEEeCCceec
Q psy3337         229 LANPLAQNKR---GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       229 ~~~~~~~~g~---~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .... ...++   ..+.|.++|+.+.+.+..+.......++.|+|||+ ++++....++.|.++|+.+++.+
T Consensus       336 a~~~-~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          336 LVDQ-RDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEE-CCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             Eecc-cccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence            3210 00000   13579999999999999988766689999999999 88888843899999999998865

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.50  E-value=1.2e-12  Score=120.44  Aligned_cols=176  Identities=13%  Similarity=-0.003  Sum_probs=121.4

Q ss_pred             CceEEE-Eee--C-CCeEEEEecC-----CCCcEEEEEEecCCCEEEEEcCC----------CcEEEEeCCC------Ce
Q psy3337          96 EKNLRF-GFK--T-FDSVQTVFAG-----SESLQRVVRLSRNGDLMVTGGTD----------GHLRLWSFPK------MK  150 (297)
Q Consensus        96 d~~i~~-~~~--~-~~~~~~~~~~-----h~~~v~~~~~s~~g~~l~s~~~d----------~~i~iwd~~~------~~  150 (297)
                      +..|++ +..  . +. ...+. .     |...+..++|+|||+.|++++.+          ..|++||+.+      ++
T Consensus       101 ~~~l~~~~~~~~g~~~-~~~l~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAV-PRPLT-PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             TCCEEEECTTSTTCCC-CEECS-CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred             CCeEEEEcCCCCCCCC-CEecc-CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence            556666 554  2 43 44444 4     67788999999999999988876          5899999987      54


Q ss_pred             eeEEec-cccCCeeEEEEccCCCEEEEEeCC--------CcEEEEEcC-CCc--eeeeee-ccCCCCceEEEEeeeeeee
Q psy3337         151 PLLHIE-AHSKEIDDVDFSISGEQIVSIAKD--------GKAFVWNSK-NGS--LSKELK-WNTPDNIKYLFKRCRYGLV  217 (297)
Q Consensus       151 ~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~d--------~~v~lwd~~-~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~  217 (297)
                      . ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++.  ....+. .+.          ..+..+
T Consensus       179 ~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~----------~~~~~~  247 (662)
T 3azo_A          179 V-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE----------EAIAQA  247 (662)
T ss_dssp             S-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT----------BCEEEE
T ss_pred             e-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC----------ceEcce
Confidence            4 4555 566788899999999999987754        379999998 562  222222 211          123347


Q ss_pred             eeCCCCeEEEEeccCcccccCCCC--eEEEEeCCCCceEEEeccCCC---------eEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         218 EDSPKRSRLFTLANPLAQNKRGIS--YVQQWDVDSGRLRLAREMKES---------LSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       218 ~~s~~~~~l~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~---------v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                      .|+|||+.+++..        .++  .|++||+.+++.......+..         +..++|+|++++++++..  +.++
T Consensus       248 ~~spdg~l~~~~~--------~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~--~~~~  317 (662)
T 3azo_A          248 EWAPDGSLIVATD--------RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK--GAAV  317 (662)
T ss_dssp             EECTTSCEEEEEC--------TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS--SSCE
T ss_pred             EECCCCeEEEEEC--------CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc--CccE
Confidence            7999999555533        355  788888877776655444322         457889999998888774  7777


Q ss_pred             EE--EeCCce
Q psy3337         287 VY--IAFSLQ  294 (297)
Q Consensus       287 vw--d~~~~~  294 (297)
                      ||  |+.+++
T Consensus       318 l~~~d~~~~~  327 (662)
T 3azo_A          318 LGILDPESGE  327 (662)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCc
Confidence            77  655443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=9.5e-12  Score=102.89  Aligned_cols=172  Identities=12%  Similarity=-0.005  Sum_probs=120.5

Q ss_pred             EEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      +..+. .+.....+++|+|+|+ +++++..++.|..||..++  ...+..+...+.+++++|+++++++...++.|.+||
T Consensus        20 ~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           20 ARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             EEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            44454 5566678999999998 7888888999999998876  566666777899999999999888777778999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc----Cc-----ccccCCCCeEEEEeCCCCceEEEec
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN----PL-----AQNKRGISYVQQWDVDSGRLRLARE  258 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----~~-----~~~g~~d~~i~~wd~~~~~~~~~~~  258 (297)
                      ..+++..........      ........++++|+|..+++...    ..     .......+.|..++.. ++......
T Consensus        97 ~~~g~~~~~~~~~~~------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (296)
T 3e5z_A           97 EPGGEWESIADSFEG------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR  169 (296)
T ss_dssp             STTCCEEEEECEETT------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC
T ss_pred             CCCCcEEEEeeccCC------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec
Confidence            988765433221110      01112345788999987776321    00     0000013467777766 55544443


Q ss_pred             cCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         259 MKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       259 ~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      ....+..++|+|||+.|++.+. ++.|++|++.
T Consensus       170 ~~~~~~gi~~s~dg~~lv~~~~-~~~i~~~~~~  201 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLLVSDTG-DNATHRYCLN  201 (296)
T ss_dssp             CCSSEEEEEECTTSCEEEEETT-TTEEEEEEEC
T ss_pred             CCCCCccEEECCCCCEEEEeCC-CCeEEEEEEC
Confidence            3344899999999999977777 8999999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.49  E-value=1e-11  Score=104.41  Aligned_cols=180  Identities=14%  Similarity=0.094  Sum_probs=123.0

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC----CcEEEEeCCCCeeeEEec--cccCCeeE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD----GHLRLWSFPKMKPLLHIE--AHSKEIDD  164 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v~~  164 (297)
                      ++..++.|.+ +..+++...... .+...+.+++|+|+|+++++...+    +.|.+||..++.....+.  .+...+.+
T Consensus        61 ~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  139 (333)
T 2dg1_A           61 LDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD  139 (333)
T ss_dssp             EETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred             EECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence            4556677887 777777655444 566789999999999988877666    689999988776543332  23457899


Q ss_pred             EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         165 VDFSISGEQIVSIAK------DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~------d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ++++|+++++++...      .+.|..||..+++... +...          ......++|+|+++.++.+.       +
T Consensus       140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~----------~~~~~~i~~~~dg~~l~v~~-------~  201 (333)
T 2dg1_A          140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN----------ISVANGIALSTDEKVLWVTE-------T  201 (333)
T ss_dssp             EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE----------ESSEEEEEECTTSSEEEEEE-------G
T ss_pred             eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC----------CCcccceEECCCCCEEEEEe-------C
Confidence            999999988877654      2456666655444322 2111          01123478999998766543       2


Q ss_pred             CCCeEEEEeCCC-CceEEE--------eccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         239 GISYVQQWDVDS-GRLRLA--------REMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       239 ~d~~i~~wd~~~-~~~~~~--------~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .++.|.+||+.+ +..+..        +..+..+..++++++|+++++... ++.|.+||..
T Consensus       202 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-~~~v~~~d~~  262 (333)
T 2dg1_A          202 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-QGRVLVFNKR  262 (333)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-TTEEEEECTT
T ss_pred             CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-CCEEEEECCC
Confidence            367999999964 433221        122234889999999998888777 8999999974

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.49  E-value=1.1e-13  Score=118.80  Aligned_cols=182  Identities=12%  Similarity=-0.008  Sum_probs=120.8

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeE----------
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD----------  164 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~----------  164 (297)
                      +..|++ ++.+++...... ++......+.|+|||++|+.++.++.|++||+.+++....+..+......          
T Consensus        59 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  137 (396)
T 3c5m_A           59 NRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT  137 (396)
T ss_dssp             SCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred             CceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC
Confidence            346777 777776543332 33332334789999999999999999999999888765555434332222          


Q ss_pred             ---------EEEccCCCEEEEE-----eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC-CCeEEEEe
Q psy3337         165 ---------VDFSISGEQIVSI-----AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP-KRSRLFTL  229 (297)
Q Consensus       165 ---------~~~sp~~~~l~s~-----~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~  229 (297)
                               +.|+|+++.++..     ..+..|++||+.+++...... +.          ..+..+.|+| ++..|+.+
T Consensus       138 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~----------~~~~~~~~sp~dg~~l~~~  206 (396)
T 3c5m_A          138 KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DT----------AWLGHPIYRPFDDSTVGFC  206 (396)
T ss_dssp             EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ES----------SCEEEEEEETTEEEEEEEE
T ss_pred             ccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CC----------cccccceECCCCCCEEEEE
Confidence                     3567777766544     356789999998876544332 11          1233477899 78877776


Q ss_pred             ccCcccccCCC---CeEEEEeCCCCceEEEeccC-C-CeEEEEEcCCCCEEEEEecCC-----CeEEEEEeCCcee
Q psy3337         230 ANPLAQNKRGI---SYVQQWDVDSGRLRLAREMK-E-SLSALAVRDDGRFVAVGTMFT-----GSVFVYIAFSLQM  295 (297)
Q Consensus       230 ~~~~~~~g~~d---~~i~~wd~~~~~~~~~~~~~-~-~v~~~~~s~dg~~l~~~~~~d-----g~i~vwd~~~~~~  295 (297)
                      ..     +..+   ..|++||+..++........ . .+..++|+|||++|+.++. +     +.|++||+.+++.
T Consensus       207 ~~-----~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          207 HE-----GPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSY-FKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EC-----SCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEE-ETTTCCEEEEEECTTTCCE
T ss_pred             ec-----CCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEec-CCCCccceEEEEECCCCCe
Confidence            53     2211   57999999876654444422 2 2888999999998877765 4     4599999987753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=1.8e-11  Score=100.34  Aligned_cols=163  Identities=12%  Similarity=0.076  Sum_probs=123.8

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC-CCcEEEEeCCCCeeeEEec------cccCCeeEEE
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT-DGHLRLWSFPKMKPLLHIE------AHSKEIDDVD  166 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~  166 (297)
                      .++.|+. +. +|+.+..+..+....+.++.+.|+|+++++.+. ++.|..+|. +++.+..+.      .+......++
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence            3556766 77 899888887333457889999999999999877 778888885 677766654      2223456678


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         167 FSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       167 ~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      +.++|+++++...++.|.+||.. |+.+.++......           ..+...+++..+++..        .++.|..+
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~-----------~~~~~~~~g~~~v~~~--------~~~~v~~~  191 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTP-----------FSSAFLDNGDCLVACG--------DAHCFVQL  191 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCC-----------CEEEECTTSCEEEECB--------TTSEEEEE
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCc-----------cceeEcCCCCEEEEeC--------CCCeEEEE
Confidence            89999999999999999999987 9988888654211           1144578898888744        37789999


Q ss_pred             eCCCCceEEEeccCC------C-eEEEEEcCCCCEEEEEe
Q psy3337         247 DVDSGRLRLAREMKE------S-LSALAVRDDGRFVAVGT  279 (297)
Q Consensus       247 d~~~~~~~~~~~~~~------~-v~~~~~s~dg~~l~~~~  279 (297)
                      |..+|+.+..+....      . +.++...++|..+++..
T Consensus       192 d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          192 NLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             eCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            999999988875321      1 78899999999988875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.47  E-value=4.2e-13  Score=115.23  Aligned_cols=189  Identities=9%  Similarity=-0.007  Sum_probs=122.8

Q ss_pred             EEeeCCCeEEEEecCCCCc-----EEEEEEecCCCEEEEEcCC---CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337         101 FGFKTFDSVQTVFAGSESL-----QRVVRLSRNGDLMVTGGTD---GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus       101 ~~~~~~~~~~~~~~~h~~~-----v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ++..++..+..+. .+...     +..++|+|||++|+.....   ..|.+||+.+++.......+......+.|+||++
T Consensus        15 ~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           15 VDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             ECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             ecCCCCcceEEEe-cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            3667777777665 44332     6688999999998776443   4688899988876544333332333488999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeccCC---CCceEEEEee------eeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTP---DNIKYLFKRC------RYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      +|+.++.++.|++||+.+++.......+..   .+..+.+...      ....+.++|+++.++....   ..+..+..|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~---~~~~~~~~l  170 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF---YHTNPTCRL  170 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH---HHTCCCEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee---ccCCCcceE
Confidence            999999999999999988876544443321   1000000000      0001356777776654320   001347799


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcC-CCCEEEEEecCC------CeEEEEEeCCce
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRD-DGRFVAVGTMFT------GSVFVYIAFSLQ  294 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~~d------g~i~vwd~~~~~  294 (297)
                      ++||+.+++..........+..+.|+| ++..|+..+. +      ..|.+||+.+++
T Consensus       171 ~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~  227 (396)
T 3c5m_A          171 IKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSN  227 (396)
T ss_dssp             EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCC
T ss_pred             EEEECCCCcEEeeccCCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCc
Confidence            999999888766665555599999999 8887776654 3      368889886653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.47  E-value=2e-11  Score=102.70  Aligned_cols=186  Identities=8%  Similarity=-0.001  Sum_probs=132.0

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc-----CCeeEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS-----KEIDDV  165 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~  165 (297)
                      +...++.|.+ |..+++.+.++. . ......++++++++.+++...++.|.+||..+++....+....     .....+
T Consensus        59 ~~~~~~~v~viD~~t~~~~~~i~-~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i  136 (328)
T 3dsm_A           59 VVNNSHVIFAIDINTFKEVGRIT-G-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQM  136 (328)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEE-C-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCE
T ss_pred             EEcCCCEEEEEECcccEEEEEcC-C-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceE
Confidence            4445678888 999999988885 3 3456899999999655555589999999999998777665332     145677


Q ss_pred             EEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc--ccccCCCC
Q psy3337         166 DFSISGEQIVSIA--KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL--AQNKRGIS  241 (297)
Q Consensus       166 ~~sp~~~~l~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~--~~~g~~d~  241 (297)
                      ++ .+ ..|+.+.  .++.|.+||+.+++.+..+....           ....+.++|+|+.+++.....  ..-....+
T Consensus       137 ~~-~~-~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-----------~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~  203 (328)
T 3dsm_A          137 VQ-YG-KYVYVNCWSYQNRILKIDTETDKVVDELTIGI-----------QPTSLVMDKYNKMWTITDGGYEGSPYGYEAP  203 (328)
T ss_dssp             EE-ET-TEEEEEECTTCCEEEEEETTTTEEEEEEECSS-----------CBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred             EE-EC-CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-----------CccceEEcCCCCEEEEECCCccCCccccCCc
Confidence            77 34 4455444  48899999999998877665321           012367799998666643200  00000127


Q ss_pred             eEEEEeCCCCceEEEeccC--CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         242 YVQQWDVDSGRLRLAREMK--ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .|.+||..+++....+...  ..+..++|+|++++|+++.  . .|.+||+.+++.
T Consensus       204 ~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--~-~v~~~d~~t~~~  256 (328)
T 3dsm_A          204 SLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--N-DIWRMPVEADRV  256 (328)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES--S-SEEEEETTCSSC
T ss_pred             eEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc--c-EEEEEECCCCce
Confidence            8999999999888776543  2489999999999998865  3 899999988764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.45  E-value=3.1e-11  Score=99.21  Aligned_cols=179  Identities=11%  Similarity=0.108  Sum_probs=125.8

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEec-----CCCCcEEEEEEe-cCCCEEEEEcC-CCcEEEEeCCCCeeeEEecc-ccCCe
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFA-----GSESLQRVVRLS-RNGDLMVTGGT-DGHLRLWSFPKMKPLLHIEA-HSKEI  162 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~-----~h~~~v~~~~~s-~~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~-~~~~v  162 (297)
                      +...++.|.+ +.. ++.+..+..     ++...+..++++ ++++++++... ++.|.+|| .+++.+..+.. +...+
T Consensus        46 ~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~  123 (286)
T 1q7f_A           46 ADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHP  123 (286)
T ss_dssp             EEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCE
T ss_pred             EECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCc
Confidence            4445667777 544 666555531     244578899995 67776666643 88999999 56776666642 34578


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      .+++++|+++++++...++.|.+||. .++.+..+......        .....++++|++..+++...        ++.
T Consensus       124 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~--------~~p~~i~~~~~g~l~v~~~~--------~~~  186 (286)
T 1q7f_A          124 RGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL--------EFPNGVVVNDKQEIFISDNR--------AHC  186 (286)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTC--------SSEEEEEECSSSEEEEEEGG--------GTE
T ss_pred             eEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCcc--------CCcEEEEECCCCCEEEEECC--------CCE
Confidence            99999999998888778899999996 45555555321110        01234788999986666333        789


Q ss_pred             EEEEeCCCCceEEEeccC---CCeEEEEEcCCCCEEEEEecCCC-eEEEEEeC
Q psy3337         243 VQQWDVDSGRLRLAREMK---ESLSALAVRDDGRFVAVGTMFTG-SVFVYIAF  291 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~~dg-~i~vwd~~  291 (297)
                      |++||.. ++.+..+...   ..+..++++++|+++++... ++ .|.+||..
T Consensus       187 i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-~~~~i~~~~~~  237 (286)
T 1q7f_A          187 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH-NNFNLTIFTQD  237 (286)
T ss_dssp             EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS-SSCEEEEECTT
T ss_pred             EEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC-CCEEEEEECCC
Confidence            9999985 6666666544   34899999999998888877 76 99999954

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.43  E-value=1.3e-11  Score=104.12  Aligned_cols=163  Identities=11%  Similarity=0.201  Sum_probs=108.7

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---C--cEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---G--HLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      .+..|++ ++.+++.. .+     ..+..++|||||++|+..+.+   +  .|.+||+.+++....... .. +..++|+
T Consensus        41 ~~~~l~~~d~~~~~~~-~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~ws  112 (347)
T 2gop_A           41 YENTIVIENLKNNARR-FI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWN  112 (347)
T ss_dssp             EEEEEEEEETTTCCEE-EE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEEC
T ss_pred             ccceEEEEeCCCCceE-Ec-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeEC
Confidence            3567777 77777643 23     357789999999999887654   2  488889888776554443 33 9999999


Q ss_pred             cCCCEEEEEeCC---------------------------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC
Q psy3337         169 ISGEQIVSIAKD---------------------------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP  221 (297)
Q Consensus       169 p~~~~l~s~~~d---------------------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  221 (297)
                      ||++.|+.++.+                           ..|++||+.+++.+..+...            .+..+.|+|
T Consensus       113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~------------~~~~~~~sp  180 (347)
T 2gop_A          113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP------------RFSSGIWHR  180 (347)
T ss_dssp             TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE------------TTCEEEEET
T ss_pred             CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC------------CcccccCCC
Confidence            999988887632                           56889999887663444321            233467899


Q ss_pred             CCeEEEEeccCcccccC-----C-CCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC--------CeEEE
Q psy3337         222 KRSRLFTLANPLAQNKR-----G-ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT--------GSVFV  287 (297)
Q Consensus       222 ~~~~l~~~~~~~~~~g~-----~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d--------g~i~v  287 (297)
                      +| .+++...     ..     . ...|+++|  +++....... ..+..+  +|||++|+.++. +        ..|.+
T Consensus       181 dg-~~~~~~~-----~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~-~~~~~~~~~~~l~~  248 (347)
T 2gop_A          181 DK-IVVNVPH-----REIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGK-PEKKYMSEHNKLYI  248 (347)
T ss_dssp             TE-EEEEEEC-----CCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEEC-CSSSCCCSSCEEEE
T ss_pred             Ce-EEEEEec-----ccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEc-cccCCccccceEEE
Confidence            99 6665432     11     1 23566666  5554443333 335544  999999887775 4        36888


Q ss_pred             EE
Q psy3337         288 YI  289 (297)
Q Consensus       288 wd  289 (297)
                      ||
T Consensus       249 ~d  250 (347)
T 2gop_A          249 YD  250 (347)
T ss_dssp             EC
T ss_pred             EC
Confidence            87

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.43  E-value=6.6e-12  Score=116.53  Aligned_cols=167  Identities=12%  Similarity=0.059  Sum_probs=113.3

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCC-----cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCc-------
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDG-----HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK-------  182 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~-------  182 (297)
                      +|...+..++|||||++|+.+..++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445688999999999998765433     8999999999876533322 23678999999999999888766       


Q ss_pred             ---------EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC-CCeEEEEeCCC--
Q psy3337         183 ---------AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG-ISYVQQWDVDS--  250 (297)
Q Consensus       183 ---------v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~-d~~i~~wd~~~--  250 (297)
                               |++|++.+++....+....+....+.      ..+.|+|||++|+....    .+.. +..|++||+.+  
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~------~~~~~SpDg~~l~~~~~----~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM------GGAELSDDGRYVLLSIR----EGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE------EEEEECTTSCEEEEEEE----CSSSSCCEEEEEEGGGSS
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEE------EEEEEcCCCCEEEEEEE----ccCCCccEEEEEECcccc
Confidence                     99999987763212211111110111      23678999999888653    1222 67899999986  


Q ss_pred             ----Cc-eEEEeccCCC-eEEEEEcCCCCEEEEEecCC---CeEEEEEeCCc
Q psy3337         251 ----GR-LRLAREMKES-LSALAVRDDGRFVAVGTMFT---GSVFVYIAFSL  293 (297)
Q Consensus       251 ----~~-~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~d---g~i~vwd~~~~  293 (297)
                          +. ....+..+.. +.. .|+|+|..|+..+..+   +.|.+||+.++
T Consensus       271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             SSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             cccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence                42 3444444433 444 5889999887766512   36999998875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.42  E-value=2.4e-11  Score=102.26  Aligned_cols=189  Identities=10%  Similarity=0.042  Sum_probs=132.1

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEec-----CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFA-----GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  165 (297)
                      -++.+++|.+ |..+++....+..     ........+.+. +++.+++...++.|.+||..+++.+.++. .......+
T Consensus        12 ~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           12 FQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             TTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred             CCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence            3556889999 9999887665421     122345677774 45566666778999999999999888885 34578899


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +++++++.+++...++.|.+||+.+++....+......+..     .....+++  ++..++.+..      ..++.|.+
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~-----~~p~~i~~--~~~~lyv~~~------~~~~~v~v  156 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMES-----GSTEQMVQ--YGKYVYVNCW------SYQNRILK  156 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTT-----CBCCCEEE--ETTEEEEEEC------TTCCEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccC-----CCcceEEE--ECCEEEEEcC------CCCCEEEE
Confidence            99999855445448899999999998877666532200000     00011344  3344444321      13789999


Q ss_pred             EeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC----------CeEEEEEeCCceec
Q psy3337         246 WDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT----------GSVFVYIAFSLQMC  296 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d----------g~i~vwd~~~~~~~  296 (297)
                      ||+.+++.+..+........+.++|+|++++++.. +          +.|.+||..+++.+
T Consensus       157 iD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~-~~~~~~~~~~~~~v~~id~~t~~v~  216 (328)
T 3dsm_A          157 IDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDG-GYEGSPYGYEAPSLYRIDAETFTVE  216 (328)
T ss_dssp             EETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCC-BCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred             EECCCCeEEEEEEcCCCccceEEcCCCCEEEEECC-CccCCccccCCceEEEEECCCCeEE
Confidence            99999998888876555788999999997777765 5          78999999887653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.42  E-value=1.6e-11  Score=113.93  Aligned_cols=185  Identities=10%  Similarity=0.018  Sum_probs=125.9

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCc----------------EEEEeCCCCee----
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGH----------------LRLWSFPKMKP----  151 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~----------------i~iwd~~~~~~----  151 (297)
                      ++...+|++ ++.+++.+.... .+. .+..++|+|||+.|+.++.++.                |++|++.++..    
T Consensus       147 G~~~~~i~v~d~~tg~~~~~~~-~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~  224 (710)
T 2xdw_A          147 GSDWVTIKFMKVDGAKELPDVL-ERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL  224 (710)
T ss_dssp             TCSCEEEEEEETTTTEEEEEEE-EEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE
T ss_pred             CCceEEEEEEECCCCCCCcccc-cCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE
Confidence            333448999 999988776443 222 2568999999999999888766                99999987652    


Q ss_pred             eEEeccccCCeeEEEEccCCCEEEEEeC-----CCcEEEEEcCC------Cc-eeeeeeccCCCCceEEEEeeeeeeeee
Q psy3337         152 LLHIEAHSKEIDDVDFSISGEQIVSIAK-----DGKAFVWNSKN------GS-LSKELKWNTPDNIKYLFKRCRYGLVED  219 (297)
Q Consensus       152 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~-----d~~v~lwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (297)
                      +.....|...+..+.|+|||++|+..+.     +..|++||+.+      +. ....+..+....  .         ..|
T Consensus       225 v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~--~---------~~~  293 (710)
T 2xdw_A          225 CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE--Y---------DYV  293 (710)
T ss_dssp             EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC--E---------EEE
T ss_pred             EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE--E---------EEE
Confidence            2222334556889999999999887764     56899999976      43 344444332111  0         125


Q ss_pred             CCCCeEEEEeccCcccccCCCCeEEEEeCCCCc---eEEEeccCC--CeEEEEEcCCCCEEEEEecCCCe--EEEEEeCC
Q psy3337         220 SPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR---LRLAREMKE--SLSALAVRDDGRFVAVGTMFTGS--VFVYIAFS  292 (297)
Q Consensus       220 s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~---~~~~~~~~~--~v~~~~~s~dg~~l~~~~~~dg~--i~vwd~~~  292 (297)
                      +|+|..|+..+.    .+.....|.+||+.++.   ....+....  .+..++|++++.++++... ++.  |++||+.+
T Consensus       294 s~dg~~l~~~s~----~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~  368 (710)
T 2xdw_A          294 TNEGTVFTFKTN----RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLAT  368 (710)
T ss_dssp             EEETTEEEEEEC----TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTT
T ss_pred             eccCCEEEEEEC----CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCC
Confidence            788888877654    12235689999998764   233344434  3888999988888888888 874  56677756


Q ss_pred             cee
Q psy3337         293 LQM  295 (297)
Q Consensus       293 ~~~  295 (297)
                      ++.
T Consensus       369 g~~  371 (710)
T 2xdw_A          369 GAL  371 (710)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.41  E-value=1.5e-11  Score=103.84  Aligned_cols=171  Identities=8%  Similarity=0.082  Sum_probs=113.0

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCC---------------------------CcEEEEeCCCC
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD---------------------------GHLRLWSFPKM  149 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---------------------------~~i~iwd~~~~  149 (297)
                      .|++ ++.+++...... .+ . +..++|+|||+.|+.++.+                           ..|++||+.++
T Consensus        86 ~l~~~~~~~g~~~~l~~-~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           86 EIWVADLETLSSKKILE-AK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEETTTTEEEEEEE-ES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             eEEEEECCCCceEEEEc-CC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            4666 777776555443 33 3 8999999999988887632                           57999999888


Q ss_pred             eeeEEeccccCCeeEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC
Q psy3337         150 KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG-------KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK  222 (297)
Q Consensus       150 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~-------~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  222 (297)
                      +.+..+.. . .+..+.|+|++ +++++..+.       ...||.+.+++. ..+..+           ..+  ..++|+
T Consensus       163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-----------~~~--~~~spd  225 (347)
T 2gop_A          163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-----------VSF--YAVDSD  225 (347)
T ss_dssp             EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-----------ESE--EEEEEC
T ss_pred             eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-----------cce--eeECCC
Confidence            76455554 3 78899999999 777776542       344554434432 333211           111  123899


Q ss_pred             CeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEE-EEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         223 RSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSA-LAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       223 ~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~-~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |+.|+..+............|++||  +++.......+.. +.. +.|+ || ++++++. ++.++|| +.+++
T Consensus       226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~-~~~~~l~-~~~g~  293 (347)
T 2gop_A          226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFE-EGSVNLY-IWDGE  293 (347)
T ss_dssp             SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEE-TTEEEEE-EESSS
T ss_pred             CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEec-CCcEEEE-EcCCc
Confidence            9988876541000001235799999  6666555555544 776 9999 88 8888888 9999999 86544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.41  E-value=6.1e-11  Score=97.99  Aligned_cols=178  Identities=13%  Similarity=-0.000  Sum_probs=118.8

Q ss_pred             CCCCceEEE-EeeCCCeEEEEe--cC-CCCcEEEEEEecCCCEEEE----Ec-------------CCCcEEEEeCCCCee
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVF--AG-SESLQRVVRLSRNGDLMVT----GG-------------TDGHLRLWSFPKMKP  151 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~--~~-h~~~v~~~~~s~~g~~l~s----~~-------------~d~~i~iwd~~~~~~  151 (297)
                      ...++.|.+ +..+++......  .+ ....+..++++|+|+++++    |.             ..+.|..++.. ++ 
T Consensus        86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-  163 (296)
T 3e5z_A           86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-  163 (296)
T ss_dssp             ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-
T ss_pred             ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-
Confidence            334456766 776777543322  01 1224567999999998887    33             13456666654 44 


Q ss_pred             eEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC-CCce---eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEE
Q psy3337         152 LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK-NGSL---SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF  227 (297)
Q Consensus       152 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  227 (297)
                      +..+..+......++|+|+++.|++.+.++.|.+||+. ++..   ...+..+.          .....++++++|..++
T Consensus       164 ~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          164 LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP----------GKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS----------SCCCSEEEBTTSCEEE
T ss_pred             EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC----------CCCCeEEECCCCCEEE
Confidence            34445566678999999999988777778999999987 4543   22221110          0112377899998665


Q ss_pred             EeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEE-cCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         228 TLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAV-RDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       228 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~-s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +.          ++.|.+||.. ++.+..+..+..+.+++| +|+++.|++++. + .+..++..+.+.
T Consensus       234 ~~----------~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~-~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          234 SA----------GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVS-T-EFWSIETNVRGL  289 (296)
T ss_dssp             EE----------TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEET-T-EEEEEECSCCBC
T ss_pred             Ec----------CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcC-C-eEEEEEcccccc
Confidence            52          5789999987 777777776555889999 689999999986 5 566667766543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.41  E-value=2.7e-11  Score=103.03  Aligned_cols=198  Identities=10%  Similarity=0.025  Sum_probs=132.3

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc----------CCCcEEEEeCCCCeeeEEeccc------
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG----------TDGHLRLWSFPKMKPLLHIEAH------  158 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~------  158 (297)
                      ++.|.+ |..+++.+.++..+.. + . ++++|||++++.+.          .++.|.+||..+++.+..+.-.      
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~  134 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL  134 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence            678888 9999999988884544 3 3 99999999887765          3678999999999988877432      


Q ss_pred             -cCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeccC----------------CCCceEEEEee---e---
Q psy3337         159 -SKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLSKELKWNT----------------PDNIKYLFKRC---R---  213 (297)
Q Consensus       159 -~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~---~---  213 (297)
                       ......+.|+|||++++++..  ++.|.++|+.+++.+.++....                +++....+...   .   
T Consensus       135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence             124668999999999888864  6899999999988776664211                11111111000   0   


Q ss_pred             -----e--------eeeee-CCCCeEEEEeccC-----------------------------------------------
Q psy3337         214 -----Y--------GLVED-SPKRSRLFTLANP-----------------------------------------------  232 (297)
Q Consensus       214 -----~--------~~~~~-s~~~~~l~~~~~~-----------------------------------------------  232 (297)
                           +        ...+| .++|++++.....                                               
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence                 0        00122 1344332211110                                               


Q ss_pred             ccccc-----C---CCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC-EEEEEecCCCeEEEEEeCCceec
Q psy3337         233 LAQNK-----R---GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       233 ~~~~g-----~---~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++...     +   ....|.++|+.+++.+..+.....+.++.+++|++ +|++....++.|.++|..+++.+
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            00000     0   12468888888888888887766688999999997 66665543899999999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=2.2e-11  Score=103.87  Aligned_cols=133  Identities=13%  Similarity=0.118  Sum_probs=103.2

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK  195 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~  195 (297)
                      +.. |+.++|  |+++|+++ .++.|++||+.+.........|...+.++.+.+.  .+++++.||.|.+||+.++....
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence            445 899999  89999999 8899999999877666666677888988887765  38888999999999998776542


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce--EEEe------c---cCCC-e
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL--RLAR------E---MKES-L  263 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~------~---~~~~-v  263 (297)
                       +             ...+.+++|+|+|  ++.        |..|+.+++|+...+++  ...+      .   .+.. |
T Consensus       161 -~-------------~~~Vs~v~WSpkG--~~v--------g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V  216 (388)
T 1xip_A          161 -L-------------AQNVTSFDVTNSQ--LAV--------LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSP  216 (388)
T ss_dssp             -E-------------EESEEEEEECSSE--EEE--------EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEE
T ss_pred             -c-------------cCCceEEEEcCCc--eEE--------EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeE
Confidence             1             1234568999999  344        34489999999987775  5555      2   2334 9


Q ss_pred             EEEEEcCCCCEEEEE
Q psy3337         264 SALAVRDDGRFVAVG  278 (297)
Q Consensus       264 ~~~~~s~dg~~l~~~  278 (297)
                      .+++|.+++.++++=
T Consensus       217 ~sI~wl~~~~flv~y  231 (388)
T 1xip_A          217 LSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEESSSSEEEEEE
T ss_pred             EEEEEecCCeEEEEE
Confidence            999999999998863

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=9.4e-12  Score=115.23  Aligned_cols=166  Identities=8%  Similarity=-0.079  Sum_probs=109.5

Q ss_pred             CCCCcEEEEEEecCCCEEE-----EEcCCCcEEEEeCCCCeeeEEeccccCCe--eEEEEccCCCEEEEEeCCCc-----
Q psy3337         115 GSESLQRVVRLSRNGDLMV-----TGGTDGHLRLWSFPKMKPLLHIEAHSKEI--DDVDFSISGEQIVSIAKDGK-----  182 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~-----s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~s~~~d~~-----  182 (297)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4555789999999999998     44456789999999988641  1122222  68999999999999988776     


Q ss_pred             --------EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC-CCCeEEEEeCCCCce
Q psy3337         183 --------AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR-GISYVQQWDVDSGRL  253 (297)
Q Consensus       183 --------v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~-~d~~i~~wd~~~~~~  253 (297)
                              |++|++.++.....+....+.....      +..+.|+|||++|+....     .. ....|++|+..+++.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~------~~~~~~SpDG~~l~~~~~-----~~~~~~~l~~~~~~~~~~  264 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT------FLQSDLSRDGKYLFVYIL-----RGWSENDVYWKRPGEKDF  264 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC------EEEEEECTTSCCEEEEEE-----ETTTEEEEEEECTTCSSC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEE------EEEEEECCCCCEEEEEEe-----CCCCceEEEEEcCCCCce
Confidence                    9999998776321111111111011      224678999999888654     11 234788888776665


Q ss_pred             EEEeccCCCeEEEEEcCCCCEEEEEec--CCCeEEEEEeCCce
Q psy3337         254 RLAREMKESLSALAVRDDGRFVAVGTM--FTGSVFVYIAFSLQ  294 (297)
Q Consensus       254 ~~~~~~~~~v~~~~~s~dg~~l~~~~~--~dg~i~vwd~~~~~  294 (297)
                      .........+....+ ++|.+++.+..  .++.|.+||+.+++
T Consensus       265 ~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          265 RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            544444444666666 66664444432  15789999987754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=2.3e-11  Score=103.43  Aligned_cols=189  Identities=10%  Similarity=-0.021  Sum_probs=130.8

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc----------CCCcEEEEeCCCCeeeEEeccc-------c
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG----------TDGHLRLWSFPKMKPLLHIEAH-------S  159 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------~  159 (297)
                      ++.+ |..+++.+.++..+.. +  .+.++||+++++.+.          .++.|.+||+.+++.+.++...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            7778 9999999999985654 4  799999999888775          3688999999999998888643       1


Q ss_pred             CCeeEEEEccCCCEEEEEeC--CCcEEE--EEcCCCceeeeeecc----------------CCC----------------
Q psy3337         160 KEIDDVDFSISGEQIVSIAK--DGKAFV--WNSKNGSLSKELKWN----------------TPD----------------  203 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~--d~~v~l--wd~~~~~~~~~~~~~----------------~~~----------------  203 (297)
                      .....++|+|||++++++..  +..+.+  +|+.+   +..+...                .++                
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~  200 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence            34678999999999998864  456888  88754   1111000                000                


Q ss_pred             ---------------------CceEE---------EEe-------------------------eeeeeeeeCCCCeEEEE
Q psy3337         204 ---------------------NIKYL---------FKR-------------------------CRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       204 ---------------------~~~~~---------~~~-------------------------~~~~~~~~s~~~~~l~~  228 (297)
                                           ...+.         +..                         .....++++|+++.++.
T Consensus       201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                                 00000         000                         00011567888887776


Q ss_pred             eccC----cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCE-EEEEe-cCCCeEEEEEeCCceec
Q psy3337         229 LANP----LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRF-VAVGT-MFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       229 ~~~~----~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~-~~dg~i~vwd~~~~~~~  296 (297)
                      ...+    .+.  . ...+.++|+.+++.+..+........++|+|||++ +++.. . ++.|.++|+.+++.+
T Consensus       281 ~~~~~~~~~~~--~-~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~-~~~VsVID~~t~kvv  350 (368)
T 1mda_H          281 LTVEHSRSCLA--A-AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG-TEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EEEECSSCTTS--C-EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT-TTEEEEEESSSCEEE
T ss_pred             EeccccCcccc--c-CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC-CCeEEEEECCCCcEE
Confidence            4210    000  0 23456999999999998887767999999999985 45555 5 899999999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.30  E-value=4.6e-11  Score=101.93  Aligned_cols=144  Identities=10%  Similarity=0.080  Sum_probs=103.6

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-----------eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEE
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-----------PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN  187 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd  187 (297)
                      .+..+++++...++++|+.++ +.+|++.+..           +.... .+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            578999999999999999885 6669864322           11222 3556 999999  89999998 889999999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEE
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALA  267 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~  267 (297)
                      +++.........+.-.          +..+.+.+..  ++.+..        ||.|.+||+.++....   ....|++++
T Consensus       113 v~sl~~~~~~~~~~~~----------v~~i~~~~p~--~av~~~--------dG~L~v~dl~~~~~~~---~~~~Vs~v~  169 (388)
T 1xip_A          113 LEELSEFRTVTSFEKP----------VFQLKNVNNT--LVILNS--------VNDLSALDLRTKSTKQ---LAQNVTSFD  169 (388)
T ss_dssp             SSSTTCEEEEEECSSC----------EEEEEECSSE--EEEEET--------TSEEEEEETTTCCEEE---EEESEEEEE
T ss_pred             chhhhccCccceeecc----------eeeEEecCCC--EEEEEC--------CCCEEEEEccCCcccc---ccCCceEEE
Confidence            9866544444333211          1122233322  666444        9999999999877654   223599999


Q ss_pred             EcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         268 VRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       268 ~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |||+|  ++.|.. ||.+++|+...++
T Consensus       170 WSpkG--~~vg~~-dg~i~~~~~~~~~  193 (388)
T 1xip_A          170 VTNSQ--LAVLLK-DRSFQSFAWRNGE  193 (388)
T ss_dssp             ECSSE--EEEEET-TSCEEEEEEETTE
T ss_pred             EcCCc--eEEEEc-CCcEEEEcCCCcc
Confidence            99999  678888 9999999887655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.29  E-value=4.7e-10  Score=91.12  Aligned_cols=180  Identities=9%  Similarity=-0.036  Sum_probs=116.7

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-cccCCeeEEEEcc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSI  169 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp  169 (297)
                      +...++.|.+ +..++... .+...+...+.+++++++|+++++.. ++.|.+||...... ..+. .....+.+++++|
T Consensus        41 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~  117 (270)
T 1rwi_B           41 SEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDT  117 (270)
T ss_dssp             ECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECT
T ss_pred             ccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECC
Confidence            3345566666 55443322 22113334577999999999776666 88999999875543 3332 2335689999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       170 ~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      +++++++...++.|.+|+..+...........          .....+++++++..+++...        ++.|.+||..
T Consensus       118 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~~  179 (270)
T 1rwi_B          118 QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL----------NDPDGVAVDNSGNVYVTDTD--------NNRVVKLEAE  179 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTCCSCEECCCCSC----------CSCCCEEECTTCCEEEEEGG--------GTEEEEECTT
T ss_pred             CCCEEEEECCCCEEEEEECCCceeEeeccccC----------CCceeEEEeCCCCEEEEECC--------CCEEEEEecC
Confidence            99988877778899999765443322111100          01223778999985555333        6799999998


Q ss_pred             CCceEEEeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         250 SGRLRLAREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       250 ~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ........... ..+.+++++++|.++++... ++.|.+||....
T Consensus       180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~-~~~v~~~~~~~~  223 (270)
T 1rwi_B          180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGST  223 (270)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCCEEEEETT-TSCEEEECTTCS
T ss_pred             CCceEeecccCCCCceEEEECCCCCEEEEECC-CCcEEEEcCCCC
Confidence            76654433333 34899999999977777777 889999998654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.27  E-value=3.5e-10  Score=104.72  Aligned_cols=179  Identities=11%  Similarity=0.019  Sum_probs=120.0

Q ss_pred             CCCCCceEEE-EeeCCCeE-EEEecCCCCcEEEEEEecCCCEEEEEcCCCc-------------EEEEeCCCCe----ee
Q psy3337          92 IDSKEKNLRF-GFKTFDSV-QTVFAGSESLQRVVRLSRNGDLMVTGGTDGH-------------LRLWSFPKMK----PL  152 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~-------------i~iwd~~~~~----~~  152 (297)
                      .++.+.+|++ ++.+++.+ .... .... ...++|+|||+.|+.++.|..             |++|++.++.    .+
T Consensus       142 ~G~~~~~i~v~dl~tg~~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv  219 (695)
T 2bkl_A          142 NAADEAVLHVIDVDSGEWSKVDVI-EGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV  219 (695)
T ss_dssp             TTCSCCEEEEEETTTCCBCSSCCB-SCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred             CCCceEEEEEEECCCCCCcCCccc-Cccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence            4666789999 99998865 2211 1111 158999999999999988776             9999998765    33


Q ss_pred             EEeccccCCeeEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEE
Q psy3337         153 LHIEAHSKEIDDVDFSISGEQIVSIAKDG----KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       153 ~~~~~~~~~v~~~~~sp~~~~l~s~~~d~----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  228 (297)
                      .....|...+..+.|+|||++|+.++.++    .|++||..++. ...+..+...  .        ....+ +++. ++.
T Consensus       220 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~--~--------~~~~~-~~g~-l~~  286 (695)
T 2bkl_A          220 HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGA--K--------YEVHA-WKDR-FYV  286 (695)
T ss_dssp             ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSC--C--------EEEEE-ETTE-EEE
T ss_pred             EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCc--e--------EEEEe-cCCc-EEE
Confidence            33344556789999999999998877665    67777665543 3333333211  0        01223 5666 555


Q ss_pred             eccCcccccCCCCeEEEEeCCCCce---EEEeccC-CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         229 LANPLAQNKRGISYVQQWDVDSGRL---RLAREMK-ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       229 ~~~~~~~~g~~d~~i~~wd~~~~~~---~~~~~~~-~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .+.    ....++.|.+||+.+++.   ...+..+ .. +..++|+ ++.++++... |+..+||.+.
T Consensus       287 ~s~----~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~  348 (695)
T 2bkl_A          287 LTD----EGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK-DATSEVRVAT  348 (695)
T ss_dssp             EEC----TTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE-TTEEEEEEEE
T ss_pred             EEC----CCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEe
Confidence            433    023468999999987653   4444443 33 8889998 7788888888 9988888654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.26  E-value=4.1e-10  Score=104.99  Aligned_cols=166  Identities=10%  Similarity=0.008  Sum_probs=106.6

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCC-----CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCc-------
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTD-----GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK-------  182 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~-------  182 (297)
                      +|...+..++|||||++|+.+..+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            344468899999999999876543     4699999999887543 112222468999999 98888876654       


Q ss_pred             -------EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc-CCCCeEEEEeCCCC--c
Q psy3337         183 -------AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK-RGISYVQQWDVDSG--R  252 (297)
Q Consensus       183 -------v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g-~~d~~i~~wd~~~~--~  252 (297)
                             |++|++.++.....+....+....+      +..+.|+|||++|+.....    + .....|++||+.++  +
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~------~~~~~~SpDG~~l~~~~~~----~~~~~~~l~~~d~~~~~~~  307 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKR------GHGASVSSDGRWVVITSSE----GTDPVNTVHVARVTNGKIG  307 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTC------EEEEEECTTSCEEEEEEEC----TTCSCCEEEEEEEETTEEC
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeE------EEEEEECCCCCEEEEEEEc----cCCCcceEEEEECCCCCCc
Confidence                   8899987765321221111111011      2246789999988876540    1 12458999999876  4


Q ss_pred             -eEEEeccCCCeEEEEEcCCCCEEEEEecC---CCeEEEEEeCCc
Q psy3337         253 -LRLAREMKESLSALAVRDDGRFVAVGTMF---TGSVFVYIAFSL  293 (297)
Q Consensus       253 -~~~~~~~~~~v~~~~~s~dg~~l~~~~~~---dg~i~vwd~~~~  293 (297)
                       ..........+... ++|+|..|+..+..   ++.|.+||+.++
T Consensus       308 ~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          308 PVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             ccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence             33333333334444 35899988887751   245999998774

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.25  E-value=4.8e-10  Score=95.55  Aligned_cols=142  Identities=13%  Similarity=0.121  Sum_probs=103.2

Q ss_pred             CCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeeccCCCCce
Q psy3337         137 TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------KDGKAFVWNSKNGSLSKELKWNTPDNIK  206 (297)
Q Consensus       137 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d~~v~lwd~~~~~~~~~~~~~~~~~~~  206 (297)
                      .|+.|.+||..+++.+..+..+..+  .++|+||+++++++.          .++.|.+||+.+++.+..+.......  
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~--  104 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV--  104 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC--
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc--
Confidence            4789999999999988888766554  899999999999886          36789999999888887775431000  


Q ss_pred             EEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE-eccCCCeEEEEEcCCC-CEEEEEecCCCe
Q psy3337         207 YLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA-REMKESLSALAVRDDG-RFVAVGTMFTGS  284 (297)
Q Consensus       207 ~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~dg-~~l~~~~~~dg~  284 (297)
                        ........++++|||++|+++..      ..++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+. ||.
T Consensus       105 --~~g~~p~~i~~spdg~~l~v~n~------~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~-dg~  174 (361)
T 2oiz_A          105 --QGLNYDGLFRQTTDGKFIVLQNA------SPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICG-DGG  174 (361)
T ss_dssp             --CBCCCGGGEEECTTSSEEEEEEE------SSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEET-TSS
T ss_pred             --ccCCCcceEEECCCCCEEEEECC------CCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECC-CCc
Confidence              00001123778999999998653      1257999999999998887 65433 2335667765 56667777 888


Q ss_pred             EEEEEeCC
Q psy3337         285 VFVYIAFS  292 (297)
Q Consensus       285 i~vwd~~~  292 (297)
                      +.+|++..
T Consensus       175 ~~~v~~~~  182 (361)
T 2oiz_A          175 LLTINLGE  182 (361)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEECC
Confidence            88888754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=2.3e-09  Score=92.88  Aligned_cols=184  Identities=5%  Similarity=-0.072  Sum_probs=112.9

Q ss_pred             eEEE-EeeCCCeEEEE---ecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEE----eccccCCe--eEEEE
Q psy3337          98 NLRF-GFKTFDSVQTV---FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH----IEAHSKEI--DDVDF  167 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~v--~~~~~  167 (297)
                      .|.+ +...+.....+   .......+.+++++|++..|+.+..++.|+.||..++.....    ..++...-  ..++|
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence            5555 66655543343   112445667899999554555577788999999987653222    22222222  39999


Q ss_pred             ccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeccC-CCCc-eEEE---EeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         168 SIS-GEQIVSIAKDGKAFVWNSKNGSLSKELKWNT-PDNI-KYLF---KRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       168 sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      +|+ +.++++-..++.|+.|+....  +..+.++. ..+. .-..   ....-..++++|+|..+++-.       ...+
T Consensus       275 ~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-------~~~~  345 (409)
T 3hrp_A          275 YFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-------FKGY  345 (409)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-------TTTC
T ss_pred             eCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-------CCCC
Confidence            995 556666667889999987533  33333221 0000 0000   001123588999998555532       0378


Q ss_pred             eEEEEeCCCCceEEEecc---------------CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         242 YVQQWDVDSGRLRLAREM---------------KESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~---------------~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .|+.|++.++........               -.....++++++|.++++-.. ++.|+.++++
T Consensus       346 ~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-n~~Ir~i~~e  409 (409)
T 3hrp_A          346 CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-GKAIRKYAVE  409 (409)
T ss_dssp             EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-TCEEEEEEEC
T ss_pred             EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC-CCeEEEEEeC
Confidence            999999877765433321               123899999999877777777 8999988763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.23  E-value=1.7e-08  Score=82.79  Aligned_cols=154  Identities=9%  Similarity=-0.023  Sum_probs=108.5

Q ss_pred             CCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE-EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL-HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~  194 (297)
                      ....+..++++++|+++++...++.|.+||. +++... .+..+...+..+++.++++++++...++.|..||. +++..
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            4557889999999998888878889999998 554332 23334557899999999988887777789999998 66543


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE-eccC-CCeEEEEEcCCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA-REMK-ESLSALAVRDDG  272 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~-~~v~~~~~s~dg  272 (297)
                      . +......  .      ....+++++++..+++..        ..+.|.+||. +++.... +... ..+.+++++++|
T Consensus       175 ~-~~~~~~~--~------~~~~i~~~~~g~l~v~~~--------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          175 E-FKIPTPA--S------GPVGITKGNDDALWFVEI--------IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             E-EECSSTT--C------CEEEEEECTTSSEEEEET--------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT
T ss_pred             E-eeCCCCC--C------cceeEEECCCCCEEEEcc--------CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC
Confidence            3 2111111  1      122477899988665533        3678999999 6664432 2222 349999999999


Q ss_pred             CEEEEEecCCCeEEEEEe
Q psy3337         273 RFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~  290 (297)
                      +..++... ++.|.+||.
T Consensus       237 ~l~v~~~~-~~~i~~~d~  253 (299)
T 2z2n_A          237 DLWFTEWG-ANKIGRLTS  253 (299)
T ss_dssp             CEEEEETT-TTEEEEEET
T ss_pred             CEEEeccC-CceEEEECC
Confidence            86666556 789999997

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.20  E-value=3.8e-09  Score=87.37  Aligned_cols=181  Identities=11%  Similarity=0.088  Sum_probs=114.5

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc----ccCCeeEEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA----HSKEIDDVD  166 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~  166 (297)
                      +...++.|.. +..+++. ..+  .....+.+++++|+|+++++.  ++.|.+||..+++.......    ....+.+++
T Consensus        30 ~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~  104 (297)
T 3g4e_A           30 VDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGK  104 (297)
T ss_dssp             EETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEE
T ss_pred             EECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEE
Confidence            3344556666 6666554 333  345678999999999955553  56799999987764332221    123578999


Q ss_pred             EccCCCEEEEEeCC---------CcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         167 FSISGEQIVSIAKD---------GKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       167 ~sp~~~~l~s~~~d---------~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      ++|+|+++++....         ..-.||.+.. ++... +...          ....+.++|+|+++.|+.+..     
T Consensus       105 ~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~----------~~~pngi~~spdg~~lyv~~~-----  168 (297)
T 3g4e_A          105 VDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQ----------VDISNGLDWSLDHKIFYYIDS-----  168 (297)
T ss_dssp             ECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEE----------ESBEEEEEECTTSCEEEEEEG-----
T ss_pred             ECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeec----------cccccceEEcCCCCEEEEecC-----
Confidence            99999977754321         2234554432 32221 1110          011235889999998776532     


Q ss_pred             cCCCCeEEEEeC--CCCceE-----EEeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDV--DSGRLR-----LAREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~--~~~~~~-----~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                        ..+.|.+||+  .++...     ..+... ..+..++++++|++.++... ++.|.+||..+++.+
T Consensus       169 --~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          169 --LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVTGKRL  233 (297)
T ss_dssp             --GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTTCCEE
T ss_pred             --CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCCceEE
Confidence              3678999987  445432     222222 23889999999988777777 889999999887754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.20  E-value=3.4e-09  Score=87.88  Aligned_cols=159  Identities=10%  Similarity=0.085  Sum_probs=106.6

Q ss_pred             CcEEEEEEecCCCEEEEEcCC---------------CcEEEEeCCCCeeeEEeccccCCeeEEEEc----cCCCEEEEE-
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTD---------------GHLRLWSFPKMKPLLHIEAHSKEIDDVDFS----ISGEQIVSI-  177 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~s~-  177 (297)
                      ..+.+++++++|+++++...+               +.|..||.. ++... +..+......++|+    |+++.|+.+ 
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEE
Confidence            347899999999888777655               567777765 54432 33344457889999    999765554 


Q ss_pred             eCCCcEEEEEcC-CCceee--eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE
Q psy3337         178 AKDGKAFVWNSK-NGSLSK--ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR  254 (297)
Q Consensus       178 ~~d~~v~lwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~  254 (297)
                      ..++.|.+||+. ++....  .+.. .+.. .    ......++++++|..+++...        ++.|.+||..+++.+
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~-~----~~~p~~i~~d~~G~l~v~~~~--------~~~i~~~d~~~g~~~  260 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGH-IPGT-H----EGGADGMDFDEDNNLLVANWG--------SSHIEVFGPDGGQPK  260 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEE-CCCC-S----SCEEEEEEEBTTCCEEEEEET--------TTEEEEECTTCBSCS
T ss_pred             CCCCeEEEEECCCCCccccceEEEE-CCCC-C----CCCCCceEECCCCCEEEEEcC--------CCEEEEEcCCCCcEe
Confidence            567899999986 443211  1110 0100 0    011234778999987766433        689999999877766


Q ss_pred             EEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         255 LAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       255 ~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..+..+.. +.+++|+|+|+.|++++..++.|..|++..
T Consensus       261 ~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          261 MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            66666544 999999999996665554268999999864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=1.3e-12  Score=111.71  Aligned_cols=177  Identities=16%  Similarity=0.036  Sum_probs=100.5

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCC-ee-EEEEc
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKE-ID-DVDFS  168 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~-~~~~s  168 (297)
                      .++.|+.|+. |..+|+.+-.+. .  +.+.+..+.+++..+++++.|+.|+.||..+++.+..+..+... +. +..+.
T Consensus        14 ~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~   90 (369)
T 2hz6_A           14 VSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS   90 (369)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-
T ss_pred             EEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe
Confidence            5667888888 999999988886 4  44555556677888888899999999999999887766543211 11 11111


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                       .+..+++++.|+.|+.||..+|+.+..+..+..              ..++|++..+++.+        .++.|+.||.
T Consensus        91 -~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--------------~~~~p~~~~v~~~~--------~dg~v~a~d~  147 (369)
T 2hz6_A           91 -SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--------------DSLSPSTSLLYLGR--------TEYTITMYDT  147 (369)
T ss_dssp             -----CCCCEEEEEEEEECCC------------------------------------EEEEE--------EEEEEECCCS
T ss_pred             -cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--------------ccccccCCEEEEEe--------cCCEEEEEEC
Confidence             345677788899999999999988877654321              22356777777744        4899999999


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCC---CEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDG---RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+|+.+..+.... ...+.++++.   ..+++++. ||.|+.||..+++.+
T Consensus       148 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          148 KTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNG-DGLVVTVDSESGDVL  196 (369)
T ss_dssp             SSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEET-SCEEEEECTTTCCEE
T ss_pred             CCCCEEEeEeccc-ccCccccCCccccceEEEECC-CCEEEEEECCCCcEE
Confidence            9988765543221 2233344432   56777888 999999999988754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.18  E-value=4e-09  Score=94.91  Aligned_cols=148  Identities=16%  Similarity=0.074  Sum_probs=114.0

Q ss_pred             cCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeeccCCCC
Q psy3337         127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK--NGSLSKELKWNTPDN  204 (297)
Q Consensus       127 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~--~~~~~~~~~~~~~~~  204 (297)
                      |.+.++++...++.|.++|..+++.+..+.. ...+..+.|+||++++++++.|+.|.+||+.  +++.+..+....   
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---  240 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---  240 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---
Confidence            4456777888899999999999998888864 3357799999999999999999999999996  777776664321   


Q ss_pred             ceEEEEeeeeeeeeeC----CCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-----------C-CeEEEEE
Q psy3337         205 IKYLFKRCRYGLVEDS----PKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-----------E-SLSALAV  268 (297)
Q Consensus       205 ~~~~~~~~~~~~~~~s----~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-----------~-~v~~~~~  268 (297)
                       .       -..++++    |||++++++..       .++.|.++|..+.+.+..+...           . .+..+..
T Consensus       241 -~-------P~~ia~s~~~~pDGk~l~v~n~-------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          241 -E-------ARSIETSKMEGWEDKYAIAGAY-------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             -E-------EEEEEECCSTTCTTTEEEEEEE-------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             -C-------CceeEEccccCCCCCEEEEEEc-------cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence             1       1137789    69999988754       4689999999999888776532           2 3788899


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ++++..++.....+|.|.++|..+.
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~  330 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDL  330 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCC
Confidence            9987665554443799999997653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=7.2e-09  Score=86.01  Aligned_cols=173  Identities=9%  Similarity=-0.043  Sum_probs=114.5

Q ss_pred             eEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEE
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lw  186 (297)
                      .+..+. ..........|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|
T Consensus        36 ~~~~l~-~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           36 RLLTLY-DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCEEEE-CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             ceEEEe-cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence            344554 4555677999999998 6677778899999997 454 34555566778999999999977766666889999


Q ss_pred             EcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec----cC-----cccccCCCCeEEEEeCCCCceEEEe
Q psy3337         187 NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA----NP-----LAQNKRGISYVQQWDVDSGRLRLAR  257 (297)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~----~~-----~~~~g~~d~~i~~wd~~~~~~~~~~  257 (297)
                      +.. ++. ..+......     ........++++|+|..+++-.    ..     ........+.|+.||..+++.....
T Consensus       113 ~~~-g~~-~~~~~~~~~-----~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~  185 (305)
T 3dr2_A          113 DAD-GQA-HLLVGRYAG-----KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA  185 (305)
T ss_dssp             CTT-SCE-EEEECEETT-----EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred             CCC-CCE-EEEEeccCC-----CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence            975 543 222211100     0111234578899998777521    00     0000011357888888777655444


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEecCC------CeEEEEEeCC
Q psy3337         258 EMKESLSALAVRDDGRFVAVGTMFT------GSVFVYIAFS  292 (297)
Q Consensus       258 ~~~~~v~~~~~s~dg~~l~~~~~~d------g~i~vwd~~~  292 (297)
                       .......++|+|||+.|+++.. .      +.|++|++..
T Consensus       186 -~~~~p~gl~~spdg~~lyv~~~-~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          186 -DLDHPNGLAFSPDEQTLYVSQT-PEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             -EESSEEEEEECTTSSEEEEEEC-CC---CCCEEEEEEEET
T ss_pred             -cCCCCcceEEcCCCCEEEEEec-CCcCCCCCEEEEEEecC
Confidence             3334789999999998888776 5      6899999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.16  E-value=2.5e-08  Score=81.83  Aligned_cols=176  Identities=7%  Similarity=0.015  Sum_probs=118.6

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-eEEeccccCCeeEEEEccCCCE
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-LLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      ++.|.+ +.. ++........+...+.+++++++|+++++...++.|..||.. ++. ...+......+.++++.|++++
T Consensus        35 ~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l  112 (299)
T 2z2n_A           35 ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDI  112 (299)
T ss_dssp             TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred             CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCE
Confidence            455555 555 443322212345678999999999988887778899999976 332 2222234557899999999988


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce
Q psy3337         174 IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                      +++...++.|.+||. +++... +......        .....+++++++..+++..        ..+.|..||. +++.
T Consensus       113 ~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~--------~~~~~i~~~~~g~l~v~~~--------~~~~i~~~~~-~g~~  173 (299)
T 2z2n_A          113 WFTEMNGNRIGRITD-DGKIRE-YELPNKG--------SYPSFITLGSDNALWFTEN--------QNNAIGRITE-SGDI  173 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEE-EECSSTT--------CCEEEEEECTTSCEEEEET--------TTTEEEEECT-TCCE
T ss_pred             EEEecCCceEEEECC-CCCEEE-ecCCCCC--------CCCceEEEcCCCCEEEEeC--------CCCEEEEEcC-CCcE
Confidence            888777889999998 554432 2111111        1123477899997666533        3678999999 6665


Q ss_pred             EEE-eccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         254 RLA-REMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       254 ~~~-~~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ... +.... .+.+++++++|.+.++... ++.|.+||. +++
T Consensus       174 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~g~  214 (299)
T 2z2n_A          174 TEFKIPTPASGPVGITKGNDDALWFVEII-GNKIGRITT-SGE  214 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-TCC
T ss_pred             EEeeCCCCCCcceeEEECCCCCEEEEccC-CceEEEECC-CCc
Confidence            543 22222 3889999999997777666 789999998 554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=2.7e-09  Score=99.50  Aligned_cols=175  Identities=13%  Similarity=0.119  Sum_probs=116.2

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCc--------------EEEEeCCCCe----eeEEecc
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGH--------------LRLWSFPKMK----PLLHIEA  157 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~--------------i~iwd~~~~~----~~~~~~~  157 (297)
                      .+|++ ++.+++.+....  +...+..++|+|| +.|+.++.++.              |++|++.++.    .+.....
T Consensus       189 ~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~  265 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE  265 (741)
T ss_dssp             EEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence            57888 999988765422  2222357899999 99988877654              8999987665    2222233


Q ss_pred             ccCCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCC--ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         158 HSKEIDDVDFSISGEQIVSIAKDG-----KAFVWNSKNG--SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       158 ~~~~v~~~~~sp~~~~l~s~~~d~-----~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                      +...+..+.|+|||++|+..+.++     .|++||+.++  +....+..+...  ...        . ++|+|..|+..+
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~~--------~-~~~dg~~l~~~s  334 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA--QWD--------F-VDGVGDQLWFVS  334 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS--CEE--------E-EEEETTEEEEEE
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc--eEE--------E-EeccCCEEEEEE
Confidence            334588999999999988776543     7999999876  313444333211  110        1 247888888766


Q ss_pred             cCcccccCCCCeEEEEeCCCC--ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         231 NPLAQNKRGISYVQQWDVDSG--RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      ..    +...+.|.+||+.++  +....+..+.. +..++|+ ++.++++... |+..+||.+.
T Consensus       335 ~~----~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~  392 (741)
T 1yr2_A          335 GD----GAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH-DAKSQVLAFD  392 (741)
T ss_dssp             CT----TCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE-TTEEEEEEEE
T ss_pred             CC----CCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEe
Confidence            51    233577999999874  34444555544 7778887 6677788888 8887777554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=5.2e-09  Score=89.90  Aligned_cols=194  Identities=13%  Similarity=0.130  Sum_probs=128.5

Q ss_pred             cCCCCCCCceEEE-EeeCC----CeEEEEe------cCCCCcEEEEEEecCCCEEEEEcCC------CcEEEEeCCCCee
Q psy3337          89 LNSIDSKEKNLRF-GFKTF----DSVQTVF------AGSESLQRVVRLSRNGDLMVTGGTD------GHLRLWSFPKMKP  151 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~~~----~~~~~~~------~~h~~~v~~~~~s~~g~~l~s~~~d------~~i~iwd~~~~~~  151 (297)
                      |-.++..+++|.+ |..+.    +...++.      ......-..+..+|+| +++++..+      +.|.++|..+.+.
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v  176 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP  176 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence            3446777788999 88655    4555551      0011234577889999 77776665      7899999999999


Q ss_pred             eEEecccc---CCeeEEEEccCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeeeccCCCCceEEE
Q psy3337         152 LLHIEAHS---KEIDDVDFSISGEQIVSIA-------------------KDGKAFVWNSKNGSLSKELKWNTPDNIKYLF  209 (297)
Q Consensus       152 ~~~~~~~~---~~v~~~~~sp~~~~l~s~~-------------------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~  209 (297)
                      +.++....   ..-..+.|+|+++.++++.                   .+.+|.+||+.+++.+.++....+......+
T Consensus       177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i  256 (462)
T 2ece_A          177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL  256 (462)
T ss_dssp             EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred             EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence            88886332   2245688999999988885                   3689999999988877777653211001111


Q ss_pred             EeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce--EEEe--cc-----------------CCCeEEEEE
Q psy3337         210 KRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL--RLAR--EM-----------------KESLSALAV  268 (297)
Q Consensus       210 ~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~--~~-----------------~~~v~~~~~  268 (297)
                            .++++|++++++.+..  +-.-..++.|.+|....++.  ...+  ..                 ...+..+.+
T Consensus       257 ------~f~~~Pdg~~aYV~~e--~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          257 ------RPLHDPTKLMGFINMV--VSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             ------EECSSTTCCEEEEEEE--EETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             ------EeeECCCCCEEEEEEe--eeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence                  1345999998887542  00001367787766554321  1111  10                 123788999


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeC
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      ||||++|.++....+.|.+||+.
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEec
Confidence            99999999988878999999985

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.14  E-value=6.8e-08  Score=79.21  Aligned_cols=172  Identities=7%  Similarity=-0.068  Sum_probs=114.9

Q ss_pred             CceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE-EeccccCCeeEEEEccCCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL-HIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~  172 (297)
                      ++.|.. +.. ++.. .+. ......+.++++.++|+++++...++.|..||.. ++... .+......+.++++.++++
T Consensus        82 ~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~  158 (300)
T 2qc5_A           82 ANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA  158 (300)
T ss_dssp             TTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS
T ss_pred             CCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC
Confidence            445555 555 5443 332 2344668899999999988888778899999987 55432 2333455789999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR  252 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~  252 (297)
                      ++++...++.|..||. +++... +......  .      ....+++++++..+++...        .+.|.+||. +++
T Consensus       159 l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~--~------~~~~i~~d~~g~l~v~~~~--------~~~i~~~~~-~g~  219 (300)
T 2qc5_A          159 LWFTENQNNSIGRITN-TGKLEE-YPLPTNA--A------APVGITSGNDGALWFVEIM--------GNKIGRITT-TGE  219 (300)
T ss_dssp             EEEEETTTTEEEEECT-TCCEEE-EECSSTT--C------CEEEEEECTTSSEEEEETT--------TTEEEEECT-TCC
T ss_pred             EEEEecCCCeEEEECC-CCcEEE-eeCCCCC--C------CcceEEECCCCCEEEEccC--------CCEEEEEcC-CCc
Confidence            7777666788999998 554432 3221111  1      1224678888876655332        578999998 455


Q ss_pred             eEEE-eccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         253 LRLA-REMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       253 ~~~~-~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      .... +... ..+.+++++++|+..++... ++.|..||.
T Consensus       220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~  258 (300)
T 2qc5_A          220 ISEYDIPTPNARPHAITAGKNSEIWFTEWG-ANQIGRITN  258 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECT
T ss_pred             EEEEECCCCCCCceEEEECCCCCEEEeccC-CCeEEEECC
Confidence            4433 2222 33899999999986666655 789999987

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.13  E-value=1.1e-08  Score=84.79  Aligned_cols=181  Identities=9%  Similarity=0.034  Sum_probs=117.3

Q ss_pred             CCCCceEEE-EeeCCCeEEEEe---cCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEE-ecc----ccCCe
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVF---AGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLH-IEA----HSKEI  162 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~---~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~----~~~~v  162 (297)
                      +..++.|.+ +..+++......   .++...+.+++++++ |+++++.. .+.|.+||.. ++.... ...    ....+
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  119 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGC  119 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCC
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCC
Confidence            345667777 767776543221   125567889999999 76555554 4479999988 664332 221    12358


Q ss_pred             eEEEEccCCCEEEEEeCC---------------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeC----CCC
Q psy3337         163 DDVDFSISGEQIVSIAKD---------------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDS----PKR  223 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d---------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~  223 (297)
                      .+++++|+++++++...+               +.|..||.. ++........           .....++++    |++
T Consensus       120 ~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-----------~~~~~i~~~~~~d~dg  187 (314)
T 1pjx_A          120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-----------QFPNGIAVRHMNDGRP  187 (314)
T ss_dssp             CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-----------SSEEEEEEEECTTSCE
T ss_pred             cCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-----------CCcceEEEecccCCCC
Confidence            899999999888776654               567777764 4432221110           112346778    999


Q ss_pred             eEEEEeccCcccccCCCCeEEEEeCC-CCc-----eEEEeccC--CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         224 SRLFTLANPLAQNKRGISYVQQWDVD-SGR-----LRLAREMK--ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       224 ~~l~~~~~~~~~~g~~d~~i~~wd~~-~~~-----~~~~~~~~--~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +.++.+.       ..++.|.+||+. +++     ....+..+  ..+..++++++|+++++... ++.|.+||..+++.
T Consensus       188 ~~l~v~~-------~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~  259 (314)
T 1pjx_A          188 YQLIVAE-------TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQP  259 (314)
T ss_dssp             EEEEEEE-------TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTCBSC
T ss_pred             CEEEEEE-------CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-CCEEEEEcCCCCcE
Confidence            7766643       236899999986 444     22333434  33889999999998888877 89999999886654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.11  E-value=4.4e-08  Score=79.05  Aligned_cols=180  Identities=9%  Similarity=0.018  Sum_probs=122.7

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      ++.|++ |+.+++.+..+..+.......+++.  ++.| ++.-.++.+.++|..+.+.+.++.....  ....+++|+..
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~  118 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKI  118 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSS
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCE
Confidence            568888 9999999988763333333345554  4444 4555688999999999998888853212  23446668887


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce
Q psy3337         174 IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                      ++.+..++.|.++|..+.+.+..+......  ..   ....+.+.+. ++...+...        .++.|.+.|..+++.
T Consensus       119 l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~--~p---~~~~nele~~-dg~lyvn~~--------~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          119 LYGSDGTSILYEIDPHTFKLIKKHNVKYNG--HR---VIRLNELEYI-NGEVWANIW--------QTDCIARISAKDGTL  184 (266)
T ss_dssp             EEEECSSSEEEEECTTTCCEEEEEECEETT--EE---CCCEEEEEEE-TTEEEEEET--------TSSEEEEEETTTCCE
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEEECCCC--cc---cccceeEEEE-CCEEEEecC--------CCCeEEEEECCCCcE
Confidence            777777899999999998887776532100  00   0012235566 665444432        368999999999999


Q ss_pred             EEEeccC--------------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         254 RLAREMK--------------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       254 ~~~~~~~--------------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +..+...              .....++|+|+++.|++++...+.|.+.++...
T Consensus       185 ~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          185 LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            8887642              136899999998766555543889999888654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.11  E-value=1.7e-08  Score=87.45  Aligned_cols=186  Identities=11%  Similarity=0.032  Sum_probs=116.0

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC--cEEEEeCCCCeeeEEe----ccccCCeeEE
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG--HLRLWSFPKMKPLLHI----EAHSKEIDDV  165 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~--~i~iwd~~~~~~~~~~----~~~~~~v~~~  165 (297)
                      ...++.|+. +..++....... .... .. ++|+|+++.|+++..++  .|.+|+...+.....+    ......+.++
T Consensus       148 d~~~~~I~~id~~~g~~~~~~~-~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~i  224 (409)
T 3hrp_A          148 QRDDPRVRLISVDDNKVTTVHP-GFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAV  224 (409)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEE-TCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBC
T ss_pred             ecCCCcEEEEECCCCEEEEeec-cCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEE
Confidence            334456666 665555444333 3222 23 99999999998888766  7888887655433333    2245668899


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +++|++..|+.+..++.|+.||+.++.. ..+......+..   ....+..++++|++..|+.+.       ...+.|+.
T Consensus       225 av~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~---~~~P~~~ia~~p~~g~lyv~d-------~~~~~I~~  293 (409)
T 3hrp_A          225 ALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSL---GTNPGPYLIYYFVDSNFYMSD-------QNLSSVYK  293 (409)
T ss_dssp             EECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCC---CCSSCCEEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred             EEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCC---CCCccccEEEeCCCCEEEEEe-------CCCCEEEE
Confidence            9999555555577788999999987653 222111000000   000011478899644455432       24789999


Q ss_pred             EeCCCCceEEEeccC----------------CCeEEEEEcCCCCEEEEEe-cCCCeEEEEEeCCcee
Q psy3337         246 WDVDSGRLRLAREMK----------------ESLSALAVRDDGRFVAVGT-MFTGSVFVYIAFSLQM  295 (297)
Q Consensus       246 wd~~~~~~~~~~~~~----------------~~v~~~~~s~dg~~l~~~~-~~dg~i~vwd~~~~~~  295 (297)
                      |+....  +..+.++                .....++++|+|+++++-. . ++.|+.|++.+++.
T Consensus       294 ~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          294 ITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-GYCLRKLDILDGYV  357 (409)
T ss_dssp             ECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-TCEEEEEETTTTEE
T ss_pred             EecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-CCEEEEEECCCCEE
Confidence            998743  2222222                2378999999999777776 7 99999999776653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.10  E-value=7.1e-09  Score=88.20  Aligned_cols=154  Identities=7%  Similarity=-0.026  Sum_probs=103.4

Q ss_pred             EecCCCEEEEEcC-----CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------CCCcEEEEEcC
Q psy3337         125 LSRNGDLMVTGGT-----DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------KDGKAFVWNSK  189 (297)
Q Consensus       125 ~s~~g~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d~~v~lwd~~  189 (297)
                      ..|+++.++....     ++.|.++|..+++.+..+..-..+ . ++++||+++++++.          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            3577777766654     679999999999998888754444 4 99999999888765          36789999999


Q ss_pred             CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEc
Q psy3337         190 NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVR  269 (297)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s  269 (297)
                      +.+.+..+......  ... ....-..++++|||++++....      ..++.|.++|+.+++.+..+.....  ...+.
T Consensus       118 t~~v~~~I~v~~g~--r~~-~g~~P~~~a~spDGk~lyVan~------~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P  186 (386)
T 3sjl_D          118 TLLPTADIELPDAP--RFL-VGTYPWMTSLTPDGKTLLFYQF------SPAPAVGVVDLEGKAFKRMLDVPDC--YHIFP  186 (386)
T ss_dssp             TCCEEEEEEETTCC--CCC-BSCCGGGEEECTTSSEEEEEEC------SSSCEEEEEETTTTEEEEEEECCSE--EEEEE
T ss_pred             CCeEEEEEECCCcc--ccc-cCCCCceEEEcCCCCEEEEEEc------CCCCeEEEEECCCCcEEEEEECCCc--ceeec
Confidence            99988877532100  000 0000113778999999988642      1257999999999999988865432  11222


Q ss_pred             CCCCEEEEEecCCCeEEEEEeCC
Q psy3337         270 DDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ...+.+++.+. ||.+.+.++.+
T Consensus       187 ~g~~~~~~~~~-DG~~~~v~~~~  208 (386)
T 3sjl_D          187 TAPDTFFMHCR-DGSLAKVAFGT  208 (386)
T ss_dssp             EETTEEEEEET-TSCEEEEECCS
T ss_pred             CCCceeEEECC-CCCEEEEECCC
Confidence            23344445555 66666666544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.10  E-value=3.4e-09  Score=98.04  Aligned_cols=167  Identities=13%  Similarity=0.079  Sum_probs=106.0

Q ss_pred             CCCCcEEEEEEecCCCEEEE-----EcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCc-------
Q psy3337         115 GSESLQRVVRLSRNGDLMVT-----GGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK-------  182 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~-------  182 (297)
                      +|...+..++|||||++||.     |+....|++||+.+++.+... .+......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            45557889999999998884     333357999999999865431 111113578999 9999998887743       


Q ss_pred             ------EEEEEcCCCceeeeeeccCCC-CceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc-eE
Q psy3337         183 ------AFVWNSKNGSLSKELKWNTPD-NIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR-LR  254 (297)
Q Consensus       183 ------v~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-~~  254 (297)
                            |++|++.++.....+....+. ...+      +..+.++|||++|+....    .+.....|+++|+.++. ..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~------~~~~~~SpDg~~l~~~~~----~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHR------YVGATVTEDDRFLLISAA----NSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCS------EEEEEECTTSCEEEEEEE----SSSSCCEEEEEETTSTTCCC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeE------EEEEEEcCCCCEEEEEEc----cCCCCcEEEEEECCCCCCce
Confidence                  999998776432111111111 0011      123668999998866543    13345699999998753 33


Q ss_pred             EEeccCCC-eEEEEEcCCCCEEEEEecCC---CeEEEEEeCCce
Q psy3337         255 LAREMKES-LSALAVRDDGRFVAVGTMFT---GSVFVYIAFSLQ  294 (297)
Q Consensus       255 ~~~~~~~~-v~~~~~s~dg~~l~~~~~~d---g~i~vwd~~~~~  294 (297)
                      ..+..+.. .... |+++|..|+..+..+   +.|.++|+.++.
T Consensus       274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            34444433 4444 677777665554313   579999987754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.10  E-value=3.1e-08  Score=79.98  Aligned_cols=166  Identities=13%  Similarity=0.062  Sum_probs=114.5

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcC--CCcEEEEeCCCCeeeEEecccc-CCeeEEEEccCCCEEEE-EeCCCc
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGT--DGHLRLWSFPKMKPLLHIEAHS-KEIDDVDFSISGEQIVS-IAKDGK  182 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s-~~~d~~  182 (297)
                      +.+.++..+.......+.|+|++.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  +..|+. .-.++.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence            4456664333345689999998755555443  6799999999999888765222 223355554  445544 446789


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC-
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE-  261 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~-  261 (297)
                      +.++|..+.+.+.++....+.+            +.+++|++.++....        ++.|.++|..+.+.+..+.... 
T Consensus        88 v~viD~~t~~v~~~i~~g~~~g------------~glt~Dg~~l~vs~g--------s~~l~viD~~t~~v~~~I~Vg~~  147 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKDG------------WGLATDGKILYGSDG--------TSILYEIDPHTFKLIKKHNVKYN  147 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSSC------------CEEEECSSSEEEECS--------SSEEEEECTTTCCEEEEEECEET
T ss_pred             EEEEECCCCcEEEEEECCCCCe------------EEEEECCCEEEEECC--------CCeEEEEECCCCcEEEEEEECCC
Confidence            9999999999888875432222            224667887876433        7899999999988887776421 


Q ss_pred             -----CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         262 -----SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       262 -----~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                           .+..+.|. +|+..+.... ++.|.+.|+.+++.+
T Consensus       148 ~~p~~~~nele~~-dg~lyvn~~~-~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          148 GHRVIRLNELEYI-NGEVWANIWQ-TDCIARISAKDGTLL  185 (266)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETT-SSEEEEEETTTCCEE
T ss_pred             CcccccceeEEEE-CCEEEEecCC-CCeEEEEECCCCcEE
Confidence                 26788888 7754444445 889999999998865

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.09  E-value=2.8e-11  Score=103.54  Aligned_cols=146  Identities=13%  Similarity=0.119  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceE
Q psy3337         128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKY  207 (297)
Q Consensus       128 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~  207 (297)
                      ++..+++++.|+.|+.||..+|+.+..+..  ..+.+..+.+++..+++++.|+.|+.||..+|+.+..+..+.+..   
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~---   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL---   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc---
Confidence            567899999999999999999999988876  456666666778788888899999999999888766554321110   


Q ss_pred             EEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEE
Q psy3337         208 LFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFV  287 (297)
Q Consensus       208 ~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~v  287 (297)
                      . ..    ..... ++..+++        |+.++.|+.||..+|+.+..+..+..   ..++|++..|++++. |+.|+.
T Consensus        83 ~-~~----sp~~~-~~~~v~~--------g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~-dg~v~a  144 (369)
T 2hz6_A           83 V-QA----SPCRS-SDGILYM--------GKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRT-EYTITM  144 (369)
T ss_dssp             H-TT----CSCC------CCC--------CEEEEEEEEECCC-------------------------EEEEEE-EEEEEC
T ss_pred             c-cc----CceEe-cCCEEEE--------EeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEec-CCEEEE
Confidence            0 00    00011 2333444        45589999999999998877765542   345678889999998 999999


Q ss_pred             EEeCCceec
Q psy3337         288 YIAFSLQMC  296 (297)
Q Consensus       288 wd~~~~~~~  296 (297)
                      ||..+++.+
T Consensus       145 ~d~~tG~~~  153 (369)
T 2hz6_A          145 YDTKTRELR  153 (369)
T ss_dssp             CCSSSSSCC
T ss_pred             EECCCCCEE
Confidence            999998754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.09  E-value=6.7e-09  Score=95.83  Aligned_cols=201  Identities=12%  Similarity=0.132  Sum_probs=135.0

Q ss_pred             CCceEEE-EeeCCCeEEEEecC-CC-----------------------------CcEEEEEEecCCCEEEEEcCCCc---
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAG-SE-----------------------------SLQRVVRLSRNGDLMVTGGTDGH---  140 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~-h~-----------------------------~~v~~~~~s~~g~~l~s~~~d~~---  140 (297)
                      .++.|+. |..+|+.+-.+... +.                             .....++++|++.+++.+..++.   
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence            3678887 99999988766511 10                             00125788998889998887763   


Q ss_pred             ----------------EEEEeCCCCeeeEEecc--cc-------CCeeEEEEccCCC---EEEEEeCCCcEEEEEcCCCc
Q psy3337         141 ----------------LRLWSFPKMKPLLHIEA--HS-------KEIDDVDFSISGE---QIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       141 ----------------i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~sp~~~---~l~s~~~d~~v~lwd~~~~~  192 (297)
                                      |..||..+|+.+..++.  |.       ..+.......+|+   .++.++.+|.++++|..+|+
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            99999999999887764  21       1122222223554   78889999999999999999


Q ss_pred             eeeeeeccC------------------------CCCceEEEEee-----eeeeeeeCCCCeEEEEeccCc----------
Q psy3337         193 LSKELKWNT------------------------PDNIKYLFKRC-----RYGLVEDSPKRSRLFTLANPL----------  233 (297)
Q Consensus       193 ~~~~~~~~~------------------------~~~~~~~~~~~-----~~~~~~~s~~~~~l~~~~~~~----------  233 (297)
                      .+.......                        +..........     .+..++++|+...+++.....          
T Consensus       341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred             EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence            875433211                        00001111110     123477888888777653310          


Q ss_pred             ---------cccc------------------CCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEE
Q psy3337         234 ---------AQNK------------------RGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVF  286 (297)
Q Consensus       234 ---------~~~g------------------~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~  286 (297)
                               ...|                  ..++.|..||+.+|+.+-.+..+..+....++..+..+++|+. ||.|+
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~-dg~l~  499 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA-DGRVI  499 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-TSEEE
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC-CCcEE
Confidence                     0001                  1248899999999999988877665554566778889999999 99999


Q ss_pred             EEEeCCceec
Q psy3337         287 VYIAFSLQMC  296 (297)
Q Consensus       287 vwd~~~~~~~  296 (297)
                      .||..+|+.|
T Consensus       500 a~D~~tG~~l  509 (689)
T 1yiq_A          500 AYAADTGEKL  509 (689)
T ss_dssp             EEETTTCCEE
T ss_pred             EEECCCCccc
Confidence            9999999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.07  E-value=7.7e-08  Score=80.60  Aligned_cols=176  Identities=13%  Similarity=0.088  Sum_probs=111.1

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc----ccCCeeEEEE
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA----HSKEIDDVDF  167 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~  167 (297)
                      +..++.|.. +..+++. ..+.  ....+.+++|+|+|+++++. .+ .|.+||..+++.......    ....+.++++
T Consensus        67 d~~~~~i~~~d~~~~~~-~~~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~  141 (326)
T 2ghs_A           67 NILERELHELHLASGRK-TVHA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM  141 (326)
T ss_dssp             EGGGTEEEEEETTTTEE-EEEE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE
T ss_pred             ECCCCEEEEEECCCCcE-EEEE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEE
Confidence            334556666 6665543 3332  34578999999999877765 34 499999887764322211    1235889999


Q ss_pred             ccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         168 SISGEQIVSIAK------DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       168 sp~~~~l~s~~~------d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      +|+|+++++...      .+.|..++  +++.. .+...          ......++|+|+++.++.+.       +.++
T Consensus       142 d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~----------~~~~~~i~~s~dg~~lyv~~-------~~~~  201 (326)
T 2ghs_A          142 HPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD----------ISIPNSICFSPDGTTGYFVD-------TKVN  201 (326)
T ss_dssp             CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE----------ESSEEEEEECTTSCEEEEEE-------TTTC
T ss_pred             CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC----------CcccCCeEEcCCCCEEEEEE-------CCCC
Confidence            999997775542      24555555  44332 22111          01123578999998877653       2368


Q ss_pred             eEEEEeCC--CC-c-----eEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         242 YVQQWDVD--SG-R-----LRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       242 ~i~~wd~~--~~-~-----~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .|.+||+.  ++ +     ....+..... +..++++++|.+.++... ++.|.+||. +++.
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~-~g~~  262 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDT-DGNH  262 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECT-TCCE
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEECC-CCCE
Confidence            99999986  55 3     2223332233 789999999987777766 789999997 4443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=2.6e-08  Score=88.53  Aligned_cols=182  Identities=11%  Similarity=0.038  Sum_probs=126.3

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEE-e-cCCCEEEEEc------------------CCCcEEEEeCCCC
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRL-S-RNGDLMVTGG------------------TDGHLRLWSFPKM  149 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~-s-~~g~~l~s~~------------------~d~~i~iwd~~~~  149 (297)
                      .....+..|.+ |+.+.++...+..........+++ + |+++++++++                  .++.+.+.|..+.
T Consensus       106 Vnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~  185 (595)
T 1fwx_A          106 MNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW  185 (595)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT
T ss_pred             EEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCC
Confidence            34445556766 888888777554233345678888 5 9999998884                  3467999999999


Q ss_pred             eeeEEeccccCCeeEEEEccCCCEEEEEeCCC--------------------------------------cEEEEEcCC-
Q psy3337         150 KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG--------------------------------------KAFVWNSKN-  190 (297)
Q Consensus       150 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~--------------------------------------~v~lwd~~~-  190 (297)
                      +.+.++.--. ....++++|+|+++++.+.+.                                      .|.+.|.++ 
T Consensus       186 ~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~  264 (595)
T 1fwx_A          186 EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE  264 (595)
T ss_dssp             EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG
T ss_pred             eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc
Confidence            8887776322 457788999999999887553                                      234444443 


Q ss_pred             -Cce-eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc------------eEEE
Q psy3337         191 -GSL-SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR------------LRLA  256 (297)
Q Consensus       191 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~------------~~~~  256 (297)
                       ++. +..+..           ...-..+.++|||++++....       .+.+|.++|+.+.+            .+..
T Consensus       265 ~~~~~~~~Ipv-----------g~~PhGv~~sPDGk~v~V~~~-------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          265 ASSLFTRYIPI-----------ANNPHGCNMAPDKKHLCVAGK-------LSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             GCCSSEEEEEE-----------ESSCCCEEECTTSSEEEEECT-------TSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             CCceeEEEEec-----------CCCceEEEEcCCCCEEEEeCC-------CCCeEEEEECcccccccccccCcccceEEE
Confidence             222 122211           111224788999999988643       57899999999653            4556


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         257 REMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       257 ~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +........++|+|+| ++.+....|+.|.+||+.+
T Consensus       327 v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          327 PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            6555669999999999 6665555599999999876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.03  E-value=3.5e-07  Score=75.46  Aligned_cols=164  Identities=12%  Similarity=0.011  Sum_probs=103.6

Q ss_pred             CCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         115 GSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      .+.....+..|+|++ .++++...++.|..||..+++. ..+. ....+.+++++|+++++++ . +..|.+||..+++.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence            344455689999964 5667777789999999987654 2332 3567999999999995554 3 56799999987764


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc---ccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcC
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ---NKRGISYVQQWDVDSGRLRLAREMKESLSALAVRD  270 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~---~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~  270 (297)
                      ....... +.. .    ...+..++++|+|+.+++.......   .....+.|+.++.. ++.............++|+|
T Consensus        86 ~~~~~~~-~~~-~----~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           86 VVLATVD-NDK-K----NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSL  158 (297)
T ss_dssp             EEEEECC-TTC-S----SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECT
T ss_pred             EEEEecC-CCC-C----CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcC
Confidence            3222211 110 0    1234458889999966654220000   00123455555554 44443333333478999999


Q ss_pred             CCCEEEEE-ecCCCeEEEEEe
Q psy3337         271 DGRFVAVG-TMFTGSVFVYIA  290 (297)
Q Consensus       271 dg~~l~~~-~~~dg~i~vwd~  290 (297)
                      |++.|+.+ +. ++.|.+|++
T Consensus       159 dg~~lyv~~~~-~~~i~~~~~  178 (297)
T 3g4e_A          159 DHKIFYYIDSL-SYSVDAFDY  178 (297)
T ss_dssp             TSCEEEEEEGG-GTEEEEEEE
T ss_pred             CCCEEEEecCC-CCcEEEEec
Confidence            99877554 45 789999997

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.02  E-value=4.3e-08  Score=83.73  Aligned_cols=153  Identities=7%  Similarity=-0.050  Sum_probs=104.5

Q ss_pred             ecCCCEEEEEcC--CC---cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------CCCcEEEEEcCC
Q psy3337         126 SRNGDLMVTGGT--DG---HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------KDGKAFVWNSKN  190 (297)
Q Consensus       126 s~~g~~l~s~~~--d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d~~v~lwd~~~  190 (297)
                      .|++++++....  ..   .|.+||..+++.+..+.....+  .++++||+++++.+.          .++.|.+||..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            466766666543  22   7899999999988877654433  999999999998875          367899999998


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE-eccCCCeEEEEEc
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA-REMKESLSALAVR  269 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~~~v~~~~~s  269 (297)
                      .+.+..+....+.  ... ....-..+.++|||++|+.+..      ..+..|.++| .+++.+.. +.....   +.+.
T Consensus       107 ~~~~~~i~~~~~~--~~~-~g~~p~~~~~spDG~~l~v~n~------~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~  173 (373)
T 2mad_H          107 FLPIADIELPDAP--RFD-VGPYSWMNANTPNNADLLFFQF------AAGPAVGLVV-QGGSSDDQLLSSPTC---YHIH  173 (373)
T ss_pred             CcEEEEEECCCcc--ccc-cCCCccceEECCCCCEEEEEec------CCCCeEEEEE-CCCCEEeEEcCCCce---EEEE
Confidence            8887776532100  000 0000113778999999998653      1247899999 99998877 655432   4455


Q ss_pred             CCC-CEEEEEecCCCeEEEEEeCCcee
Q psy3337         270 DDG-RFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       270 ~dg-~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |++ +.+++.+. ||.+.+||. +++.
T Consensus       174 ~~~~~~~~~~~~-dg~~~~vd~-~g~~  198 (373)
T 2mad_H          174 PGAPSTFYLLCA-QGGLAKTDH-AGGA  198 (373)
T ss_pred             eCCCceEEEEcC-CCCEEEEEC-CCcE
Confidence            655 34455566 889988888 6654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=2.3e-08  Score=92.10  Aligned_cols=200  Identities=15%  Similarity=0.160  Sum_probs=135.6

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCC-------------------------------cEEEEEEecCCCEEEEEcCCC----
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSES-------------------------------LQRVVRLSRNGDLMVTGGTDG----  139 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~-------------------------------~v~~~~~s~~g~~l~s~~~d~----  139 (297)
                      ++.|+. |..+|+.+-.+......                               ....++++|++..++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            678888 99999988777621111                               012578899988888887664    


Q ss_pred             ---------------cEEEEeCCCCeeeEEecc--cc-------CCeeEEEEccCC---CEEEEEeCCCcEEEEEcCCCc
Q psy3337         140 ---------------HLRLWSFPKMKPLLHIEA--HS-------KEIDDVDFSISG---EQIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       140 ---------------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~sp~~---~~l~s~~~d~~v~lwd~~~~~  192 (297)
                                     .|..+|..+++.+..++.  |.       ....-+....+|   ..++.++.+|.++++|..+|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           499999999998877653  21       112223333467   678899999999999999999


Q ss_pred             eeeeeeccCCC-------CceEEE-------------Ee-----eeeeeeeeCCCCeEEEEeccCc--c-------ccc-
Q psy3337         193 LSKELKWNTPD-------NIKYLF-------------KR-----CRYGLVEDSPKRSRLFTLANPL--A-------QNK-  237 (297)
Q Consensus       193 ~~~~~~~~~~~-------~~~~~~-------------~~-----~~~~~~~~s~~~~~l~~~~~~~--~-------~~g-  237 (297)
                      .+..+......       .....+             ..     ..+..++++|++..+++.....  .       ..| 
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            88766532100       000000             00     0112467889888777753310  0       000 


Q ss_pred             -------------------------CCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         238 -------------------------RGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       238 -------------------------~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                                               ...+.|..||+.+++.+-.+.....+.+..++.++..+++++. ||.+++||+.+
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~-dg~l~a~D~~t  507 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA-DGRLVAYHAAT  507 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-TSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC-CCcEEEEECCC
Confidence                                     0237899999999999888776555556667778888999998 99999999999


Q ss_pred             ceec
Q psy3337         293 LQMC  296 (297)
Q Consensus       293 ~~~~  296 (297)
                      ++.+
T Consensus       508 G~~l  511 (677)
T 1kb0_A          508 GEKL  511 (677)
T ss_dssp             CCEE
T ss_pred             Ccee
Confidence            9875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.99  E-value=3.4e-07  Score=74.99  Aligned_cols=174  Identities=10%  Similarity=0.038  Sum_probs=115.7

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeee-EEeccccCCeeEEEEccCCC
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~  172 (297)
                      .++.|.+ +.. ++........+...+.+++++++|+++++...++.|..||.. ++.. ..+......+.++++.++++
T Consensus        39 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~  116 (300)
T 2qc5_A           39 KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD  116 (300)
T ss_dssp             TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC
Confidence            3455555 555 444332222344678899999999988887778899999987 5543 22232346789999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR  252 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~  252 (297)
                      ++++...++.|..||.. ++.. .+......  .      ....+++.+++..+++..        ..+.|..||. +++
T Consensus       117 l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~--~------~~~~i~~d~~g~l~v~~~--------~~~~i~~~~~-~g~  177 (300)
T 2qc5_A          117 IWFTQLNGDRIGKLTAD-GTIY-EYDLPNKG--S------YPAFITLGSDNALWFTEN--------QNNSIGRITN-TGK  177 (300)
T ss_dssp             EEEEETTTTEEEEECTT-SCEE-EEECSSTT--C------CEEEEEECTTSSEEEEET--------TTTEEEEECT-TCC
T ss_pred             EEEEccCCCeEEEECCC-CCEE-EccCCCCC--C------CceeEEECCCCCEEEEec--------CCCeEEEECC-CCc
Confidence            88887778899999986 5443 22211111  1      123467889998555533        2678999998 555


Q ss_pred             eEEE-eccCC-CeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         253 LRLA-REMKE-SLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       253 ~~~~-~~~~~-~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      .... ..... .+..++++++|.+.++... .+.|.+||.
T Consensus       178 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~  216 (300)
T 2qc5_A          178 LEEYPLPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT  216 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT
T ss_pred             EEEeeCCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC
Confidence            4432 22222 3899999999987777666 778999987

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.98  E-value=7.9e-08  Score=76.84  Aligned_cols=163  Identities=12%  Similarity=0.098  Sum_probs=113.8

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCee--EEEEccCCCEEEEEeCCCcEE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID--DVDFSISGEQIVSIAKDGKAF  184 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~--~~~~sp~~~~l~s~~~d~~v~  184 (297)
                      +.+.++..+.......+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ....  .+++..+ ++++..-.++.+.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEE
Confidence            44566643445566788887 4567778888899999999999988776 22 2333  3555432 3444445688999


Q ss_pred             EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC---
Q psy3337         185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE---  261 (297)
Q Consensus       185 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~---  261 (297)
                      +||..+.+.+.++... +.+            ..++++++.|+....        ++.|.++|..+.+.+..+....   
T Consensus       120 V~D~~Tl~~~~ti~~~-~eG------------wGLt~Dg~~L~vSdG--------s~~l~~iDp~T~~v~~~I~V~~~g~  178 (268)
T 3nok_A          120 TWSGMPPQRERTTRYS-GEG------------WGLCYWNGKLVRSDG--------GTMLTFHEPDGFALVGAVQVKLRGQ  178 (268)
T ss_dssp             EEETTTTEEEEEEECS-SCC------------CCEEEETTEEEEECS--------SSEEEEECTTTCCEEEEEECEETTE
T ss_pred             EEECCcCcEEEEEeCC-Cce------------eEEecCCCEEEEECC--------CCEEEEEcCCCCeEEEEEEeCCCCc
Confidence            9999999999888753 221            223456777777443        7899999999998888776522   


Q ss_pred             ---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         262 ---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       262 ---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                         .++.+.|. +|+..+..-. +..|.+.|..+++.+
T Consensus       179 ~v~~lNeLe~~-dG~lyanvw~-s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          179 PVELINELECA-NGVIYANIWH-SSDVLEIDPATGTVV  214 (268)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETT-CSEEEEECTTTCBEE
T ss_pred             ccccccccEEe-CCEEEEEECC-CCeEEEEeCCCCcEE
Confidence               25667776 7764444445 889999999999865

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.97  E-value=5.6e-08  Score=80.58  Aligned_cols=149  Identities=9%  Similarity=-0.029  Sum_probs=97.8

Q ss_pred             cEEEEEEecCCCEEEE----EcC-------------CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC-
Q psy3337         119 LQRVVRLSRNGDLMVT----GGT-------------DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD-  180 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-  180 (297)
                      .+..++++|+|+++++    |..             .+.|+.||..+++.....  .......++|+|+++.|+.+... 
T Consensus       132 ~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~  209 (305)
T 3dr2_A          132 SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPE  209 (305)
T ss_dssp             CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCC
Confidence            3567999999998886    332             256788887666644333  44567889999999988777665 


Q ss_pred             -----CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEE
Q psy3337         181 -----GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRL  255 (297)
Q Consensus       181 -----~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~  255 (297)
                           +.|.+||+..+. +........      ........++++++|...++ .         .+.|.+|+.. ++.+.
T Consensus       210 ~~~~~~~i~~~~~~~~~-l~~~~~~~~------~~~~~pdgi~~d~~G~lwv~-~---------~~gv~~~~~~-g~~~~  271 (305)
T 3dr2_A          210 QGHGSVEITAFAWRDGA-LHDRRHFAS------VPDGLPDGFCVDRGGWLWSS-S---------GTGVCVFDSD-GQLLG  271 (305)
T ss_dssp             ---CCCEEEEEEEETTE-EEEEEEEEC------CSSSCCCSEEECTTSCEEEC-C---------SSEEEEECTT-SCEEE
T ss_pred             cCCCCCEEEEEEecCCC-ccCCeEEEE------CCCCCCCeEEECCCCCEEEe-c---------CCcEEEECCC-CCEEE
Confidence                 689999987543 211100000      00001123667889984433 2         2359999984 77777


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         256 AREMKESLSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       256 ~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      .+..+..+.+++|+|+++.|+.++. ++ +..++
T Consensus       272 ~~~~~~~~~~~~f~~d~~~L~it~~-~~-l~~~~  303 (305)
T 3dr2_A          272 HIPTPGTASNCTFDQAQQRLFITGG-PC-LWMLP  303 (305)
T ss_dssp             EEECSSCCCEEEECTTSCEEEEEET-TE-EEEEE
T ss_pred             EEECCCceeEEEEeCCCCEEEEEcC-Ce-EEEEE
Confidence            7776666899999999999998886 54 44434

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.97  E-value=4.1e-07  Score=76.15  Aligned_cols=161  Identities=9%  Similarity=-0.049  Sum_probs=103.1

Q ss_pred             cEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy3337         119 LQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL  197 (297)
Q Consensus       119 ~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~  197 (297)
                      ...+..|+|++ .++++...++.|..||..+++.. .+. ....+.+++|+|+++++++. .+ .|.+||..+++... +
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~-~  124 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL-H  124 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE-E
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE-E
Confidence            45688999975 56667777889999999877643 332 34579999999999877764 44 49999998776532 2


Q ss_pred             eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEE
Q psy3337         198 KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAV  277 (297)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  277 (297)
                      .......     ....+..+.++|+|..+++.....  .....+.|+.++  +++.............++|+|||+.|+.
T Consensus       125 ~~~~~~~-----~~~~~~~i~~d~~G~l~v~~~~~~--~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          125 AELESDL-----PGNRSNDGRMHPSGALWIGTMGRK--AETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             ECSSTTC-----TTEEEEEEEECTTSCEEEEEEETT--CCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             eeCCCCC-----CCCCCCCEEECCCCCEEEEeCCCc--CCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEE
Confidence            2111100     012344578899998665532100  000135677777  4554433332234789999999987765


Q ss_pred             EecCCCeEEEEEeC--Cc
Q psy3337         278 GTMFTGSVFVYIAF--SL  293 (297)
Q Consensus       278 ~~~~dg~i~vwd~~--~~  293 (297)
                      +...++.|.+||+.  ++
T Consensus       196 ~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             EETTTCEEEEEEBCTTTC
T ss_pred             EECCCCEEEEEEcccccC
Confidence            54327899999985  55

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.95  E-value=1.5e-07  Score=75.17  Aligned_cols=165  Identities=18%  Similarity=0.168  Sum_probs=113.9

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe-CCCcE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA-KDGKA  183 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~d~~v  183 (297)
                      +.+.++..+.......+.|+ ++.++.+.+.+|  .|+.+|+.+++.+..+.-.. ........+++..|+... .++.+
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence            34555543445556889998 676667777766  89999999999888775433 333333333455555554 58899


Q ss_pred             EEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC---
Q psy3337         184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK---  260 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~---  260 (297)
                      .+||..+.+.+.++.... .+            ..+++++..|+....        +..|.++|..+.+.+..+...   
T Consensus       110 ~v~D~~t~~~~~ti~~~~-eG------------~glt~dg~~L~~SdG--------s~~i~~iDp~T~~v~~~I~V~~~g  168 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDG-EG------------WGLTHNDQYLIMSDG--------TPVLRFLDPESLTPVRTITVTAHG  168 (262)
T ss_dssp             EEEETTTCCEEEEEECSS-CC------------CCEEECSSCEEECCS--------SSEEEEECTTTCSEEEEEECEETT
T ss_pred             EEEECccCcEEEEEECCC-Cc------------eEEecCCCEEEEECC--------CCeEEEEcCCCCeEEEEEEeccCC
Confidence            999999999998887532 21            223466777777432        678999999999888877652   


Q ss_pred             ---CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         261 ---ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       261 ---~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                         ..++.+.|. +|+..+..-. ++.|.+.|..+++.+
T Consensus       169 ~~~~~lNELe~~-~G~lyan~w~-~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          169 EELPELNELEWV-DGEIFANVWQ-TNKIVRIDPETGKVT  205 (262)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETT-SSEEEEECTTTCBEE
T ss_pred             ccccccceeEEE-CCEEEEEEcc-CCeEEEEECCCCcEE
Confidence               125567776 6765544445 889999999998865

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.95  E-value=6.3e-08  Score=89.56  Aligned_cols=182  Identities=8%  Similarity=0.013  Sum_probs=116.0

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCc-------------EEEEeCCCCe----eeE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGH-------------LRLWSFPKMK----PLL  153 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~-------------i~iwd~~~~~----~~~  153 (297)
                      .|+...+|++ |+.+++.+.....+.  ....++|+ ||+.|+.+..+..             |++|++.++.    .+.
T Consensus       150 ~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~  226 (693)
T 3iuj_A          150 AGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF  226 (693)
T ss_dssp             SSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE
T ss_pred             CCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE
Confidence            4555578999 999998765432111  12478899 9999998887743             9999987654    233


Q ss_pred             Eecc-ccCCeeEEEEccCCCEEEEEeC----CCcEEEEEcCCCc-eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEE
Q psy3337         154 HIEA-HSKEIDDVDFSISGEQIVSIAK----DGKAFVWNSKNGS-LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF  227 (297)
Q Consensus       154 ~~~~-~~~~v~~~~~sp~~~~l~s~~~----d~~v~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  227 (297)
                      .... |...+.++.|+|||++|+....    +..|++||+.++. ....+..+...  ...        . +++++..|+
T Consensus       227 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~--~~~--------~-~~~~g~~l~  295 (693)
T 3iuj_A          227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA--DVS--------L-VDNKGSTLY  295 (693)
T ss_dssp             SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS--CEE--------E-EEEETTEEE
T ss_pred             ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc--eEE--------E-EeccCCEEE
Confidence            3333 4456788999999998865432    3589999997663 33444333211  111        1 355666666


Q ss_pred             EeccCcccccCCCCeEEEEeCCCCce--EEEeccC-CCeEEEEEcCCCCEEEEEecCCC--eEEEEEeCCc
Q psy3337         228 TLANPLAQNKRGISYVQQWDVDSGRL--RLAREMK-ESLSALAVRDDGRFVAVGTMFTG--SVFVYIAFSL  293 (297)
Q Consensus       228 ~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg--~i~vwd~~~~  293 (297)
                      ..++    .+...+.|..+|+.++..  ...+..+ ..+.  .|++++++|+.....++  .|++||+..+
T Consensus       296 ~~t~----~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          296 LLTN----RDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEEC----TTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEEC----CCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            5544    122357899999988654  2333333 3354  89999998877765144  6888888654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.91  E-value=4.1e-07  Score=78.25  Aligned_cols=187  Identities=9%  Similarity=0.023  Sum_probs=123.4

Q ss_pred             CceEEEEeeC-----CCeEEEEecCC-CCcEEEEEE-----------e--cCCCEEE-EEcCCCcEEEEeCCCC----ee
Q psy3337          96 EKNLRFGFKT-----FDSVQTVFAGS-ESLQRVVRL-----------S--RNGDLMV-TGGTDGHLRLWSFPKM----KP  151 (297)
Q Consensus        96 d~~i~~~~~~-----~~~~~~~~~~h-~~~v~~~~~-----------s--~~g~~l~-s~~~d~~i~iwd~~~~----~~  151 (297)
                      |....||+..     ++.+..+...+ ........|           +  +++++|+ ++..++.|+++|+.+.    +.
T Consensus        43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~  122 (462)
T 2ece_A           43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKI  122 (462)
T ss_dssp             CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEE
T ss_pred             CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCcee
Confidence            4334447766     77777776222 223444455           6  7777665 5667889999998644    55


Q ss_pred             eEEec------c-ccCCeeEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeecc-CCCCceEEEEeeeeeee
Q psy3337         152 LLHIE------A-HSKEIDDVDFSISGEQIVSIAKD------GKAFVWNSKNGSLSKELKWN-TPDNIKYLFKRCRYGLV  217 (297)
Q Consensus       152 ~~~~~------~-~~~~v~~~~~sp~~~~l~s~~~d------~~v~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  217 (297)
                      ...+.      . ....-..+...|+| +++++..+      +.|.++|..+++.+.++... .+....+        .+
T Consensus       123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y--------d~  193 (462)
T 2ece_A          123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY--------DF  193 (462)
T ss_dssp             EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC--------CE
T ss_pred             eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc--------eE
Confidence            55552      1 11245677889999 76666555      78999999999998887633 2221111        25


Q ss_pred             eeCCCCeEEEEeccC-----------cccccCCCCeEEEEeCCCCceEEEeccCC---CeEEEEE--cCCCCEEEEEec-
Q psy3337         218 EDSPKRSRLFTLANP-----------LAQNKRGISYVQQWDVDSGRLRLAREMKE---SLSALAV--RDDGRFVAVGTM-  280 (297)
Q Consensus       218 ~~s~~~~~l~~~~~~-----------~~~~g~~d~~i~~wd~~~~~~~~~~~~~~---~v~~~~~--s~dg~~l~~~~~-  280 (297)
                      .|+|+++.+++....           ..+.+....+|.+||+.+++.+..+....   ....+.|  +|+|+++.++++ 
T Consensus       194 ~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~  273 (462)
T 2ece_A          194 WWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVV  273 (462)
T ss_dssp             EEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEE
T ss_pred             EECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEee
Confidence            579999988887420           00001346899999999998888887642   2566656  999999888774 


Q ss_pred             ----CCCeEEEEEeC
Q psy3337         281 ----FTGSVFVYIAF  291 (297)
Q Consensus       281 ----~dg~i~vwd~~  291 (297)
                          .+++|.+|...
T Consensus       274 ~~~~Lss~V~v~~~d  288 (462)
T 2ece_A          274 SLKDLSSSIWLWFYE  288 (462)
T ss_dssp             ETTTCCEEEEEEEEE
T ss_pred             eccCCCceEEEEEec
Confidence                48889776543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.90  E-value=2.9e-07  Score=73.62  Aligned_cols=172  Identities=12%  Similarity=-0.008  Sum_probs=116.5

Q ss_pred             CcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEE
Q psy3337          88 ILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        88 ~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  165 (297)
                      .|-.+.+.++.|+. |+.+++.+..+. .....-..+++  ++ +..+....++.+.+||..+.+.+.++... ..-..+
T Consensus        66 ~Ly~stG~~g~v~~iD~~Tgkv~~~~l-~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGL  141 (268)
T 3nok_A           66 HFFESTGHQGTLRQLSLESAQPVWMER-LGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGL  141 (268)
T ss_dssp             EEEEEETTTTEEEECCSSCSSCSEEEE-CTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCE
T ss_pred             EEEEEcCCCCEEEEEECCCCcEEeEEC-CCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEE
Confidence            44557777778988 999999888773 44333233444  44 44445557889999999999999888743 222344


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      +  +++..|+.+..++.|.++|..+.+.+..+....... .    ....+.+.|. +|...+....        +..|.+
T Consensus       142 t--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-~----v~~lNeLe~~-dG~lyanvw~--------s~~I~v  205 (268)
T 3nok_A          142 C--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-P----VELINELECA-NGVIYANIWH--------SSDVLE  205 (268)
T ss_dssp             E--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE-E----CCCEEEEEEE-TTEEEEEETT--------CSEEEE
T ss_pred             e--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-c----cccccccEEe-CCEEEEEECC--------CCeEEE
Confidence            4  567888877778999999999998887775432110 0    0112235555 6764544333        779999


Q ss_pred             EeCCCCceEEEeccC--------------CCeEEEEEcCCCCEEEEEe
Q psy3337         246 WDVDSGRLRLAREMK--------------ESLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       246 wd~~~~~~~~~~~~~--------------~~v~~~~~s~dg~~l~~~~  279 (297)
                      .|..+++.+..+...              ...+.++|+|+++.|++.+
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            999999998876532              1278999999876665555

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.90  E-value=8.3e-08  Score=81.00  Aligned_cols=163  Identities=9%  Similarity=0.088  Sum_probs=105.6

Q ss_pred             CcEEEEEEecCCCEEEEEc--CCCcEEEEeCCCCeeeEEec-------cccCCeeEEEEccCCCEEEEEeC-----CCcE
Q psy3337         118 SLQRVVRLSRNGDLMVTGG--TDGHLRLWSFPKMKPLLHIE-------AHSKEIDDVDFSISGEQIVSIAK-----DGKA  183 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~-----d~~v  183 (297)
                      .....++++|+|+.+++..  .++.++||.+.+++. ..+.       .|-..+.+++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5678999999999988863  234245555445543 3222       24467999999999886665433     5789


Q ss_pred             EEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC---
Q psy3337         184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK---  260 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~---  260 (297)
                      .+||+.+++.+..+..+.....    .......+++++++..++....    ++..++.|.+||+.+++..+.+..|   
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~----~~~~~~~v~vd~~~g~~yvtd~----~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITL----SNSFVNDLAVDLIHNFVYISDP----APDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSC----TTCCCCEEEEETTTTEEEEEEC----CSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             EEEECCCCeEEEEEECChhhcc----cccccceEEEecCCCEEEEEcC----ccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence            9999999987777654321110    0012345778876544444321    0113689999999888776655331   


Q ss_pred             ---------------------------CCeEEEEEcCCCCEEEEEecCCC-eEEEEEe
Q psy3337         261 ---------------------------ESLSALAVRDDGRFVAVGTMFTG-SVFVYIA  290 (297)
Q Consensus       261 ---------------------------~~v~~~~~s~dg~~l~~~~~~dg-~i~vwd~  290 (297)
                                                 ..+..++|+|||+.|+++.. ++ .++.++.
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~-~~~~l~~~~~  224 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM-HSTSMYRIKS  224 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES-SCSEEEEEEH
T ss_pred             cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC-CCCeEEEEEH
Confidence                                       12588999999999988877 55 5555553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.89  E-value=1.3e-07  Score=79.76  Aligned_cols=172  Identities=9%  Similarity=0.032  Sum_probs=111.1

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcC-----CCcEEEEeCCCCeeeEEeccc------cCCeeEEEEccCCCEE-EEEe---C
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGT-----DGHLRLWSFPKMKPLLHIEAH------SKEIDDVDFSISGEQI-VSIA---K  179 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l-~s~~---~  179 (297)
                      +|...+..++++++++++++-..     +..|.+||+.+++.+..+...      ...+..++++|++..+ ++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45567889999999876665433     578999999998876655432      2356899999865454 4444   5


Q ss_pred             CCcEEEEEcCCCceeeeeeccC---CCCceEEE----------------EeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         180 DGKAFVWNSKNGSLSKELKWNT---PDNIKYLF----------------KRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       180 d~~v~lwd~~~~~~~~~~~~~~---~~~~~~~~----------------~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      ++.|.+||+.+++....+..|.   +....+.+                .......++++|+++.|+....       ..
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~-------~~  216 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM-------HS  216 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES-------SC
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC-------CC
Confidence            7899999998887766554321   10000100                0112356899999998888654       13


Q ss_pred             CeEEEEeCC---CCc-----e---EEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         241 SYVQQWDVD---SGR-----L---RLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       241 ~~i~~wd~~---~~~-----~---~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ..|+.++..   .+.     .   +..+........++++++|.++++... ++.|.+||..+++
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~-~~~V~~~d~~~G~  280 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA-HSAIGVITSADRA  280 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG-GTEEEEEETTTTE
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC-CCeEEEEECCCCC
Confidence            366666532   111     0   111111123667999999998888888 9999999985554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.88  E-value=4.7e-07  Score=72.34  Aligned_cols=172  Identities=8%  Similarity=0.053  Sum_probs=114.5

Q ss_pred             CCCCCCCc--eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEE-cCCCcEEEEeCCCCeeeEEeccccCCeeEE
Q psy3337          90 NSIDSKEK--NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG-GTDGHLRLWSFPKMKPLLHIEAHSKEIDDV  165 (297)
Q Consensus        90 ~~~~~~d~--~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  165 (297)
                      -.+.+.++  .|+. |+.+++.+..+..+.  ......+.++++.|... ..++.+.+||..+.+.+.++....   ...
T Consensus        56 yestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~  130 (262)
T 3nol_A           56 YESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGW  130 (262)
T ss_dssp             EEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCC
T ss_pred             EEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---Cce
Confidence            44444443  7887 999999998886322  23343344445555544 458899999999999998887432   223


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      .+.+++..|+.+..++.|.++|..+.+.+..+......  ..   ....+.+.+. +|...+....        +..|.+
T Consensus       131 glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g--~~---~~~lNELe~~-~G~lyan~w~--------~~~I~v  196 (262)
T 3nol_A          131 GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG--EE---LPELNELEWV-DGEIFANVWQ--------TNKIVR  196 (262)
T ss_dssp             CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT--EE---CCCEEEEEEE-TTEEEEEETT--------SSEEEE
T ss_pred             EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC--cc---ccccceeEEE-CCEEEEEEcc--------CCeEEE
Confidence            34457777777666788999999999888776542100  00   0112234554 6765544333        779999


Q ss_pred             EeCCCCceEEEeccC-------------CCeEEEEEcCCCCEEEEEec
Q psy3337         246 WDVDSGRLRLAREMK-------------ESLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       246 wd~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~l~~~~~  280 (297)
                      .|..+++.+..+...             ...+.++|+|+++.|++.+.
T Consensus       197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            999999998887542             12689999999888777763

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.87  E-value=1e-07  Score=82.42  Aligned_cols=112  Identities=7%  Similarity=-0.022  Sum_probs=82.2

Q ss_pred             CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeeccCCCCceEE
Q psy3337         139 GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------KDGKAFVWNSKNGSLSKELKWNTPDNIKYL  208 (297)
Q Consensus       139 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~  208 (297)
                      +.|.++|..+++.+..+..-..+  .+.++||+++|+++.          .++.|.++|..+++.+..+....+.  .+.
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~--r~~  174 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP--RFL  174 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--CCC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc--ccc
Confidence            68999999999999888754444  899999999888775          3678999999999988877542000  000


Q ss_pred             EEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC
Q psy3337         209 FKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE  261 (297)
Q Consensus       209 ~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~  261 (297)
                       ....-..+.++|||++++....      ..++.|.++|+.+++.+..+....
T Consensus       175 -~g~~P~~~~~spDGk~lyV~n~------~~~~~VsVID~~t~kvv~~I~v~g  220 (426)
T 3c75_H          175 -VGTYQWMNALTPDNKNLLFYQF------SPAPAVGVVDLEGKTFDRMLDVPD  220 (426)
T ss_dssp             -BSCCGGGSEECTTSSEEEEEEC------SSSCEEEEEETTTTEEEEEEECCS
T ss_pred             -cCCCcceEEEcCCCCEEEEEec------CCCCeEEEEECCCCeEEEEEEcCC
Confidence             0000113678999999998653      125789999999999988887543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.83  E-value=5.5e-08  Score=86.43  Aligned_cols=186  Identities=5%  Similarity=-0.017  Sum_probs=122.6

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC-----------------------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG-----------------------------  139 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~-----------------------------  139 (297)
                      ......++.+.+ |..+.+.+.++..+-.  -..++++|+|+++++.+.+.                             
T Consensus       168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg~--pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v  245 (595)
T 1fwx_A          168 EDVANYVNVFTAVDADKWEVAWQVLVSGN--LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  245 (595)
T ss_dssp             TCGGGEEEEEEEEETTTTEEEEEEEESSC--CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             ccccccCceEEEEECCCCeEEEEEEeCCC--ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence            344566778888 9999888888773332  24688999999988877543                             


Q ss_pred             ---------cEEEEeCCC--Cee-eEEeccccCCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceee--------eee
Q psy3337         140 ---------HLRLWSFPK--MKP-LLHIEAHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLSK--------ELK  198 (297)
Q Consensus       140 ---------~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~~--------~~~  198 (297)
                               .|.+.|..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+...        ...
T Consensus       246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          246 AAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             HHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             cCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence                     466777666  444 344432 23567899999999887766 57899999998542100        000


Q ss_pred             ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC----------CceEEEeccCCCeE----
Q psy3337         199 WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS----------GRLRLAREMKESLS----  264 (297)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~----------~~~~~~~~~~~~v~----  264 (297)
                      ...+.+       ..-..++|+|+| ++++...       .++.|.+||+..          .+.+..+..+-.+-    
T Consensus       325 ~~v~vG-------~gP~h~aF~~dG-~aY~t~~-------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~  389 (595)
T 1fwx_A          325 AEPELG-------LGPLHTAFDGRG-NAYTSLF-------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKT  389 (595)
T ss_dssp             ECCBCC-------SCEEEEEECTTS-EEEEEET-------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEE
T ss_pred             EEcCCC-------CCcceEEECCCC-eEEEEEe-------cCCcEEEEEhhHhhhhhcccccceeEEEeeccccccccee
Confidence            010111       011237899999 6666543       489999999987          56777877765532    


Q ss_pred             --EEEEcCCCCEEEEEecCC-CeE-----------EEEEeCCc
Q psy3337         265 --ALAVRDDGRFVAVGTMFT-GSV-----------FVYIAFSL  293 (297)
Q Consensus       265 --~~~~s~dg~~l~~~~~~d-g~i-----------~vwd~~~~  293 (297)
                        .+.++|||++|++...+. .++           .++|+..+
T Consensus       390 ~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          390 VMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             TTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             ccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence              224579999999987643 233           78888543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.81  E-value=1.7e-06  Score=68.47  Aligned_cols=164  Identities=12%  Similarity=0.130  Sum_probs=110.3

Q ss_pred             eEEEEecCCCCcEEEEEEecCCCEEEEEcCC--CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEE-EEeCCCcEE
Q psy3337         108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTD--GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIV-SIAKDGKAF  184 (297)
Q Consensus       108 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~d~~v~  184 (297)
                      .+.++..........+.|++ +.++.+.+.+  ..|+.+|+.+++.+..+.-.. ........+.+..|+ ..-.++.+.
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEE
Confidence            45555434456677999986 5566666665  489999999999887775332 222222223344444 444688999


Q ss_pred             EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC----
Q psy3337         185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK----  260 (297)
Q Consensus       185 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~----  260 (297)
                      +||..+.+.+.++.... .+            ..+.+++..|+....        ++.|.++|..+.+.+..+...    
T Consensus        89 v~D~~tl~~~~ti~~~~-~G------------wglt~dg~~L~vSdg--------s~~l~~iDp~t~~~~~~I~V~~~g~  147 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPG-EG------------WALTSDDSHLYMSDG--------TAVIRKLDPDTLQQVGSIKVTAGGR  147 (243)
T ss_dssp             EEETTTTEEEEEEECSS-CC------------CEEEECSSCEEEECS--------SSEEEEECTTTCCEEEEEECEETTE
T ss_pred             EEECCcCcEEEEEeCCC-Cc------------eEEeeCCCEEEEECC--------CCeEEEEeCCCCeEEEEEEEccCCc
Confidence            99999999998886532 11            223456666666433        778999999999888877653    


Q ss_pred             --CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         261 --ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       261 --~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                        ..++.+.|. +|+..+..-. +..|.+.|..+++.+
T Consensus       148 ~~~~lNeLe~~-~G~lyanvw~-s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          148 PLDNLNELEWV-NGELLANVWL-TSRIARIDPASGKVV  183 (243)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETT-TTEEEEECTTTCBEE
T ss_pred             ccccceeeEEe-CCEEEEEECC-CCeEEEEECCCCCEE
Confidence              225666665 6665544445 789999999998865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=4.6e-06  Score=66.01  Aligned_cols=165  Identities=10%  Similarity=-0.028  Sum_probs=109.5

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEE
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI  174 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  174 (297)
                      ..|+. |+.+++.+..+.....  .......+.++.| .....++.+.+||..+.+.+.++.... .-..++  +++..|
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~--~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L  117 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPP--YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHL  117 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTT--CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCE
T ss_pred             ceEEEEECCCCCEEEEEeCCCC--cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEE
Confidence            47887 9999999988862222  2233333334444 445568899999999999998887433 223444  567777


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE
Q psy3337         175 VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR  254 (297)
Q Consensus       175 ~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~  254 (297)
                      +.+..++.|.++|..+.+.+..+......   ..  ....+.+.+. +|...+.+..        +..|.+.|..+|+.+
T Consensus       118 ~vSdgs~~l~~iDp~t~~~~~~I~V~~~g---~~--~~~lNeLe~~-~G~lyanvw~--------s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          118 YMSDGTAVIRKLDPDTLQQVGSIKVTAGG---RP--LDNLNELEWV-NGELLANVWL--------TSRIARIDPASGKVV  183 (243)
T ss_dssp             EEECSSSEEEEECTTTCCEEEEEECEETT---EE--CCCEEEEEEE-TTEEEEEETT--------TTEEEEECTTTCBEE
T ss_pred             EEECCCCeEEEEeCCCCeEEEEEEEccCC---cc--cccceeeEEe-CCEEEEEECC--------CCeEEEEECCCCCEE
Confidence            77777899999999999888777543210   00  0111234444 5665544333        679999999999998


Q ss_pred             EEeccC-------------C-CeEEEEEcCCCCEEEEEec
Q psy3337         255 LAREMK-------------E-SLSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       255 ~~~~~~-------------~-~v~~~~~s~dg~~l~~~~~  280 (297)
                      ..+...             . ..+.++++|+++.|++.+.
T Consensus       184 ~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          184 AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            876522             1 2789999998777766663

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.75  E-value=6e-07  Score=82.59  Aligned_cols=200  Identities=14%  Similarity=0.162  Sum_probs=131.8

Q ss_pred             CceEEE-EeeCCCeEEEEec--CCCC----------------------------cEEEEEEecCCCEEEEEcCCC-----
Q psy3337          96 EKNLRF-GFKTFDSVQTVFA--GSES----------------------------LQRVVRLSRNGDLMVTGGTDG-----  139 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~--~h~~----------------------------~v~~~~~s~~g~~l~s~~~d~-----  139 (297)
                      ++.|+. |..+|+.+-.+..  +...                            ....++++|+...++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            577887 9999998877751  1100                            012468888888888887766     


Q ss_pred             --------------cEEEEeCCCCeeeEEecc--cc-------CCeeEEEEccCCC---EEEEEeCCCcEEEEEcCCCce
Q psy3337         140 --------------HLRLWSFPKMKPLLHIEA--HS-------KEIDDVDFSISGE---QIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       140 --------------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~sp~~~---~l~s~~~d~~v~lwd~~~~~~  193 (297)
                                    .|..+|..+++.+..++.  |.       .+.....+..+++   .++.++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          399999999999887764  22       2222223334665   688889999999999999998


Q ss_pred             eeeeeccCC---------------------CCceEEEEee-----eeeeeeeCCCCeEEEEeccCc--------------
Q psy3337         194 SKELKWNTP---------------------DNIKYLFKRC-----RYGLVEDSPKRSRLFTLANPL--------------  233 (297)
Q Consensus       194 ~~~~~~~~~---------------------~~~~~~~~~~-----~~~~~~~s~~~~~l~~~~~~~--------------  233 (297)
                      +........                     ..........     .+..++++|+...++......              
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            754432210                     0000011111     112367788877766532210              


Q ss_pred             -------------cc-ccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         234 -------------AQ-NKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       234 -------------~~-~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                                   .. ....++.|..||+.+++.+-.......+....+...+.+|++++. ||.|++||..+++.+
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~-dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA-AGQMHAYSADKGEAL  492 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC-cccchhhhhhcChhh
Confidence                         00 223458999999999999877766555444455567888999998 999999999999865

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.70  E-value=2.1e-05  Score=63.52  Aligned_cols=183  Identities=9%  Similarity=-0.060  Sum_probs=109.3

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      ...+.|.. ++........+. ........++++|++. .+++-...+.|.++++........+.........++++|++
T Consensus        55 ~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~  133 (267)
T 1npe_A           55 ISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (267)
T ss_dssp             TTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             CCCCEEEEEecCCCCcEEEEE-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence            34456665 665544332222 2224568999999754 44555667889999986433222222222457899999976


Q ss_pred             CEEEEEeC---CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         172 EQIVSIAK---DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       172 ~~l~s~~~---d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      ..|+.+..   .+.|..+++. +.....+... ..  .      .-..++++|++..|+.+..       ..+.|.++|+
T Consensus       134 g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~-~~--~------~P~gia~d~~~~~lyv~d~-------~~~~I~~~~~  196 (267)
T 1npe_A          134 GNLYWTDWNRDNPKIETSHMD-GTNRRILAQD-NL--G------LPNGLTFDAFSSQLCWVDA-------GTHRAECLNP  196 (267)
T ss_dssp             TEEEEEECCSSSCEEEEEETT-SCCCEEEECT-TC--S------CEEEEEEETTTTEEEEEET-------TTTEEEEEET
T ss_pred             CEEEEEECCCCCcEEEEEecC-CCCcEEEEEC-CC--C------CCcEEEEcCCCCEEEEEEC-------CCCEEEEEec
Confidence            66655543   3678888875 3322222111 00  0      1124778998877776543       3579999999


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ........+........+++.  +..|+++....+.|.++|..+++.+
T Consensus       197 ~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          197 AQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             TEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce
Confidence            865444444433336677654  5566655542789999999887754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.65  E-value=7.3e-06  Score=69.73  Aligned_cols=185  Identities=9%  Similarity=0.060  Sum_probs=111.4

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCC--------CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCee
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGS--------ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID  163 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h--------~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  163 (297)
                      ++.++.|.. |..+|+.+-......        ...+.+. ...++..++.++.++.|..+|..+++.+..+........
T Consensus        59 ~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~  137 (376)
T 3q7m_A           59 ADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS  137 (376)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             EcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc
Confidence            445666766 888998876665221        2222222 222456788888999999999999998877654433222


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         164 DVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      .....  +..++.++.++.|..+|..+|+.+..+....+..   ...  ........ ++ .++.        +..++.|
T Consensus       138 ~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~---~~~--~~~~~~~~-~~-~v~~--------g~~~g~l  200 (376)
T 3q7m_A          138 RPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL---SLR--GESAPTTA-FG-AAVV--------GGDNGRV  200 (376)
T ss_dssp             CCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC--------C--CCCCCEEE-TT-EEEE--------CCTTTEE
T ss_pred             CCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce---eec--CCCCcEEE-CC-EEEE--------EcCCCEE
Confidence            22222  3477788899999999999998887765433210   000  00001111 22 3444        4458899


Q ss_pred             EEEeCCCCceEEEeccCCC--------eEEEEEcC--CCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         244 QQWDVDSGRLRLAREMKES--------LSALAVRD--DGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~--------v~~~~~s~--dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..+|..+|+.+........        +..+...|  .+..+++++. ++.+..+|..+++.+
T Consensus       201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~g~l~~~d~~tG~~~  262 (376)
T 3q7m_A          201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-NGNLTALDLRSGQIM  262 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-TSCEEEEETTTCCEE
T ss_pred             EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-CcEEEEEECCCCcEE
Confidence            9999999988766543211        00011111  3456667777 888888888887653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.63  E-value=2.5e-05  Score=63.11  Aligned_cols=161  Identities=10%  Similarity=-0.039  Sum_probs=100.9

Q ss_pred             CcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEE-eCCCcEEEEEcCCCceee
Q psy3337         118 SLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSI-AKDGKAFVWNSKNGSLSK  195 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~d~~v~lwd~~~~~~~~  195 (297)
                      ..+..++|+++++.| ++-..++.|..+++........+.........++++|++..|+.+ ...+.|.++++.... ..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence            356799999976544 555567899999987654433333233467899999976555544 456789999985432 22


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-CCCeEEEEEcCCCCE
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-KESLSALAVRDDGRF  274 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~dg~~  274 (297)
                      .+.... .        ..-..++++|++..|+.+..     +...+.|..+++........... ......++++|++..
T Consensus       115 ~~~~~~-~--------~~P~~i~vd~~~g~lyv~~~-----~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~  180 (267)
T 1npe_A          115 VLFDTG-L--------VNPRGIVTDPVRGNLYWTDW-----NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ  180 (267)
T ss_dssp             EEECSS-C--------SSEEEEEEETTTTEEEEEEC-----CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred             EEEECC-C--------CCccEEEEeeCCCEEEEEEC-----CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCE
Confidence            221110 0        11124778997666666543     22246888888864322222222 233889999998887


Q ss_pred             EEEEecCCCeEEEEEeCCc
Q psy3337         275 VAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       275 l~~~~~~dg~i~vwd~~~~  293 (297)
                      |..+....+.|.++|+...
T Consensus       181 lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          181 LCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             EEEEETTTTEEEEEETTEE
T ss_pred             EEEEECCCCEEEEEecCCC
Confidence            7666653789999998654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.62  E-value=3.4e-06  Score=77.68  Aligned_cols=161  Identities=11%  Similarity=0.058  Sum_probs=108.2

Q ss_pred             eEEE-EeeCCCeEEEEecC-CC-------CcEEEEEEecCC---CEEEEEcCCCcEEEEeCCCCeeeEEecccc------
Q psy3337          98 NLRF-GFKTFDSVQTVFAG-SE-------SLQRVVRLSRNG---DLMVTGGTDGHLRLWSFPKMKPLLHIEAHS------  159 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~-h~-------~~v~~~~~s~~g---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------  159 (297)
                      +|.. |..+|+.+-.+... |.       .....+....+|   ..++.++.+|.++++|..+++.+..+....      
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            3555 88999988777622 31       122233444577   689999999999999999999876654211      


Q ss_pred             -----CCe------------------------eEEEEccCCCEEEEEeC-------------------------------
Q psy3337         160 -----KEI------------------------DDVDFSISGEQIVSIAK-------------------------------  179 (297)
Q Consensus       160 -----~~v------------------------~~~~~sp~~~~l~s~~~-------------------------------  179 (297)
                           ..+                        ..++|+|+..++++...                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                 001                        15788998888877543                               


Q ss_pred             ------------CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         180 ------------DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       180 ------------d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                                  .+.|..||+.+++.+..+....+..           ...+..++..++.        ++.++.+++||
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-----------~g~~~~~g~~v~~--------g~~dg~l~a~D  504 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN-----------GGTLTTAGNVVFQ--------GTADGRLVAYH  504 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC-----------CCEEEETTTEEEE--------ECTTSEEEEEE
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCc-----------CcceEeCCCEEEE--------ECCCCcEEEEE
Confidence                        2679999999998877765433211           0112334555665        45599999999


Q ss_pred             CCCCceEEEeccCCC--eEEEEEcCCCCEEEE
Q psy3337         248 VDSGRLRLAREMKES--LSALAVRDDGRFVAV  277 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~  277 (297)
                      ..+|+++..+.....  ..-+.|.++|+.+++
T Consensus       505 ~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          505 AATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            999999998876543  345666788875544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.55  E-value=1.6e-05  Score=67.55  Aligned_cols=185  Identities=12%  Similarity=0.069  Sum_probs=113.4

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCe-----eEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI-----DDV  165 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~  165 (297)
                      .++.++.|.. |..+|+.+-... ............  +..++.++.++.|..+|..+++.+..+.......     ...
T Consensus       108 v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~  184 (376)
T 3q7m_A          108 IGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP  184 (376)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC
T ss_pred             EEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc
Confidence            3455677776 889998876665 222111111222  4478888899999999999999887765432211     122


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC--CCeEEEEeccCcccccCCCCeE
Q psy3337         166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP--KRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       166 ~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      ...  +..++.++.++.+..+|..+|+.+.......+.+..- .  ..+..+...|  .+..++.        ++.++.|
T Consensus       185 ~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~--~~~~~~~~~p~~~~~~v~~--------~~~~g~l  251 (376)
T 3q7m_A          185 TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE-I--DRLSDVDTTPVVVNGVVFA--------LAYNGNL  251 (376)
T ss_dssp             EEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEE--------ECTTSCE
T ss_pred             EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcc-c--ccccccCCCcEEECCEEEE--------EecCcEE
Confidence            222  3467778889999999999998877665433211000 0  0000000011  1234444        3348899


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..+|..+|+.+....... ...+..  ++..|++++. ++.|..+|..+++.+
T Consensus       252 ~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~~~~-~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          252 TALDLRSGQIMWKRELGS-VNDFIV--DGNRIYLVDQ-NDRVMALTIDGGVTL  300 (376)
T ss_dssp             EEEETTTCCEEEEECCCC-EEEEEE--ETTEEEEEET-TCCEEEEETTTCCEE
T ss_pred             EEEECCCCcEEeeccCCC-CCCceE--ECCEEEEEcC-CCeEEEEECCCCcEE
Confidence            999999998886655332 444444  4677888888 999999999988753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.54  E-value=8.6e-06  Score=73.45  Aligned_cols=173  Identities=13%  Similarity=0.135  Sum_probs=109.2

Q ss_pred             EEEecCCCEEEEEcCC----------------CcEEEEeCCCCeeeEEeccc--cC----CeeE---EEEccCCC---EE
Q psy3337         123 VRLSRNGDLMVTGGTD----------------GHLRLWSFPKMKPLLHIEAH--SK----EIDD---VDFSISGE---QI  174 (297)
Q Consensus       123 ~~~s~~g~~l~s~~~d----------------~~i~iwd~~~~~~~~~~~~~--~~----~v~~---~~~sp~~~---~l  174 (297)
                      +++.++...++.+..+                +.|..+|..+++.+..++..  ..    .+..   +...++|+   .+
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            5667766666666532                35999999999988777532  11    1111   22224674   57


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeccC-C---------CCc--------------eEEEEee-----eeeeeeeCCCCeE
Q psy3337         175 VSIAKDGKAFVWNSKNGSLSKELKWNT-P---------DNI--------------KYLFKRC-----RYGLVEDSPKRSR  225 (297)
Q Consensus       175 ~s~~~d~~v~lwd~~~~~~~~~~~~~~-~---------~~~--------------~~~~~~~-----~~~~~~~s~~~~~  225 (297)
                      +.++.+|.++++|..+|+.+..+.... .         .+.              .......     .+..++++|+...
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~  399 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT  399 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred             EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence            788899999999999998877654321 0         000              0001100     1134678888777


Q ss_pred             EEEeccCc---------------cccc--------------CCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEE
Q psy3337         226 LFTLANPL---------------AQNK--------------RGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVA  276 (297)
Q Consensus       226 l~~~~~~~---------------~~~g--------------~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  276 (297)
                      ++......               ...|              ..++.|..||+.+++.+-.+.....+.+..+...+..++
T Consensus       400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~  479 (571)
T 2ad6_A          400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVW  479 (571)
T ss_dssp             EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEE
T ss_pred             EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEE
Confidence            77654310               0001              246899999999999887776544433333344566777


Q ss_pred             EEecCCCeEEEEEeCCceec
Q psy3337         277 VGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +++. ||.|+.||..+++.+
T Consensus       480 ~g~~-dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          480 YATL-DGYLKALDNKDGKEL  498 (571)
T ss_dssp             EECT-TSEEEEEETTTCCEE
T ss_pred             EEcC-CCeEEEEECCCCCEE
Confidence            7888 999999999999865

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.52  E-value=6.7e-07  Score=75.95  Aligned_cols=126  Identities=6%  Similarity=-0.078  Sum_probs=88.9

Q ss_pred             cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeecc---------
Q psy3337         140 HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------KDGKAFVWNSKNGSLSKELKWN---------  200 (297)
Q Consensus       140 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d~~v~lwd~~~~~~~~~~~~~---------  200 (297)
                      .|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++.+.++..+         
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999999888755555  799999999988886          3688999999999999888643         


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE--EeCCCCceEEEeccCCCeEEEEEcCCCC-EEEE
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ--WDVDSGRLRLAREMKESLSALAVRDDGR-FVAV  277 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~--wd~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~  277 (297)
                      .|.            .+.++|||++++.+..      .....+.+  +|+.+   +..+.....   ..+.|+|. .+++
T Consensus       125 ~P~------------~ia~SpDGk~lyVan~------~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~  180 (368)
T 1mda_H          125 RVH------------IIGNCASSACLLFFLF------GSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYL  180 (368)
T ss_dssp             CTT------------SEEECTTSSCEEEEEC------SSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEEC
T ss_pred             Ccc------------eEEEcCCCCEEEEEcc------CCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEE
Confidence            233            2778999999998753      11356888  99877   344433221   12234443 3334


Q ss_pred             EecCCCeEEEEEeCC
Q psy3337         278 GTMFTGSVFVYIAFS  292 (297)
Q Consensus       278 ~~~~dg~i~vwd~~~  292 (297)
                      .+. ||.+.+.|+.+
T Consensus       181 ~~~-dg~~~~vd~~~  194 (368)
T 1mda_H          181 GSC-PASLAASDLAA  194 (368)
T ss_dssp             CCC-TTSCEEEECCS
T ss_pred             EcC-CCCEEEEECcc
Confidence            445 77777777665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.50  E-value=4.2e-06  Score=77.24  Aligned_cols=192  Identities=10%  Similarity=0.042  Sum_probs=118.8

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCC----------cE-EEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc--
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSES----------LQ-RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH--  158 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~----------~v-~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  158 (297)
                      ++.++.|.- |..+|+.+-.+. .+..          .+ ..+.+  ++..++.++.|+.|..+|..+|+.+..+...  
T Consensus        76 ~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~  152 (689)
T 1yiq_A           76 TGPFSVVYALDARDGRLIWKYD-PQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRAD  152 (689)
T ss_dssp             ECGGGCEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCSC
T ss_pred             EcCCCeEEEEECCCCceeEEEc-CCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeecCcCC
Confidence            344566666 889999887775 2211          00 11222  3567888899999999999999988777542  


Q ss_pred             cCCeeEEEEcc---CCCEEEEEe-----CCCcEEEEEcCCCceeeeeecc--CCCCc----eE---------------EE
Q psy3337         159 SKEIDDVDFSI---SGEQIVSIA-----KDGKAFVWNSKNGSLSKELKWN--TPDNI----KY---------------LF  209 (297)
Q Consensus       159 ~~~v~~~~~sp---~~~~l~s~~-----~d~~v~lwd~~~~~~~~~~~~~--~~~~~----~~---------------~~  209 (297)
                      ......+..+|   ++..++..+     .++.|+.||..+|+.+-.+...  .|...    .+               .-
T Consensus       153 ~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~  232 (689)
T 1yiq_A          153 HKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGG  232 (689)
T ss_dssp             TTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCE
T ss_pred             CCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCC
Confidence            11111122222   444443322     3789999999999988776521  11100    00               00


Q ss_pred             EeeeeeeeeeCCCCeEEEEeccCcccccCCCC-------------------eEEEEeCCCCceEEEecc--CC-------
Q psy3337         210 KRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS-------------------YVQQWDVDSGRLRLAREM--KE-------  261 (297)
Q Consensus       210 ~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~-------------------~i~~wd~~~~~~~~~~~~--~~-------  261 (297)
                      ....+..++++|+...++....        ++                   .|..||..+|+.+-.+..  +.       
T Consensus       233 g~~~w~~~~~d~~~~~vy~~~~--------~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          233 GGTAWDSFAYDPELNLLYIGVG--------NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             ECCCCSCEEEETTTTEEEEECC--------CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CCccccceeEcCCCCEEEEeCC--------CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence            1111234677888777777543        33                   499999999999877654  21       


Q ss_pred             -CeEEEEEcCCCC---EEEEEecCCCeEEEEEeCCceec
Q psy3337         262 -SLSALAVRDDGR---FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       262 -~v~~~~~s~dg~---~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       .+....+..+|+   .|+.++. +|.++++|..+|+.+
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPK-NGFFYVIDRATGELL  342 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEE
T ss_pred             CCcEEEeeccCCcEEEEEEEECC-CCeEEEEECCCCCEe
Confidence             122223333665   7888998 999999999999875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.50  E-value=2.2e-06  Score=79.93  Aligned_cols=158  Identities=8%  Similarity=0.070  Sum_probs=95.6

Q ss_pred             cEEEEEEe-cCCCEEEEEcC-C----CcEEEEeCCCC-eeeE-EeccccCCeeEEEEccCCCEEEEEeCC-----CcEEE
Q psy3337         119 LQRVVRLS-RNGDLMVTGGT-D----GHLRLWSFPKM-KPLL-HIEAHSKEIDDVDFSISGEQIVSIAKD-----GKAFV  185 (297)
Q Consensus       119 ~v~~~~~s-~~g~~l~s~~~-d----~~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~d-----~~v~l  185 (297)
                      .+...+|| |||++||.+.. +    ..|+++|+.++ +.+. .+.   .....+.|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99998885432 2    25999999988 6321 111   124578999999888776654     25778


Q ss_pred             EEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC--ce--EEEeccCC
Q psy3337         186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG--RL--RLAREMKE  261 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~--~~--~~~~~~~~  261 (297)
                      +++.++.....+....+.. .+.      ..+.|+|||++|+....     ......|+++|+.++  +.  ........
T Consensus       252 ~~lgt~~~~~~lv~~~~~~-~~~------~~~~~SpDg~~l~~~~~-----~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  319 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNP-LFS------AFMYKAADTNTLCIGSQ-----SPETAEVHLLDLRKGNAHNTLEIVRPREK  319 (751)
T ss_dssp             EETTSCGGGCEEEEECCCT-TCE------EEEEECTTSSEEEEEEE-----CSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred             EECCCCchhcEEEEecCCC-ceE------EEEEECCCCCEEEEEec-----CCCCceEEEEECCCCCCCceeEEeecCCC
Confidence            8887664221111111111 111      23678999999888664     334668999999875  33  33333333


Q ss_pred             C-eEEEEEcCCCCEEEEEecCC----CeEEEEEeCC
Q psy3337         262 S-LSALAVRDDGRFVAVGTMFT----GSVFVYIAFS  292 (297)
Q Consensus       262 ~-v~~~~~s~dg~~l~~~~~~d----g~i~vwd~~~  292 (297)
                      . ..++.|+.++.+++.... +    ..|.++|+.+
T Consensus       320 ~~~~s~~~~~g~~l~~~t~~-~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          320 GVRYDVQMHGTSHLVILTNE-GGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TCCEEEEEETTTEEEEEECT-TTCTTCEEEEEETTS
T ss_pred             CceEEEeeeeCCEEEEEeCC-CCCCCcEEEEEcCCC
Confidence            3 566665544444444443 3    3677777654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.47  E-value=2e-05  Score=71.17  Aligned_cols=157  Identities=15%  Similarity=0.080  Sum_probs=98.6

Q ss_pred             CcEEEEeCCCCeeeEEecc--ccC----CeeE-EEEc---cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeccCCC--
Q psy3337         139 GHLRLWSFPKMKPLLHIEA--HSK----EIDD-VDFS---ISGE---QIVSIAKDGKAFVWNSKNGSLSKELKWNTPD--  203 (297)
Q Consensus       139 ~~i~iwd~~~~~~~~~~~~--~~~----~v~~-~~~s---p~~~---~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~--  203 (297)
                      +.|..+|..+++.+..++.  |..    .+.. +.+.   .+|+   .++.++.+|.++++|..+|+.+..+......  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            5799999999999887753  321    1111 1222   4664   6788999999999999999988766543200  


Q ss_pred             ----------------------------CceEEEEeee-----eeeeeeCCCCeEEEEeccCcc---------------c
Q psy3337         204 ----------------------------NIKYLFKRCR-----YGLVEDSPKRSRLFTLANPLA---------------Q  235 (297)
Q Consensus       204 ----------------------------~~~~~~~~~~-----~~~~~~s~~~~~l~~~~~~~~---------------~  235 (297)
                                                  ..........     +..++++|+...++.......               .
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                                        0000111110     124567777666665432100               0


Q ss_pred             c----------cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         236 N----------KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       236 ~----------g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .          ...++.|..||+.+++.+-.......+..-.+...+..++.++. ||.++.||..+|+.+
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~-dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTG-DGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECC-CCcEEEEECCCCCEE
Confidence            0          12468999999999998876655433322222235677888999 999999999999875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.46  E-value=1.1e-05  Score=67.10  Aligned_cols=171  Identities=10%  Similarity=0.027  Sum_probs=108.6

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      ++.++.+.. +.. ++...... .+...+.++...+++. |+.++.++.|..||.. ++.+..+......+.++.+.+++
T Consensus       113 ~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g  188 (330)
T 3hxj_A          113 TSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG  188 (330)
T ss_dssp             ECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC
T ss_pred             EecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC
Confidence            344555555 665 66655554 4444556667777776 6667788999999988 87777776556677888888888


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC
Q psy3337         172 EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG  251 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~  251 (297)
                      .+++. +  +.|..|| .+++.+..+.....          .+..+...+++...+.         +.++.|..+|. ++
T Consensus       189 ~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~----------~~~~~~~~~~g~l~v~---------t~~~gl~~~~~-~g  244 (330)
T 3hxj_A          189 TIYFG-S--DKVYAIN-PDGTEKWNFYAGYW----------TVTRPAISEDGTIYVT---------SLDGHLYAINP-DG  244 (330)
T ss_dssp             CEEEE-S--SSEEEEC-TTSCEEEEECCSSC----------CCSCCEECTTSCEEEE---------ETTTEEEEECT-TS
T ss_pred             EEEEE-e--CEEEEEC-CCCcEEEEEccCCc----------ceeceEECCCCeEEEE---------cCCCeEEEECC-CC
Confidence            75554 4  7899999 67766655443211          1223445667654433         23678888874 46


Q ss_pred             ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         252 RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       252 ~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +.+..+..... +.++.+.+++ .|.+++. +|.|..+|. +++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~-~ggl~~~d~-~g~  285 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSY-DGHLYAINP-DGT  285 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS-CEEEECT-TCEEEEECT-TSC
T ss_pred             CEeEEeeCCCCccccceEcCCC-eEEEecC-CCCEEEECC-CCc
Confidence            65555554443 4556665555 4566776 888888885 554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.45  E-value=2.3e-05  Score=70.89  Aligned_cols=200  Identities=13%  Similarity=0.131  Sum_probs=125.2

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCc------------------------------------E-EEEEEecCCCEEEEEcC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESL------------------------------------Q-RVVRLSRNGDLMVTGGT  137 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~------------------------------------v-~~~~~s~~g~~l~s~~~  137 (297)
                      ++.|+- |..+|+.+-.+.......                                    + ...++.++..+++.+..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            678887 999999887765221110                                    0 13456677777777765


Q ss_pred             C----------------CcEEEEeCCCCeeeEEeccccCC------e---eEEEEc-cCC---CEEEEEeCCCcEEEEEc
Q psy3337         138 D----------------GHLRLWSFPKMKPLLHIEAHSKE------I---DDVDFS-ISG---EQIVSIAKDGKAFVWNS  188 (297)
Q Consensus       138 d----------------~~i~iwd~~~~~~~~~~~~~~~~------v---~~~~~s-p~~---~~l~s~~~d~~v~lwd~  188 (297)
                      +                +.|..+|..+++.+..++.....      +   .-+... .+|   ..++.++.+|.++++|.
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence            5                37999999999988777643211      1   112222 467   46777889999999999


Q ss_pred             CCCceeeeeeccC----------CCC--------------ceEEEEe-----eeeeeeeeCCCCeEEEEeccC-------
Q psy3337         189 KNGSLSKELKWNT----------PDN--------------IKYLFKR-----CRYGLVEDSPKRSRLFTLANP-------  232 (297)
Q Consensus       189 ~~~~~~~~~~~~~----------~~~--------------~~~~~~~-----~~~~~~~~s~~~~~l~~~~~~-------  232 (297)
                      ++|+.+.......          ..+              .......     ..+..++++|+...++.....       
T Consensus       341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~  420 (599)
T 1w6s_A          341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (599)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence            9999887654221          000              0000000     112356778887777664321       


Q ss_pred             ----------cc------cc--cC------CCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEE
Q psy3337         233 ----------LA------QN--KR------GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       233 ----------~~------~~--g~------~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vw  288 (297)
                                .+      ..  .+      ..+.|..||+.+++.+-.......+.+-.+...+..++.++. ||.|+.|
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~-dg~l~A~  499 (599)
T 1w6s_A          421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTL-DGYLKAR  499 (599)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT-TSEEEEE
T ss_pred             ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECC-CCeEEEE
Confidence                      10      00  01      458999999999998877654332222222335677778998 9999999


Q ss_pred             EeCCceec
Q psy3337         289 IAFSLQMC  296 (297)
Q Consensus       289 d~~~~~~~  296 (297)
                      |..+|+.+
T Consensus       500 D~~tG~~l  507 (599)
T 1w6s_A          500 DSDTGDLL  507 (599)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCCEE
Confidence            99999875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.39  E-value=2.7e-05  Score=64.60  Aligned_cols=172  Identities=11%  Similarity=0.116  Sum_probs=110.3

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      ++.++.|.. +.. ++.+..+. .....+.++.+.+++..++ ++  +.|..+| .+++.+..+......+.++...+++
T Consensus       153 gt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g  226 (330)
T 3hxj_A          153 GSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG  226 (330)
T ss_dssp             ECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS
T ss_pred             EcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC
Confidence            344455555 666 66665655 4445566777777877544 44  7899999 7777777776666678889998887


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC
Q psy3337         172 EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG  251 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~  251 (297)
                      .+ ..++.++.|..+|. ++..+..+....+.          ...+...+++. |+.        ++.++.|..+|. ++
T Consensus       227 ~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~----------~~~~~~~~~g~-l~v--------~t~~ggl~~~d~-~g  284 (330)
T 3hxj_A          227 TI-YVTSLDGHLYAINP-DGTEKWRFKTGKRI----------ESSPVIGNTDT-IYF--------GSYDGHLYAINP-DG  284 (330)
T ss_dssp             CE-EEEETTTEEEEECT-TSCEEEEEECSSCC----------CSCCEECTTSC-EEE--------ECTTCEEEEECT-TS
T ss_pred             eE-EEEcCCCeEEEECC-CCCEeEEeeCCCCc----------cccceEcCCCe-EEE--------ecCCCCEEEECC-CC
Confidence            54 45567788888874 56555554432211          01123345554 444        334778999996 67


Q ss_pred             ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         252 RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       252 ~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +.+..+..... +.++...++|.+ ..++. +|.+++...+..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~-~G~~~~~~~~~~~  326 (330)
T 3hxj_A          285 TEKWNFETGSWIIATPVIDENGTI-YFGTR-NGKFYALFNLEHH  326 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTCCE-EEECT-TSCEEEEEC----
T ss_pred             cEEEEEEcCCccccceEEcCCCEE-EEEcC-CCeEEEEeccccc
Confidence            77766665544 778888788764 55777 9999988765443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.38  E-value=3.9e-05  Score=63.80  Aligned_cols=165  Identities=12%  Similarity=0.093  Sum_probs=101.7

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecc--------------------ccCCeeEEEEcc-CCCEEEEEe
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA--------------------HSKEIDDVDFSI-SGEQIVSIA  178 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~sp-~~~~l~s~~  178 (297)
                      ..+++|+++|++++++..++.|..||..+++.. .+..                    ....+..+++.+ +++ |+.+.
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            357889999987888888999999998765432 2210                    113578999998 555 55554


Q ss_pred             CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC-CCeEEEEeccC---------cccccCCCCeEEEEeC
Q psy3337         179 KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP-KRSRLFTLANP---------LAQNKRGISYVQQWDV  248 (297)
Q Consensus       179 ~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~---------~~~~g~~d~~i~~wd~  248 (297)
                      ..+.|..+|..++.. ..+..... +  .  .......+++.+ +|...++-...         .+..+...+.|..||.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~-~--~--~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVD-G--V--PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEET-T--E--ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             CCCCEEEEeCCCCEE-EEecccCC-C--C--cccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            555588888765432 22221100 0  0  011234577899 88765553220         0011233578999998


Q ss_pred             CCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         249 DSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .+++.......-.....++|+|+|++|+++....+.|.+|++..
T Consensus       173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            87765433332233678999999997766643168999999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.00012  Score=63.57  Aligned_cols=151  Identities=9%  Similarity=0.073  Sum_probs=92.7

Q ss_pred             EEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC-C----cEEEEEcCCCce
Q psy3337         120 QRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD-G----KAFVWNSKNGSL  193 (297)
Q Consensus       120 v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-~----~v~lwd~~~~~~  193 (297)
                      ...++++| ++..|+.+...+.|+.+|+..+...... ........++|++++++|+.+... +    .+.+++. .+..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence            45889998 3545555555488999998776644333 344568899999999966666542 2    2333443 3322


Q ss_pred             e--eeeeccCCCCceEEEEeeeeeeeeeCC-CCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc--CCCeEEEEE
Q psy3337         194 S--KELKWNTPDNIKYLFKRCRYGLVEDSP-KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM--KESLSALAV  268 (297)
Q Consensus       194 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~--~~~v~~~~~  268 (297)
                      .  ..+..           ......++++| ++..+++-.        ..+.|..++...+........  ......++|
T Consensus       217 ~~~~~l~~-----------~~~p~giavdp~~g~lyv~d~--------~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~  277 (430)
T 3tc9_A          217 KVITELTK-----------GQNCNGAETHPINGELYFNSW--------NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF  277 (430)
T ss_dssp             CSEEEEEE-----------CSSCCCEEECTTTCCEEEEET--------TTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred             eeeeeecc-----------CCCceEEEEeCCCCEEEEEEC--------CCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence            1  11110           01112367899 555444422        367899999987654332222  233789999


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeC
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      +|+|++|+.+....+.|..++..
T Consensus       278 ~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          278 HPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEeCC
Confidence            99999666655437889998865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.29  E-value=0.00056  Score=56.73  Aligned_cols=176  Identities=6%  Similarity=-0.100  Sum_probs=106.6

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCC----CeeeEEeccccCCeeEEEEccCC
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPK----MKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      .|+. ++.+.+....+  .......+++|++.++ .+++-...+.|..+++..    ......+...-.....+++.+.+
T Consensus        11 ~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             eEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            4666 88777665544  3344567999998654 455556678999999875    22222232223456789998755


Q ss_pred             CEE-EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         172 EQI-VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       172 ~~l-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      ..| ++-...+.|.++|+... ....+.... .        .....++++|.+..|+.+..     + ..+.|..+++..
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~-~--------~~P~~iavdp~~g~ly~~d~-----~-~~~~I~~~~~dG  152 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGV-KRKTLFREN-G--------SKPRAIVVDPVHGFMYWTDW-----G-TPAKIKKGGLNG  152 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSS-SEEEEEECT-T--------CCEEEEEEETTTTEEEEEEC-----S-SSCEEEEEETTS
T ss_pred             CeEEEEECCCCEEEEEeCCCC-ceEEEEECC-C--------CCcceEEeCCCCCEEEEEcc-----C-CCCeEEEEcCCC
Confidence            545 44456788999998643 222222110 0        01224677887666666543     1 136888888864


Q ss_pred             CceEEEe-cc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         251 GRLRLAR-EM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       251 ~~~~~~~-~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                       .....+ .. -.....++++|++..|..+....+.|..+|+..
T Consensus       153 -~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          153 -VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             -CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence             333333 22 233889999998877776665367899999753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.22  E-value=0.00071  Score=54.09  Aligned_cols=184  Identities=10%  Similarity=0.081  Sum_probs=111.1

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee---eEEec------cccCCeeE
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP---LLHIE------AHSKEIDD  164 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~---~~~~~------~~~~~v~~  164 (297)
                      .++.|.. +.. ++.++.+..+-....-.+++.+++.++++.-.++.+.++++.....   +....      ........
T Consensus        47 ~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EG  125 (255)
T 3qqz_A           47 KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEG  125 (255)
T ss_dssp             TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEE
T ss_pred             CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcce
Confidence            3555555 776 7877777523224467899999988777776788899998764332   22221      12345689


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcC---CCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         165 VDFSISGEQIVSIAKDGKAFVWNSK---NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d~~v~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      |+|+|.+..|+++.......+|.+.   ....+..+....... .  .....+..++++|....++.++.       ...
T Consensus       126 LA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~-~--~~~~d~S~l~~dp~tg~lliLS~-------~s~  195 (255)
T 3qqz_A          126 LAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR-Q--FTLDDVSGAEFNQQKNTLLVLSH-------ESR  195 (255)
T ss_dssp             EEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH-T--CCSSCCCEEEEETTTTEEEEEET-------TTT
T ss_pred             EEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc-c--cccCCceeEEEcCCCCeEEEEEC-------CCC
Confidence            9999998777766655455555543   111122211100000 0  00112456888998777777654       468


Q ss_pred             eEEEEeCCCCceEEEeccC----------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         242 YVQQWDVDSGRLRLAREMK----------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~~~----------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .|..+|.. |+.+..+...          .....|+|.++|+..+ .++ .+.+++|.-.+
T Consensus       196 ~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE-~n~~y~f~~~~  253 (255)
T 3qqz_A          196 ALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSE-PNRFYRFTPQS  253 (255)
T ss_dssp             EEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EET-TTEEEEEEC--
T ss_pred             eEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcC-CceEEEEEecC
Confidence            89999977 5566555432          2378999999998444 466 67777776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.19  E-value=7.9e-05  Score=68.51  Aligned_cols=195  Identities=14%  Similarity=0.122  Sum_probs=117.1

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCC---------cE-EEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc--
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSES---------LQ-RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS--  159 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~---------~v-~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--  159 (297)
                      ++.++.|.- |..+|+.+-.+......         .+ ..+++  .+..++.++.|+.|..+|..+|+.+..+....  
T Consensus        72 ~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~  149 (668)
T 1kv9_A           72 SMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA  149 (668)
T ss_dssp             EEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTT
T ss_pred             ECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCC
Confidence            334556665 88899888776511110         00 11222  35578888899999999999999887775421  


Q ss_pred             --CCeeE-EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeecc--CCCCce----E---------------EE
Q psy3337         160 --KEIDD-VDFSISGEQIVSIAK------DGKAFVWNSKNGSLSKELKWN--TPDNIK----Y---------------LF  209 (297)
Q Consensus       160 --~~v~~-~~~sp~~~~l~s~~~------d~~v~lwd~~~~~~~~~~~~~--~~~~~~----~---------------~~  209 (297)
                        ..+.+ ..+ .++ .++.+..      ++.|+.+|..+|+.+-.+...  .|....    +               ..
T Consensus       150 ~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~  227 (668)
T 1kv9_A          150 KPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGG  227 (668)
T ss_dssp             SSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCE
T ss_pred             CcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCC
Confidence              11111 111 134 4444432      589999999999998777532  111100    0               00


Q ss_pred             EeeeeeeeeeCCCCeEEEEeccCcccccC-----------C----CCeEEEEeCCCCceEEEeccC----------CCeE
Q psy3337         210 KRCRYGLVEDSPKRSRLFTLANPLAQNKR-----------G----ISYVQQWDVDSGRLRLAREMK----------ESLS  264 (297)
Q Consensus       210 ~~~~~~~~~~s~~~~~l~~~~~~~~~~g~-----------~----d~~i~~wd~~~~~~~~~~~~~----------~~v~  264 (297)
                      ....+..++++|+...++.....    +.           .    .+.|..+|..+|+.+-.++..          ..+.
T Consensus       228 gg~~w~~~a~d~~~~~vy~~~~~----g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          228 GGTVWDSMAYDPELDLLYVGTGN----GSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             ECCCCSCEEEETTTTEEEEECCC----EESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             CCccccceEEcCCCCEEEEeCCC----CCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence            11112245677777777664330    00           0    125999999999988776542          1222


Q ss_pred             EEEEcCCCC---EEEEEecCCCeEEEEEeCCceec
Q psy3337         265 ALAVRDDGR---FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       265 ~~~~s~dg~---~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ...+..+|+   .|+.++. +|.++++|..+|+.+
T Consensus       304 ~~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPK-NGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEE
T ss_pred             EEEeccCCcEEEEEEEECC-CCEEEEEECCCCCEe
Confidence            223334775   6888888 999999999999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.18  E-value=0.00016  Score=59.68  Aligned_cols=162  Identities=6%  Similarity=0.011  Sum_probs=104.1

Q ss_pred             CCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCeeeE-Eecc----cc--CCeeEEEE---ccCCCEEEEEe-------
Q psy3337         117 ESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKPLL-HIEA----HS--KEIDDVDF---SISGEQIVSIA-------  178 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~-~~~~----~~--~~v~~~~~---sp~~~~l~s~~-------  178 (297)
                      ...-.++.|++....|. +.-..++|..||...+.... .+..    ..  ..+..|.|   .|+++++++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            33345889988554454 55579999999987554332 2322    11  13679999   68887777543       


Q ss_pred             ------CCCcEEEEEcC---CCceeeeeeccC--CC-----CceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC-C
Q psy3337         179 ------KDGKAFVWNSK---NGSLSKELKWNT--PD-----NIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI-S  241 (297)
Q Consensus       179 ------~d~~v~lwd~~---~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d-~  241 (297)
                            .+..|..||+.   +++.+.......  ..     +..+    ...+.++..++|+..++.+.        . +
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~----~~~nDvavD~~GnaYVt~s~--------~~~  159 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP----FGVVQSAQDRDGNSYVAFAL--------GMP  159 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC----EEEEEEEECTTSCEEEEEEE--------SSC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc----cCCceeEECCCCCEEEeCCC--------CCC
Confidence                  26779999998   777765554211  00     0000    12346788999987777544        4 6


Q ss_pred             eEEEEeCCCCceEEEec--c---CCC--eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         242 YVQQWDVDSGRLRLARE--M---KES--LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       242 ~i~~wd~~~~~~~~~~~--~---~~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .|..++.... .+..+.  .   ...  .+.|+++|+|..|++... .|.|..+|+.+
T Consensus       160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence            6777776633 222221  1   111  679999999999999998 99999999763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.14  E-value=0.0019  Score=54.37  Aligned_cols=177  Identities=8%  Similarity=-0.021  Sum_probs=105.9

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEE-
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI-  174 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-  174 (297)
                      .|+. ++...... .+. .....+..++|++..+. +++-...+.|..+++........+.........+++.+.+..| 
T Consensus        54 ~I~~i~~~g~~~~-~~~-~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly  131 (349)
T 3v64_C           54 DIRQVLPHRSEYT-LLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  131 (349)
T ss_dssp             CEEEECTTSCCEE-EEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred             ceEEEeCCCCeeE-Eee-cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence            3544 65544433 333 33344689999986554 4555567889999987655433333333456789999855554 


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE
Q psy3337         175 VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR  254 (297)
Q Consensus       175 ~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~  254 (297)
                      ++-...+.|.+.++.... ...+.... .        ..-..++++|.+..|+.+..     +. .+.|..+++......
T Consensus       132 ~~d~~~~~I~~~~~dG~~-~~~l~~~~-l--------~~P~~iavdp~~g~ly~td~-----~~-~~~I~r~~~dG~~~~  195 (349)
T 3v64_C          132 WTDSGTSRIEVANLDGAH-RKVLLWQS-L--------EKPRAIALHPMEGTIYWTDW-----GN-TPRIEASSMDGSGRR  195 (349)
T ss_dssp             EEETTTTEEEEEETTSCS-CEEEECTT-C--------SCEEEEEEETTTTEEEEEEC-----SS-SCEEEEEETTSCSCE
T ss_pred             EEcCCCCeEEEEcCCCCc-eEEEEeCC-C--------CCcceEEEecCcCeEEEecc-----CC-CCEEEEEeCCCCCcE
Confidence            454556789999986432 22221111 0        01124777887666666543     11 378999988753333


Q ss_pred             EEecc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         255 LAREM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       255 ~~~~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..+.. -.....++|+|++..|..+....+.|..+|+..
T Consensus       196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            22222 223889999998777776665377899998754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.13  E-value=0.0013  Score=54.91  Aligned_cols=175  Identities=13%  Similarity=0.218  Sum_probs=109.5

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC----CC---E-EEEEcC--CCcEEEEeC--CCCeeeEEecc-----
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN----GD---L-MVTGGT--DGHLRLWSF--PKMKPLLHIEA-----  157 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~---~-l~s~~~--d~~i~iwd~--~~~~~~~~~~~-----  157 (297)
                      .+-+.+ |+ +|+.++.+. .  +.++.+.+-|+    |+   + +++.-.  +++|.+|++  .++ .+..+..     
T Consensus        49 ~~gL~Vydl-~G~~l~~~~-~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv  123 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYN-T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPI  123 (355)
T ss_dssp             TTEEEEEET-TSCEEEEEC-C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSCTTSCE
T ss_pred             CCCEEEEcC-CCcEEEEcc-C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccccccCc
Confidence            345777 88 888888875 2  45667766663    32   2 333334  578999976  333 3444421     


Q ss_pred             -cc-CCeeEEEE--ccC-CC-EEEEEeCCCcEEEEEcC---CC----ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe
Q psy3337         158 -HS-KEIDDVDF--SIS-GE-QIVSIAKDGKAFVWNSK---NG----SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS  224 (297)
Q Consensus       158 -~~-~~v~~~~~--sp~-~~-~l~s~~~d~~v~lwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  224 (297)
                       .. ..+..+++  +|. +. ++++...+|.+..|++.   .+    +.++++....           ....+...+...
T Consensus       124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-----------q~EgcvvDd~~g  192 (355)
T 3amr_A          124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-----------QTEGMAADDEYG  192 (355)
T ss_dssp             ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-----------CEEEEEEETTTT
T ss_pred             CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-----------CcceEEEcCCCC
Confidence             11 56777888  774 43 67778888999999883   22    3455554322           122244567777


Q ss_pred             EEEEeccCcccccCCCCeEEEEeCC-----CCceEEEeccC---CCeEEEEE--cCCCC-EEEEEecCCCeEEEEEeC-C
Q psy3337         225 RLFTLANPLAQNKRGISYVQQWDVD-----SGRLRLAREMK---ESLSALAV--RDDGR-FVAVGTMFTGSVFVYIAF-S  292 (297)
Q Consensus       225 ~l~~~~~~~~~~g~~d~~i~~wd~~-----~~~~~~~~~~~---~~v~~~~~--s~dg~-~l~~~~~~dg~i~vwd~~-~  292 (297)
                      .|+...        ++..|+.++..     +++.+..+...   ..+..|++  .++|+ +|++++..+.++.+||.. +
T Consensus       193 ~Lyv~e--------Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          193 RLYIAE--------EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             EEEEEE--------TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             eEEEec--------ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            777744        47778888865     34566555332   23888888  45666 777777547899999986 4


Q ss_pred             ce
Q psy3337         293 LQ  294 (297)
Q Consensus       293 ~~  294 (297)
                      .+
T Consensus       265 ~~  266 (355)
T 3amr_A          265 NK  266 (355)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.12  E-value=0.0019  Score=53.12  Aligned_cols=154  Identities=13%  Similarity=0.088  Sum_probs=93.5

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC--CcEEEEEcCCCceee
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD--GKAFVWNSKNGSLSK  195 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d--~~v~lwd~~~~~~~~  195 (297)
                      .....++|+++|+++++-..++.|..||.... ....+. ....+..+++.++++++++....  ..|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45679999999997778778899999997653 333332 23468899999999966655432  247777877776533


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce-EEEe-------c--cC-CCeE
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL-RLAR-------E--MK-ESLS  264 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~-~~~~-------~--~~-~~v~  264 (297)
                      ....  +.. .+.      ..++..+++..+++-        ...+.|+++|...++. +...       .  .. ....
T Consensus       110 ~~~~--~~~-~~~------~g~~~~~~~~~~v~d--------~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A          110 LLTL--PDA-IFL------NGITPLSDTQYLTAD--------SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             EEEC--TTC-SCE------EEEEESSSSEEEEEE--------TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             EEeC--CCc-ccc------CcccccCCCcEEEEE--------CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence            2221  111 111      112334455434332        2367899999876431 2111       0  11 1245


Q ss_pred             EEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         265 ALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       265 ~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .+  +|++++|+++....+.|.+|++..
T Consensus       173 gi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          173 GL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             Cc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            55  888887766665378999999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.12  E-value=0.0024  Score=54.79  Aligned_cols=178  Identities=5%  Similarity=-0.095  Sum_probs=107.3

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCC----eeeEEeccccCCeeEEEEccC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKM----KPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ..|+. ++........+  .....+..++|++....| ++-...+.|+.+++...    .....+.........+++.+.
T Consensus        92 ~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~  169 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  169 (400)
T ss_dssp             TEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred             ceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence            45555 66655544433  344567899999865544 55556788988988652    223333334456788999884


Q ss_pred             CCEE-EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         171 GEQI-VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       171 ~~~l-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      +..| ++-...+.|.+.++........+. ...         ..-..++++|.+..|+.+..     + ..+.|...++.
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~---------~~P~~iavdp~~g~ly~td~-----~-~~~~I~~~~~d  233 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENG---------SKPRAIVVDPVHGFMYWTDW-----G-TPAKIKKGGLN  233 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEE-CSS---------CCEEEEEEETTTTEEEEEEC-----S-SSCCEEEEETT
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEe-CCC---------CCcceEEEecccCeEEEEeC-----C-CCCEEEEEeCC
Confidence            4444 444567788888886443222221 110         01123677887666666543     2 23689999887


Q ss_pred             CCceEEEeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         250 SGRLRLAREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       250 ~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .......+... .....|++++++..|..+....+.|..+|+..
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            54333333332 34899999998888777765367899988754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.11  E-value=0.001  Score=56.84  Aligned_cols=177  Identities=7%  Similarity=-0.024  Sum_probs=106.0

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIV  175 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  175 (297)
                      .|+. ++........+  .....+..++|++.+. ++++-...+.|..+++........+.........+++.+.+..|+
T Consensus        97 ~I~~i~~~~~~~~~~~--~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY  174 (386)
T 3v65_B           97 DIRQVLPHRSEYTLLL--NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  174 (386)
T ss_dssp             CEEEECTTSCCCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             cceeeccCCCcEEEEe--cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEE
Confidence            4554 66555443333  3334467999998554 555656678899999876554333333334567899988555554


Q ss_pred             -EEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE
Q psy3337         176 -SIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR  254 (297)
Q Consensus       176 -s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~  254 (297)
                       +-...+.|.+.++.... ...+.... .        ..-..++++|.+..|+.+..     +. .+.|..+++......
T Consensus       175 ~~d~~~~~I~~~~~dg~~-~~~l~~~~-l--------~~P~giavdp~~g~ly~td~-----~~-~~~I~r~~~dG~~~~  238 (386)
T 3v65_B          175 WTDSGTSRIEVANLDGAH-RKVLLWQS-L--------EKPRAIALHPMEGTIYWTDW-----GN-TPRIEASSMDGSGRR  238 (386)
T ss_dssp             EEETTTTEEEECBTTSCS-CEEEECSS-C--------SCEEEEEEETTTTEEEEEEC-----SS-SCEEEEEETTSCSCE
T ss_pred             EEcCCCCeEEEEeCCCCc-eEEeecCC-C--------CCCcEEEEEcCCCeEEEecc-----CC-CCEEEEEeCCCCCcE
Confidence             44456788888875332 22221111 0        01124677887776766543     11 378999998754333


Q ss_pred             EEeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         255 LAREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       255 ~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ...... .....|+|+|++..|..+....+.|..+|+..
T Consensus       239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            333222 23789999987777766665377899888753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.10  E-value=0.0006  Score=61.54  Aligned_cols=160  Identities=13%  Similarity=0.076  Sum_probs=100.4

Q ss_pred             ceEEE-EeeCCCeEEEEec-CCC--------CcEEEEEEe-cCCC---EEEEEcCCCcEEEEeCCCCeeeEEecccc---
Q psy3337          97 KNLRF-GFKTFDSVQTVFA-GSE--------SLQRVVRLS-RNGD---LMVTGGTDGHLRLWSFPKMKPLLHIEAHS---  159 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~-~h~--------~~v~~~~~s-~~g~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---  159 (297)
                      +.|.- |..+|+.+-.+.. .|.        .++. +... .+|+   .++.++.+|.++++|..+++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            45665 9999998887762 232        1221 2222 4674   78889999999999999999876554321   


Q ss_pred             ----------CC--------------------------------eeEEEEccCCCEEEEEe-------------------
Q psy3337         160 ----------KE--------------------------------IDDVDFSISGEQIVSIA-------------------  178 (297)
Q Consensus       160 ----------~~--------------------------------v~~~~~sp~~~~l~s~~-------------------  178 (297)
                                .+                                -..++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      00                                01346677655555432                   


Q ss_pred             --------------CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         179 --------------KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       179 --------------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                                    .++.|..||+.+++.+-......+.....         +  ...+..++.        |+.|+.|+
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~---------~--~tagglvf~--------g~~dg~l~  510 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGV---------L--ATAGNLVFT--------GTGDGYFK  510 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCC---------E--EETTTEEEE--------ECTTSEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccc---------e--EeCCCEEEE--------ECCCCcEE
Confidence                          25778889988888776655332211000         0  112334444        55699999


Q ss_pred             EEeCCCCceEEEeccCCCeE--EEEEcCCCCEEE
Q psy3337         245 QWDVDSGRLRLAREMKESLS--ALAVRDDGRFVA  276 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~v~--~~~~s~dg~~l~  276 (297)
                      .||.++|+.+-.+.....+.  -+.+..+|+..+
T Consensus       511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            99999999998887765533  366777887433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.08  E-value=7.2e-05  Score=69.77  Aligned_cols=180  Identities=10%  Similarity=0.083  Sum_probs=97.2

Q ss_pred             CCCCceEEE-EeeCC-CeEEEEecCCCCcEEEEEEecCCCEEEEEcCC-----CcEEEEeCCCCee--eEEec-cccCCe
Q psy3337          93 DSKEKNLRF-GFKTF-DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTD-----GHLRLWSFPKMKP--LLHIE-AHSKEI  162 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~-~~~~~v  162 (297)
                      ++...+|++ ++.++ +.+....   ......++|+|||+.|+....|     ..|+++++.++..  ...+. .+....
T Consensus       197 G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  273 (751)
T 2xe4_A          197 GNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFS  273 (751)
T ss_dssp             SSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCE
T ss_pred             CCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceE
Confidence            334456888 88887 6321111   1112468899999888876655     3588888876542  22332 223456


Q ss_pred             eEEEEccCCCEEEEEeC---CCcEEEEEcCCCc-ee--eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         163 DDVDFSISGEQIVSIAK---DGKAFVWNSKNGS-LS--KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~---d~~v~lwd~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      ..+.|+|||++|+..+.   ...|+++|+.++. ..  ..+.... ..  ..+      .+.|+. +..|+..++.   .
T Consensus       274 ~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~--~~~------s~~~~~-g~~l~~~t~~---~  340 (751)
T 2xe4_A          274 AFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KG--VRY------DVQMHG-TSHLVILTNE---G  340 (751)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TT--CCE------EEEEET-TTEEEEEECT---T
T ss_pred             EEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CC--ceE------EEeeee-CCEEEEEeCC---C
Confidence            78899999998886653   3468888987652 12  2222111 11  001      122222 5555554440   0


Q ss_pred             cCCCCeEEEEeCCCC-ceEE-EeccCCC--eEEEEEcCCCCEEEEEecCCCe--EEEEEe
Q psy3337         237 KRGISYVQQWDVDSG-RLRL-AREMKES--LSALAVRDDGRFVAVGTMFTGS--VFVYIA  290 (297)
Q Consensus       237 g~~d~~i~~wd~~~~-~~~~-~~~~~~~--v~~~~~s~dg~~l~~~~~~dg~--i~vwd~  290 (297)
                      +.....|..+|+.++ +... .+.....  +..+.+. .+.++++... ++.  |.++++
T Consensus       341 ~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~-~g~~~l~~~dl  398 (751)
T 2xe4_A          341 GAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRR-AGLTRIWTMMA  398 (751)
T ss_dssp             TCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEE-TTEEEEEEEEC
T ss_pred             CCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEe-CCEEEEEEEec
Confidence            123457888888752 2222 2333333  5556554 2344555565 775  455564

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.07  E-value=0.00061  Score=61.37  Aligned_cols=161  Identities=9%  Similarity=-0.014  Sum_probs=101.2

Q ss_pred             eEEE-EeeCCCeEEEEec-CCC--------CcEEEEEEecCCC---EEEEEcCCCcEEEEeCCCCeeeEEecccc-----
Q psy3337          98 NLRF-GFKTFDSVQTVFA-GSE--------SLQRVVRLSRNGD---LMVTGGTDGHLRLWSFPKMKPLLHIEAHS-----  159 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~-~h~--------~~v~~~~~s~~g~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----  159 (297)
                      .|.. |..+|+.+-.+.. .|.        .++ -+...++|+   .++.++.+|.++++|..+++.+..+....     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            4555 9999998877762 221        222 223335774   57788899999999999998876654211     


Q ss_pred             --------CCe--------------------------eEEEEccCCCEEEEEe---------------------------
Q psy3337         160 --------KEI--------------------------DDVDFSISGEQIVSIA---------------------------  178 (297)
Q Consensus       160 --------~~v--------------------------~~~~~sp~~~~l~s~~---------------------------  178 (297)
                              .++                          ..++++|+..+|+...                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    111                          2467888777776653                           


Q ss_pred             ----------CCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         179 ----------KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       179 ----------~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                                .++.|..||+.+++.+.++....+...           ......+..++.        ++.|+.|+.||.
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~-----------~~~~t~gg~v~~--------g~~dg~l~a~D~  492 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG-----------GTLYTKGGLVWY--------ATLDGYLKALDN  492 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS-----------BCEEETTTEEEE--------ECTTSEEEEEET
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc-----------eeEEECCCEEEE--------EcCCCeEEEEEC
Confidence                      347788899888887766653321110           001112334554        455999999999


Q ss_pred             CCCceEEEeccCCCe--EEEEEcCCCCEEEEE
Q psy3337         249 DSGRLRLAREMKESL--SALAVRDDGRFVAVG  278 (297)
Q Consensus       249 ~~~~~~~~~~~~~~v--~~~~~s~dg~~l~~~  278 (297)
                      .+|+++..+.....+  ..+.+..+|+.++..
T Consensus       493 ~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          493 KDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCCCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence            999999888765442  234455777755443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.05  E-value=0.0015  Score=55.80  Aligned_cols=156  Identities=6%  Similarity=-0.073  Sum_probs=94.0

Q ss_pred             EEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC-C-CcEEEEEcCCCceeee
Q psy3337         120 QRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK-D-GKAFVWNSKNGSLSKE  196 (297)
Q Consensus       120 v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-d-~~v~lwd~~~~~~~~~  196 (297)
                      ...+++.+.+ +++++-...+.|.+.++........+...-.....+++.|.+..|+.+.. . +.|..+++... ....
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~  239 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRI  239 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEE
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEE
Confidence            3578888754 45556666778888887644333333333456789999997766665543 3 67888887532 2222


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CCeEEEEEcCCCCEE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ESLSALAVRDDGRFV  275 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~dg~~l  275 (297)
                      +.... .  .      .-..|+++|++..|+.+..       ..+.|..+|+........+... .....+++ ..+..+
T Consensus       240 ~~~~~-~--~------~PnGlavd~~~~~lY~aD~-------~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly  302 (386)
T 3v65_B          240 IADTH-L--F------WPNGLTIDYAGRRMYWVDA-------KHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLY  302 (386)
T ss_dssp             EECSS-C--S------CEEEEEEEGGGTEEEEEET-------TTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEE
T ss_pred             EEECC-C--C------CeeeEEEeCCCCEEEEEEC-------CCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEE
Confidence            21110 0  0      1124788987777777643       3578999998754333333322 23788888 344444


Q ss_pred             EEEecCCCeEEEEEeCCce
Q psy3337         276 AVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++-.. .+.|..++..+++
T Consensus       303 ~td~~-~~~V~~~~~~~G~  320 (386)
T 3v65_B          303 WTDWH-TKSINSANKFTGK  320 (386)
T ss_dssp             EEETT-TTEEEEEETTTCC
T ss_pred             EeeCC-CCeEEEEECCCCc
Confidence            44445 8889988865554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.04  E-value=0.0023  Score=53.83  Aligned_cols=156  Identities=6%  Similarity=-0.052  Sum_probs=94.0

Q ss_pred             EEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe-CC-CcEEEEEcCCCceeee
Q psy3337         120 QRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA-KD-GKAFVWNSKNGSLSKE  196 (297)
Q Consensus       120 v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~d-~~v~lwd~~~~~~~~~  196 (297)
                      ...+++.+.+ +++++-...+.|.+.++........+...-.....++++|.+..|+.+. .. +.|..+++... ....
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~  196 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRI  196 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEE
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEE
Confidence            4578898754 5556666778899999865433333333345678999999666655554 34 67888887532 2222


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CCeEEEEEcCCCCEE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ESLSALAVRDDGRFV  275 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~dg~~l  275 (297)
                      +....     +    ..-..++++|++..|+.+..       ..+.|..+|+........+... .....+++. ++...
T Consensus       197 ~~~~~-----~----~~PnGla~d~~~~~lY~aD~-------~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly  259 (349)
T 3v64_C          197 IADTH-----L----FWPNGLTIDYAGRRMYWVDA-------KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLY  259 (349)
T ss_dssp             SCCSS-----C----SCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEE
T ss_pred             EEECC-----C----CCcceEEEeCCCCEEEEEEC-------CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEE
Confidence            21110     0    01124788987777777643       3578999998754333333322 237788883 44444


Q ss_pred             EEEecCCCeEEEEEeCCce
Q psy3337         276 AVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++-.. .+.|..++..+++
T Consensus       260 ~td~~-~~~V~~~~~~~G~  277 (349)
T 3v64_C          260 WTDWH-TKSINSANKFTGK  277 (349)
T ss_dssp             EEETT-TTEEEEEETTTCC
T ss_pred             EecCC-CCeEEEEEccCCC
Confidence            44444 7888888865554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.02  E-value=0.0015  Score=54.15  Aligned_cols=151  Identities=11%  Similarity=0.023  Sum_probs=89.8

Q ss_pred             cEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEecc-----ccCCeeEEEEcc-CCCEEEEEeC------------
Q psy3337         119 LQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEA-----HSKEIDDVDFSI-SGEQIVSIAK------------  179 (297)
Q Consensus       119 ~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp-~~~~l~s~~~------------  179 (297)
                      .+..+++.+ +++ |+.+...+.|..+|..++.. ..+..     .......+++.| +|+++++-..            
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            467899998 665 44444445588888765542 22211     113468899999 9987776432            


Q ss_pred             -----CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC---
Q psy3337         180 -----DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG---  251 (297)
Q Consensus       180 -----d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~---  251 (297)
                           ++.|..||..+++.......-           ..-..++++|++..|+.+..       ..+.|.+|++...   
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~-----------~~p~gia~~~dg~~lyv~d~-------~~~~I~~~~~~~~~~~  220 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKEL-----------HVPGGAEVSADSSFVLVAEF-------LSHQIVKYWLEGPKKG  220 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEE-----------SCCCEEEECTTSSEEEEEEG-------GGTEEEEEESSSTTTT
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCC-----------ccCcceEECCCCCEEEEEeC-------CCCeEEEEECCCCcCC
Confidence                 367888887666532221110           01123788999987766532       2578999998742   


Q ss_pred             ceEEEeccCCCeEEEEEcCCCCEEEEEec---------CCCeEEEEEe
Q psy3337         252 RLRLAREMKESLSALAVRDDGRFVAVGTM---------FTGSVFVYIA  290 (297)
Q Consensus       252 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~---------~dg~i~vwd~  290 (297)
                      .......... ...+++.++|++.++...         ..+.|..+|.
T Consensus       221 ~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          221 TAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             CEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             ccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence            2111111222 788999999986554431         0245777765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.99  E-value=0.0016  Score=56.55  Aligned_cols=153  Identities=13%  Similarity=0.130  Sum_probs=89.6

Q ss_pred             EEEEEEecC--CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC---C-cEEEEEcCCCce
Q psy3337         120 QRVVRLSRN--GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD---G-KAFVWNSKNGSL  193 (297)
Q Consensus       120 v~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---~-~v~lwd~~~~~~  193 (297)
                      ...++|+|+  ...|+.+...+.|+.+|+.++...... ........++|+++++++++....   . .+...+...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            458999995  344555544489999998777654433 344568899999999944443321   1 133333221110


Q ss_pred             e-eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe-cc--CCCeEEEEEc
Q psy3337         194 S-KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR-EM--KESLSALAVR  269 (297)
Q Consensus       194 ~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~-~~--~~~v~~~~~s  269 (297)
                      . ..+.           .......++++|+...|+.+..       ..+.|+.+|..++.....+ ..  ......++|+
T Consensus       220 ~~~~~~-----------~~~~P~giavd~~~G~lyv~d~-------~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~d  281 (433)
T 4hw6_A          220 ERLSLC-----------NARGAKTCAVHPQNGKIYYTRY-------HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWH  281 (433)
T ss_dssp             CEEEEE-----------ECSSBCCCEECTTTCCEEECBT-------TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEEC
T ss_pred             cccccc-----------ccCCCCEEEEeCCCCeEEEEEC-------CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEe
Confidence            0 0000           0111223778884334544322       3678999999877663222 22  1224579999


Q ss_pred             CCCCEEEEEecCCCeEEEEEeC
Q psy3337         270 DDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      |+|++|+.+....+.|+.+++.
T Consensus       282 pdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          282 PTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             TTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCCEEEEEeCCCCEEEEEeCC
Confidence            9999766665437889998864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.98  E-value=0.00095  Score=53.38  Aligned_cols=165  Identities=10%  Similarity=0.073  Sum_probs=102.2

Q ss_pred             CCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCeeeEEecc-ccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q psy3337         115 GSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKPLLHIEA-HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGS  192 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~  192 (297)
                      +-...+..++|+|+++.|+ +...++.|...|.. ++.++.+.- -....-.|++.+++.++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            6556799999999876554 57778899999987 777776642 12457889999998877776677889999886543


Q ss_pred             ee---eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC-CCceEEEecc-------C-
Q psy3337         193 LS---KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD-SGRLRLAREM-------K-  260 (297)
Q Consensus       193 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~-~~~~~~~~~~-------~-  260 (297)
                      .+   .........    ......+..++++|++..|+++..      .....|+.|+-. ....+..+..       . 
T Consensus       103 ~i~~~~~~~~~~~~----~~~N~g~EGLA~d~~~~~L~va~E------~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A          103 EVKILKKIKIPLQE----SPTNCGFEGLAYSRQDHTFWFFKE------KNPIEVYKVNGLLSSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             CEEEEEEEECCCSS----CCCSSCCEEEEEETTTTEEEEEEE------SSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred             eeeeeeeecccccc----ccccCCcceEEEeCCCCEEEEEEC------cCCceEEEEcccccCCceeeecchhhcccccc
Confidence            22   222111000    001122456899999988888654      112256666511 1111222211       1 


Q ss_pred             CCeEEEEEcCCC-CEEEEEecCCCeEEEEEeC
Q psy3337         261 ESLSALAVRDDG-RFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       261 ~~v~~~~~s~dg-~~l~~~~~~dg~i~vwd~~  291 (297)
                      ..+.+++++|.. ++++.... ...|.++|..
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~-s~~L~~~d~~  203 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHE-SRALQEVTLV  203 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETT-TTEEEEECTT
T ss_pred             CCceeEEEcCCCCeEEEEECC-CCeEEEEcCC
Confidence            127899999954 45555555 7778888754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.96  E-value=0.00083  Score=60.73  Aligned_cols=198  Identities=10%  Similarity=0.101  Sum_probs=114.8

Q ss_pred             CceEEE-Ee-eCCCeEEEEecCCCC----------cEEEEEEecCCCE----EEEEcCCCcEEEEeCCCCeeeEEecccc
Q psy3337          96 EKNLRF-GF-KTFDSVQTVFAGSES----------LQRVVRLSRNGDL----MVTGGTDGHLRLWSFPKMKPLLHIEAHS  159 (297)
Q Consensus        96 d~~i~~-~~-~~~~~~~~~~~~h~~----------~v~~~~~s~~g~~----l~s~~~d~~i~iwd~~~~~~~~~~~~~~  159 (297)
                      ++.|.- |. .+|+.+-.+......          ....++++|.+..    ++.++.|+.|..+|..+|+.+.......
T Consensus        72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~  151 (599)
T 1w6s_A           72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD  151 (599)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCC
Confidence            555555 98 899988776522110          0123556554444    8888899999999999999887654322


Q ss_pred             ----CCee-EEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeeeccCCCCc-----------------------
Q psy3337         160 ----KEID-DVDFSISGEQIVSIA------KDGKAFVWNSKNGSLSKELKWNTPDNI-----------------------  205 (297)
Q Consensus       160 ----~~v~-~~~~sp~~~~l~s~~------~d~~v~lwd~~~~~~~~~~~~~~~~~~-----------------------  205 (297)
                          ..+. ...+. ++ .++.++      .++.|+.+|..+|+.+-.+....+...                       
T Consensus       152 ~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~t  229 (599)
T 1w6s_A          152 IKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGT  229 (599)
T ss_dssp             GGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHT
T ss_pred             CCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccccccccccc
Confidence                0121 11111 44 455444      379999999999998877654322100                       


Q ss_pred             ----eEEE-EeeeeeeeeeCCCCeEEEEeccC------cccccC--CCCeEEEEeCCCCceEEEeccCC----------C
Q psy3337         206 ----KYLF-KRCRYGLVEDSPKRSRLFTLANP------LAQNKR--GISYVQQWDVDSGRLRLAREMKE----------S  262 (297)
Q Consensus       206 ----~~~~-~~~~~~~~~~s~~~~~l~~~~~~------~~~~g~--~d~~i~~wd~~~~~~~~~~~~~~----------~  262 (297)
                          .+.. ....+..+++.++...++.....      ....+.  ....|..+|..+|+.+-.++...          .
T Consensus       230 w~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~  309 (599)
T 1w6s_A          230 WEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNV  309 (599)
T ss_dssp             SSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCC
T ss_pred             CCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCc
Confidence                0000 00001123445565556654320      000000  02489999999999887765421          1


Q ss_pred             eEEEEEc-CCC---CEEEEEecCCCeEEEEEeCCceec
Q psy3337         263 LSALAVR-DDG---RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       263 v~~~~~s-~dg---~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..-+... .+|   ..++.++. +|.++++|..+|+.+
T Consensus       310 p~l~d~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          310 MMLSEQKDKDGKARKLLTHPDR-NGIVYTLDRTDGALV  346 (599)
T ss_dssp             CEEEEEECTTSCEEEEEEEECT-TSEEEEEETTTCCEE
T ss_pred             cEEEeccccCCcEEEEEEEECC-CcEEEEEECCCCCEe
Confidence            1112222 567   46777888 999999999999865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.96  E-value=0.0054  Score=50.72  Aligned_cols=158  Identities=10%  Similarity=-0.024  Sum_probs=95.9

Q ss_pred             cEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC--CcEEEEEcCCCceee
Q psy3337         119 LQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD--GKAFVWNSKNGSLSK  195 (297)
Q Consensus       119 ~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d--~~v~lwd~~~~~~~~  195 (297)
                      ....+++.+.+ ++.++-...+.|.++++........+.........+++.|.+..|+.+...  +.|..+++. |....
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~  156 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIY  156 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeE
Confidence            34688998754 455566678899999986543332333334567899999976666655543  678888874 33333


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc---CCCeEEEEEcCCC
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM---KESLSALAVRDDG  272 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~---~~~v~~~~~s~dg  272 (297)
                      .+.... .        ..-..++++|++..|+.+..       ..+.|..+|+...........   ......+++. .+
T Consensus       157 ~~~~~~-~--------~~P~gla~d~~~~~lY~~D~-------~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~  219 (316)
T 1ijq_A          157 SLVTEN-I--------QWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-ED  219 (316)
T ss_dssp             EEECSS-C--------SCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TT
T ss_pred             EEEECC-C--------CCceEEEEeccCCEEEEEEC-------CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CC
Confidence            221110 0        01124788988877777643       357899999975332222222   1236788885 34


Q ss_pred             CEEEEEecCCCeEEEEEeCCcee
Q psy3337         273 RFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ..+++-.. .+.|..++..+++.
T Consensus       220 ~ly~~d~~-~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          220 KVFWTDII-NEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEEEETT-TTEEEEEETTTCCC
T ss_pred             EEEEEECC-CCeEEEEeCCCCcc
Confidence            44444444 78999999776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0018  Score=56.80  Aligned_cols=153  Identities=8%  Similarity=0.081  Sum_probs=92.9

Q ss_pred             EEEEEEecC-C-CEEEEEcCCCcEEEEeCCCCeeeEEeccc---cCCeeEEEE-------ccCCCEEEEEeCCC------
Q psy3337         120 QRVVRLSRN-G-DLMVTGGTDGHLRLWSFPKMKPLLHIEAH---SKEIDDVDF-------SISGEQIVSIAKDG------  181 (297)
Q Consensus       120 v~~~~~s~~-g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------sp~~~~l~s~~~d~------  181 (297)
                      ...++|+|. . +++++-...+.|++.|+.++.....+...   ......++|       ++++..|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            568999983 4 44444444567899998877654433321   235889999       99999676665543      


Q ss_pred             -cEEEEEcCC-Ccee-----eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC-----
Q psy3337         182 -KAFVWNSKN-GSLS-----KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD-----  249 (297)
Q Consensus       182 -~v~lwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~-----  249 (297)
                       .|.+++... +...     ..+.           ....-..++.+|++..|+.+..       ..+.|..+|+.     
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~-----------~~~~p~giavdp~~g~LYvtd~-------~~g~V~r~d~~~~~~~  282 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIA-----------AYKQCNGATIHPINGELYFNSY-------EKGQVFRLDLVDYFKT  282 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEE-----------EESCCCCEEECTTTCCEEEEET-------TTTEEEEECHHHHHHH
T ss_pred             ceEEEEecCCCCceeecccceeec-----------cCCCceEEEEcCCCCeEEEEEC-------CCCEEEEEeccccccc
Confidence             266666433 2221     1111           0011123677996666665433       36789999987     


Q ss_pred             --CCce--------------EEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         250 --SGRL--------------RLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       250 --~~~~--------------~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                        ++..              +.........+.++|+|+|++|..+......|+.++.
T Consensus       283 ~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             HHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence              4443              2222222337899999999976655542778888665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.90  E-value=0.0089  Score=51.22  Aligned_cols=159  Identities=9%  Similarity=-0.017  Sum_probs=97.2

Q ss_pred             CcEEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q psy3337         118 SLQRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLS  194 (297)
Q Consensus       118 ~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~  194 (297)
                      .....+++.+ .+++.++-...+.|.+.++........+...-.....|++.|.+.+|+.+..  .+.|...++... ..
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~  237 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DI  237 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SC
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-cc
Confidence            3456888988 4555566667788999998755443334334445789999997666666553  367888887533 22


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC---CCeEEEEEcCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK---ESLSALAVRDD  271 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~---~~v~~~~~s~d  271 (297)
                      ..+....     +    ..-..|++++++..|+.+..       ....|..+|+............   ....++++. .
T Consensus       238 ~~~~~~~-----l----~~P~glavd~~~~~lY~aD~-------~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~  300 (400)
T 3p5b_L          238 YSLVTEN-----I----QWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-E  300 (400)
T ss_dssp             EEEECSS-----C----SCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-T
T ss_pred             EEEEECC-----C----CceEEEEEEeCCCEEEEEEC-------CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-C
Confidence            2221110     0    01123788988887877643       3578999998754433333321   226677773 3


Q ss_pred             CCEEEEEecCCCeEEEEEeCCcee
Q psy3337         272 GRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       272 g~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +..+++-.. .+.|..+|..+++.
T Consensus       301 ~~lywtd~~-~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          301 DKVFWTDII-NEAIFSANRLTGSD  323 (400)
T ss_dssp             TEEEEEESS-SCSEEEEESSSCCC
T ss_pred             CEEEEecCC-CCeEEEEEcCCCCc
Confidence            344444444 78899998777653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.89  E-value=0.0064  Score=50.37  Aligned_cols=157  Identities=8%  Similarity=-0.056  Sum_probs=95.3

Q ss_pred             EEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeee
Q psy3337         120 QRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLSKE  196 (297)
Q Consensus       120 v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~~~  196 (297)
                      ...+++.+. ++++++-...+.|.++++........+.........+++.|.+..|+.+..  .+.|...++. |.....
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~  159 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFI  159 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEE
Confidence            457888874 455566667788999997643322223334456789999997666666553  4678888875 322222


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CCeEEEEEcCCCCEE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ESLSALAVRDDGRFV  275 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~dg~~l  275 (297)
                      +....     +    ..-..++++|++..|+.+..       ..+.|..+|+............ .....+++.. +..+
T Consensus       160 ~~~~~-----l----~~Pnglavd~~~~~lY~aD~-------~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~ly  222 (318)
T 3sov_A          160 IINSE-----I----YWPNGLTLDYEEQKLYWADA-------KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILY  222 (318)
T ss_dssp             EECSS-----C----SCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEE
T ss_pred             EEECC-----C----CCccEEEEeccCCEEEEEEC-------CCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEE
Confidence            21110     0    01124788997777777543       3678999998753333333322 2377888853 3344


Q ss_pred             EEEecCCCeEEEEEeCCcee
Q psy3337         276 AVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~~  295 (297)
                      ++-.. .+.|..++..+++.
T Consensus       223 wtd~~-~~~V~~~~~~~G~~  241 (318)
T 3sov_A          223 WTDWS-THSILACNKYTGEG  241 (318)
T ss_dssp             EEETT-TTEEEEEETTTCCS
T ss_pred             EEecC-CCeEEEEECCCCCc
Confidence            44444 78999999877654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.84  E-value=0.0047  Score=51.19  Aligned_cols=179  Identities=11%  Similarity=0.046  Sum_probs=104.4

Q ss_pred             ceEEE-EeeCCC-eEEEEecCCCCcEEEEEEecC-CCEEEEEcCCCcEEEEeCCCCee-eEEeccccCCeeEEEEccCCC
Q psy3337          97 KNLRF-GFKTFD-SVQTVFAGSESLQRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKP-LLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        97 ~~i~~-~~~~~~-~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ..|+. ++.... ....+. .....+.++.|++. +.++++-...+.|..+++..... ...+...-.....+++.+.+.
T Consensus        13 ~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            45666 766553 111221 22234668999985 45556666778899999876532 122222234567899987554


Q ss_pred             EE-EEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC
Q psy3337         173 QI-VSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG  251 (297)
Q Consensus       173 ~l-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~  251 (297)
                      .| ++-...+.|.++++... ....+.... .        ..-..+++.|.+..|+.+..     + ..+.|...++...
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~-~--------~~P~giavdp~~g~ly~td~-----~-~~~~I~r~~~dG~  155 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGS-LRKVLFWQE-L--------DQPRAIALDPSSGFMYWTDW-----G-EVPKIERAGMDGS  155 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSC-SCEEEECSS-C--------SSEEEEEEEGGGTEEEEEEC-----S-SSCEEEEEETTSC
T ss_pred             eEEEEECCCCEEEEEECCCC-cEEEEEeCC-C--------CCccEEEEeCCCCEEEEEec-----C-CCCEEEEEEcCCC
Confidence            44 44456678999998543 222221111 0        01123667876666666442     1 2478888888743


Q ss_pred             ceEEEecc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         252 RLRLAREM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       252 ~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ........ -.....++|+|++..|..+....+.|..+|+..
T Consensus       156 ~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          156 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            32222222 233789999998777776665378899998753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.79  E-value=0.0089  Score=54.40  Aligned_cols=182  Identities=8%  Similarity=-0.032  Sum_probs=111.8

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      ....|+. ++.+......+....-..+..++|++.... +++-..++.|..+++........+.........+++.+.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            3446666 887665444433233345779999996544 45666778899998865433333332234577899987665


Q ss_pred             EEEEE-eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC
Q psy3337         173 QIVSI-AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG  251 (297)
Q Consensus       173 ~l~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~  251 (297)
                      .|+.+ ...+.|.+.++.... ...+.... .        ..-..+++.|....|+....     | ..+.|...++...
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~-l--------~~P~~iavdp~~G~lY~tD~-----g-~~~~I~r~~~dG~  156 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQH-RQVLVWKD-L--------DSPRALALDPAEGFMYWTEW-----G-GKPKIDRAAMDGS  156 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTT-CEEEECSS-C--------CCEEEEEEETTTTEEEEEEC-----S-SSCEEEEEETTSC
T ss_pred             EEEEEECCCCEEEEEecCCCc-EEEEEeCC-C--------CCcccEEEccCCCeEEEeCC-----C-CCCEEEEEeCCCC
Confidence            55544 456788898885432 22222111 0        01124778886556666542     2 2468888888754


Q ss_pred             ceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         252 RLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       252 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ........-.....+++++++..|..+....+.|..+|+..
T Consensus       157 ~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          157 ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence            44333443344899999998887777765477888888754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.78  E-value=0.004  Score=51.90  Aligned_cols=146  Identities=14%  Similarity=0.154  Sum_probs=91.9

Q ss_pred             CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC----CC---EEEEEeC---CCcEEEEEcC--CCceeee
Q psy3337         129 GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS----GE---QIVSIAK---DGKAFVWNSK--NGSLSKE  196 (297)
Q Consensus       129 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~----~~---~l~s~~~---d~~v~lwd~~--~~~~~~~  196 (297)
                      ..+++.....+-+.+||+ +++.+..+..  +.++.+..-|+    ++   ++++...   +++|.+|++.  ++ .+..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence            345555566778999999 8888888753  56777777663    22   2333333   5789999773  33 3444


Q ss_pred             eecc-CCCCceEEEEeeeeeeeee--CCC-Ce-EEEEeccCcccccCCCCeEEEEeCC-------CCceEEEeccCCCeE
Q psy3337         197 LKWN-TPDNIKYLFKRCRYGLVED--SPK-RS-RLFTLANPLAQNKRGISYVQQWDVD-------SGRLRLAREMKESLS  264 (297)
Q Consensus       197 ~~~~-~~~~~~~~~~~~~~~~~~~--s~~-~~-~l~~~~~~~~~~g~~d~~i~~wd~~-------~~~~~~~~~~~~~v~  264 (297)
                      +... .|....    ......+++  +|. +. +++...        .++.+..|++.       +.+.++.+.....+.
T Consensus       116 i~~~~~pv~t~----~~~pyGlcly~~~~~g~~yafV~~--------k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E  183 (355)
T 3amr_A          116 MTDPDHPIATA----INEVYGFTLYHSQKTGKYYAMVTG--------KEGEFEQYELKADKNGYISGKKVRAFKMNSQTE  183 (355)
T ss_dssp             CSCTTSCEECC----CSSCCCEEEEECTTTCCEEEEEEC--------SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE
T ss_pred             ccccccCcCCC----CCCeeEEEEEecCCCCcEEEEEEC--------CCCeEEEEEEEeCCCCcccceEEEEecCCCCcc
Confidence            4210 010000    001111334  564 43 444433        37899999882       346778888877799


Q ss_pred             EEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         265 ALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       265 ~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .+.+.+....|+.+-+ +.-|..++..
T Consensus       184 gcvvDd~~g~Lyv~eE-d~GIw~~da~  209 (355)
T 3amr_A          184 GMAADDEYGRLYIAEE-DEAIWKFSAE  209 (355)
T ss_dssp             EEEEETTTTEEEEEET-TTEEEEEECS
T ss_pred             eEEEcCCCCeEEEecc-cceEEEEeCC
Confidence            9999999999999999 8777777754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.013  Score=54.63  Aligned_cols=173  Identities=6%  Similarity=-0.107  Sum_probs=103.3

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCC----eeeEEeccccCCeeEEEEccCCCEEEE
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKM----KPLLHIEAHSKEIDDVDFSISGEQIVS  176 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~s  176 (297)
                      ++........+  .....+..++|++.. .++++-...+.|+.+++...    .....+.........|++.+.+..|+.
T Consensus       410 ~l~~~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~  487 (791)
T 3m0c_C          410 TLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW  487 (791)
T ss_dssp             CTTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             eccCCcceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEE
Confidence            44444433333  334456799999854 45556666788988888642    223333334456778999987755554


Q ss_pred             E-eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEE
Q psy3337         177 I-AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRL  255 (297)
Q Consensus       177 ~-~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~  255 (297)
                      + ...+.|.+.++... ....+....-         ..-..|+++|.+..||.+..     | ..+.|.+.++.......
T Consensus       488 tD~~~~~I~v~~ldG~-~~~~l~~~~l---------~~P~gIaVDp~~g~LYwtD~-----g-~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGV-KRKTLFRENG---------SKPRAIVVDPVHGFMYWTDW-----G-TPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             EETTTTEEEEEETTSS-SEEEEEECTT---------CCEEEEEEETTTTEEEEEEC-----S-SSCEEEEEETTSCCEEE
T ss_pred             EecCCCeEEEEeCCCC-eEEEEEeCCC---------CCcceEEEecCCCCEEEecC-----C-CCCeEEEEecCCCceEE
Confidence            4 45688999998643 3333321110         01124778887666666543     1 13678888887544333


Q ss_pred             EeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         256 AREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       256 ~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .+... .....|++++.+..|+.+......|..+++..
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            33333 34899999987777777665367888888753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.73  E-value=0.0036  Score=54.32  Aligned_cols=159  Identities=13%  Similarity=0.102  Sum_probs=91.0

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCC---C-cEEEEeCCCCee-eEEeccccCCeeEEEEcc-CCCEEEEEeCCCcEEEEEc
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTD---G-HLRLWSFPKMKP-LLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNS  188 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d---~-~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d~~v~lwd~  188 (297)
                      ........++|+++|+++++....   . .+...+...+.. ...+. .-.....++++| ++.++++-..++.|+.+|.
T Consensus       179 ~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          179 TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred             cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence            344557899999999955554321   1 233333221111 01121 233456789999 6766666666788999998


Q ss_pred             CCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC--Cce--EEEeccC----
Q psy3337         189 KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS--GRL--RLAREMK----  260 (297)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~--~~~--~~~~~~~----  260 (297)
                      .++.....+.......  .      -..++++|++..|+.+..       ..+.|+.+++..  +..  ...+.+.    
T Consensus       258 ~~g~~~~~~~~~~~~~--~------~~~ia~dpdG~~LYvad~-------~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~  322 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKG--S------NFHIVWHPTGDWAYIIYN-------GKHCIYRVDYNRETGKLAVPYIVCGQHSSP  322 (433)
T ss_dssp             TTCCEEEEEEECSCCS--S------CEEEEECTTSSEEEEEET-------TTTEEEEEEBCTTTCCBCCCEEEEECTTCC
T ss_pred             CCCeEEEEEeccCCCC--C------cccEEEeCCCCEEEEEeC-------CCCEEEEEeCCCCCcccCcEEEEEecCCCC
Confidence            7776533332111110  0      013789999997776543       367899987652  321  1111111    


Q ss_pred             ------------CCeEEEEE---------cCCCCEEEEEecCCCeEEEEEe
Q psy3337         261 ------------ESLSALAV---------RDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       261 ------------~~v~~~~~---------s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                                  .....+++         .++|.+.++-.. .+.|+.++.
T Consensus       323 g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-n~~I~~~~~  372 (433)
T 4hw6_A          323 GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-SHTVRVLTP  372 (433)
T ss_dssp             CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-TTEEEEECT
T ss_pred             ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-CCEEEEECC
Confidence                        12677999         667766666555 788888874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.65  E-value=0.0015  Score=59.82  Aligned_cols=197  Identities=9%  Similarity=-0.068  Sum_probs=95.2

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcE-EEEEEecCCCEEEEEc-CC-----CcEEEEeCCCCeeeEEe----ccccCCe
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQ-RVVRLSRNGDLMVTGG-TD-----GHLRLWSFPKMKPLLHI----EAHSKEI  162 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v-~~~~~s~~g~~l~s~~-~d-----~~i~iwd~~~~~~~~~~----~~~~~~v  162 (297)
                      .+..+.+ |+.+.+....-. .+..+. .++++.+++++++.|+ .+     ..+.+||..+.+-...-    ......-
T Consensus       263 ~~~~v~~yd~~t~~W~~~~~-~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~  341 (656)
T 1k3i_A          263 DAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD  341 (656)
T ss_dssp             STTCEEEEEGGGTEEEECCC-CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred             CCCceEEecCcCCceeECCC-CCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence            4456777 887765443222 222221 3556667999999998 44     57999999876522210    0000000


Q ss_pred             eEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCC-CCeEEEEeccC
Q psy3337         163 DDVDFSISGEQIVSIAKD---------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP-KRSRLFTLANP  232 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d---------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~  232 (297)
                      ....+..++..++.++.+         ..+..||..+.............. ........-..+.+.. +++.++..+..
T Consensus       342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~-~~~~~~~~~~av~~~~~~~~i~v~GG~~  420 (656)
T 1k3i_A          342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR-GVAPDAMCGNAVMYDAVKGKILTFGGSP  420 (656)
T ss_dssp             TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT-EECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc-ccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence            001122345555555444         356788887655433221110000 0000000001122322 45555443210


Q ss_pred             cccccCCCC---eEEEEeCCCCceEEEe--ccCCC--eEEEEEcCCCCEEEEEecCC-----------CeEEEEEeCCce
Q psy3337         233 LAQNKRGIS---YVQQWDVDSGRLRLAR--EMKES--LSALAVRDDGRFVAVGTMFT-----------GSVFVYIAFSLQ  294 (297)
Q Consensus       233 ~~~~g~~d~---~i~~wd~~~~~~~~~~--~~~~~--v~~~~~s~dg~~l~~~~~~d-----------g~i~vwd~~~~~  294 (297)
                      .........   .|.+||..+.+-....  ..+..  -.++++.|+|++++.|+. +           ..+.+||..+.+
T Consensus       421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~-~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          421 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQ-RRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCB-SBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCc-ccCcCcCCCCcccceEEEcCCCCc
Confidence            000000011   6888888775543332  22222  345667789999999986 4           468999987654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.61  E-value=0.023  Score=53.09  Aligned_cols=158  Identities=11%  Similarity=-0.021  Sum_probs=96.2

Q ss_pred             CcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q psy3337         118 SLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLS  194 (297)
Q Consensus       118 ~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~  194 (297)
                      .....|++.+.+ +++++-...+.|.+.++........+.........|++.|...+|+.+..  .+.|...++. |...
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~  549 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDI  549 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCce
Confidence            345688898876 45556667789999998754433333334456889999997666666553  2678888875 3333


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC---CCeEEEEEcCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK---ESLSALAVRDD  271 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~---~~v~~~~~s~d  271 (297)
                      ..+....     +    ..-..|++++.+..||.+..       ....|..+++........+...   ....+|++.  
T Consensus       550 ~~lv~~~-----l----~~P~GLavD~~~~~LYwaD~-------~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--  611 (791)
T 3m0c_C          550 YSLVTEN-----I----QWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--  611 (791)
T ss_dssp             EEEECSS-----C----SCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--
T ss_pred             EEEEeCC-----C----CCceEEEEecCCCeEEEEeC-------CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--
Confidence            3332111     0    01123777877777777643       3568999999754444443332   125677764  


Q ss_pred             CCEEEEEecCCCeEEEEEeCCce
Q psy3337         272 GRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       272 g~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +..|+......+.|...|..+++
T Consensus       612 ~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          612 EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCEEEEEECCCCEEEEEeCCCCc
Confidence            34555555437888888876664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.56  E-value=0.029  Score=50.94  Aligned_cols=178  Identities=12%  Similarity=0.084  Sum_probs=101.8

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCee-eEEeccccCCeeEEEEccCCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKP-LLHIEAHSKEIDDVDFSISGE  172 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~  172 (297)
                      .+.|+. ++........+..........++|++.+..|+ +-...+.|..+++..... ...+...-.....+++.+.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            345666 76654311222213344567999999665555 444567888888865432 223333335688999999666


Q ss_pred             EEEEE-eCCCcEEEEEcCCCceeeeeec---cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         173 QIVSI-AKDGKAFVWNSKNGSLSKELKW---NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       173 ~l~s~-~~d~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      .|+.+ ...+.|.+.++... ....+..   ..|.            .|++.|.+..|+....     | ..+.|...++
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~------------~Iavdp~~g~ly~tD~-----g-~~~~I~r~~~  157 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPR------------AIALDPSSGFMYWTDW-----G-EVPKIERAGM  157 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCC------------CEEEETTTTEEEEEEC-----S-SSCEEEEEET
T ss_pred             EEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCc------------eEEEecCCCeEEEecc-----C-CCCEEEEEEC
Confidence            55554 45688999998643 3222321   1122            3677887666666543     2 2467777777


Q ss_pred             CCCceEEEecc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         249 DSGRLRLAREM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       249 ~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ........... -.....+++++++..|..+....+.|..+|+..
T Consensus       158 dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          158 DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             CCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            64333333322 233899999998777776665477888888754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.55  E-value=0.024  Score=46.36  Aligned_cols=156  Identities=8%  Similarity=-0.086  Sum_probs=88.5

Q ss_pred             EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-eEEec---------cccCCeeEEEEccCC
Q psy3337         102 GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-LLHIE---------AHSKEIDDVDFSISG  171 (297)
Q Consensus       102 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~---------~~~~~v~~~~~sp~~  171 (297)
                      +..+++...............++..+++..+++-..++.|+.+|..+++. +....         ..-.....+  +|++
T Consensus       101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred             cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence            55555543222211222334555555555555655688999999775431 21110         111234555  7888


Q ss_pred             CEEEEE-eCCCcEEEEEcCC-Cce--eeeee-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         172 EQIVSI-AKDGKAFVWNSKN-GSL--SKELK-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       172 ~~l~s~-~~d~~v~lwd~~~-~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      ..|+.+ ...+.|..||+.. +..  ...+. ...|.            .++++++|..+++...        .+.|.++
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~------------gi~vd~dG~l~va~~~--------~~~V~~~  238 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNID------------DFAFDVEGNLYGATHI--------YNSVVRI  238 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCS------------SEEEBTTCCEEEECBT--------TCCEEEE
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCC------------CeEECCCCCEEEEeCC--------CCeEEEE
Confidence            766555 4568899999864 321  11110 11122            3778999976555332        6789999


Q ss_pred             eCCCCceEE--EeccC-CCeEEEEEc---CCCCEEEEEec
Q psy3337         247 DVDSGRLRL--AREMK-ESLSALAVR---DDGRFVAVGTM  280 (297)
Q Consensus       247 d~~~~~~~~--~~~~~-~~v~~~~~s---~dg~~l~~~~~  280 (297)
                      |.. ++...  .+... ..+.+++|.   |+++.|++++.
T Consensus       239 ~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          239 APD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            976 66533  34433 348999998   89888777664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.54  E-value=0.00052  Score=63.39  Aligned_cols=155  Identities=11%  Similarity=0.024  Sum_probs=90.7

Q ss_pred             EEEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC-C-CcEEEEEcCCCceeee
Q psy3337         120 QRVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK-D-GKAFVWNSKNGSLSKE  196 (297)
Q Consensus       120 v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-d-~~v~lwd~~~~~~~~~  196 (297)
                      ...+++.+. ++++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++.. .....
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeE
Confidence            346777754 455555566788999997654433333323345678999996655555443 2 6777777642 22222


Q ss_pred             ee---ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC---CCeEEEEEcC
Q psy3337         197 LK---WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK---ESLSALAVRD  270 (297)
Q Consensus       197 ~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~---~~v~~~~~s~  270 (297)
                      +.   ...|.            .|+++|++..|+.+..       ..+.|.++++........+...   .....|++..
T Consensus       534 l~~~~l~~Pn------------Glavd~~~~~LY~aD~-------~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~  594 (699)
T 1n7d_A          534 LVTENIQWPN------------GITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE  594 (699)
T ss_dssp             ESCSSCSSCC------------CEEECTTTCCEEEEET-------TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET
T ss_pred             EEeCCCCCcc------------EEEEeccCCEEEEEec-------CCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC
Confidence            21   11122            3788998777777543       3578999999753333333211   1255666654


Q ss_pred             CCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         271 DGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       271 dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      + .++++... .+.|..++..+++.+
T Consensus       595 ~-~lywtd~~-~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          595 D-KVFWTDII-NEAIFSANRLTGSDV  618 (699)
T ss_dssp             T-EEEEECST-TTCEEEEETTTEEEE
T ss_pred             C-EEEEEeCC-CCeEEEEEccCCCce
Confidence            3 34444444 789999998776643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.54  E-value=0.0003  Score=64.93  Aligned_cols=175  Identities=6%  Similarity=-0.109  Sum_probs=98.7

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEE-cCCCcEEEEeCCC----CeeeEEeccccCCeeEEEEccC
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG-GTDGHLRLWSFPK----MKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ..|+. ++.+.+....+.  ....+..++|++.+..|+.. ...+.|+.+++..    ......+.........|++.+.
T Consensus       386 ~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             cceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            34555 666555443332  22345689999876655544 4567899999875    2222222222234567888864


Q ss_pred             CC-EEEEEeCCCcEEEEEcCCCceeeeeec---cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEE
Q psy3337         171 GE-QIVSIAKDGKAFVWNSKNGSLSKELKW---NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       171 ~~-~l~s~~~d~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      +. ++++-...+.|.++++..... ..+..   ..|.            .++++|.+..|+.+..     + ..+.|.++
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~------------giavDp~~g~ly~td~-----~-~~~~I~~~  524 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPR------------AIVVDPVHGFMYWTDW-----G-TPAKIKKG  524 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCC------------CEECCSSSSCCEECCC-----S-SSCCEEBC
T ss_pred             CCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcc------------eEEEccCCCcEEEccc-----C-CCCeEEEE
Confidence            44 444445567899999764432 22211   1122            3667887666666432     1 13678887


Q ss_pred             eCCCCceEEEecc-CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         247 DVDSGRLRLAREM-KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       247 d~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ++........+.. -.....|+|+|++..|+.+....+.|.++++..
T Consensus       525 ~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          525 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             eCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            7764222222222 223778999998766666554377899998753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.45  E-value=0.034  Score=52.07  Aligned_cols=156  Identities=8%  Similarity=0.022  Sum_probs=96.8

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec----cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE----AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL  193 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~  193 (297)
                      ..|.++...++|+.|..|..++-|.+||..+++......    .+...|.++...+++++.+.. . +-+.+||..+++.
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSF  483 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeE
Confidence            568899998888857777777779999988766432211    134578999998888866654 4 4588999877644


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec-------cC-CCeEE
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE-------MK-ESLSA  265 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~-------~~-~~v~~  265 (297)
                      ........+..    +....+..+...++|...+..         . +.|..||..+++.  .+.       .. ..|.+
T Consensus       484 ~~~~~~~~~~~----~~~~~i~~i~~d~~g~lWigt---------~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~  547 (795)
T 4a2l_A          484 TTIEKEKDGTP----VVSKQITTLFRDSHKRLWIGG---------E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNC  547 (795)
T ss_dssp             EECCBCTTCCB----CCCCCEEEEEECTTCCEEEEE---------S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEE
T ss_pred             EEccccccccc----cCCceEEEEEECCCCCEEEEe---------C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEE
Confidence            32211100000    011123345667777755442         2 5688899877655  222       11 23899


Q ss_pred             EEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         266 LAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       266 ~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +...++|.+.+ |+. . -|..||..+.+
T Consensus       548 i~~d~~g~lWi-gT~-~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          548 IYEASNGIIWV-GTR-E-GFYCFNEKDKQ  573 (795)
T ss_dssp             EEECTTSCEEE-EES-S-CEEEEETTTTE
T ss_pred             EEECCCCCEEE-EeC-C-CceeECCCCCc
Confidence            99988887544 554 4 57788876543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.44  E-value=0.028  Score=52.62  Aligned_cols=160  Identities=10%  Similarity=0.090  Sum_probs=100.7

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-------cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-------AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~  189 (297)
                      ...|.++...++|.+.+ |..+ -|.+||..+++......       -....|.++...++|.+. .|+.++-|..|+..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCC
Confidence            35689999998887544 4445 58899987765433211       123569999999988755 46666778888875


Q ss_pred             CCceeeeeeccC-CCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc---------
Q psy3337         190 NGSLSKELKWNT-PDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM---------  259 (297)
Q Consensus       190 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~---------  259 (297)
                      ++.. ..+.... +..    .....+..+...++|...+         |+.++-|..||..+++.......         
T Consensus       339 ~~~~-~~~~~~~~~~~----l~~~~V~~i~~d~~g~lWi---------Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          339 RNRF-KNIRNIPYKNS----LSDNVVSCIVEDKDKNLWI---------GTNDGGLNLYNPITQRFTSYTLQEDESARGIG  404 (795)
T ss_dssp             GGSS-EEECCCTTSSS----CSCSSEEEEEECTTSCEEE---------EESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred             cccc-eEEcCCCCCCC----CCCCeeEEEEECCCCCEEE---------EECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence            5432 2221110 000    0112233466677776444         33467899999887654433211         


Q ss_pred             CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         260 KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       260 ~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ...|.++...++|+.|.+|+. ++-|.+||..+++
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~-~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTH-AGGLSILHRNSGQ  438 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEET-TTEEEEEETTTCC
T ss_pred             CccEEEEEEcCCCCEEEEEeC-cCceeEEeCCCCc
Confidence            233999999989886777887 7889999987654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.40  E-value=0.024  Score=47.60  Aligned_cols=159  Identities=13%  Similarity=0.152  Sum_probs=88.7

Q ss_pred             EEEEecCCCEEEEE------------cCCCcEEEEeCCC--Ceee-EEecc-----ccCCeeEEEEcc--CCC-EEEEE-
Q psy3337         122 VVRLSRNGDLMVTG------------GTDGHLRLWSFPK--MKPL-LHIEA-----HSKEIDDVDFSI--SGE-QIVSI-  177 (297)
Q Consensus       122 ~~~~s~~g~~l~s~------------~~d~~i~iwd~~~--~~~~-~~~~~-----~~~~v~~~~~sp--~~~-~l~s~-  177 (297)
                      .+...|+|..++++            ..+|.|.++|+.+  ++.. ..+.+     .......+.+.+  ++. +|+.+ 
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn  133 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  133 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence            55567776555554            2689999999873  2221 12222     234567788766  454 34443 


Q ss_pred             eC--CCcEEEEEcCCCc-ee---eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc---------ccccCCCCe
Q psy3337         178 AK--DGKAFVWNSKNGS-LS---KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL---------AQNKRGISY  242 (297)
Q Consensus       178 ~~--d~~v~lwd~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~---------~~~g~~d~~  242 (297)
                      ..  +.+|.+|++.... ..   ..+... +        ....+.+...++|...++...-+         ...+...+.
T Consensus       134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~-~--------~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~  204 (355)
T 3sre_A          134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHK-L--------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  204 (355)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCT-T--------CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred             CCCCCCeEEEEEEECCCCEEEEEeccccC-C--------CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence            22  4677787765432 21   122111 1        11234577788888666533100         001223466


Q ss_pred             EEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         243 VQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      |+.+|..  +.......-...+.++||||++.|+.+....+.|+.|++.
T Consensus       205 vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          205 VTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            7777663  3333333334479999999999887766437899999985

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.037  Score=47.83  Aligned_cols=70  Identities=13%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             EEEEEEec-CCCEEEEEcCCCcEEEEeCCCCeeeEEec-cccCCeeEEEEccCCCEEEEE-eCCCcEEEEEcC
Q psy3337         120 QRVVRLSR-NGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGEQIVSI-AKDGKAFVWNSK  189 (297)
Q Consensus       120 v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~-~~d~~v~lwd~~  189 (297)
                      ...++++| +|.++++-..++.|..++...+....... ........++|+|++++|+.+ ...+.|..++..
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            35788999 77777777778899999987665422222 122346789999999955544 567889998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.32  E-value=0.017  Score=47.64  Aligned_cols=185  Identities=13%  Similarity=0.157  Sum_probs=106.1

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecC----CC--CcEEEEEE---ecCCCEEEEEc-------------CCCcEEEEeCC-
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAG----SE--SLQRVVRL---SRNGDLMVTGG-------------TDGHLRLWSFP-  147 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~----h~--~~v~~~~~---s~~g~~l~s~~-------------~d~~i~iwd~~-  147 (297)
                      +.-..++|.. +...+........+    ..  ..+..+.|   .|+++++++..             .+..|..||+. 
T Consensus        30 s~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~  109 (334)
T 2p9w_A           30 SNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPL  109 (334)
T ss_dssp             EETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSC
T ss_pred             EeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCc
Confidence            3334556655 55444433332212    11  13579999   68887777543             26779999998 


Q ss_pred             --CCeeeEEec--ccc-----------CCeeEEEEccCCCEEEEEeCC-CcEEEEEcCCCceeeeeeccCCCCceEEEEe
Q psy3337         148 --KMKPLLHIE--AHS-----------KEIDDVDFSISGEQIVSIAKD-GKAFVWNSKNGSLSKELKWNTPDNIKYLFKR  211 (297)
Q Consensus       148 --~~~~~~~~~--~~~-----------~~v~~~~~sp~~~~l~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  211 (297)
                        +++.+....  ...           ....+++..++|+..++++.. +.|...+.. |+.+..+....|...    ..
T Consensus       110 ~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~----~~  184 (334)
T 2p9w_A          110 SENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGG----QR  184 (334)
T ss_dssp             CTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSS----SC
T ss_pred             CCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcc----cc
Confidence              777665432  211           247899999999999988888 887777764 333333321211100    11


Q ss_pred             eeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce--EEEec-cC----CCeEEE-EEcCCCCEEEEEecCCC
Q psy3337         212 CRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL--RLARE-MK----ESLSAL-AVRDDGRFVAVGTMFTG  283 (297)
Q Consensus       212 ~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~-~~----~~v~~~-~~s~dg~~l~~~~~~dg  283 (297)
                      ..++-++++|+|..|+....        .+.|..+|+.....  +..-. +.    .....+ ..-.+|+.|+++....+
T Consensus       185 ~G~nGIv~~pdg~~Liv~~~--------~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~  256 (334)
T 2p9w_A          185 PGYSGITFDPHSNKLIAFGG--------PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPY  256 (334)
T ss_dssp             CSCSEEEEETTTTEEEEESS--------SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTE
T ss_pred             cCcceEEEeCCCCEEEEEcC--------CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCC
Confidence            22345889999998888543        89999999885322  21110 11    113343 33347777444443155


Q ss_pred             eEEEEE
Q psy3337         284 SVFVYI  289 (297)
Q Consensus       284 ~i~vwd  289 (297)
                      .+.+.+
T Consensus       257 ~~~l~S  262 (334)
T 2p9w_A          257 AISFRS  262 (334)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            555444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.29  E-value=0.043  Score=46.12  Aligned_cols=154  Identities=14%  Similarity=0.079  Sum_probs=80.9

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe-eeEEec---cccCCeeEEEEccC---CCEEEEEeC----C----Cc
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK-PLLHIE---AHSKEIDDVDFSIS---GEQIVSIAK----D----GK  182 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~sp~---~~~l~s~~~----d----~~  182 (297)
                      .....++|.|+|+++++ ..++.|+++| .+++ .+..+.   ........|+|+|+   +..|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            34579999999985555 5569999997 4454 222221   12346889999997   444444332    2    56


Q ss_pred             EEEEEcCCC--ce--eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc-----ccCCCCeEEEEeCCCC--
Q psy3337         183 AFVWNSKNG--SL--SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ-----NKRGISYVQQWDVDSG--  251 (297)
Q Consensus       183 v~lwd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~-----~g~~d~~i~~wd~~~~--  251 (297)
                      |..|+....  ..  ...+....|.. .    ...-..+.|.|||...++.....-.     ..+..+.|..++....  
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~-~----~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGA-Y----IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECC-S----SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCC-C----CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence            777776543  11  01110000000 0    0011347899999866664321000     0112356777776532  


Q ss_pred             ------ceEEEeccCCCeEEEEEcC-CCCEEEEE
Q psy3337         252 ------RLRLAREMKESLSALAVRD-DGRFVAVG  278 (297)
Q Consensus       252 ------~~~~~~~~~~~v~~~~~s~-dg~~l~~~  278 (297)
                            .....-.++.....++|+| +|.++++-
T Consensus       182 ~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             TTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEe
Confidence                  1111112344477899999 56655543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.28  E-value=0.036  Score=46.48  Aligned_cols=153  Identities=8%  Similarity=0.063  Sum_probs=80.8

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee--eEEec---cccCCeeEEEEccC---CCEEEEEeC-C-----CcEE
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP--LLHIE---AHSKEIDDVDFSIS---GEQIVSIAK-D-----GKAF  184 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~sp~---~~~l~s~~~-d-----~~v~  184 (297)
                      .-..++|.|+|+++++ ..++.|++++  +++.  +..+.   ........|+|+|+   +..|+.+.. .     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4579999999986655 4569999998  4432  22221   12346889999998   445544432 2     5677


Q ss_pred             EEEcCCCce--eeeeeccCC--CCceEEEEeeeeeeeeeCCCCeEEEEeccCccc-----ccCCCCeEEEEeCCCC----
Q psy3337         185 VWNSKNGSL--SKELKWNTP--DNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ-----NKRGISYVQQWDVDSG----  251 (297)
Q Consensus       185 lwd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~-----~g~~d~~i~~wd~~~~----  251 (297)
                      .|+...+..  ...+....|  .. .    ...-..++|.|||...++.....-.     ..+..+.|..++....    
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~-~----~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPH-G----LHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTT-C----CCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCC-C----CcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence            788764321  011100001  00 0    0011347899999765554321000     0012367777776530    


Q ss_pred             ---------ceEEEeccCCCeEEEEEcC-CCCEEEEEe
Q psy3337         252 ---------RLRLAREMKESLSALAVRD-DGRFVAVGT  279 (297)
Q Consensus       252 ---------~~~~~~~~~~~v~~~~~s~-dg~~l~~~~  279 (297)
                               .....-.++.....++|+| +|.++++-.
T Consensus       184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred             CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence                     1111112334478899999 566555443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.19  E-value=0.07  Score=45.60  Aligned_cols=146  Identities=16%  Similarity=0.173  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc----cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--------
Q psy3337         127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH----SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS--------  194 (297)
Q Consensus       127 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~--------  194 (297)
                      .+|..++.+ .++.||.-++.....-+.+...    -..+..+..+|+|++||..+ +..|.|-.+..+...        
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            355555554 3467777777643333333322    22578899999999999875 458888888633211        


Q ss_pred             ----eeeeccCCCCceEEEEeeeeeeeeeCCCC---eEEEEeccCcccccCCCCeEEEEeCCCC--ceEEEec------c
Q psy3337         195 ----KELKWNTPDNIKYLFKRCRYGLVEDSPKR---SRLFTLANPLAQNKRGISYVQQWDVDSG--RLRLARE------M  259 (297)
Q Consensus       195 ----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~~~~~~g~~d~~i~~wd~~~~--~~~~~~~------~  259 (297)
                          +.+.... .   .......+..+.|+|-+   ..|++...        |+.|++||+...  ++. .+.      +
T Consensus       108 ~~q~~ty~l~~-~---~~~~~s~I~qVlWHPl~~~ds~LVVLts--------D~~Ir~yDl~~s~~~P~-~L~k~~~~fg  174 (452)
T 3pbp_A          108 AFQIFHYSIDE-E---EVGPKSSIKKVLFHPKSYRDSCIVVLKE--------DDTITMFDILNSQEKPI-VLNKPNNSFG  174 (452)
T ss_dssp             TTEEEEEEGGG-C---C--CCCCEEEEEECTTBGGGCEEEEEET--------TSCEEEEETTCTTSCCE-EESCCCSEEE
T ss_pred             ccceeEEEcCC-c---ccCCCCceeEEEeccccCCCCeEEEEec--------CCEEEEEEcccCCCCCc-chhccccccC
Confidence                1111110 0   00012345668889864   46777766        999999999862  222 221      1


Q ss_pred             ---C-CCeEEEEEcCCCCEEEEEe--cCCCeEEEE
Q psy3337         260 ---K-ESLSALAVRDDGRFVAVGT--MFTGSVFVY  288 (297)
Q Consensus       260 ---~-~~v~~~~~s~dg~~l~~~~--~~dg~i~vw  288 (297)
                         . ..|.+++|.+++-.|...+  . +|.|+-.
T Consensus       175 ~d~~~~ev~S~~Fg~~~lTLYvl~~t~-~GDIYAl  208 (452)
T 3pbp_A          175 LDARVNDITDLEFSKDGLTLYCLNTTE-GGDIFAF  208 (452)
T ss_dssp             SCSSCCCEEEEEECTTSSCEEEEECTT-SCEEEEE
T ss_pred             CCcccceEEEEEEcCCCcEEEEEecCC-CCCEEEE
Confidence               1 2389999999888777755  7 7887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.10  E-value=0.053  Score=49.23  Aligned_cols=159  Identities=9%  Similarity=-0.042  Sum_probs=93.0

Q ss_pred             CcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q psy3337         118 SLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLS  194 (297)
Q Consensus       118 ~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~  194 (297)
                      .....+++.+.+ +++++-...+.|.+.++........+...-.....|++.|.+..|+.+..  .+.|...++. |...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSR  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCce
Confidence            456789999855 45556667789999998654332223234455789999997666665553  3566666664 3322


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CCeEEEEEcCCCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ESLSALAVRDDGR  273 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~dg~  273 (297)
                      ..+.... .  .      .-..+++++++..|+.+..       ..+.|..+|+............ ....++++..+  
T Consensus       163 ~~l~~~~-~--~------~P~Glald~~~~~LY~aD~-------~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--  224 (619)
T 3s94_A          163 FIIINSE-I--Y------WPNGLTLDYEEQKLYWADA-------KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--  224 (619)
T ss_dssp             EEEECSS-C--S------SEEEEEEETTTTEEEEEET-------TTCCEEEESSSCCEEC---------CCCEEESSS--
T ss_pred             EEEEeCC-C--C------CCcEEEEEccCCEEEEEeC-------CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--
Confidence            2222110 0  0      1123778887777777643       3578999998753322222211 12567777655  


Q ss_pred             EEEEEecCCCeEEEEEeCCcee
Q psy3337         274 FVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       274 ~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .|+.+....+.|...|..+++.
T Consensus       225 ~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          225 ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEEecCCCCEEEEEECCCCcc
Confidence            5555554378899999877753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.09  E-value=0.094  Score=43.39  Aligned_cols=164  Identities=12%  Similarity=0.122  Sum_probs=91.3

Q ss_pred             CCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC--CCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCc
Q psy3337         105 TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF--PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK  182 (297)
Q Consensus       105 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~  182 (297)
                      .|+....+..++...+..+.+.|++.+++.+...+..+-+|-  .+.+.+.  ......+..+.+.+++++++ ++.+|.
T Consensus       150 gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~  226 (327)
T 2xbg_A          150 SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGK  226 (327)
T ss_dssp             TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTE
T ss_pred             CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCce
Confidence            344444443355667889999999888877654433344442  2333332  23456788999999887664 456787


Q ss_pred             EEEEEcCCCceeeeeecc-CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc--
Q psy3337         183 AFVWNSKNGSLSKELKWN-TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM--  259 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~--  259 (297)
                      +++.+...++.-..+... .+..       ..+..+.+.+++..++...         ++.| .+..+.|+.-..+..  
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~g~---------~g~i-~~S~DgG~tW~~~~~~~  289 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNS-------VGFLDLAYRTPNEVWLAGG---------AGAL-LCSQDGGQTWQQDVDVK  289 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCC-------SCEEEEEESSSSCEEEEES---------TTCE-EEESSTTSSCEECGGGT
T ss_pred             EEEecCCCCCeeEeccCCcccCC-------cceEEEEecCCCEEEEEeC---------CCeE-EEeCCCCcccEEcCccC
Confidence            777643324333322211 0110       0123456777766555422         4555 344454554444432  


Q ss_pred             --CCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         260 --KESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       260 --~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                        +..+.++.|.+++..++ ++. +|.|.-++-
T Consensus       290 ~~~~~~~~v~~~~~~~~~~-~G~-~G~i~~~~~  320 (327)
T 2xbg_A          290 KVPSNFYKILFFSPDQGFI-LGQ-KGILLRYVT  320 (327)
T ss_dssp             TSSSCCCEEEEEETTEEEE-ECS-TTEEEEECC
T ss_pred             CCCCCeEEEEEECCCceEE-EcC-CceEEEEcC
Confidence              23488898886666554 455 888876653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.01  E-value=0.15  Score=44.38  Aligned_cols=169  Identities=9%  Similarity=0.089  Sum_probs=87.8

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee--eEEecc------ccCCeeEEEEccC---CCEEEEEe-C------
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP--LLHIEA------HSKEIDDVDFSIS---GEQIVSIA-K------  179 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~~------~~~~v~~~~~sp~---~~~l~s~~-~------  179 (297)
                      ...+.++|.|+|+++++-...+.|++++..+++.  +..+..      ....+..|+|+|+   +..|+.+. .      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3457999999999777765545788887655543  222321      2356779999995   44444433 2      


Q ss_pred             ------CCcEEEEEcCCC--ce--eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc--------------
Q psy3337         180 ------DGKAFVWNSKNG--SL--SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ--------------  235 (297)
Q Consensus       180 ------d~~v~lwd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~--------------  235 (297)
                            ...|.-|++..+  ..  ...+....|.. .    ...-..|.|.|||.+.++....-..              
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~----~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~  181 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-K----DHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHT  181 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-S----SCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-C----CCCCCeEeECCCCeEEEEECCCCCCCccccccccccccc
Confidence                  124555554322  11  11111000100 0    0112458899999877776541000              


Q ss_pred             -------c---cCCCCeEEEEeCCCC----c------eEEEe-ccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         236 -------N---KRGISYVQQWDVDSG----R------LRLAR-EMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       236 -------~---g~~d~~i~~wd~~~~----~------~~~~~-~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                             .   .+..+.|.-++....    .      ....+ .++.....++|+|+|.+.++-...++.-.|.-+.
T Consensus       182 p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~~~~dein~i~  258 (454)
T 1cru_A          182 PTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIV  258 (454)
T ss_dssp             CCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred             cccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence                   0   011356666665432    0      11122 2445589999999887665543214444444443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.00  E-value=0.053  Score=45.52  Aligned_cols=154  Identities=8%  Similarity=-0.046  Sum_probs=77.6

Q ss_pred             cEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeee---EEe----ccccCCeeEEEEccC---CCEEEEE-eC-------
Q psy3337         119 LQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPL---LHI----EAHSKEIDDVDFSIS---GEQIVSI-AK-------  179 (297)
Q Consensus       119 ~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~---~~~----~~~~~~v~~~~~sp~---~~~l~s~-~~-------  179 (297)
                      ....++|.|+|+ ++++ ...+.|++++.. +...   ..+    .........|+|+|+   +..|+.+ ..       
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            357999999998 5554 567899999853 3321   111    112345789999995   4444433 22       


Q ss_pred             CCcEEEEEcCCCc----eeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcc-----cccCCCCeEEEEeCCC
Q psy3337         180 DGKAFVWNSKNGS----LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA-----QNKRGISYVQQWDVDS  250 (297)
Q Consensus       180 d~~v~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~-----~~g~~d~~i~~wd~~~  250 (297)
                      ...|..|++..+.    ....+....|....   ....-..+.|.|||.+.++.....-     -..+..+.|.-++...
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLST---GNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBS---SSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCC---CcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence            2346666664321    11111100010000   0000124789999976666433000     0001235777777653


Q ss_pred             Cc------------eEEEe-ccCCCeEEEEEcC-CCCEEEE
Q psy3337         251 GR------------LRLAR-EMKESLSALAVRD-DGRFVAV  277 (297)
Q Consensus       251 ~~------------~~~~~-~~~~~v~~~~~s~-dg~~l~~  277 (297)
                      .-            ....+ .++.....++|+| +|++.++
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence            20            11111 2344488999999 5554443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.98  E-value=0.13  Score=43.05  Aligned_cols=157  Identities=11%  Similarity=0.039  Sum_probs=85.8

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee--eEEe----ccccCCeeEEEEccC---CCEEEEE-e--CCCc
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP--LLHI----EAHSKEIDDVDFSIS---GEQIVSI-A--KDGK  182 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~sp~---~~~l~s~-~--~d~~  182 (297)
                      ..-..-+.++|.|||+++++--..|.|++++...++.  +..+    .........|+|+|+   ...|+.. +  .+..
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3344567999999999888776689999998665543  2222    123456889999995   3334332 2  3445


Q ss_pred             EEEEEcCCCc----e---eee-eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc-----cCCCCeEEEEeCC
Q psy3337         183 AFVWNSKNGS----L---SKE-LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN-----KRGISYVQQWDVD  249 (297)
Q Consensus       183 v~lwd~~~~~----~---~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~-----g~~d~~i~~wd~~  249 (297)
                      |.-|.+..+.    .   ... +... |..     ....-..|.|.|||.+.++.....-..     .+..+.|.-.+..
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~-p~~-----~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGI-PKG-----VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEE-CCC-----SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcC-CCC-----CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence            6556554321    0   011 1100 000     000113488999998777764310000     0124566666665


Q ss_pred             CC--------c-eEEEeccCCCeEEEEEcCCCCEEEEE
Q psy3337         250 SG--------R-LRLAREMKESLSALAVRDDGRFVAVG  278 (297)
Q Consensus       250 ~~--------~-~~~~~~~~~~v~~~~~s~dg~~l~~~  278 (297)
                      ..        . .+. -.++.....++|+|+|.+.++=
T Consensus       183 G~ip~~nPf~~~~i~-a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          183 GEPAPGNPFPGSPVY-SYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             SSBCTTCSSTTCCEE-EBCCSBCCEEEECTTCCEEEEE
T ss_pred             CCccCCCCCCCCeEE-eeCCCCcceEEECCCCCEEEEe
Confidence            32        1 111 1244457899999987766543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.96  E-value=0.21  Score=45.34  Aligned_cols=155  Identities=8%  Similarity=-0.093  Sum_probs=93.6

Q ss_pred             cEEEEEEecCCC-EEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceee
Q psy3337         119 LQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLSK  195 (297)
Q Consensus       119 ~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~~  195 (297)
                      ....+++.+.+. +.++-...+.|.+.++........+...-....+|++.|....|+.+..  .+.|...++.... ..
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~  159 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RT  159 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eE
Confidence            356888887654 5556666788999998644322223233456789999996556665553  4567777765332 22


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC-CCeEEEEEcCCCCE
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK-ESLSALAVRDDGRF  274 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~dg~~  274 (297)
                      .+....          ..-..+++++++..|+.+..       ..+.|..+|+..... ..+... ....++++.. + .
T Consensus       160 ~l~~~~----------~~P~GlalD~~~~~LY~aD~-------~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~  219 (628)
T 4a0p_A          160 TLVPNV----------GRANGLTIDYAKRRLYWTDL-------DTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-Y  219 (628)
T ss_dssp             EEECSC----------SSEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-E
T ss_pred             EEECCC----------CCcceEEEccccCEEEEEEC-------CCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-E
Confidence            221110          01123778888777777643       367899999976433 233222 2367888864 3 4


Q ss_pred             EEEEecCCCeEEEEEeCCce
Q psy3337         275 VAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       275 l~~~~~~dg~i~vwd~~~~~  294 (297)
                      |+......+.|...|..+++
T Consensus       220 ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          220 IYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEETTTTEEEEEETTTCC
T ss_pred             EEEecCCCCEEEEEECCCCC
Confidence            54444437889999876664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.90  E-value=0.015  Score=53.15  Aligned_cols=120  Identities=8%  Similarity=-0.008  Sum_probs=70.9

Q ss_pred             EEEEec-CCCEEEEEcCCC-----------cEEEEeCCCCe--eeEEecc-ccCCeeEEEEccCCCEEEEEeC-CCcEEE
Q psy3337         122 VVRLSR-NGDLMVTGGTDG-----------HLRLWSFPKMK--PLLHIEA-HSKEIDDVDFSISGEQIVSIAK-DGKAFV  185 (297)
Q Consensus       122 ~~~~s~-~g~~l~s~~~d~-----------~i~iwd~~~~~--~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~-d~~v~l  185 (297)
                      ++++.| +++.++.|+.+.           .+.+||+.+++  .+..+.. +.....++++.+++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            567777 888888887543           58899987765  2333322 2333446788889999999984 468999


Q ss_pred             EEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc
Q psy3337         186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR  252 (297)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~  252 (297)
                      ||+.+.+-...-.  .+....       ...++..++++.++..+..  -.+..-..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~--~~~~R~-------~~s~~~~~dg~iyv~GG~~--~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPD--MQVARG-------YQSSATMSDGRVFTIGGSW--SGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCC--CSSCCS-------SCEEEECTTSCEEEECCCC--CSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCC--CCcccc-------ccceEEecCCeEEEEeCcc--cCCcccccceEeCCCCCc
Confidence            9988664332211  111100       0123345677766663310  000112579999998755

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.77  E-value=0.25  Score=43.33  Aligned_cols=115  Identities=16%  Similarity=0.078  Sum_probs=66.8

Q ss_pred             cEEEEEE-------ecCCCEEEEEcCCC-------cEEEEeCCC-Ceee-----EEeccccCCeeEEEEccC-CCEEEEE
Q psy3337         119 LQRVVRL-------SRNGDLMVTGGTDG-------HLRLWSFPK-MKPL-----LHIEAHSKEIDDVDFSIS-GEQIVSI  177 (297)
Q Consensus       119 ~v~~~~~-------s~~g~~l~s~~~d~-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~sp~-~~~l~s~  177 (297)
                      ....++|       +++|++|+.+...+       .|.+++... +...     ..+.. ......++++|+ +.++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEE
Confidence            4789999       99998666555443       266665433 2221     22221 124567899995 5555556


Q ss_pred             eCCCcEEEEEcC-------CCce-----------eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         178 AKDGKAFVWNSK-------NGSL-----------SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       178 ~~d~~v~lwd~~-------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      ..++.|..+|+.       ++..           ...+. ..+.. .      .-..++++|+|..|+.+..       .
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-~~~~~-~------~p~~ia~~p~G~~lYvaD~-------~  330 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-TIADP-S------WEFQIFIHPTGKYAYFGVI-------N  330 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-ECSSS-S------CCEEEEECTTSSEEEEEET-------T
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeE-ecCCC-C------CceEEEEcCCCCEEEEEeC-------C
Confidence            677889999987       4443           11111 00110 0      1124889999997666532       3


Q ss_pred             CCeEEEEeCC
Q psy3337         240 ISYVQQWDVD  249 (297)
Q Consensus       240 d~~i~~wd~~  249 (297)
                      .+.|+.++..
T Consensus       331 ~h~I~kid~d  340 (496)
T 3kya_A          331 NHYFMRSDYD  340 (496)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEecC
Confidence            6788886654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.32  Score=45.31  Aligned_cols=154  Identities=14%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe---ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI---EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~  194 (297)
                      ..|.++...++|+ |..|..++-|..||..++......   ......|.++...+++.+.+ |+.++-|..+|..+++..
T Consensus       363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            5688998888876 556665666888997654322111   12345688999888887555 666667889998766432


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC------CCeEEEEE
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK------ESLSALAV  268 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~------~~v~~~~~  268 (297)
                       .+.... ..      ...+..+...+++...+.         +. +.|..||..+++........      ..|.++..
T Consensus       441 -~~~~~~-~~------~~~v~~i~~d~~g~lwig---------t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          441 -IIELEK-NE------LLDVRVFYEDKNKKIWIG---------TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             -ECCSTT-TC------CCCEEEEEECTTSEEEEE---------ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             -EeccCC-CC------CCeEEEEEECCCCCEEEE---------EC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence             221110 00      012223556777765543         22 56889998876544332221      33899999


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      .++|.+.+. +. ++-|..||..+.
T Consensus       503 d~~g~lWig-t~-~~Gl~~~~~~~~  525 (781)
T 3v9f_A          503 DSEGRFWIG-TF-GGGVGIYTPDMQ  525 (781)
T ss_dssp             CTTCCEEEE-ES-SSCEEEECTTCC
T ss_pred             cCCCCEEEE-Ec-CCCEEEEeCCCC
Confidence            988876554 43 445777876554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.68  E-value=0.13  Score=43.94  Aligned_cols=141  Identities=16%  Similarity=0.122  Sum_probs=86.4

Q ss_pred             CCceEEE-EeeCCCeEEEEecCC---CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe------------eeEEecc-
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGS---ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK------------PLLHIEA-  157 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~-  157 (297)
                      .++.||. ++..+...+.+...+   -..|..+..||+|++||..+ +..|.|-.+..+.            ..+.+.- 
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            3567887 666444555555221   22477899999999999875 5578888876321            1122221 


Q ss_pred             -----ccCCeeEEEEcc---CCCEEEEEeCCCcEEEEEcCCCc--eeeeeeccCCCCceEEE--EeeeeeeeeeCCCCeE
Q psy3337         158 -----HSKEIDDVDFSI---SGEQIVSIAKDGKAFVWNSKNGS--LSKELKWNTPDNIKYLF--KRCRYGLVEDSPKRSR  225 (297)
Q Consensus       158 -----~~~~v~~~~~sp---~~~~l~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~  225 (297)
                           ...+|..+.|+|   .+..|++-..|+.|++||+....  +. .+.-..  . .+..  ....+.+++|.+++-.
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~--~-~fg~d~~~~ev~S~~Fg~~~lT  193 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPN--N-SFGLDARVNDITDLEFSKDGLT  193 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCC--S-EEESCSSCCCEEEEEECTTSSC
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccc--c-ccCCCcccceEEEEEEcCCCcE
Confidence                 246799999999   45689999999999999997522  22 232110  0 1100  0023446788888877


Q ss_pred             EEEeccCcccccCCCCeEEEE
Q psy3337         226 LFTLANPLAQNKRGISYVQQW  246 (297)
Q Consensus       226 l~~~~~~~~~~g~~d~~i~~w  246 (297)
                      |+.+..      +..|.|+-.
T Consensus       194 LYvl~~------t~~GDIYAl  208 (452)
T 3pbp_A          194 LYCLNT------TEGGDIFAF  208 (452)
T ss_dssp             EEEEEC------TTSCEEEEE
T ss_pred             EEEEec------CCCCCEEEE
Confidence            777441      235666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.52  E-value=0.31  Score=45.47  Aligned_cols=155  Identities=12%  Similarity=0.087  Sum_probs=90.8

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc-----cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH-----SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~  191 (297)
                      ...|.++...++|++. .|.. +-|..||..+++........     ...|.++...+++++.+. +.++-|..||..++
T Consensus       449 ~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~  525 (781)
T 3v9f_A          449 LLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQ  525 (781)
T ss_dssp             CCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCC
T ss_pred             CCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCC
Confidence            4578899888887644 4444 56888998776543322211     357899999988876654 44344778887665


Q ss_pred             ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEec--c-C-CCeEEEE
Q psy3337         192 SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLARE--M-K-ESLSALA  267 (297)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~--~-~-~~v~~~~  267 (297)
                      +. ..+......      ....+..+...++|...+..         ..|-|..||..+++....-.  + . ..|.++.
T Consensus       526 ~~-~~~~~~~~l------~~~~i~~i~~d~~g~lWi~T---------~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~  589 (781)
T 3v9f_A          526 LV-RKFNQYEGF------CSNTINQIYRSSKGQMWLAT---------GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAIS  589 (781)
T ss_dssp             EE-EEECTTTTC------SCSCEEEEEECTTSCEEEEE---------TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEE
T ss_pred             eE-EEccCCCCC------CCCeeEEEEECCCCCEEEEE---------CCCceEEECCCCCcEEEccccCCCCCceEEEEE
Confidence            43 333211100      11123345567777755542         24444888887765432211  1 1 2388888


Q ss_pred             EcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         268 VRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       268 ~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      ..++|.+.+++ . +| |..|+..+.
T Consensus       590 ~d~~g~lW~~t-~-~G-l~~~~~~~~  612 (781)
T 3v9f_A          590 EDKNGNIWAST-N-TG-ISCYITSKK  612 (781)
T ss_dssp             ECSSSCEEEEC-S-SC-EEEEETTTT
T ss_pred             ECCCCCEEEEc-C-Cc-eEEEECCCC
Confidence            88888765554 3 55 666676544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.31  E-value=0.4  Score=40.17  Aligned_cols=165  Identities=8%  Similarity=0.036  Sum_probs=93.0

Q ss_pred             CCceEEE-EeeC--CCeEEEEe-cC-----CCCcEEEEEEec--CCC-EE-EEEcC--CCcEEEEeCCCC--e--eeEEe
Q psy3337          95 KEKNLRF-GFKT--FDSVQTVF-AG-----SESLQRVVRLSR--NGD-LM-VTGGT--DGHLRLWSFPKM--K--PLLHI  155 (297)
Q Consensus        95 ~d~~i~~-~~~~--~~~~~~~~-~~-----h~~~v~~~~~s~--~g~-~l-~s~~~--d~~i~iwd~~~~--~--~~~~~  155 (297)
                      .++.|.+ ++.+  ++. ..+. .+     ..-....+.+.+  ++. +| ++-..  +..|.+|++...  .  .+..+
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            5677777 8763  332 2222 13     123567788766  453 34 44333  467788776532  2  23344


Q ss_pred             ccc-cCCeeEEEEccCCCEEEEEeC---C--------------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeee
Q psy3337         156 EAH-SKEIDDVDFSISGEQIVSIAK---D--------------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLV  217 (297)
Q Consensus       156 ~~~-~~~v~~~~~sp~~~~l~s~~~---d--------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (297)
                      .+. -...+++.+.++|+++++...   |              +.|+.+|.  ++ +..+.          -....-+.+
T Consensus       160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~----------~~l~~pNGi  226 (355)
T 3sre_A          160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVA----------EGFDFANGI  226 (355)
T ss_dssp             CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEE----------EEESSEEEE
T ss_pred             ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEee----------cCCcccCcc
Confidence            332 235789999999988777541   1              33444443  21 11111          011122458


Q ss_pred             eeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-Cce--EEEeccCCCeEEEEEcC-CCCEEEEEec
Q psy3337         218 EDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRL--RLAREMKESLSALAVRD-DGRFVAVGTM  280 (297)
Q Consensus       218 ~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~--~~~~~~~~~v~~~~~s~-dg~~l~~~~~  280 (297)
                      +|+||++.++.+..       ..+.|+.|++.. ++.  ...+......-.+++.+ +|++.+++..
T Consensus       227 a~spDg~~lYvadt-------~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          227 NISPDGKYVYIAEL-------LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             EECTTSSEEEEEEG-------GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             eECCCCCEEEEEeC-------CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecC
Confidence            99999998888653       357899999864 432  22343333378899999 5988776654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.11  E-value=0.12  Score=40.00  Aligned_cols=139  Identities=9%  Similarity=-0.038  Sum_probs=77.4

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeee------EEec--cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL------LHIE--AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~------~~~~--~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      .+..++|+|+|.+.+.  .+|.++-.+..+....      ..+-  +-. ...++.|.|+|.+.++  .||.|+-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5679999999986666  6777766665442211      1110  111 1478999999988777  569888877543


Q ss_pred             CceeeeeeccCCCCceEEEEe---eeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc------eEEEec-cC
Q psy3337         191 GSLSKELKWNTPDNIKYLFKR---CRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR------LRLARE-MK  260 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~------~~~~~~-~~  260 (297)
                      ...-.-+..      ...+..   ..+..|.+.|+|...+..          ++.++-+...++.      ....+- ..
T Consensus       117 ~~~~~Wl~~------a~~vg~~gw~~~~~lff~p~G~Lyav~----------dg~lyr~~~P~~~~~~wl~~~~~~g~~g  180 (236)
T 1tl2_A          117 SDTDNWIAR------ATEVGSGGWSGFKFLFFHPNGYLYAVH----------GQQFYKALPPVSNQDNWLARATKIGQGG  180 (236)
T ss_dssp             STTCCHHHH------SEEEECSSGGGEEEEEECTTSCEEEEE----------TTEEEEECCCSSTTCCHHHHCEEEESSS
T ss_pred             CCCCceecc------ccEeccCCCCceEEEEECCCceEEEEe----------CCcEEecCCCCCCCcccccccceeccCC
Confidence            211111100      001100   134457889999866553          4566554444322      111221 12


Q ss_pred             CC-eEEEEEcCCCCEEEEE
Q psy3337         261 ES-LSALAVRDDGRFVAVG  278 (297)
Q Consensus       261 ~~-v~~~~~s~dg~~l~~~  278 (297)
                      .. -+-+.|+++|.+.++.
T Consensus       181 ~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          181 WDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             GGGEEEEEECTTSCEEEEE
T ss_pred             cceEEEEEECCCCcEEEEe
Confidence            22 4557788888877665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.81  E-value=0.64  Score=38.27  Aligned_cols=145  Identities=14%  Similarity=0.100  Sum_probs=78.8

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEE-EEeCCCCeee-EEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLR-LWSFPKMKPL-LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS  194 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~-iwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~  194 (297)
                      ...+..+.+.+++..++.+. ++.|. -.|  .++.- .....+...+..+.+.|++.+++.+...+..+-+|- .+..-
T Consensus       121 ~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW  196 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAW  196 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSC
T ss_pred             CCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCce
Confidence            34577888887777666654 55543 233  23221 112234557889999999888776654443333442 12222


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-----CCCeEEEEEc
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-----KESLSALAVR  269 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-----~~~v~~~~~s  269 (297)
                      ..+....+         ..+..+.+.+++..++. ..        ++.+++.+...++.-..+..     ...+.++.+.
T Consensus       197 ~~~~~~~~---------~~~~~~~~~~~g~~~~~-~~--------~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          197 EPHNRTTS---------RRLHNMGFTPDGRLWMI-VN--------GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             EEEECCSS---------SCEEEEEECTTSCEEEE-ET--------TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             eECCCCCC---------CccceeEECCCCCEEEE-eC--------CceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            22211111         12234667888865544 22        56777664333433333221     1238899999


Q ss_pred             CCCCEEEEEecCCCeE
Q psy3337         270 DDGRFVAVGTMFTGSV  285 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i  285 (297)
                      +++..++++.  +|.|
T Consensus       259 ~~~~~~~~g~--~g~i  272 (327)
T 2xbg_A          259 TPNEVWLAGG--AGAL  272 (327)
T ss_dssp             SSSCEEEEES--TTCE
T ss_pred             CCCEEEEEeC--CCeE
Confidence            8888777665  5665

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.072  Score=44.34  Aligned_cols=148  Identities=11%  Similarity=0.144  Sum_probs=81.5

Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeeEEecccc-CCeeEEEE--cc-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeccCCCC
Q psy3337         130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHS-KEIDDVDF--SI-SGEQIVSI-AKDGKAFVWNSKNGSLSKELKWNTPDN  204 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--sp-~~~~l~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~  204 (297)
                      ..++.++.||.|.-+|..+|+.+..+.... .++....-  .+ ++..++.. +.||.|+.++..+|.....+.......
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            368888999999999999999998886541 22221110  01 22333333 589999999998885544333221000


Q ss_pred             c-eEEEEeeeeeeeeeC----CCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC--------eEEEEEc--
Q psy3337         205 I-KYLFKRCRYGLVEDS----PKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES--------LSALAVR--  269 (297)
Q Consensus       205 ~-~~~~~~~~~~~~~~s----~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~--------v~~~~~s--  269 (297)
                      . .+......   +...    ..+..+++        |+.++.+...|+.+|+.+..+.....        ..|....  
T Consensus        91 ~SP~~~~~~p---vv~~~~~~~~~g~Vy~--------Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~  159 (339)
T 2be1_A           91 TSPLHLKTNI---VVNDSGKIVEDEKVYT--------GSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKI  159 (339)
T ss_dssp             TCSEEEECC-------------CCEEEEE--------CEEEEEEEEEETTTCCEEEEESTTCBCC---------------
T ss_pred             ccccccCCCc---eeecccccccCCEEEE--------EecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccc
Confidence            0 01100000   0000    13445666        55699999999999999988865421        0111111  


Q ss_pred             ---CCCCEEEEEecCCCeEEEEE
Q psy3337         270 ---DDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       270 ---~dg~~l~~~~~~dg~i~vwd  289 (297)
                         ..+..|+.+.. +..+.+.+
T Consensus       160 ~~d~~~~~v~ig~~-~y~v~~~~  181 (339)
T 2be1_A          160 KLQECENMIVIGKT-IFELGIHS  181 (339)
T ss_dssp             -----CCEEEEEEE-EEECEECC
T ss_pred             ccccCCCeEEEecc-eEEEEEEC
Confidence               12356776666 66666644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.71  E-value=0.64  Score=37.49  Aligned_cols=149  Identities=13%  Similarity=0.078  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCC-----CcEEEEeCCCCe--eeEEeccccCCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceee
Q psy3337         128 NGDLMVTGGTD-----GHLRLWSFPKMK--PLLHIEAHSKEIDDVDFSISGEQIVSIAKD-----GKAFVWNSKNGSLSK  195 (297)
Q Consensus       128 ~g~~l~s~~~d-----~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----~~v~lwd~~~~~~~~  195 (297)
                      ++..++.|+.+     ..+.+||+.+.+  .+..+.........+.  -++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            67777777654     358889987654  2222221111112222  266677777654     458889987764332


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC-CCCeEEEEeCCCCceEEE--eccCCCeEEEEEcCCC
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR-GISYVQQWDVDSGRLRLA--REMKESLSALAVRDDG  272 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~-~d~~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~dg  272 (297)
                      . . ..|.....      ...+.+  ++..++..+..    +. ....+.+||+.+.+-...  +.....-.+++. -++
T Consensus       190 ~-~-~~p~~r~~------~~~~~~--~~~i~v~GG~~----~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~  254 (301)
T 2vpj_A          190 V-T-PMATKRSG------AGVALL--NDHIYVVGGFD----GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRG  254 (301)
T ss_dssp             E-C-CCSSCCBS------CEEEEE--TTEEEEECCBC----SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT
T ss_pred             C-C-CCCccccc------ceEEEE--CCEEEEEeCCC----CCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECC
Confidence            2 1 11111000      001111  34433332210    00 135799999987543222  221111112222 267


Q ss_pred             CEEEEEecCC-----CeEEEEEeCCce
Q psy3337         273 RFVAVGTMFT-----GSVFVYIAFSLQ  294 (297)
Q Consensus       273 ~~l~~~~~~d-----g~i~vwd~~~~~  294 (297)
                      ++++.|+. +     ..+.+||+.+.+
T Consensus       255 ~i~v~GG~-~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          255 RLYAIAGY-DGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEEEECCB-CSSSBEEEEEEEETTTTE
T ss_pred             EEEEEcCc-CCCcccccEEEEcCCCCe
Confidence            78788775 5     467888887643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.70  E-value=0.14  Score=45.32  Aligned_cols=106  Identities=10%  Similarity=0.056  Sum_probs=68.9

Q ss_pred             CCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCce-----e----eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         160 KEIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSL-----S----KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      .....+.++|||++++.++ .+.++.++|++.-..     +    ..+....+.+..       -...+|.++|....++
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG-------PlHt~Fd~~G~aYTtl  395 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG-------PLHTTFDGRGNAYTTL  395 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC-------EEEEEECSSSEEEEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc-------ccEEEECCCCceEeee
Confidence            3456789999999988776 478999999863211     0    001111111101       1136789999655555


Q ss_pred             ccCcccccCCCCeEEEEeCCCC----------ceEEEeccCCCeEEEEE------cCCCCEEEEEec
Q psy3337         230 ANPLAQNKRGISYVQQWDVDSG----------RLRLAREMKESLSALAV------RDDGRFVAVGTM  280 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~~----------~~~~~~~~~~~v~~~~~------s~dg~~l~~~~~  280 (297)
                      ..        |..|..|++...          ..+..+..|-.+-.+.-      .|||+||++...
T Consensus       396 fi--------dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          396 FI--------DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             TT--------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ee--------cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            55        899999998753          56777777766555544      578999998764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.65  E-value=0.67  Score=37.39  Aligned_cols=150  Identities=15%  Similarity=0.101  Sum_probs=71.4

Q ss_pred             CCCEEEEEcCCC-----cEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeCC-------CcEEEEEcCCCce
Q psy3337         128 NGDLMVTGGTDG-----HLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKD-------GKAFVWNSKNGSL  193 (297)
Q Consensus       128 ~g~~l~s~~~d~-----~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-------~~v~lwd~~~~~~  193 (297)
                      ++..++.|+.++     .+.+||+.+.+-  +..+.........+.  -++.+++.|+.+       ..+.+||+.+.+-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            677777777653     577888876542  222221111111222  256666666542       3588899876643


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEE--EeccCCCeEEEEEcCC
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRL--AREMKESLSALAVRDD  271 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~d  271 (297)
                      ...-  ..|.....      ...+.+  ++..++..+..   .......+.+||+.+.+=..  .+.....-.+++. .+
T Consensus       186 ~~~~--~~p~~r~~------~~~~~~--~~~iyv~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~  251 (302)
T 2xn4_A          186 TYIA--EMSTRRSG------AGVGVL--NNLLYAVGGHD---GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VN  251 (302)
T ss_dssp             EEEC--CCSSCCBS------CEEEEE--TTEEEEECCBS---SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred             EECC--CCcccccc------ccEEEE--CCEEEEECCCC---CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-EC
Confidence            3221  11111000      000111  34433332210   00113479999998754222  2221111112222 26


Q ss_pred             CCEEEEEecCCC-----eEEEEEeCCce
Q psy3337         272 GRFVAVGTMFTG-----SVFVYIAFSLQ  294 (297)
Q Consensus       272 g~~l~~~~~~dg-----~i~vwd~~~~~  294 (297)
                      +++++.|+. ++     .+.+||+.+.+
T Consensus       252 ~~i~v~GG~-~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          252 GLLYVVGGD-DGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TEEEEECCB-CSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCc-CCCcccccEEEEcCCCCe
Confidence            778888876 53     48999987643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.61  E-value=0.54  Score=38.38  Aligned_cols=148  Identities=10%  Similarity=0.025  Sum_probs=79.4

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc--C--CCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG--T--DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ...|+. ++..++... +. ..  .  +..|++++++|+-..  .  ...|+..++. +.....+..+..    .+|+|+
T Consensus        87 ~~~Iy~i~~dg~~~~~-l~-~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~  155 (302)
T 3s25_A           87 RNSLCRIKRNGHGSTV-LD-PD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTS  155 (302)
T ss_dssp             SEEEEEEETTSCCCEE-EE-CS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEE
T ss_pred             CCeEEEEeCCCCcceE-ee-cC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEE
Confidence            455666 666655332 32 21  1  347888998888765  3  3445555554 333444443432    456778


Q ss_pred             CCEEEEEeC-CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         171 GEQIVSIAK-DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       171 ~~~l~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      ++.|+-.+. ...|.+.++..+.....+...     ..         ..+.|++.+|+....     +. ...|..-++.
T Consensus       156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-----~~---------~~~~P~g~~iy~t~~-----~~-~~~I~~~~ld  215 (302)
T 3s25_A          156 DRYFYYNNPKNGQLYRYDTASQSEALFYDCN-----CY---------KPVVLDDTNVYYMDV-----NR-DNAIVHVNIN  215 (302)
T ss_dssp             TTEEEEECTTTCCEEEEETTTTEEEEEECSC-----EE---------EEEEEETTEEEEEEG-----GG-TTEEEEECSS
T ss_pred             CCEEEEEeCCCceEEEEECCCCCEEEEeCCC-----cc---------ceeeecCCEEEEEEc-----CC-CcEEEEEECC
Confidence            888886655 577888887655433222210     11         123577877777654     11 2467666766


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEE
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVG  278 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  278 (297)
                      .... ..+.. ..+  ..|+|++.+|..+
T Consensus       216 G~~~-~~Lt~-~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          216 NPNP-VVLTE-ANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             SCCC-EECSC-SCE--EEEEEETTEEEEE
T ss_pred             CCCe-EEEeC-CCc--ceEEECCCEEEEE
Confidence            5432 22221 123  2366667766654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.52  E-value=0.77  Score=37.13  Aligned_cols=149  Identities=11%  Similarity=0.043  Sum_probs=73.6

Q ss_pred             cCCCEEEEEcCC----CcEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeCC------CcEEEEEcCCCcee
Q psy3337         127 RNGDLMVTGGTD----GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKD------GKAFVWNSKNGSLS  194 (297)
Q Consensus       127 ~~g~~l~s~~~d----~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------~~v~lwd~~~~~~~  194 (297)
                      .++.+++.|+.+    ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+      ..+.+||+.+.+-.
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            366777787755    5788899877642  2222211111122222  56677777654      45889998876433


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC-C----CCeEEEEeCCCCceE--EEeccCCCeEEEE
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR-G----ISYVQQWDVDSGRLR--LAREMKESLSALA  267 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~-~----d~~i~~wd~~~~~~~--~~~~~~~~v~~~~  267 (297)
                      ..-  ..|.... .     ...+.  -+++.++..+.    .+. .    ...+.+||+.+.+=.  ..+.....-.+++
T Consensus       132 ~~~--~~p~~r~-~-----~~~~~--~~~~iyv~GG~----~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  197 (306)
T 3ii7_A          132 TKP--SMLTQRC-S-----HGMVE--ANGLIYVCGGS----LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLV  197 (306)
T ss_dssp             EEC--CCSSCCB-S-----CEEEE--ETTEEEEECCE----ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             eCC--CCcCCcc-e-----eEEEE--ECCEEEEECCC----CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEE
Confidence            221  1111100 0     00011  13443333221    011 1    456899999875422  2222111112222


Q ss_pred             EcCCCCEEEEEecCC-----CeEEEEEeCCc
Q psy3337         268 VRDDGRFVAVGTMFT-----GSVFVYIAFSL  293 (297)
Q Consensus       268 ~s~dg~~l~~~~~~d-----g~i~vwd~~~~  293 (297)
                      .. ++++++.|+. +     ..+.+||+.+.
T Consensus       198 ~~-~~~i~v~GG~-~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          198 FV-KDKIFAVGGQ-NGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             EE-TTEEEEECCE-ETTEEBCCEEEEETTTT
T ss_pred             EE-CCEEEEEeCC-CCCCCCceEEEeeCCCC
Confidence            22 6677777764 4     35888888764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.40  E-value=1.2  Score=38.42  Aligned_cols=184  Identities=8%  Similarity=0.052  Sum_probs=105.2

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVS  176 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  176 (297)
                      .+.+ |+.++..+....  -.+.  +.-.+|..+.+|--. ..++.|||+++...+..+.- ...|.-..|-.+. .|+.
T Consensus        49 ~vvIiDl~~~~~~~rrp--i~Ad--sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~l  121 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRP--ISAD--SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVAL  121 (494)
T ss_dssp             EEEEEETTSTTSCEEEE--CCCS--EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEE
T ss_pred             eEEEEECCCCCcceecc--cccc--eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEE
Confidence            5555 776655443322  1111  556788888777654 67899999999888877764 3467788886543 4544


Q ss_pred             EeCCCcEEEEEcCC-CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC-----------------------
Q psy3337         177 IAKDGKAFVWNSKN-GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP-----------------------  232 (297)
Q Consensus       177 ~~~d~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----------------------  232 (297)
                      .+ +..|+-|++.. ..+.+.+..|....      .+++-....+++.++++.++..                       
T Consensus       122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~------~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i  194 (494)
T 1bpo_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI  194 (494)
T ss_dssp             EC-SSEEEEEESSSSCCCEEEEECCGGGT------TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE
T ss_pred             Ec-CCeeEEecccCCCCchhheecchhcc------cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh
Confidence            43 45799999863 34555555443111      0111112223333322222110                       


Q ss_pred             -----------------------cccccCCCCeEEEEeCCCC---------ceEEEeccC---CC-eEEEEEcCCCCEEE
Q psy3337         233 -----------------------LAQNKRGISYVQQWDVDSG---------RLRLAREMK---ES-LSALAVRDDGRFVA  276 (297)
Q Consensus       233 -----------------------~~~~g~~d~~i~~wd~~~~---------~~~~~~~~~---~~-v~~~~~s~dg~~l~  276 (297)
                                             +.......+.+++.++...         +.+..+-.+   .. ..++.+|+.-..+.
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence                                   0001222367777776431         111111111   22 67888888878888


Q ss_pred             EEecCCCeEEEEEeCCceec
Q psy3337         277 VGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .-+. -|.|++||+.|+.++
T Consensus       275 viTK-~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          275 LITK-YGYIHLYDLETGTCI  293 (494)
T ss_dssp             EEET-TSEEEEEETTTCCEE
T ss_pred             EEec-CceEEEEecccceee
Confidence            8888 999999999999865

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.40  E-value=0.39  Score=40.04  Aligned_cols=117  Identities=9%  Similarity=-0.073  Sum_probs=62.8

Q ss_pred             EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC---CeEEEEec
Q psy3337         154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK---RSRLFTLA  230 (297)
Q Consensus       154 ~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~  230 (297)
                      .+...-...+.|+|.|+|++|++--..|.|++++...+..........    ...........|+++|+   ...|+...
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~----v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG----VSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT----CCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc----eeecCCCCceeeEeccccccCCEEEEEE
Confidence            333334567899999999977776558999999876554321111110    00000011234788985   34444432


Q ss_pred             cCcccccCCCCeEEEEeCCCC----------ce-EEEeccCC--CeEEEEEcCCCCEEEEEe
Q psy3337         231 NPLAQNKRGISYVQQWDVDSG----------RL-RLAREMKE--SLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~~----------~~-~~~~~~~~--~v~~~~~s~dg~~l~~~~  279 (297)
                      .     ...+..|.-|.+..+          +. +..+....  ....|.|.|||.+.++.+
T Consensus       102 t-----~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          102 T-----SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             E-----CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             e-----cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            1     122456666665431          11 12232211  156799999998766643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.00  E-value=1.1  Score=36.01  Aligned_cols=151  Identities=15%  Similarity=0.103  Sum_probs=73.3

Q ss_pred             cCCCEEEEEcCC-----CcEEEEeCCCCe-----eeEEeccccCCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q psy3337         127 RNGDLMVTGGTD-----GHLRLWSFPKMK-----PLLHIEAHSKEIDDVDFSISGEQIVSIAKD-----GKAFVWNSKNG  191 (297)
Q Consensus       127 ~~g~~l~s~~~d-----~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----~~v~lwd~~~~  191 (297)
                      .++..++.|+.+     ..+.+||+.+.+     .+..+.........+.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            366777777755     468899987654     22222211111122222  56666666643     35888998766


Q ss_pred             ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE--eccCCCeEEEEEc
Q psy3337         192 SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA--REMKESLSALAVR  269 (297)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~--~~~~~~v~~~~~s  269 (297)
                      +-...-..+.+.. .       ...+..  +++.++..+..   .......+.+||+.+.+=...  +.....-.+++. 
T Consensus       139 ~W~~~~~~p~~r~-~-------~~~~~~--~~~iyv~GG~~---~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  204 (301)
T 2vpj_A          139 QWSMLGDMQTARE-G-------AGLVVA--SGVIYCLGGYD---GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-  204 (301)
T ss_dssp             EEEEEEECSSCCB-S-------CEEEEE--TTEEEEECCBC---SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             eEEECCCCCCCcc-c-------ceEEEE--CCEEEEECCCC---CCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-
Confidence            4332211111110 0       000111  44433332210   001135789999887543222  221111112222 


Q ss_pred             CCCCEEEEEecCC-----CeEEEEEeCCce
Q psy3337         270 DDGRFVAVGTMFT-----GSVFVYIAFSLQ  294 (297)
Q Consensus       270 ~dg~~l~~~~~~d-----g~i~vwd~~~~~  294 (297)
                      -++++++.|+. +     ..+.+||+.+.+
T Consensus       205 ~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          205 LNDHIYVVGGF-DGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ETTEEEEECCB-CSSSBCCCEEEEETTTTE
T ss_pred             ECCEEEEEeCC-CCCcccceEEEEeCCCCc
Confidence            26777777775 4     358899987653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.84  E-value=1.5  Score=36.57  Aligned_cols=62  Identities=13%  Similarity=-0.018  Sum_probs=36.6

Q ss_pred             CCcEEEEEEecC---CCEEEEEcC-C-----CcEEEEeCCCCe-----ee-EEec---cccCCeeEEEEccCCCEEEEEe
Q psy3337         117 ESLQRVVRLSRN---GDLMVTGGT-D-----GHLRLWSFPKMK-----PL-LHIE---AHSKEIDDVDFSISGEQIVSIA  178 (297)
Q Consensus       117 ~~~v~~~~~s~~---g~~l~s~~~-d-----~~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~sp~~~~l~s~~  178 (297)
                      ......++|+|+   +..|..+.. .     +.|..|+...+.     .+ ..+.   ........++|.|+|.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            345789999998   545544332 2     567778776431     11 1233   1112346899999997666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.79  E-value=1.4  Score=35.97  Aligned_cols=140  Identities=9%  Similarity=0.001  Sum_probs=80.2

Q ss_pred             EEEEecCCCEEEEEcCC--------------CcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe--CC--CcE
Q psy3337         122 VVRLSRNGDLMVTGGTD--------------GHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA--KD--GKA  183 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~d--~~v  183 (297)
                      +--++++|.+|+.+...              ..|+..++...+.. .+..  ..  +..|++++..|+-..  .+  ..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34568899988876543              35666676655432 2221  11  236788888888765  33  445


Q ss_pred             EEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCe
Q psy3337         184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESL  263 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v  263 (297)
                      +..++. |.....+..+.    .          .+++|+++.|+....       ....|.+.++..+.....+.+  ..
T Consensus       132 y~~~~d-Gs~~~~lt~~~----~----------~~~~~~g~~iy~t~~-------g~~~Iy~~~l~g~~~~~l~~~--~~  187 (302)
T 3s25_A          132 YRIRID-GEEKKKIKNHY----L----------FTCNTSDRYFYYNNP-------KNGQLYRYDTASQSEALFYDC--NC  187 (302)
T ss_dssp             EEEETT-SCCCEEEESSC----C----------CCSEEETTEEEEECT-------TTCCEEEEETTTTEEEEEECS--CE
T ss_pred             EEEECC-CCCeEEEeCCC----c----------eEeeEECCEEEEEeC-------CCceEEEEECCCCCEEEEeCC--Cc
Confidence            555654 33333333221    0          235777888887542       357899999886654444432  22


Q ss_pred             EEEEEcCCCCEEEEEecCCC--eEEEEEeCC
Q psy3337         264 SALAVRDDGRFVAVGTMFTG--SVFVYIAFS  292 (297)
Q Consensus       264 ~~~~~s~dg~~l~~~~~~dg--~i~vwd~~~  292 (297)
                      . ..++|++.+|+.... ++  .|..-++..
T Consensus       188 ~-~~~~P~g~~iy~t~~-~~~~~I~~~~ldG  216 (302)
T 3s25_A          188 Y-KPVVLDDTNVYYMDV-NRDNAIVHVNINN  216 (302)
T ss_dssp             E-EEEEEETTEEEEEEG-GGTTEEEEECSSS
T ss_pred             c-ceeeecCCEEEEEEc-CCCcEEEEEECCC
Confidence            2 235699998887765 43  455555543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.73  E-value=1.3  Score=35.65  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCC------CcEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeC---------CCcEEEEEcCC
Q psy3337         128 NGDLMVTGGTD------GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAK---------DGKAFVWNSKN  190 (297)
Q Consensus       128 ~g~~l~s~~~d------~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~---------d~~v~lwd~~~  190 (297)
                      ++++++.|+.+      ..+.+||+.+.+-  +..+.........+.  -++.+++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            67777787765      4688999877642  212221111111222  25666666653         34588999877


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce--EEEeccCCC-eEEEE
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL--RLAREMKES-LSALA  267 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~-v~~~~  267 (297)
                      .+-... . ..|.... .     ...+..  +++.++..+..   ....-..+.+||+.+.+=  +..+..... ...+.
T Consensus       179 ~~W~~~-~-~~p~~r~-~-----~~~~~~--~~~i~v~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          179 ETWTEL-C-PMIEARK-N-----HGLVFV--KDKIFAVGGQN---GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             TEEEEE-C-CCSSCCB-S-----CEEEEE--TTEEEEECCEE---TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             CeEEEC-C-Cccchhh-c-----ceEEEE--CCEEEEEeCCC---CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            643222 1 1111100 0     001111  34433332110   000124689999987532  222222111 22333


Q ss_pred             EcCCCCEEEEEecCC-----CeEEEEEeCCce
Q psy3337         268 VRDDGRFVAVGTMFT-----GSVFVYIAFSLQ  294 (297)
Q Consensus       268 ~s~dg~~l~~~~~~d-----g~i~vwd~~~~~  294 (297)
                      +  ++++++.|+. +     ..+.+||+.+.+
T Consensus       246 ~--~~~i~v~GG~-~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          246 V--GSIVYVLAGF-QGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             E--TTEEEEEECB-CSSSBCCEEEEEETTTTE
T ss_pred             E--CCEEEEEeCc-CCCeeeeeEEEEcCCCCe
Confidence            3  6778888874 4     568899987643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.59  E-value=1.2  Score=44.27  Aligned_cols=73  Identities=5%  Similarity=0.170  Sum_probs=47.4

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC-Cceeeeee
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN-GSLSKELK  198 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~-~~~~~~~~  198 (297)
                      +.-.+|..+.+|--. ..++.|||+++...+..+.- ...|.-..|-.+. .|+..+ +..|+-|++.. ..+...+.
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHh
Confidence            445678777776654 67899999988777666653 3467788886543 344332 35799999963 23433343

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.31  E-value=0.29  Score=40.69  Aligned_cols=109  Identities=12%  Similarity=0.175  Sum_probs=66.8

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeecc--CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCC
Q psy3337         172 EQIVSIAKDGKAFVWNSKNGSLSKELKWN--TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~  249 (297)
                      .+++.++.||.|+-+|..+|+.+-.+...  .|.    .....    -....++..++..       ...||.|+.++..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~----~~~~~----~~~~~~~~~~vv~-------p~~dG~l~a~~~~   75 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPL----IEIQE----PSRLETYETLIIE-------PFGDGNIYYFNAH   75 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCS----EECCC----SCTTTSSEEEEEC-------CSTTTEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCc----EEecC----CccccCCcEEEEE-------ECCCCEEEEEECC
Confidence            36888999999999999999988887654  111    11000    0001122322221       1358999999998


Q ss_pred             CCceEEEeccCCCe--EEEEEc-----------CCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         250 SGRLRLAREMKESL--SALAVR-----------DDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       250 ~~~~~~~~~~~~~v--~~~~~s-----------~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +|.....+....-+  .-+...           ..+..+++|+. +|.+...|+.+|+.+
T Consensus        76 ~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-~g~l~ald~~tG~~~  134 (339)
T 2be1_A           76 QGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM-RTIMYTINMLNGEII  134 (339)
T ss_dssp             TEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEE-EEEEEEEETTTCCEE
T ss_pred             CCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEec-CCEEEEEECCCCcEE
Confidence            87555443322111  001111           14567888998 999999999999875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.24  E-value=1.8  Score=35.02  Aligned_cols=150  Identities=11%  Similarity=0.103  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCC-----CcEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceee
Q psy3337         128 NGDLMVTGGTD-----GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKD-----GKAFVWNSKNGSLSK  195 (297)
Q Consensus       128 ~g~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----~~v~lwd~~~~~~~~  195 (297)
                      ++++++.|+.+     ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            66777777643     3688899876542  2122211111122222  56666776654     458889987654322


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE--eccCCCeEEEEEcCCCC
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA--REMKESLSALAVRDDGR  273 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~dg~  273 (297)
                      . . ..|.. ...     ...+.+  ++..++..+..   .......+.+||+.+.+=...  +.....-.+++. -+++
T Consensus       199 ~-~-~~p~~-r~~-----~~~~~~--~~~iyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~  264 (308)
T 1zgk_A          199 I-T-AMNTI-RSG-----AGVCVL--HNCIYAAGGYD---GQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGR  264 (308)
T ss_dssp             C-C-CCSSC-CBS-----CEEEEE--TTEEEEECCBC---SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE
T ss_pred             C-C-CCCCc-ccc-----ceEEEE--CCEEEEEeCCC---CCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCE
Confidence            1 1 11111 000     001112  34433332210   001135799999987542222  221111122222 2677


Q ss_pred             EEEEEecCC-----CeEEEEEeCCce
Q psy3337         274 FVAVGTMFT-----GSVFVYIAFSLQ  294 (297)
Q Consensus       274 ~l~~~~~~d-----g~i~vwd~~~~~  294 (297)
                      +++.|+. +     ..+.+||+.+.+
T Consensus       265 i~v~GG~-~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          265 IYVLGGY-DGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEECCB-CSSCBCCEEEEEETTTTE
T ss_pred             EEEEcCc-CCCcccceEEEEcCCCCE
Confidence            8888775 4     457889887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.61  E-value=3.3  Score=35.87  Aligned_cols=115  Identities=8%  Similarity=0.046  Sum_probs=59.9

Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC----CCCceEEEEeeeeeeeeeCCC---CeEEEEecc
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT----PDNIKYLFKRCRYGLVEDSPK---RSRLFTLAN  231 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~  231 (297)
                      -...+.|+|.|+|+++++-...+.|++++..++..........    +.+      ......|+++|+   +..|+....
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g------~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADG------QNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTS------SCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCC------CCceeEEEECCCcCcCCEEEEEEe
Confidence            3456799999999977765444578888765554322111111    000      011224788996   555655442


Q ss_pred             CcccccCC-----CCeEEEEeCCCC-------ceE-EEeccC--CCeEEEEEcCCCCEEEEEe
Q psy3337         232 PLAQNKRG-----ISYVQQWDVDSG-------RLR-LAREMK--ESLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       232 ~~~~~g~~-----d~~i~~wd~~~~-------~~~-~~~~~~--~~v~~~~~s~dg~~l~~~~  279 (297)
                      .....+..     ...|..|++..+       +.+ ..+...  .....|+|.|||.+.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            00000000     235666665321       111 122221  1278999999998766644

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.06  E-value=2.9  Score=33.71  Aligned_cols=150  Identities=13%  Similarity=0.027  Sum_probs=71.6

Q ss_pred             CCCEEEEEcC----C-----CcEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q psy3337         128 NGDLMVTGGT----D-----GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKD-----GKAFVWNSKNG  191 (297)
Q Consensus       128 ~g~~l~s~~~----d-----~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----~~v~lwd~~~~  191 (297)
                      ++.+++.|+.    +     ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            6677777775    2     4688899876542  2222211111122222  56666666543     35888898765


Q ss_pred             ceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE--eccCCCeEEEEEc
Q psy3337         192 SLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA--REMKESLSALAVR  269 (297)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~--~~~~~~v~~~~~s  269 (297)
                      +-...-..+.+.. .       ...+.+  ++..++..+..   .......+.+||+.+.+=...  +.....-.+++..
T Consensus       148 ~W~~~~~~p~~r~-~-------~~~~~~--~~~iyv~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  214 (308)
T 1zgk_A          148 EWHLVAPMLTRRI-G-------VGVAVL--NRLLYAVGGFD---GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL  214 (308)
T ss_dssp             EEEECCCCSSCCB-S-------CEEEEE--TTEEEEECCBC---SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             eEeECCCCCcccc-c-------eEEEEE--CCEEEEEeCCC---CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE
Confidence            4322211111110 0       001112  34433332210   000135689999887542221  2111111222222


Q ss_pred             CCCCEEEEEecCC-----CeEEEEEeCCce
Q psy3337         270 DDGRFVAVGTMFT-----GSVFVYIAFSLQ  294 (297)
Q Consensus       270 ~dg~~l~~~~~~d-----g~i~vwd~~~~~  294 (297)
                       ++++++.|+. +     ..+.+||+.+.+
T Consensus       215 -~~~iyv~GG~-~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          215 -HNCIYAAGGY-DGQDQLNSVERYDVETET  242 (308)
T ss_dssp             -TTEEEEECCB-CSSSBCCCEEEEETTTTE
T ss_pred             -CCEEEEEeCC-CCCCccceEEEEeCCCCc
Confidence             6777787775 4     458899987643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.03  E-value=4  Score=35.18  Aligned_cols=159  Identities=12%  Similarity=0.166  Sum_probs=94.2

Q ss_pred             CcEEEEEEecCCCEEEEEc-------CCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC---CCEEEEEeCC---CcEE
Q psy3337         118 SLQRVVRLSRNGDLMVTGG-------TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS---GEQIVSIAKD---GKAF  184 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~s~~~d---~~v~  184 (297)
                      ..|..-..+++.++++..+       ..|.+.+|..+.+ .-+.+.+|......+.+..+   ..+|+.+...   +.++
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh  229 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence            4466667788888877443       2467889987654 34677788766555544322   1244444443   7888


Q ss_pred             EEEcCCC---ce-----eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE
Q psy3337         185 VWNSKNG---SL-----SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA  256 (297)
Q Consensus       185 lwd~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~  256 (297)
                      +.++...   ..     ...+..+......+.+      .+..++.-..++.+..        -|.|++||+.++.++..
T Consensus       230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv------amqvs~kygviyviTK--------~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV------AMQISEKHDVVFLITK--------YGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE------EEEEETTTTEEEEEET--------TSEEEEEETTTCCEEEE
T ss_pred             EEEcCCCccCCCCccceeeeeeCCcccccCcee------EEEecccCCEEEEEec--------CceEEEEecccceeeee
Confidence            8888432   11     1111111111112222      2556777777777665        89999999999999887


Q ss_pred             eccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         257 REMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       257 ~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      -+-... |...+-..+..-++.... .|.|.--.+..
T Consensus       296 nrIs~~~iF~t~~~~~~~Gi~~Vnr-~GqVl~v~v~e  331 (494)
T 1bpo_A          296 NRISGETIFVTAPHEATAGIIGVNR-KGQVLSVCVEE  331 (494)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEET-TCEEEEEEECT
T ss_pred             ecccCCceEEecccCCCCcEEEEcc-CceEEEEEEcc
Confidence            665444 655555554444555556 78777666544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.73  E-value=3.2  Score=33.29  Aligned_cols=149  Identities=15%  Similarity=0.102  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceee
Q psy3337         128 NGDLMVTGGTD-----GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKDG-----KAFVWNSKNGSLSK  195 (297)
Q Consensus       128 ~g~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~-----~v~lwd~~~~~~~~  195 (297)
                      ++..++.|+.+     ..+.+||..+.+-  +..+.........+.+  ++.+++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            66777777754     3588899876542  2222211111122222  566777776553     47788887654332


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC---CCCeEEEEeCCCCceEE--EeccCCCeEEEEEcC
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR---GISYVQQWDVDSGRLRL--AREMKESLSALAVRD  270 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~---~d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~  270 (297)
                      .-.  .|..... .     ..+.  -+++.++..+.    .+.   ....+.+||+.+.+=..  .+.....-.+++. -
T Consensus       139 ~~~--~p~~r~~-~-----~~~~--~~~~iyv~GG~----~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~  203 (302)
T 2xn4_A          139 VAP--MNTRRSS-V-----GVGV--VGGLLYAVGGY----DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-L  203 (302)
T ss_dssp             ECC--CSSCCBS-C-----EEEE--ETTEEEEECCE----ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E
T ss_pred             cCC--CCCcccC-c-----eEEE--ECCEEEEEeCC----CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-E
Confidence            211  1111000 0     0011  13443333221    011   13468999998754222  2222111122222 2


Q ss_pred             CCCEEEEEecCCC-----eEEEEEeCCce
Q psy3337         271 DGRFVAVGTMFTG-----SVFVYIAFSLQ  294 (297)
Q Consensus       271 dg~~l~~~~~~dg-----~i~vwd~~~~~  294 (297)
                      ++++++.|+. ++     .+.+||+.+.+
T Consensus       204 ~~~iyv~GG~-~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          204 NNLLYAVGGH-DGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TTEEEEECCB-SSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEECCC-CCCcccceEEEEeCCCCC
Confidence            6777788775 53     68899987643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.53  E-value=3.5  Score=33.31  Aligned_cols=63  Identities=17%  Similarity=0.066  Sum_probs=35.2

Q ss_pred             CCCEEEEEcCC--------CcEEEEeCCCCe--eeEEeccccCCeeEEEEccCCCEEEEEeC-C-----CcEEEEEcCCC
Q psy3337         128 NGDLMVTGGTD--------GHLRLWSFPKMK--PLLHIEAHSKEIDDVDFSISGEQIVSIAK-D-----GKAFVWNSKNG  191 (297)
Q Consensus       128 ~g~~l~s~~~d--------~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-d-----~~v~lwd~~~~  191 (297)
                      ++..++.|+.+        ..+.+||+.+.+  .+..+....... ++. .-++.+++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEE-EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56677777642        458899987654  222222111111 122 235667777765 2     46889998766


Q ss_pred             c
Q psy3337         192 S  192 (297)
Q Consensus       192 ~  192 (297)
                      +
T Consensus       176 ~  176 (315)
T 4asc_A          176 E  176 (315)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.98  E-value=2.4  Score=35.29  Aligned_cols=115  Identities=12%  Similarity=0.100  Sum_probs=56.3

Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC---CeEEEEeccCcccc
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK---RSRLFTLANPLAQN  236 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~~~~~~  236 (297)
                      .....|+|.|+|+.|+.+...+.|++++. .+.....+... +.  ...........++++|+   +..|+......-..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~-~~--v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGV-PD--VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSC-CC--CCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCC-cc--cccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            35689999999983444557799999985 34322111110 00  00000011234788996   55555543200000


Q ss_pred             cCCCCeEEEEeCCCC--c---e--E-EEecc----CCCeEEEEEcCCCCEEEEE
Q psy3337         237 KRGISYVQQWDVDSG--R---L--R-LAREM----KESLSALAVRDDGRFVAVG  278 (297)
Q Consensus       237 g~~d~~i~~wd~~~~--~---~--~-~~~~~----~~~v~~~~~s~dg~~l~~~  278 (297)
                      +.....|..|++...  .   .  + ..+..    +.....++|.|||.+.++.
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            000235666766432  1   1  1 11211    1114679999999655543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.94  E-value=4.2  Score=32.86  Aligned_cols=180  Identities=12%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC----C-------CcEEEEeCCCCee--eEEeccccCCee
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT----D-------GHLRLWSFPKMKP--LLHIEAHSKEID  163 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----d-------~~i~iwd~~~~~~--~~~~~~~~~~v~  163 (297)
                      .+.. |+.+++....-...............++..++.|+.    +       ..+.+||..+.+-  +..+........
T Consensus        14 ~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~   93 (315)
T 4asc_A           14 GAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG   93 (315)
T ss_dssp             EEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE
T ss_pred             ceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee
Confidence            4555 777766443111122233334444557788888873    1       1277888876542  112211111111


Q ss_pred             EEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccc
Q psy3337         164 DVDFSISGEQIVSIAKD--------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ  235 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~d--------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~  235 (297)
                      .+.+  ++.+++.|+.+        ..+.+||+.+.+-...-.  .|.. .       ....+..-+++ |+..+.. ..
T Consensus        94 ~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~-r-------~~~~~~~~~~~-iyv~GG~-~~  159 (315)
T 4asc_A           94 LGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV-V-------YGHTVLSHMDL-VYVIGGK-GS  159 (315)
T ss_dssp             EEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC-C-------BSCEEEEETTE-EEEECCB-CT
T ss_pred             EEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc-c-------cceeEEEECCE-EEEEeCC-CC
Confidence            1222  55666666632        458889987764322111  1111 0       00000112344 3333210 00


Q ss_pred             ccCCCCeEEEEeCCCCceEE--EeccCCCeEEEEEcCCCCEEEEEecCCC-----eEEEEEeCCc
Q psy3337         236 NKRGISYVQQWDVDSGRLRL--AREMKESLSALAVRDDGRFVAVGTMFTG-----SVFVYIAFSL  293 (297)
Q Consensus       236 ~g~~d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~dg~~l~~~~~~dg-----~i~vwd~~~~  293 (297)
                      .+..-..+.+||+.+.+=..  .+.....-.+++. -++++++.|+. ++     .+.+||+.+.
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~-~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGV-TDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEE-CSSSEEEEEEEEETTTT
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEecc-CCCCccceEEEEECCCC
Confidence            01113578999998753222  2221111122222 26777777776 54     5888888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.69  E-value=5.7  Score=32.08  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=34.8

Q ss_pred             CCCEEEEEcCC-------CcEEEEeCCCCeee--EEeccccCCeeEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q psy3337         128 NGDLMVTGGTD-------GHLRLWSFPKMKPL--LHIEAHSKEIDDVDFSISGEQIVSIAK------DGKAFVWNSKNGS  192 (297)
Q Consensus       128 ~g~~l~s~~~d-------~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~~~------d~~v~lwd~~~~~  192 (297)
                      ++..++.|+.+       ..+.+||+.+.+-.  ..+....... ++.. .++.+++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            66777777754       35788888765422  1221111111 1222 35666666653      2358899988764


Q ss_pred             e
Q psy3337         193 L  193 (297)
Q Consensus       193 ~  193 (297)
                      -
T Consensus       187 W  187 (318)
T 2woz_A          187 W  187 (318)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.39  E-value=1.5  Score=39.05  Aligned_cols=69  Identities=14%  Similarity=0.188  Sum_probs=48.9

Q ss_pred             EEEEEecCCCEEEEE-cCCCcEEEEeCCCC------ee-------eEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEE
Q psy3337         121 RVVRLSRNGDLMVTG-GTDGHLRLWSFPKM------KP-------LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       121 ~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~------~~-------~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lw  186 (297)
                      ..+.++|||++++.+ ..+.++.++|++..      +.       +.... -.......+|.++|.-..+---|..|.-|
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence            478899999887654 56889999998632      11       12222 23456788999999545555679999999


Q ss_pred             EcCC
Q psy3337         187 NSKN  190 (297)
Q Consensus       187 d~~~  190 (297)
                      ++..
T Consensus       405 ni~~  408 (638)
T 3sbq_A          405 NMEE  408 (638)
T ss_dssp             EHHH
T ss_pred             eccH
Confidence            9864

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=89.73  E-value=7.5  Score=31.94  Aligned_cols=53  Identities=6%  Similarity=-0.003  Sum_probs=28.5

Q ss_pred             eEEEEeCCCC--ceEEEeccCCCeEEEEEcCCCCEEEEEecCCC------eEEEEEeCCceec
Q psy3337         242 YVQQWDVDSG--RLRLAREMKESLSALAVRDDGRFVAVGTMFTG------SVFVYIAFSLQMC  296 (297)
Q Consensus       242 ~i~~wd~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg------~i~vwd~~~~~~~  296 (297)
                      .+.+||+.+.  +.+..+.....- ..++..++++++.|+. ++      .|.++++.+.+.+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~-~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAY-GVSLPWNNSLLIIGGE-TAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBS-SEEEEETTEEEEEEEE-CGGGCEEEEEEEEEC-CCSCE
T ss_pred             eEEEEecCCCceeeCCCCCCCccc-ceeEEeCCEEEEEeee-CCCCCEeeeEEEEEEcCcEeE
Confidence            5788998863  344443332221 1223347788888885 43      3666688776643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.72  E-value=11  Score=32.63  Aligned_cols=51  Identities=14%  Similarity=0.200  Sum_probs=33.4

Q ss_pred             EEEEEEecCCC-EEEEEcCCCcEEEEeCCCC---eeeEEec---------cccCCeeEEEEccC
Q psy3337         120 QRVVRLSRNGD-LMVTGGTDGHLRLWSFPKM---KPLLHIE---------AHSKEIDDVDFSIS  170 (297)
Q Consensus       120 v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~sp~  170 (297)
                      -+.++|.|+|. .|+.+...|.|++++....   ..+..+.         ........|+|+|+
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            46899999995 4555567899999975322   1222221         11356789999996

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.11  E-value=7.7  Score=30.03  Aligned_cols=101  Identities=9%  Similarity=-0.024  Sum_probs=60.6

Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEE---EeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLF---KRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      ..+..++|+|++.+.++  .+|.++-.+..+.....-+.. .     ..+   .-..|..+.|.|+|.+.++  .     
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~-----t~IG~~Gw~~F~a~~fD~~G~LYav--~-----  105 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-A-----KKIGNGGWNQFQFLFFDPNGYLYAV--S-----  105 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-C-----EEEECSCGGGCSEEEECTTSCEEEE--E-----
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-c-----cEecccccccceEEEECCCCCEEEe--C-----
Confidence            36789999999986666  667766666544222111100 0     000   0012456888999976655  3     


Q ss_pred             cCCCCeEEEEeCCCCceE------EEeccC--CCeEEEEEcCCCCEEEEE
Q psy3337         237 KRGISYVQQWDVDSGRLR------LAREMK--ESLSALAVRDDGRFVAVG  278 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~------~~~~~~--~~v~~~~~s~dg~~l~~~  278 (297)
                         |+.|+-++..+...-      ..+-..  ..+..|.|.|+|.+-++.
T Consensus       106 ---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          106 ---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             ---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             ---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence               799999987542111      111111  238999999999888777

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.79  E-value=9  Score=33.23  Aligned_cols=30  Identities=13%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             CCeeEEEEccCCC-EEEEEeCCCcEEEEEcC
Q psy3337         160 KEIDDVDFSISGE-QIVSIAKDGKAFVWNSK  189 (297)
Q Consensus       160 ~~v~~~~~sp~~~-~l~s~~~d~~v~lwd~~  189 (297)
                      ...+.|+|.|++. .|+++...|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            4567999999986 45555788999999753

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=87.50  E-value=11  Score=31.20  Aligned_cols=61  Identities=10%  Similarity=-0.014  Sum_probs=35.4

Q ss_pred             CcEEEEEEecC---CCEEEEEcC----C----CcEEEEeCCCC-------eee-EEecc-ccCCeeEEEEccCCCEEEEE
Q psy3337         118 SLQRVVRLSRN---GDLMVTGGT----D----GHLRLWSFPKM-------KPL-LHIEA-HSKEIDDVDFSISGEQIVSI  177 (297)
Q Consensus       118 ~~v~~~~~s~~---g~~l~s~~~----d----~~i~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~sp~~~~l~s~  177 (297)
                      .....++|+|+   +..|..+..    +    +.|..|+....       +.+ ..+.. .......|+|.|||.++++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45789999997   444444332    3    56777776543       111 11221 11234679999999876664


Q ss_pred             e
Q psy3337         178 A  178 (297)
Q Consensus       178 ~  178 (297)
                      +
T Consensus       153 G  153 (354)
T 3a9g_A          153 G  153 (354)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=86.26  E-value=3.8  Score=36.49  Aligned_cols=65  Identities=11%  Similarity=-0.007  Sum_probs=43.4

Q ss_pred             eeeeeCCCCeEEEEeccCc----ccccCCCCeEEEEeCCCCceEEEeccCC--CeEEEEEcCCCCEEEEEe
Q psy3337         215 GLVEDSPKRSRLFTLANPL----AQNKRGISYVQQWDVDSGRLRLAREMKE--SLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       215 ~~~~~s~~~~~l~~~~~~~----~~~g~~d~~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~  279 (297)
                      ..|.|.++|.+.+......    ...+.....+..++..++++...+....  .++.++|+||++.|.+.-
T Consensus       479 DnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            3588899998766332210    0011123367888888888877776542  399999999999988765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.60  E-value=13  Score=29.97  Aligned_cols=179  Identities=14%  Similarity=0.081  Sum_probs=81.4

Q ss_pred             EEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcC----CC-------cEEEEeCCCCeee--EEeccccCCeeE
Q psy3337          99 LRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT----DG-------HLRLWSFPKMKPL--LHIEAHSKEIDD  164 (297)
Q Consensus        99 i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----d~-------~i~iwd~~~~~~~--~~~~~~~~~v~~  164 (297)
                      +.. |+.+.+....-...............++..++.|+.    ++       .+.+||..+.+-.  ..+.........
T Consensus        26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  105 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL  105 (318)
T ss_dssp             EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEE
T ss_pred             eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccce
Confidence            444 777666444211121222233344557788888873    12       1778887765422  122211111112


Q ss_pred             EEEccCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc
Q psy3337         165 VDFSISGEQIVSIAKD-------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK  237 (297)
Q Consensus       165 ~~~sp~~~~l~s~~~d-------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g  237 (297)
                      +.+  ++.+++.|+.+       ..+.+||+.+.+-...-  ..|.. ...     . .++ ..+++.++..+..  ..+
T Consensus       106 ~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~-r~~-----~-~~~-~~~~~iyv~GG~~--~~~  171 (318)
T 2woz_A          106 GEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK--NLPIK-VYG-----H-NVI-SHNGMIYCLGGKT--DDK  171 (318)
T ss_dssp             EEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC--CCSSC-EES-----C-EEE-EETTEEEEECCEE--SSS
T ss_pred             EEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC--CCCCc-ccc-----c-EEE-EECCEEEEEcCCC--CCC
Confidence            222  56677777653       34778888765433221  11111 000     0 011 1244433332110  000


Q ss_pred             CCCCeEEEEeCCCCce--EEEeccCCCeEEEEEcCCCCEEEEEecCC-----CeEEEEEeCCc
Q psy3337         238 RGISYVQQWDVDSGRL--RLAREMKESLSALAVRDDGRFVAVGTMFT-----GSVFVYIAFSL  293 (297)
Q Consensus       238 ~~d~~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~~~d-----g~i~vwd~~~~  293 (297)
                      .....+.+||+.+.+=  +..+.....-.+++. -+++.++.|+. +     ..+.+||+.+.
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~-~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGV-TEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEE-ETTEEEEEEEEEETTTC
T ss_pred             CccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCc-CCCCccceEEEEECCCC
Confidence            1134699999987542  222221111122222 26677777764 3     35778887664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=83.77  E-value=23  Score=35.61  Aligned_cols=157  Identities=13%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             CcEEEEEEecCCCEEEEEc-------CCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc---CCCEEEEEeC---CCcEE
Q psy3337         118 SLQRVVRLSRNGDLMVTGG-------TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI---SGEQIVSIAK---DGKAF  184 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~s~~~---d~~v~  184 (297)
                      ..|..-..+++.++++..|       ..|.+.+|..+.+ ..+.+.+|......+....   ...+|+.+..   .+.++
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh  229 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence            3455666778888877433       4578888887643 3345667766554444421   1223333322   36888


Q ss_pred             EEEcCCC---ceeee---eeccC-CCC-ceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE
Q psy3337         185 VWNSKNG---SLSKE---LKWNT-PDN-IKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA  256 (297)
Q Consensus       185 lwd~~~~---~~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~  256 (297)
                      |.++...   .....   ....- |+. ..+.+      .+..++.-..++.++.        -|.|++||+.++.++..
T Consensus       230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv------~~~vs~k~g~iy~itk--------~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV------AMQISEKHDVVFLITK--------YGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEecCCCccCCCCCccccccccCCcccccCcce------EEEeccccCEEEEEec--------CceEEEEecccchhhhh
Confidence            8887432   11110   00000 110 01111      2455666666766555        89999999999988765


Q ss_pred             eccCCC-eEEEEEcC-CCCEEEEEecCCCeEEEEEeC
Q psy3337         257 REMKES-LSALAVRD-DGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       257 ~~~~~~-v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      -+-... |...+-+. .+..+.+. . .|.|.--.+.
T Consensus       296 ~ris~~~iF~~~~~~~~~g~~~vn-r-~G~vl~v~v~  330 (1630)
T 1xi4_A          296 NRISGETIFVTAPHEATAGIIGVN-R-KGQVLSVCVE  330 (1630)
T ss_pred             ccccCCceEEeccCCCCCceEEEc-C-CceEEEEEEc
Confidence            544333 44334333 34344333 4 6666554443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.63  E-value=4.7  Score=38.59  Aligned_cols=39  Identities=15%  Similarity=0.090  Sum_probs=33.5

Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      .+.+++..++..++++-+.|+++++|++.+++++.+...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            466777778888999999999999999999999887653

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=82.90  E-value=7.2  Score=35.01  Aligned_cols=64  Identities=11%  Similarity=-0.018  Sum_probs=43.3

Q ss_pred             eeeeCCCCeEEEEeccC----cccccCCCCeEEEEeCCCCceEEEeccCCC--eEEEEEcCCCCEEEEEe
Q psy3337         216 LVEDSPKRSRLFTLANP----LAQNKRGISYVQQWDVDSGRLRLAREMKES--LSALAVRDDGRFVAVGT  279 (297)
Q Consensus       216 ~~~~s~~~~~l~~~~~~----~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~  279 (297)
                      .|+|+|.|.+++.-...    ....+-....+.+.+..++++.+.+..+..  ++.++|+||++.|++.-
T Consensus       480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            48899999865554320    000111234577778888888887777643  99999999999987753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=82.45  E-value=19  Score=29.46  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=27.9

Q ss_pred             CCCEEEEEcC-C---------CcEEEEeCCCCee--eEEeccccCCeeEEEEccCCCEEEEEeCC
Q psy3337         128 NGDLMVTGGT-D---------GHLRLWSFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKD  180 (297)
Q Consensus       128 ~g~~l~s~~~-d---------~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  180 (297)
                      ++.+++.|+. +         ..+.+||+.+.+=  +..+.. .......+...++.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCS-SCCSSEEEEEETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCC-cccccceEEEECCEEEEEeCcC
Confidence            6677777776 2         4688999876542  222220 1111111122467777888754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.74  E-value=31  Score=31.54  Aligned_cols=159  Identities=11%  Similarity=0.066  Sum_probs=77.2

Q ss_pred             CCCEEEEEcCC------CcEEEEeCCCCe--eeEEeccccCCeeEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeee
Q psy3337         128 NGDLMVTGGTD------GHLRLWSFPKMK--PLLHIEAHSKEIDDVDFSISGEQIVSIAKDG--KAFVWNSKNGSLSKEL  197 (297)
Q Consensus       128 ~g~~l~s~~~d------~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~--~v~lwd~~~~~~~~~~  197 (297)
                      ++..++.||.+      ..+.+||+.+.+  .+..+..... -.++....++.+++.|+.++  .+.+||+.+..-...-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            77777887754      357888987643  2222221111 12233324778888887654  6899998876432211


Q ss_pred             e-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCccccc-CCCCeEEEEeCCCCce-----EEEec---cCCC-eEEE
Q psy3337         198 K-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK-RGISYVQQWDVDSGRL-----RLARE---MKES-LSAL  266 (297)
Q Consensus       198 ~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g-~~d~~i~~wd~~~~~~-----~~~~~---~~~~-v~~~  266 (297)
                      . +..|.. ..     ....+.+..+...|+..+.. ...+ .....+.+||+.+.+-     ...+.   .... -.++
T Consensus       530 ~~g~~p~~-r~-----~~~a~v~~~~~~~iyv~GG~-~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~  602 (695)
T 2zwa_A          530 PKDEFFQN-SL-----VSAGLEFDPVSKQGIILGGG-FMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI  602 (695)
T ss_dssp             CSSGGGGS-CC-----BSCEEEEETTTTEEEEECCB-CTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred             CCCCCCCc-cc-----ceeEEEEeCCCCEEEEECCc-CCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence            1 001110 00     00112334442334433320 0000 1135789999987651     11221   1111 2233


Q ss_pred             EEcCCCCEEEEEecC-------CCeEEEEEeCCce
Q psy3337         267 AVRDDGRFVAVGTMF-------TGSVFVYIAFSLQ  294 (297)
Q Consensus       267 ~~s~dg~~l~~~~~~-------dg~i~vwd~~~~~  294 (297)
                      +...++++++.|+..       ...+.+||+.+.+
T Consensus       603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            333347788887740       2458899987653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=81.38  E-value=43  Score=32.86  Aligned_cols=173  Identities=11%  Similarity=0.073  Sum_probs=96.8

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEe---cC-CCEEEEEc----------CCCcEEEEeCCCCeeeEEe-cccc
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLS---RN-GDLMVTGG----------TDGHLRLWSFPKMKPLLHI-EAHS  159 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s---~~-g~~l~s~~----------~d~~i~iwd~~~~~~~~~~-~~~~  159 (297)
                      -..+++ |..+.+.+..+.-.....+.+++.-   .+ ..+|+.|.          ..|.|.+|++..++..... ....
T Consensus       806 ~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~  885 (1158)
T 3ei3_A          806 VHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVK  885 (1158)
T ss_dssp             EEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEES
T ss_pred             eEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcC
Confidence            356888 9888888777663444555666532   22 36788775          3478999998644322111 1235


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeecc-CCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWN-TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       160 ~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      +.|++++-. +| +|+++ ...+|++|++...+.+. .... -+.          +..+.....+.+++.        |.
T Consensus       886 g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~-~~~~~~~~----------i~~~~l~~~~~~I~v--------gD  943 (1158)
T 3ei3_A          886 GAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR-TECNHYNN----------IMALYLKTKGDFILV--------GD  943 (1158)
T ss_dssp             SCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE-EEEEECCC----------SCEEEEEEETTEEEE--------EE
T ss_pred             CcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE-EEeecccc----------EEEEEEeccCCEEEE--------EE
Confidence            678888744 45 44444 34789999997655433 1110 000          000111122444554        33


Q ss_pred             CCCeEEE--EeCCCCceEEEecc--CCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         239 GISYVQQ--WDVDSGRLRLAREM--KESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       239 ~d~~i~~--wd~~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .-..+.+  |+....+....-..  ...++++.+-.+ ..++.+.. +|.+.++....
T Consensus       944 ~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~-~gNl~vl~~~~  999 (1158)
T 3ei3_A          944 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAEN-AFNLFVCQKDS  999 (1158)
T ss_dssp             SSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEET-TSEEEEEEECT
T ss_pred             hhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcC-CCcEEEEecCC
Confidence            3455555  44444443333222  223888888655 46677888 99999987654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=80.96  E-value=44  Score=32.75  Aligned_cols=74  Identities=12%  Similarity=-0.041  Sum_probs=47.9

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeee--EEeccccCCeeEEEEccC------CCEEEEEeC-CCcEEEEEcC
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL--LHIEAHSKEIDDVDFSIS------GEQIVSIAK-DGKAFVWNSK  189 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~------~~~l~s~~~-d~~v~lwd~~  189 (297)
                      .|...+.+  +.+++.+. ++.+.++.+..++..  ... .-...|.|+++.|.      +.+++.|.. |++++|+++.
T Consensus       515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            34444443  23555554 567777777655322  121 12457999999863      468999997 9999999998


Q ss_pred             CCceeee
Q psy3337         190 NGSLSKE  196 (297)
Q Consensus       190 ~~~~~~~  196 (297)
                      +.+.+..
T Consensus       591 ~l~~~~~  597 (1158)
T 3ei3_A          591 SFELLHK  597 (1158)
T ss_dssp             TCCEEEE
T ss_pred             CCCeEEE
Confidence            7655543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=80.32  E-value=36  Score=31.31  Aligned_cols=154  Identities=8%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL  197 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~  197 (297)
                      ..|.++....+| .|..|..+| +..||..+.+...........|.++.. .++ .|..++.+ -+..||..+++.. .+
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~  136 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SF  136 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Ee
Confidence            458888777776 466666555 788998765432211112234666654 355 45555555 5888998765432 22


Q ss_pred             eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE-eccC----C-CeEEEEEcCC
Q psy3337         198 KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA-REMK----E-SLSALAVRDD  271 (297)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~----~-~v~~~~~s~d  271 (297)
                      ......     .....+..+....++...+..          .+-|..++..+++.... ....    . .|.++...++
T Consensus       137 ~~~~~~-----l~~~~i~~i~~d~~g~lWigt----------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~  201 (758)
T 3ott_A          137 DTRRNG-----LPNNTIYSIIRTKDNQIYVGT----------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT  201 (758)
T ss_dssp             CHHHHC-----CSCSCEEEEEECTTCCEEEEE----------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT
T ss_pred             ccCCCC-----cCCCeEEEEEEcCCCCEEEEe----------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECC
Confidence            110000     000112234455666654432          23577888876553321 1111    1 2888888877


Q ss_pred             CCEEEEEecCCCeEEEEEeCCce
Q psy3337         272 GRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       272 g~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      +..|..|+. . -+..+|..+++
T Consensus       202 ~~~lWigt~-~-Gl~~~~~~~~~  222 (758)
T 3ott_A          202 RQCVWIGTE-G-YLFQYFPSTGQ  222 (758)
T ss_dssp             TTEEEEEEE-E-EEEEEETTTTE
T ss_pred             CCEEEEEEC-C-CCeEEcCCCCe
Confidence            776666775 4 47778776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 7e-13
 Identities = 18/93 (19%), Positives = 39/93 (41%)

Query: 94  SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
           S++K ++    +         G ++  R V     G  +++   D  LR+W +   + + 
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW 186
            + AH   +  +DF  +   +V+ + D    VW
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (143), Expect = 7e-11
 Identities = 19/77 (24%), Positives = 33/77 (42%)

Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG 181
             +  + G  +++G  D  +++W       L+ +  H   +  V F   G+ I+S A D 
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269

Query: 182 KAFVWNSKNGSLSKELK 198
              VW+ KN    K L 
Sbjct: 270 TLRVWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 142 RLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT 201
           + W  P+      +  H   +  V F      +VS ++D    VW+ + G   + LK +T
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
             +G  S    V       +MV+   D  +++W +        ++ H+  + D+ F
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (152), Expect = 6e-12
 Identities = 13/65 (20%), Positives = 27/65 (41%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           V  S++G L++ G  D +  +W   K      +  H   +  +  +  G  + + + D  
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

Query: 183 AFVWN 187
             +WN
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 17/152 (11%)

Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
           +  L V+G  D   +LW   +         H  +I+ + F  +G    + + D    +++
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

Query: 188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD 247
            +                 +    C    V  S     L    +              WD
Sbjct: 255 LRA--------DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD--------FNCNVWD 298

Query: 248 VDSG-RLRLAREMKESLSALAVRDDGRFVAVG 278
                R  +       +S L V DDG  VA G
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRL--WSFPKMKPLLHIEAHSKEIDDVDFSI 169
            F G ES    +    NG+   TG  D   RL      +       +     I  V FS 
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
           SG  +++   D    VW++     +  L 
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLA 309

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 70  EKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNG 129
           E+   + ++ +    D  +    ++ +   R   +T    +    G  +    +    + 
Sbjct: 12  EQLKNQIRDARKACADATLSQITNNIDPVGRIQMRT----RRTLRGHLAKIYAMHWGTDS 67

Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
            L+V+   DG L +W       +  I   S  +    ++ SG  +     D    ++N K
Sbjct: 68  RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127

Query: 190 N 190
            
Sbjct: 128 T 128

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 10/57 (17%), Positives = 24/57 (42%)

Query: 145 SFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT 201
              +M+    +  H  +I  + +      +VS ++DGK  +W+S   +    +   +
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 1e-11
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           ++ +  G   V+ G D  L  W  P    +   +  S  +   D S+  + IV+ + D K
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 183 AFVWN 187
           A V+ 
Sbjct: 330 ATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 6e-05
 Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 3/92 (3%)

Query: 107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD 166
           D  Q       +      ++ +G +         L     P+    ++   H + +  V 
Sbjct: 1   DYFQGAMGSKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVT 58

Query: 167 FSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
            S     + +    G   VW+  +      + 
Sbjct: 59  ISNPTRHVYT-GGKGCVKVWDISHPGNKSPVS 89

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
                      +  H   +  + F+  G+  VS  KD     W +  G+   + K
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (135), Expect = 7e-10
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD------FSISGEQIVS 176
           V  ++N + +++G  D  +  W      PLL ++ H   +  V                +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 177 IAKDGKAFVWNSK 189
            + D KA +W  K
Sbjct: 374 GSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 103 FKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA----- 157
            +  DS      G +     V  +R+G  +V+G  D  ++LW+          +      
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 158 -------HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
                  H   +  V  + + E I+S +KD     W+ K+G+    L+
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 9e-10
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFP--KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
              +++   +     +  + ++     K   +  ++ H+ ++  VD++    +IV+   D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 181 GKAFVWN 187
             A+VW 
Sbjct: 73  RNAYVWT 79

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (126), Expect = 9e-09
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV-DFSISGEQIVSIAKDGKAFVW 186
           +G  + +   D  +++W+   +K    I   ++  D       + + +VSI+ +G     
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

Query: 187 N 187
           N
Sbjct: 309 N 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 108 SVQTVFAGSESLQR----VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID 163
           S   +F       R    V+  +  GD +        +       +        HS +  
Sbjct: 4   SQTALFPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTT 62

Query: 164 DVDFSISGEQIVSIAKDGKAFVWNSKNG 191
               S SG    S    G   +W++   
Sbjct: 63  VAKTSPSGYYCASGDVHGNVRIWDTTQT 90

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 94  SKEKNLR-FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLW 144
           S +K ++ +   T    +T+  G+    + + +      +V+   +G +   
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 5e-08
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVDFSISGEQIVSIA 178
           +         DL+ TG  D ++ ++S  +   ++    AH   ++++ +  +   +VS  
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSG 276

Query: 179 KDGKAFVWN 187
            D     WN
Sbjct: 277 ADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 4/88 (4%)

Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
                 S  +  V                G L  +     K    +      + D+  S 
Sbjct: 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSA 324

Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
             + ++    DGK + +  +     + +
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS---GEQIVSIAKDGKAF 184
           +     T G D  +R+W     K +       +++ +    +      +I+S++ DG   
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 185 VWN 187
            + 
Sbjct: 322 FYE 324

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 6e-07
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVS 176
           L    + ++TG  D  +R++     K LL +  H   +  + ++  G  +VS
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVS 69

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIVSIAKDG 181
           +      D ++  G++    +++    K +   I   + +I  V+F      + ++ KDG
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDG 345

Query: 182 KAFVW 186
           ++F+ 
Sbjct: 346 QSFLE 350

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 11/61 (18%), Positives = 28/61 (45%)

Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
           S+Q +   SE+ + V  L  +   +V+G  D  +++W    ++    +  H+  +  + +
Sbjct: 4   SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 168 S 168
            
Sbjct: 64  D 64

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 132 MVTGGTDGHLRLWSFPKM---------KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           +V+G  DG +++W                L  +  HS  +  + F     QIVS + D  
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDT 288

Query: 183 AFVWN 187
             +W+
Sbjct: 289 ILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG 181
           +  L     L+V+G +D  +RLW       L  +E H + +  + F    ++IVS A DG
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 238

Query: 182 KAFVWNSKNGSLSKELKWNTP 202
           K  VW+       +       
Sbjct: 239 KIKVWDLVAALDPRAPAGTLC 259

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 152 LLHIEAHSKEIDDV-DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFK 210
           L  I   S+    V       ++IVS  +D    +W+       + L  +T   +   + 
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 211 RCRY 214
               
Sbjct: 65  ERVI 68

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 15/171 (8%), Positives = 37/171 (21%), Gaps = 6/171 (3%)

Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
                 S    L  +              +       A +        +  G  + ++A 
Sbjct: 176 ATHYLGSCPASLAASDLAAAPAAAG----IVGAQCTGAQNCSSQAAQANYPGMLVWAVAS 231

Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ-NKR 238
                   +   ++   +  N        F+   + +V        +  L    ++    
Sbjct: 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291

Query: 239 GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGTMFTGSVFVY 288
                       G+            A+    DG       +  T  + +Y
Sbjct: 292 AAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 132 MVTGGTDGHLRLWSF--PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
           + TG  D  + +W+   P   P++   AH+    +    ++   IVS  +D     WN
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVD 166
           S+  V  G       +  S +G  + +   +GH+  W            + H+  I  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 167 F 167
            
Sbjct: 63  T 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 22/63 (34%)

Query: 158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLV 217
           H+K I  +  S  G+ + S   +G    W+   G  ++         I  +    +  L 
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 218 EDS 220
             S
Sbjct: 71  TVS 73

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS 168
           L   G+ +V+G  D  L++WS    K L  +  H+  +      
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 26/171 (15%)

Query: 126 SRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFV 185
             +G  +V+G  D  +R+W       +  +  H      ++       +VS   D    +
Sbjct: 184 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKI 241

Query: 186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ 245
           W+ K G   + L+            +     V  S                      V+ 
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT-----------------VKL 284

Query: 246 WDVDSGRL------RLAREMKESLSALAVRDDGRFVAVGTM-FTGSVFVYI 289
           WD+ +G          +      +  +   +     AVG+   T    + +
Sbjct: 285 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 10/130 (7%)

Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF-SISGEQIVSIAKD 180
              +    +++V+G  D  +++W     + L  ++  +K    V     +   +++ + D
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279

Query: 181 GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI 240
           G   +W+ K G   + L          +  R R      S  +      +     N    
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA-----SNTKLVCAVGSR----NGTEE 330

Query: 241 SYVQQWDVDS 250
           + +   D D 
Sbjct: 331 TKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
           W   ++K    ++ H   +        G +IVS + D    VW++  G   + L 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKP---LLHIEAHSKEIDDVDFSISGEQIVSIA 178
           +++  +  L++    DG L ++ F        LL    +   +   +F  + +  + + 
Sbjct: 17  IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
           M+ +   +A    I D+    S   ++  + DG   V+     + + +L 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL 50

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
           +  S     + T G+DG +  W+    K + +    + E   V  + S   +     D  
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDT 315

Query: 183 AFVWNSKNGSLSKELKWNTPDNIKYLF 209
                + + ++          +I  +F
Sbjct: 316 FKTNAAIDQTIELN-----ASSIYIIF 337

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 15/115 (13%)

Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE------A 157
           K F +        ++   +  +S      V+   DG+L++W    +      +       
Sbjct: 1   KVFIATANAGKAHDA--DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58

Query: 158 HSKEIDDVDF-------SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNI 205
           H   +  VD        +     + + +  G    +       +K++ +   D +
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 126 SRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD----VDFSISGEQIVSIAKDG 181
           + +G+ + + G DG LR W     + +  +  H  +I+     +     G+ +       
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

Query: 182 KAFVWNSKNGSLSKE 196
             F+       +  +
Sbjct: 358 VKFLKKGWRSGMGAD 372

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 12/175 (6%)

Query: 130 DLMVTGGTDGHLRLWSFPKMKPL--LHIEAHSKEIDDVDFSISGEQI-VSIAKDGKAFVW 186
           D ++       L +    KM     + I            +  G     ++ K       
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 187 NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA----QNKRGISY 242
           +   G     +  +TP+      +         SP    L    +P+       +   + 
Sbjct: 62  DLVTGETLGRIDLSTPE-----ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116

Query: 243 VQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR 297
           V  +D ++   R A E    ++ LA   DG  +         +       ++   
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKP 171

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 14/167 (8%), Positives = 32/167 (19%), Gaps = 13/167 (7%)

Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGEQI-VSIAKDGK 182
           L    + M+      +L +                         +       V     G 
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR---- 238
            +  +      +     ++                  SP    ++   NP  +       
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYS----FAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 239 GISYVQQWDVDSGRLRLAREM---KESLSALAVRDDGRFVAVGTMFT 282
               ++ +    G              +  +   DDG     G    
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY 166

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 11/191 (5%)

Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI 162
           +  D          +        R+G    V  GT+G   +       P          I
Sbjct: 143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-----I 197

Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS--KELKWNTPDNIKYLFKRCRYGLVEDS 220
           +   +S    ++V     GK    +  +G       ++  T       ++   +  V   
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257

Query: 221 PKRSRLFTLANPLAQN--KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVG 278
               R++ L +   +   K    +V   D  +G      EM   + ++ V  D + +   
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 317

Query: 279 TM-FTGSVFVY 288
                 +++++
Sbjct: 318 LSTGDKTLYIH 328

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.36
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.31
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.2
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.06
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.79
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.76
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.76
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.71
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.46
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.37
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.99
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.38
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.21
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.2
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.14
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.1
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.07
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.07
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.04
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.87
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.52
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.46
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.33
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.76
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.66
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.46
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.41
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.69
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.61
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.44
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.07
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.36
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.34
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.61

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-32  Score=226.29  Aligned_cols=234  Identities=12%  Similarity=0.154  Sum_probs=184.1

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++++|++|+.|+.+++|++...............       ...  ...                        
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~v--~~~------------------------  147 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-------PAC--YAL------------------------  147 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-------SCE--EEE------------------------
T ss_pred             EEEEEcCCCCEEEEeeccccccccccccccccccccccccc-------ccc--ccc------------------------
Confidence            46668999999999999999999998643211100000000       000  000                        


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      ...+...+..+++.|+.+++ +..+++...... +|...|.+++|+++++.+++|+.|+.|++||+++++.+..+. |..
T Consensus       148 ~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~  225 (337)
T d1gxra_         148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS  225 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccceeecccc-ccc
Confidence            00001112446788999999 888888887777 999999999999999999999999999999999999887764 788


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|.+++|+|++++|++++.|+.+++||+++++..... .|.          ..+..++|+|++++|++++        .|
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~----------~~i~~v~~s~~g~~l~s~s--------~D  286 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-LHE----------SCVLSLKFAYCGKWFVSTG--------KD  286 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC-CCS----------SCEEEEEECTTSSEEEEEE--------TT
T ss_pred             ceEEEEEcccccccceecccccccccccccccccccc-ccc----------cccceEEECCCCCEEEEEe--------CC
Confidence            9999999999999999999999999999887765432 232          1234588999999999854        49


Q ss_pred             CeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         241 SYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +.|++||+.+++.+..+.+...|.+++|+|++++|++|+. ||+|+|||+
T Consensus       287 g~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~-D~~I~vWdl  335 (337)
T d1gxra_         287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-DKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEE
Confidence            9999999999999988887777999999999999999999 999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-32  Score=227.79  Aligned_cols=245  Identities=11%  Similarity=0.115  Sum_probs=181.9

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|+++|++||+|+.|+.++||++...........          +++...-     ..                - .
T Consensus        62 ~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~v-----~~----------------v-~  109 (311)
T d1nr0a1          62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI----------PVFSGPV-----KD----------------I-S  109 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE----------ECSSSCE-----EE----------------E-E
T ss_pred             EEEEEeCCCCeEeccccCceEeeeeeecccccccccc----------ccccCcc-----cc----------------c-c
Confidence            5667899999999999999999998865321100000          0000000     00                0 0


Q ss_pred             CCCCCCCcC-CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEeccc
Q psy3337          82 KIEDPPILN-SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        82 ~~~~~~~l~-~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~  158 (297)
                      ...+...+. .+...+..+++ +..+++....+. +|...|++++|+|++++ |++|+.|+.|++||+++++....+..|
T Consensus       110 ~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~  188 (311)
T d1nr0a1         110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH  188 (311)
T ss_dssp             ECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            001111112 23334667888 888888888887 99999999999999875 889999999999999999999999999


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ...|+++.|+|++++|++++.|+.|++||+.++..+..+......   .......+..++|+|++++|+++        +
T Consensus       189 ~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~---~~~h~~~V~~~~~s~~~~~l~tg--------s  257 (311)
T d1nr0a1         189 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK---NVAHSGSVFGLTWSPDGTKIASA--------S  257 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS---SCSSSSCEEEEEECTTSSEEEEE--------E
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccc---cccccccccccccCCCCCEEEEE--------e
Confidence            999999999999999999999999999999998887766533210   00011234568899999999984        4


Q ss_pred             CCCeEEEEeCCCCceEEEeccCCC--eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKES--LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .|+.|++||+++++++..+..+..  ...+.+.+++.+|++++. ||.|++||+.
T Consensus       258 ~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~-dG~i~~wd~d  311 (311)
T d1nr0a1         258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA-NGFINFVNPE  311 (311)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET-TCCEEEEETT
T ss_pred             CCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEEC-CCEEEEEeCC
Confidence            599999999999999999887654  333445556678999999 9999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-31  Score=218.65  Aligned_cols=179  Identities=17%  Similarity=0.272  Sum_probs=161.9

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEcc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI  169 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  169 (297)
                      .+++.|+.+++ ++.+++.+..+. +|...+.+++|+|++++|++++.|+.|++|++.+++.+..+..|...+.++.|+|
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~  195 (317)
T d1vyhc1         117 VSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP  195 (317)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred             EeeccCcceeEeecccceeeeEEc-cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEee
Confidence            36778999999 999999999988 9999999999999999999999999999999999999999999999999999987


Q ss_pred             CC--------------------CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         170 SG--------------------EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       170 ~~--------------------~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      ++                    .++++++.|+.|++||+++++++..+..|..          .+..++++|++.+|+++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN----------WVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS----------CEEEEEECSSSSCEEEE
T ss_pred             ccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC----------CEEEEEECCCCCEEEEE
Confidence            53                    4688999999999999999999998887641          23357789999999985


Q ss_pred             ccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         230 ANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       230 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      +        .|+.|++||+.+++++..+.+|.. |++++|+|++++|++|+. ||+|+|||
T Consensus       266 ~--------~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~-Dg~i~iWd  317 (317)
T d1vyhc1         266 A--------DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWE  317 (317)
T ss_dssp             E--------TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET-TSEEEEEC
T ss_pred             E--------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEeC
Confidence            4        499999999999999999998877 999999999999999999 99999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-30  Score=219.12  Aligned_cols=243  Identities=10%  Similarity=0.079  Sum_probs=187.1

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhc-ccccchhhhhccCCCcccccccCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRK-RKEKDKENAKQKGGKKEKSNEKGKNK   79 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
                      ++|+.|+++|++|++|+ |+.|+||++...............       ++.. -....                     
T Consensus        54 V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~-------~h~~~I~~v~---------------------  104 (337)
T d1gxra_          54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL-------NRDNYIRSCK---------------------  104 (337)
T ss_dssp             CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECS-------CTTSBEEEEE---------------------
T ss_pred             EEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeec-------CCCCcEEEEE---------------------
Confidence            46777999999998876 899999998653221100000000       0000 00000                     


Q ss_pred             CCCCCCCCCcCCCCCCCceEEE-EeeCC--CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec
Q psy3337          80 KDKIEDPPILNSIDSKEKNLRF-GFKTF--DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE  156 (297)
Q Consensus        80 ~~~~~~~~~l~~~~~~d~~i~~-~~~~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  156 (297)
                        ..++.. ...+++.|++|++ ++...  +....+. +|...|.+++|+|++.++++++.|+.|++|++.+++......
T Consensus       105 --~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  180 (337)
T d1gxra_         105 --LLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ  180 (337)
T ss_dssp             --ECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             --EcCCCC-EEEEeecccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence              001111 1457889999999 76543  4455565 899999999999999999999999999999999999999999


Q ss_pred             cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccc
Q psy3337         157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQN  236 (297)
Q Consensus       157 ~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~  236 (297)
                      .|...|.+++|++++..+++++.|+.+++||+++++.+..+....           .+..++|+|++.+++++.      
T Consensus       181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~-----------~i~~l~~~~~~~~l~~~~------  243 (337)
T d1gxra_         181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-----------QIFSLGYCPTGEWLAVGM------  243 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-----------CEEEEEECTTSSEEEEEE------
T ss_pred             ccccccccccccccccccccccccccccccccccceeeccccccc-----------ceEEEEEcccccccceec------
Confidence            999999999999999999999999999999999998877665322           233578999999999844      


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                        .++.|++||+.+++......+...|.+++|+|+|++|++++. ||.|++||+.+++++
T Consensus       244 --~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~-Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         244 --ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASI  300 (337)
T ss_dssp             --TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEE
T ss_pred             --cccccccccccccccccccccccccceEEECCCCCEEEEEeC-CCeEEEEECCCCCEE
Confidence              499999999998887655544445999999999999999999 999999999988765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=4.4e-30  Score=213.68  Aligned_cols=187  Identities=13%  Similarity=0.123  Sum_probs=160.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeE--EEEecCCCCcEEEEEEecCCCEEEEEcC--CCcEEEEeCCCCeeeEEeccccCCeeE
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSV--QTVFAGSESLQRVVRLSRNGDLMVTGGT--DGHLRLWSFPKMKPLLHIEAHSKEIDD  164 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~  164 (297)
                      ..+++.|++|++ ++.++...  ..+. +|...|.+++|+|++++|++++.  +..+++|++++++....+.+|...|++
T Consensus        73 latg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             EeccccCceEeeeeeeccccccccccc-cccCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            457889999999 88777644  3455 89999999999999999999876  456999999999999999999999999


Q ss_pred             EEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeE
Q psy3337         165 VDFSISGEQ-IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV  243 (297)
Q Consensus       165 ~~~sp~~~~-l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i  243 (297)
                      ++|+|++.+ |++++.|+.|++||+++++....+..|..          .+..+.++|++.++++++        .|+.|
T Consensus       152 v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~----------~i~~v~~~p~~~~l~~~~--------~d~~v  213 (311)
T d1nr0a1         152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK----------FVHSVRYNPDGSLFASTG--------GDGTI  213 (311)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS----------CEEEEEECTTSSEEEEEE--------TTSCE
T ss_pred             ccccccceeeecccccccccccccccccccccccccccc----------cccccccCcccccccccc--------ccccc
Confidence            999999885 78899999999999999888887776641          234578999999999854        49999


Q ss_pred             EEEeCCCCceEEEec-------cCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         244 QQWDVDSGRLRLARE-------MKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~-------~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ++||+.++..+..+.       +|.. |.+++|+|++++|++|+. ||.|+|||+.+++++
T Consensus       214 ~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVE  273 (311)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCEEEEEeC-CCeEEEEECCCCcEE
Confidence            999999988777664       2444 999999999999999999 999999999998865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.4e-29  Score=215.59  Aligned_cols=206  Identities=12%  Similarity=0.060  Sum_probs=164.5

Q ss_pred             CcceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCC
Q psy3337           1 MNCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKK   80 (297)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
                      ++|..|+++|++||+|+.|+.++||++.....                                                
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~------------------------------------------------   41 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------------------------------------------   41 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------------------------------------------
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCE------------------------------------------------
Confidence            57888999999999999999999998754221                                                


Q ss_pred             CCCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe--eeEEeccc
Q psy3337          81 DKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK--PLLHIEAH  158 (297)
Q Consensus        81 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~  158 (297)
                                                ..+..+. +|...|++++|+|++++|++|+.|++|++||+.++.  +...+..|
T Consensus        42 --------------------------~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~   94 (371)
T d1k8kc_          42 --------------------------VQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI   94 (371)
T ss_dssp             --------------------------EEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred             --------------------------EEEEEec-CCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccc
Confidence                                      1245666 999999999999999999999999999999998765  44566788


Q ss_pred             cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC
Q psy3337         159 SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR  238 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~  238 (297)
                      ...|.+++|+|++++|++++.|+++++|++................      ...+..++|+|++.+|+++        +
T Consensus        95 ~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~------~~~v~~v~~~p~~~~l~s~--------s  160 (371)
T d1k8kc_          95 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI------RSTVLSLDWHPNSVLLAAG--------S  160 (371)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC------CSCEEEEEECTTSSEEEEE--------E
T ss_pred             cccccccccccccccceeecccCcceeeeeeccccccccccccccc------ccccccccccccccceecc--------c
Confidence            9999999999999999999999999999987654432222111000      1123458899999999884        4


Q ss_pred             CCCeEEEEeCCCC------------------ceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         239 GISYVQQWDVDSG------------------RLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       239 ~d~~i~~wd~~~~------------------~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .|+.|++||....                  +.+.....|.. |.+++|+|+|++|++++. |+.|++||+.+++.+
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLADADKKMAV  236 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEEGGGTTEE
T ss_pred             cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-CCcceEEeeecccce
Confidence            5999999998642                  34455556665 999999999999999999 999999999887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.9e-29  Score=210.38  Aligned_cols=238  Identities=15%  Similarity=0.123  Sum_probs=180.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|+.|++++.++++|+.|+.+++|+...............        ++...........                   
T Consensus       101 ~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-------------------  153 (340)
T d1tbga_         101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA--------GHTGYLSCCRFLD-------------------  153 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC--------CCSSCEEEEEEEE-------------------
T ss_pred             EeeEeeccceeeeeecccceeecccccccccccccceecc--------ccccccccccccc-------------------
Confidence            4566899999999999999999998754332110000000        0000000000000                   


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                           .........|..... ............ .+...+....+.+.+.++++|+.|+.|++||+++++++..+.+|..
T Consensus       154 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~  227 (340)
T d1tbga_         154 -----DNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES  227 (340)
T ss_dssp             -----TTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS
T ss_pred             -----cccccccccccccccccccccccccccc-ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCC
Confidence                 000223445556666 555555555555 7888899999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCC
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI  240 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d  240 (297)
                      .|++++|+|++++|++++.|+.|++||++....+..+......        ..+..++|+|++.+|++        |+.|
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~--------g~~d  291 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII--------CGITSVSFSKSGRLLLA--------GYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC--------SCEEEEEECSSSCEEEE--------EETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccccc--------CceEEEEECCCCCEEEE--------EECC
Confidence            9999999999999999999999999999988877666433211        12345789999999998        4559


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         241 SYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       241 ~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      +.|++||+.+++++..+.+|.. |++++|+|++.+|++|+. ||.|+|||
T Consensus       292 g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd  340 (340)
T d1tbga_         292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIWN  340 (340)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-TSCEEEEC
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc-CCEEEEeC
Confidence            9999999999999999999877 999999999999999999 99999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-29  Score=215.12  Aligned_cols=245  Identities=15%  Similarity=0.142  Sum_probs=170.8

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      +|..|++++++|++|+.|+.+++|+...........            ++.......                       
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~------------~h~~~v~~~-----------------------  169 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ------------GHEQDIYSL-----------------------  169 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------------CCSSCEEEE-----------------------
T ss_pred             EEEEECCCCCcceecccccccccccccccccccccc------------ccccccccc-----------------------
Confidence            456689999999999999999999876543221000            000000000                       


Q ss_pred             CCCCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEe-cCCCEEEEEcCCCcEEEEeCCCCeeeEEe----
Q psy3337          82 KIEDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLS-RNGDLMVTGGTDGHLRLWSFPKMKPLLHI----  155 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~~~~~~~----  155 (297)
                      ...........++.++.+++ +..+........ .+...+ ++.++ +++++|++|+.|+.|++||+.++..+..+    
T Consensus       170 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  247 (388)
T d1erja_         170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVT-TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN  247 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE-EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             ccccccccccccccceeeeeeeccccccccccc-cccccc-cccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc
Confidence            00000111346778899999 888777766665 555544 55555 48899999999999999999988766554    


Q ss_pred             ---ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCc--eEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         156 ---EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNI--KYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       156 ---~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                         .+|...|.+++|+|++++|++++.|+.|++||++++..............  ........+..++|+|++++|++  
T Consensus       248 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--  325 (388)
T d1erja_         248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--  325 (388)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE--
T ss_pred             ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEE--
Confidence               36888999999999999999999999999999987655443322211100  01111223456889999999998  


Q ss_pred             cCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEE------cCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         231 NPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAV------RDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       231 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~------s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                            |+.|+.|++||+.+++++..+.+|.. |.++++      +|++.+|++|+. ||+|+||+++.
T Consensus       326 ------g~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~-Dg~I~iW~~~k  387 (388)
T d1erja_         326 ------GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG-DCKARIWKYKK  387 (388)
T ss_dssp             ------EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET-TSEEEEEEEEE
T ss_pred             ------EeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC-CCEEEEEeeee
Confidence                  45599999999999999999999877 998874      679999999999 99999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.7e-28  Score=207.76  Aligned_cols=194  Identities=14%  Similarity=0.158  Sum_probs=152.2

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|+.|++ +...++.+..+. +|...|.++.|++++..+++++.++.+++||..+.........+...+....+.
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             ceecccccccccccccccccccccc-cccccccccccccccccccccccceeeeeeeccccccccccccccccccccccC
Confidence            457889999999 888888888887 999999999999999999999999999999999888777776555544444444


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +++++|++++.|+.|++||+.++..+..+......   .......+..++|+|++.+|++++        .|+.|++||+
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~s~~~~~l~s~~--------~d~~i~iwd~  283 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES---GTGHKDSVYSVVFTRDGQSVVSGS--------LDRSVKLWNL  283 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEEEEEECTTSSEEEEEE--------TTSEEEEEEC
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeecccccc---ccCCCCCEEEEEECCCCCEEEEEE--------CCCcEEEEec
Confidence            58899999999999999999998887766432210   001122355688999999999854        4999999999


Q ss_pred             CCCce------------EEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         249 DSGRL------------RLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       249 ~~~~~------------~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+++.            ......|.. |.+++|+|+|++|++|+. ||.|++||+.+++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~  343 (388)
T d1erja_         284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPL  343 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEE
T ss_pred             cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-CCEEEEEECCCCcEE
Confidence            86432            333444555 999999999999999999 999999999998865

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.1e-28  Score=203.54  Aligned_cols=182  Identities=16%  Similarity=0.242  Sum_probs=144.5

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEe---ccccCCeeEEE
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHI---EAHSKEIDDVD  166 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~  166 (297)
                      +.+.++.+++ +..+++.+..+. +|...|++++|+|++.+ +++++.|+.|++||+...+....+   ..|...|.+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eccccceEEEEeecccccceeee-ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            4455777888 888899998888 99999999999998864 778999999999999887765544   45677899999


Q ss_pred             EccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEE
Q psy3337         167 FSIS-GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ  245 (297)
Q Consensus       167 ~sp~-~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~  245 (297)
                      |+|+ +.+|++++.|+.|++||+++++.+..+..|........+.      +.+ |++++|++++        .|+.|++
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s------~~~-~dg~~l~s~s--------~D~~i~i  277 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA------LSW-LDSQKFATVG--------ADATIRV  277 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE------EEE-SSSSEEEEEE--------TTSEEEE
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceee------eec-cCCCEEEEEe--------CCCeEEE
Confidence            9996 6889999999999999999999999998776433222222      222 6788888854        4999999


Q ss_pred             EeCCCCceEEEeccCCC---eEEEEEcCC-CCEEEEEecCCCeEEEEEe
Q psy3337         246 WDVDSGRLRLAREMKES---LSALAVRDD-GRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       246 wd~~~~~~~~~~~~~~~---v~~~~~s~d-g~~l~~~~~~dg~i~vwd~  290 (297)
                      ||+++++++..+..+..   +..+++.+. +.+|++++. ||.|++||+
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~vwdl  325 (325)
T d1pgua1         278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYEL  325 (325)
T ss_dssp             EETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEET
T ss_pred             EECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC-CCEEEEEEC
Confidence            99999999988776543   444444432 347889999 999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.9e-27  Score=193.82  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=122.4

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE-EeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL-HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK  195 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~  195 (297)
                      ...+.+++|+|++++|++|+.|+.|++||+++++... ....|...|.+++|+|++.+|++++.|+.|++||+.++..+.
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3457799999999999999999999999998776543 445688999999999999999999999999999998776554


Q ss_pred             eeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceE--EEeccC-CC-eEEEEEcCC
Q psy3337         196 ELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLR--LAREMK-ES-LSALAVRDD  271 (297)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~--~~~~~~-~~-v~~~~~s~d  271 (297)
                      .......       ....+..++|+|++.+|+++        +.|+.|++||+.++...  .....+ .. +.++.| ++
T Consensus       216 ~~~~~~~-------h~~~v~~l~~s~~~~~l~sg--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~  279 (299)
T d1nr0a2         216 HTNSWTF-------HTAKVACVSWSPDNVRLATG--------SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LN  279 (299)
T ss_dssp             CCCCCCC-------CSSCEEEEEECTTSSEEEEE--------ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EE
T ss_pred             ccccccc-------cccccccccccccccceEEE--------cCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CC
Confidence            3322110       11234458899999999984        45999999999885432  333333 33 666654 56


Q ss_pred             CCEEEEEecCCCeEEEEEeC
Q psy3337         272 GRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       272 g~~l~~~~~~dg~i~vwd~~  291 (297)
                      +.+|++++. |+.|++||+.
T Consensus       280 ~~~l~s~s~-D~~i~iWdl~  298 (299)
T d1nr0a2         280 ETTIVSAGQ-DSNIKFWNVP  298 (299)
T ss_dssp             TTEEEEEET-TSCEEEEECC
T ss_pred             CCEEEEEeC-CCEEEEEecc
Confidence            789999999 9999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4.8e-26  Score=189.54  Aligned_cols=144  Identities=14%  Similarity=0.191  Sum_probs=111.9

Q ss_pred             EEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeee
Q psy3337         134 TGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCR  213 (297)
Q Consensus       134 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (297)
                      ....+.....+.............+...+....+.+.+.++++++.|+.|++||+++++.+..+..|..          .
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~----------~  228 (340)
T d1tbga_         159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES----------D  228 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS----------C
T ss_pred             cccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCC----------C
Confidence            333333444443333333333344566788888999999999999999999999999999988887652          2


Q ss_pred             eeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc--CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         214 YGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM--KES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       214 ~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~--~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      +..++|+|++.+|++++        .|+.|++||+...+.+..+..  +.. |.+++|+|++++|++|+. ||.|++||+
T Consensus       229 i~~v~~~p~~~~l~s~s--------~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~  299 (340)
T d1tbga_         229 INAICFFPNGNAFATGS--------DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDA  299 (340)
T ss_dssp             EEEEEECTTSSEEEEEE--------TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEe--------CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC-CCEEEEEEC
Confidence            34578999999999854        499999999999887776643  333 999999999999999999 999999999


Q ss_pred             CCceec
Q psy3337         291 FSLQMC  296 (297)
Q Consensus       291 ~~~~~~  296 (297)
                      .+++++
T Consensus       300 ~~~~~~  305 (340)
T d1tbga_         300 LKADRA  305 (340)
T ss_dssp             TTCCEE
T ss_pred             CCCcEE
Confidence            988765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.4e-26  Score=194.45  Aligned_cols=166  Identities=14%  Similarity=0.061  Sum_probs=128.5

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee----eEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP----LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      +|...|++++|+|++++|++|+.|+.|++|++.....    ......|...|.+++|+|++++|++++.|++|++||+..
T Consensus        93 ~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_          93 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeecc
Confidence            7888999999999999999999999999999865442    334567889999999999999999999999999999865


Q ss_pred             CceeeeeeccC-----CCCceEEE----EeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC
Q psy3337         191 GSLSKELKWNT-----PDNIKYLF----KRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE  261 (297)
Q Consensus       191 ~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~  261 (297)
                      ...........     +.. ....    ....+..++|+|++.+|++++.        |+.|++||+.+++.+..+..|.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~--------d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         173 KEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANGSRVAWVSH--------DSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             TTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSSSEEEEEET--------TTEEEEEEGGGTTEEEEEECSS
T ss_pred             Cccccccccccccccccce-eeeeeccCccCcEEEEEeeccccccccccc--------CCcceEEeeecccceeeeeccc
Confidence            43221111000     000 0111    1123456889999999998554        9999999999999999998877


Q ss_pred             C-eEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         262 S-LSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       262 ~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      . |.+++|+||+.+|++|.  |+.+++|...
T Consensus       244 ~~v~s~~fs~d~~~la~g~--d~~~~~~~~~  272 (371)
T d1k8kc_         244 LPLLAVTFITESSLVAAGH--DCFPVLFTYD  272 (371)
T ss_dssp             CCEEEEEEEETTEEEEEET--TSSCEEEEEE
T ss_pred             ccceeeeecCCCCEEEEEc--CCceEEEEee
Confidence            6 99999999998888765  7776666543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-26  Score=195.44  Aligned_cols=192  Identities=14%  Similarity=0.124  Sum_probs=143.4

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEE-----e----cCCCCcEEEEEEecC-----CCEEEEEcCCCcEEEEeCCCCe-----
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTV-----F----AGSESLQRVVRLSRN-----GDLMVTGGTDGHLRLWSFPKMK-----  150 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~-----~----~~h~~~v~~~~~s~~-----g~~l~s~~~d~~i~iwd~~~~~-----  150 (297)
                      .+++.|+.+++ +.........+     .    ..+...+..++|.++     +.++++++.|+.+++|++....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            46777899998 55443321111     1    124556778888875     3688999999999999974211     


Q ss_pred             -------------eeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeee
Q psy3337         151 -------------PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLV  217 (297)
Q Consensus       151 -------------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (297)
                                   .......+...+.+++|+|++ +|++|+.|++|++||+.+++++..+....    .+......+..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~----~l~~h~~~V~~l  237 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH----SMINNSNSIRSV  237 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-------CCCCCEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc----ccccccceEEEc
Confidence                         011122345668999999997 89999999999999999998887765432    111223446678


Q ss_pred             eeCCCCeEEEEeccCcccccCCCC---eEEEEeCCCCceEEEec-------------cCCC-eEEEEEcCCCCEEEEEec
Q psy3337         218 EDSPKRSRLFTLANPLAQNKRGIS---YVQQWDVDSGRLRLARE-------------MKES-LSALAVRDDGRFVAVGTM  280 (297)
Q Consensus       218 ~~s~~~~~l~~~~~~~~~~g~~d~---~i~~wd~~~~~~~~~~~-------------~~~~-v~~~~~s~dg~~l~~~~~  280 (297)
                      +|+|++++|++++.        |+   .|++||+.+++++..+.             +|.. |++++|+||+++|++|+.
T Consensus       238 ~~spdg~~l~sgs~--------D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         238 KFSPQGSLLAIAHD--------SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             EECSSTTEEEEEEE--------ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             ccccccceeeeecC--------CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence            99999999999554        65   59999999998887764             5655 999999999999999999


Q ss_pred             CCCeEEEEEeCCceec
Q psy3337         281 FTGSVFVYIAFSLQMC  296 (297)
Q Consensus       281 ~dg~i~vwd~~~~~~~  296 (297)
                       |++|+|||+.+++++
T Consensus       310 -D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         310 -DGKLRFWDVKTKERI  324 (393)
T ss_dssp             -TSEEEEEETTTTEEE
T ss_pred             -CCEEEEEECCCCCEE
Confidence             999999999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1e-25  Score=185.04  Aligned_cols=195  Identities=16%  Similarity=0.298  Sum_probs=168.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ..+++.|++|+| ++.+++.+.++. +|...|.+++|+|++.+++++..++.+.+|+....+....+..|...+.++.|+
T Consensus        32 l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (317)
T d1vyhc1          32 MVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM  110 (317)
T ss_dssp             EEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeecc
Confidence            457889999999 899999999998 999999999999999999999999999999999888888899999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc-----------------
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN-----------------  231 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-----------------  231 (297)
                      |++..+++++.|+.+++||+++++.+..+..|...          +..++++|++.+|++++.                 
T Consensus       111 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~  180 (317)
T d1vyhc1         111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW----------VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE  180 (317)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC----------EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCceEEeeccCcceeEeecccceeeeEEccCCCc----------ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE
Confidence            99999999999999999999999888888766422          112334444444443321                 


Q ss_pred             -------------------------------------CcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCCCC
Q psy3337         232 -------------------------------------PLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGR  273 (297)
Q Consensus       232 -------------------------------------~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~  273 (297)
                                                           ..+++|+.|+.|++||+.+++++..+.+|.. |.+++|+|+++
T Consensus       181 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  260 (317)
T d1vyhc1         181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK  260 (317)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCC
Confidence                                                 1356678899999999999999999998877 99999999999


Q ss_pred             EEEEEecCCCeEEEEEeCCceec
Q psy3337         274 FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       274 ~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +|++|+. ||.|++||+.+++++
T Consensus       261 ~l~s~~~-dg~i~iwd~~~~~~~  282 (317)
T d1vyhc1         261 FILSCAD-DKTLRVWDYKNKRCM  282 (317)
T ss_dssp             CEEEEET-TTEEEEECCTTSCCC
T ss_pred             EEEEEEC-CCeEEEEECCCCcEE
Confidence            9999999 999999999988765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.3e-25  Score=185.00  Aligned_cols=190  Identities=13%  Similarity=0.077  Sum_probs=152.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeE--------EEEecCCCCcEEEEEEecCCCEEEEEcC--CCcEEEEeCCCCeeeEEeccc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSV--------QTVFAGSESLQRVVRLSRNGDLMVTGGT--DGHLRLWSFPKMKPLLHIEAH  158 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~--------~~~~~~h~~~v~~~~~s~~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~  158 (297)
                      ..+++.|++|++ +...++..        ..+. .|...|.+++|++++++|++++.  ++.+.+|+..+++.+..+.+|
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h  158 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH  158 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec
Confidence            457899999999 76554322        1223 68899999999999999887654  678999999999999999999


Q ss_pred             cCCeeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCC-CeEEEEeccCcccc
Q psy3337         159 SKEIDDVDFSISGEQ-IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPK-RSRLFTLANPLAQN  236 (297)
Q Consensus       159 ~~~v~~~~~sp~~~~-l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~~~  236 (297)
                      ...|.+++|+|++.+ +++++.|+.+++||+...+....+..+.... .      .+..++|+|+ +.+++++       
T Consensus       159 ~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~-~------~v~~v~~~pd~~~~l~s~-------  224 (325)
T d1pgua1         159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG-S------FVRDVEFSPDSGEFVITV-------  224 (325)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT-C------CEEEEEECSTTCCEEEEE-------
T ss_pred             ccccccccccccccceEEEeecccccccccccccccceecccccCCC-C------ccEEeeeccccceecccc-------
Confidence            999999999998865 6789999999999998877666654433211 1      2335789997 5677774       


Q ss_pred             cCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEc---CCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGRLRLAREMKES-LSALAVR---DDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s---~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       +.|+.|++||+++++.+..+.+|.. +.++.|+   |||++|++++. |+.|+|||+.+++++
T Consensus       225 -~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~-D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         225 -GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCV  286 (325)
T ss_dssp             -ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET-TSEEEEEETTTTEEE
T ss_pred             -ccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeC-CCeEEEEECCCCCEE
Confidence             4499999999999999999987765 5555554   68999999999 999999999998865

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-25  Score=182.21  Aligned_cols=180  Identities=16%  Similarity=0.190  Sum_probs=146.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ...++.|+.+++ +......+..+. +|...+..  +++++.+|++|+.|+.|++||++.++.+..+.+|...+.+++++
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  226 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK  226 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred             eeeecCCCeEEEeecccceeeEEEc-Cccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC
Confidence            346778999999 998888888887 88877554  45578899999999999999999999999999999999988886


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +  ++|++++.|+.|++||+...+....+..+......       .  .++.+++.++++        |+.|+.|++||+
T Consensus       227 ~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~s--------~s~Dg~i~iwd~  287 (342)
T d2ovrb2         227 D--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA-------V--TCLQFNKNFVIT--------SSDDGTVKLWDL  287 (342)
T ss_dssp             T--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC-------E--EEEEECSSEEEE--------EETTSEEEEEET
T ss_pred             C--CEEEEEcCCCEEEEEecccccccccccccceeeec-------e--eecccCCCeeEE--------EcCCCEEEEEEC
Confidence            5  59999999999999999988887777654422111       1  122344567777        445999999999


Q ss_pred             CCCceEEEec-----cCCC-eEEEEEcCCCCEEEEEecCCCe----EEEEEeCC
Q psy3337         249 DSGRLRLARE-----MKES-LSALAVRDDGRFVAVGTMFTGS----VFVYIAFS  292 (297)
Q Consensus       249 ~~~~~~~~~~-----~~~~-v~~~~~s~dg~~l~~~~~~dg~----i~vwd~~~  292 (297)
                      ++++++..+.     +|.. |++++|+|++.+|++|+. ||+    |++||+..
T Consensus       288 ~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~-dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR-NGTEETKLLVLDFDV  340 (342)
T ss_dssp             TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS-SSSSCCEEEEEECCC
T ss_pred             CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC-CCCCeeEEEEEeCCC
Confidence            9999888764     3444 999999999999999998 885    99999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=9.7e-25  Score=179.31  Aligned_cols=179  Identities=12%  Similarity=0.143  Sum_probs=134.3

Q ss_pred             CCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-cccCCeeEEEEccCCCEEEEEeCCCcEE
Q psy3337         106 FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGEQIVSIAKDGKAF  184 (297)
Q Consensus       106 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~d~~v~  184 (297)
                      |...+.+. ||...|++++|+|++++|++|+.|+.|++||+++++.+..+. .|...|++++|+|++++ ++++.|+.++
T Consensus         2 g~~~~~~~-GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEE
T ss_pred             CccceEcC-CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEE
Confidence            44566777 999999999999999999999999999999999999888774 68999999999999875 5667899999


Q ss_pred             EEEcCCCcee---eeeecc---------CCCCceEEEE------------------eeeeeeeeeCCCCeEEEEeccCcc
Q psy3337         185 VWNSKNGSLS---KELKWN---------TPDNIKYLFK------------------RCRYGLVEDSPKRSRLFTLANPLA  234 (297)
Q Consensus       185 lwd~~~~~~~---~~~~~~---------~~~~~~~~~~------------------~~~~~~~~~s~~~~~l~~~~~~~~  234 (297)
                      +|+.......   .....+         .+++......                  ......++++|++.++++      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------  153 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV------  153 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE------
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------
Confidence            9997532210   000000         0111111100                  011235778888888887      


Q ss_pred             cccCCCCeEEEEeCCCCceEEE-eccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         235 QNKRGISYVQQWDVDSGRLRLA-REMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       235 ~~g~~d~~i~~wd~~~~~~~~~-~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                        |+.|+.|++||+.+++.... ...| ..|.+++|+|++.+|++++. |+.|++||+.++..
T Consensus       154 --g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~  213 (299)
T d1nr0a2         154 --GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNFE  213 (299)
T ss_dssp             --EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGTTE
T ss_pred             --cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence              55599999999988765432 2334 44999999999999999999 99999999987654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.3e-25  Score=189.72  Aligned_cols=163  Identities=17%  Similarity=0.186  Sum_probs=122.8

Q ss_pred             CCCCCCCceEEE-EeeCCC---------------eEEEEe--cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee
Q psy3337          90 NSIDSKEKNLRF-GFKTFD---------------SVQTVF--AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP  151 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~---------------~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  151 (297)
                      ..+++.|+++++ ++....               ......  ..+...+++++|+|++ +|++|+.|++|+|||+.++++
T Consensus       139 ~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~  217 (393)
T d1sq9a_         139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP  217 (393)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccc
Confidence            346778899998 653221               001111  2456678999999998 899999999999999999887


Q ss_pred             eEEe------ccccCCeeEEEEccCCCEEEEEeCCCc---EEEEEcCCCceeeeeeccCCCCce---EEEEeeeeeeeee
Q psy3337         152 LLHI------EAHSKEIDDVDFSISGEQIVSIAKDGK---AFVWNSKNGSLSKELKWNTPDNIK---YLFKRCRYGLVED  219 (297)
Q Consensus       152 ~~~~------~~~~~~v~~~~~sp~~~~l~s~~~d~~---v~lwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  219 (297)
                      +..+      .+|...|.+++|+|++++|++++.|++   |++||+++++.+..+.........   +.-+...+..++|
T Consensus       218 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f  297 (393)
T d1sq9a_         218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  297 (393)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             ccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeecc
Confidence            6544      468999999999999999999999875   899999999988887543211100   0012234567999


Q ss_pred             CCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC
Q psy3337         220 SPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE  261 (297)
Q Consensus       220 s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~  261 (297)
                      +|++++|+++        +.|++|++||+.+++++..+.+|.
T Consensus       298 spd~~~l~S~--------s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         298 NDSGETLCSA--------GWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             CSSSSEEEEE--------ETTSEEEEEETTTTEEEEEEECCG
T ss_pred             CCCCCeeEEE--------CCCCEEEEEECCCCCEEEEECCcC
Confidence            9999999995        459999999999999999998874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.7e-24  Score=180.63  Aligned_cols=185  Identities=18%  Similarity=0.230  Sum_probs=129.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeC---------------------
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF---------------------  146 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~---------------------  146 (297)
                      ..+++.|++|++ +........... ..+...+....++++++++++++.|+.|++||+                     
T Consensus        67 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d1nexb2          67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  146 (355)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESC
T ss_pred             EEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceec
Confidence            456778888888 666665554443 122333344555666666666666666666664                     


Q ss_pred             ------------------------------------------CCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEE
Q psy3337         147 ------------------------------------------PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF  184 (297)
Q Consensus       147 ------------------------------------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~  184 (297)
                                                                .+++.+..+.++...+.++.|+|++.++++++.|+.|+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  226 (355)
T d1nexb2         147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR  226 (355)
T ss_dssp             TTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEE
Confidence                                                      33333444455667788999999999999999999999


Q ss_pred             EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeE
Q psy3337         185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLS  264 (297)
Q Consensus       185 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~  264 (297)
                      +||++++..+..+..|...          +..++++  +++|++        |+.|+.|++||+.++.............
T Consensus       227 i~d~~~~~~~~~~~~h~~~----------v~~~~~~--~~~l~~--------~~~dg~i~iwd~~~~~~~~~~~~~~~~~  286 (355)
T d1nexb2         227 IWDLENGELMYTLQGHTAL----------VGLLRLS--DKFLVS--------AAADGSIRGWDANDYSRKFSYHHTNLSA  286 (355)
T ss_dssp             EEETTTCCEEEEECCCSSC----------CCEEEEC--SSEEEE--------ECTTSEEEEEETTTCCEEEEEECTTCCC
T ss_pred             eeecccccccccccccccc----------ccccccc--cceeee--------eecccccccccccccceecccccCCceE
Confidence            9999999999988877532          2234454  456777        5559999999999876654443322233


Q ss_pred             EEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         265 ALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       265 ~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ...+++++.+|++|+  ||.|+|||+++++++
T Consensus       287 ~~~~~~~~~~l~~g~--d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         287 ITTFYVSDNILVSGS--ENQFNIYNLRSGKLV  316 (355)
T ss_dssp             CCEEEECSSEEEEEE--TTEEEEEETTTCCBC
T ss_pred             EEEEcCCCCEEEEEe--CCEEEEEECCCCCEE
Confidence            345677888777765  899999999999876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-23  Score=171.94  Aligned_cols=179  Identities=11%  Similarity=0.099  Sum_probs=130.4

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC-cEEEEeCCCCeeeEEec-cccCCeeEEEEccCCC
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG-HLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGE  172 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~-~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~  172 (297)
                      ++.+.+ +..+++.+..+. . ...  ..+++|+++.+++++.++ .|++|++...+....+. .|...+++++|+|++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  175 (287)
T d1pgua2         100 DDDLLILQSFTGDIIKSVR-L-NSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET  175 (287)
T ss_dssp             TSEEEEEETTTCCEEEEEE-C-SSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS
T ss_pred             cccceeeeccceeeeeecc-c-cce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc
Confidence            344555 777777777765 3 333  456778888888877765 79999998766555544 4778899999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeee-eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEecc--CcccccCCCCeEEEEeCC
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKE-LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN--PLAQNKRGISYVQQWDVD  249 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~~~~~g~~d~~i~~wd~~  249 (297)
                      +|++++.|+.|++||+.++..... +..|.          ..+..++|+|.+........  .++++|+.|+.|++||++
T Consensus       176 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~----------~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         176 YIAAGDVMGKILLYDLQSREVKTSRWAFRT----------SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEECCSCCCS----------SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ccccccccccccceeecccccccccccccc----------cccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            999999999999999998876543 34443          12334666766543333222  234457779999999997


Q ss_pred             C-CceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         250 S-GRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       250 ~-~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      . ++.+..+.+|.. |++++|+|++ .|++++. |+.|++|++
T Consensus       246 ~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~-D~~v~iW~i  286 (287)
T d1pgua2         246 RPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA-DACIKRWNV  286 (287)
T ss_dssp             CTTCCEEETTSSTTCEEEEEEEETT-EEEEEET-TSCEEEEEE
T ss_pred             CCCeEEEEeCCCCCCeEEEEECCCC-EEEEEEC-CCeEEEEEE
Confidence            7 667777788877 9999999986 5888888 999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4e-24  Score=178.31  Aligned_cols=176  Identities=14%  Similarity=0.176  Sum_probs=142.2

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      ...+..|+.+++ +..+++.+.... ++...+.++.|+|+++++++++.|+.|++||++++..+..+.+|...|.+++|+
T Consensus       174 ~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~  252 (355)
T d1nexb2         174 VVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS  252 (355)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC
T ss_pred             eeeecccceeeeeecccccceeeee-ccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc
Confidence            346777889999 888888888887 888999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeC
Q psy3337         169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDV  248 (297)
Q Consensus       169 p~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~  248 (297)
                      +  ++|++++.||.|++||++++......  |......         ...+++++.++++. .        |+.|++||+
T Consensus       253 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~---------~~~~~~~~~~l~~g-~--------d~~i~vwd~  310 (355)
T d1nexb2         253 D--KFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSA---------ITTFYVSDNILVSG-S--------ENQFNIYNL  310 (355)
T ss_dssp             S--SEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCC---------CCEEEECSSEEEEE-E--------TTEEEEEET
T ss_pred             c--ceeeeeecccccccccccccceeccc--ccCCceE---------EEEEcCCCCEEEEE-e--------CCEEEEEEC
Confidence            5  69999999999999999877654333  3221101         12356677766552 2        789999999


Q ss_pred             CCCceEE-EeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         249 DSGRLRL-AREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       249 ~~~~~~~-~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                      ++++++. .+.+|.. |.+++|+|+ ..+++++. ||+++||.+
T Consensus       311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~-dg~~~l~~~  352 (355)
T d1nexb2         311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEK-DGQSFLEIL  352 (355)
T ss_dssp             TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEES-SSCEEEEEE
T ss_pred             CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEEC-CCcEEEEEE
Confidence            9999875 4556665 999999986 57788888 998766644

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.6e-23  Score=170.38  Aligned_cols=177  Identities=20%  Similarity=0.303  Sum_probs=137.9

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      .+..|+.+.+ +..+++....+. .+...  ...+.+....+++++.|+.|++||....+.+..+.+|...+..+.+  +
T Consensus       112 ~~~~d~~i~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~  186 (342)
T d2ovrb2         112 SGSRDATLRVWDIETGQCLHVLM-GHVAA--VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D  186 (342)
T ss_dssp             EEETTSEEEEEESSSCCEEEEEE-CCSSC--EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C
T ss_pred             ccccceeEEEeecccccceeeee-ccccc--ceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--C
Confidence            4666788888 888887777765 44443  3345566778999999999999999999999999999877666555  6


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         171 GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       171 ~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      +.+|++++.|+.|++||++.++.+..+..|...    .      ..+  ++++.+|++        |+.|+.|++||+..
T Consensus       187 ~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~----v------~~~--~~~~~~l~s--------~s~d~~i~iwd~~~  246 (342)
T d2ovrb2         187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL----T------SGM--ELKDNILVS--------GNADSTVKIWDIKT  246 (342)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCCSC----E------EEE--EEETTEEEE--------EETTSCEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEeecccceeeeEecccccc----e------eEE--ecCCCEEEE--------EcCCCEEEEEeccc
Confidence            789999999999999999999998888777532    1      113  334567877        45599999999999


Q ss_pred             CceEEEeccCC---C-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         251 GRLRLAREMKE---S-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       251 ~~~~~~~~~~~---~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+....+..+.   . +.++.+  ++.++++|+. ||.|++||+++++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~-Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         247 GQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSD-DGTVKLWDLKTGEFI  293 (342)
T ss_dssp             CCEEEEECSTTSCSSCEEEEEE--CSSEEEEEET-TSEEEEEETTTCCEE
T ss_pred             ccccccccccceeeeceeeccc--CCCeeEEEcC-CCEEEEEECCCCCEE
Confidence            88887776542   2 555555  5679999999 999999999998865

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.4e-23  Score=172.22  Aligned_cols=220  Identities=8%  Similarity=-0.037  Sum_probs=140.3

Q ss_pred             cceeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCC
Q psy3337           2 NCDVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKD   81 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
                      ++..|++++++||+|+.|+.|+||++......                                                
T Consensus        15 ~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~------------------------------------------------   46 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------------------------------------------   46 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------------------------------------------
T ss_pred             EEEEEeCCCCEEEEEECCCeEEEEEccCCCcc------------------------------------------------
Confidence            56679999999999999999999988542110                                                


Q ss_pred             CCCCCCCcCCCCCCCceEEEEeeCCCeEEEEecCCCCcEEEEEEecCC-CEEEEEcCCCcEEEEeCCCCeeeEEeccccC
Q psy3337          82 KIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        82 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                                               ..+.... +|...|.+++|+|++ .+|++|+.|+.|++|++...........+..
T Consensus        47 -------------------------~~~~~~~-~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~  100 (342)
T d1yfqa_          47 -------------------------VDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA  100 (342)
T ss_dssp             -------------------------EEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC
T ss_pred             -------------------------eEEEEec-CCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccc
Confidence                                     0122333 799999999999975 6899999999999999988776666655444


Q ss_pred             C-eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec----cCCC--CceEEEEeeeeeeeeeCCCCe---------
Q psy3337         161 E-IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW----NTPD--NIKYLFKRCRYGLVEDSPKRS---------  224 (297)
Q Consensus       161 ~-v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~s~~~~---------  224 (297)
                      . .....+.++...+++++.|+++++||++.+........    +...  ...+.+....-..+..+.++.         
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         101 NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred             ccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccC
Confidence            3 44555677888999999999999999865432222211    1100  000000000000000000000         


Q ss_pred             ---------------EEEEec----cCcccccCCCCeEEEEeCCCCce---------EEEe------ccCCC-eEEEEEc
Q psy3337         225 ---------------RLFTLA----NPLAQNKRGISYVQQWDVDSGRL---------RLAR------EMKES-LSALAVR  269 (297)
Q Consensus       225 ---------------~l~~~~----~~~~~~g~~d~~i~~wd~~~~~~---------~~~~------~~~~~-v~~~~~s  269 (297)
                                     ......    ...++.++.|+.+.+|++.....         ....      ..+.. +.+++|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  260 (342)
T d1yfqa_         181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred             cccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEec
Confidence                           000000    01345566788888887754211         1111      12222 8899999


Q ss_pred             CCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         270 DDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       270 ~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      |++++|++|+. ||.|++||+.+++++
T Consensus       261 p~~~~lasg~~-Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         261 PRHKFLYTAGS-DGIISCWNLQTRKKI  286 (342)
T ss_dssp             TTTCCEEEEET-TSCEEEEETTTTEEE
T ss_pred             CCccEEEEECC-CCEEEEEECCCCcEE
Confidence            99999999999 999999999998765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=1.7e-22  Score=169.43  Aligned_cols=193  Identities=13%  Similarity=0.126  Sum_probs=136.5

Q ss_pred             ceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEE
Q psy3337          97 KNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIV  175 (297)
Q Consensus        97 ~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  175 (297)
                      ..|++ +..+++.. .+. .|...|.+++|+|+|++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+
T Consensus        66 ~~v~v~d~~~~~~~-~~~-~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          66 DFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA  143 (360)
T ss_dssp             EEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             CEEEEEECCCCcEE-Eee-CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeee
Confidence            46788 77776654 555 8999999999999999999999999999999999998888999999999999999999998


Q ss_pred             EEe----------CCCcEEEEEcCCCceeeeeeccC--------CCCceEEEEeee--------------------ee--
Q psy3337         176 SIA----------KDGKAFVWNSKNGSLSKELKWNT--------PDNIKYLFKRCR--------------------YG--  215 (297)
Q Consensus       176 s~~----------~d~~v~lwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------------------~~--  215 (297)
                      .+.          .++.+++||+.+++.........        |++..+.+....                    ..  
T Consensus       144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~  223 (360)
T d1k32a3         144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  223 (360)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             eeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEE
Confidence            653          34568999998775543322111        222111111000                    00  


Q ss_pred             --------eeeeCCCCe------------------------------------EEEEecc-----CcccccCCCCeEEEE
Q psy3337         216 --------LVEDSPKRS------------------------------------RLFTLAN-----PLAQNKRGISYVQQW  246 (297)
Q Consensus       216 --------~~~~s~~~~------------------------------------~l~~~~~-----~~~~~g~~d~~i~~w  246 (297)
                              .+.+++++.                                    ..+....     ..+++++.++.|++|
T Consensus       224 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  303 (360)
T d1k32a3         224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  303 (360)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             ecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEE
Confidence                    011111111                                    1111100     045667788999999


Q ss_pred             eCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         247 DVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       247 d~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      |+.+++.... .  ..|.+++|||||++|++++. ||.|++||+.+++.
T Consensus       304 d~~~~~~~~~-~--~~v~~~~~SpDG~~l~~~~~-Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         304 DVKTRKVTEV-K--NNLTDLRLSADRKTVMVRKD-DGKIYTFPLEKPED  348 (360)
T ss_dssp             ETTTCCEEEE-E--EEEEEEEECTTSCEEEEEET-TSCEEEEESSCTTS
T ss_pred             ECCCCeEEEe-c--CCcCEEEECCCCCEEEEEEC-CCeEEEEECCCCCc
Confidence            9998765432 2  23899999999999999999 99999999988753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.6e-22  Score=159.90  Aligned_cols=172  Identities=13%  Similarity=0.218  Sum_probs=135.9

Q ss_pred             CCCCCCceEEE-EeeCCCeEEE--EecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEE
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQT--VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF  167 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~--~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  167 (297)
                      .++..++.+.+ +..+......  ....|...|.++.+.+  ..+++++.|+.|++||+++++.+..+.++...+..+.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  186 (293)
T d1p22a2         109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY  186 (293)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             eecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccC
Confidence            35667788888 7665543222  2237888888777764  47889999999999999999999999999999988887


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       168 sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      +  +.++++++.|++|++||+++...+..+..+...    .        ..+++++.+|++        |+.|+.|++||
T Consensus       187 ~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v--------~~~~~~~~~l~s--------g~~dg~i~iwd  244 (293)
T d1p22a2         187 R--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL----V--------RCIRFDNKRIVS--------GAYDGKIKVWD  244 (293)
T ss_dssp             E--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC----E--------EEEECCSSEEEE--------EETTSCEEEEE
T ss_pred             C--CCeEEEecCCCEEEEEecccceeeeeeccccee----e--------eeccccceEEEE--------EcCCCEEEEEE
Confidence            6  468999999999999999999888877665422    1        224677888888        45599999999


Q ss_pred             CCC---------CceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         248 VDS---------GRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       248 ~~~---------~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                      +..         ..++..+.+|.. |.+++|  ++.+|++++. ||+|+|||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~-Dg~i~iWD  293 (293)
T d1p22a2         245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWD  293 (293)
T ss_dssp             HHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC
T ss_pred             CCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEec-CCEEEEeC
Confidence            653         346778888877 999998  5678999999 99999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.6e-21  Score=163.33  Aligned_cols=184  Identities=10%  Similarity=-0.017  Sum_probs=150.2

Q ss_pred             CCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCC
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      .++.|++ +..++..++ +  +|...|.+++|+|||++|++++.+.  .|++||..+++. ..+..|...|.+++|+|++
T Consensus        22 ~~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg   97 (360)
T d1k32a3          22 SRGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNG   97 (360)
T ss_dssp             ETTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTS
T ss_pred             ECCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccc
Confidence            3568888 777766544 3  7999999999999999998776553  799999987765 4677899999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC--cccccCCCCeEEEEeCC
Q psy3337         172 EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP--LAQNKRGISYVQQWDVD  249 (297)
Q Consensus       172 ~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--~~~~g~~d~~i~~wd~~  249 (297)
                      ++|++++.++.+++|++.+++....+..+..          .+..++|+|+|++|+.....  ....+..++.+++||+.
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~  167 (360)
T d1k32a3          98 KFAVVANDRFEIMTVDLETGKPTVIERSREA----------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  167 (360)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSS----------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             cccceeccccccccccccccceeeeeecccc----------cccchhhccceeeeeeeccccccceeeccccceeeeccc
Confidence            9999999999999999999888777765542          12347789999999876432  34456778899999999


Q ss_pred             CCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         250 SGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +++..........+..++|+|||++|++++. ++.+.+||....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~-~~~~~~~d~~~~  210 (360)
T d1k32a3         168 GRKIFAATTENSHDYAPAFDADSKNLYYLSY-RSLDPSPDRVVL  210 (360)
T ss_dssp             TTEEEECSCSSSBEEEEEECTTSCEEEEEES-CCCCCEECSSSS
T ss_pred             cCceeeecccccccccccccCCCCEEEEEeC-CCceEccccccc
Confidence            8887776666666899999999999999999 999999997654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-20  Score=150.53  Aligned_cols=222  Identities=17%  Similarity=0.199  Sum_probs=159.4

Q ss_pred             eCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCCC
Q psy3337           7 SNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDP   86 (297)
Q Consensus         7 ~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (297)
                      +.+|++||+|+.|+.++||++........            .+++..                         +.......
T Consensus        22 ~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~------------l~~H~~-------------------------~V~~v~~~   64 (293)
T d1p22a2          22 QYDDQKIVSGLRDNTIKIWDKNTLECKRI------------LTGHTG-------------------------SVLCLQYD   64 (293)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCEEEE------------ECCCSS-------------------------CEEEEECC
T ss_pred             EEcCCEEEEEeCCCeEEEEECCCCcEEEE------------EecCCC-------------------------CEeeeecc
Confidence            34689999999999999999865332110            000000                         00000011


Q ss_pred             CCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCe---eeEEeccccCCe
Q psy3337          87 PILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMK---PLLHIEAHSKEI  162 (297)
Q Consensus        87 ~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v  162 (297)
                      +-+..+++.|+.+++ +...+....... .+...  ...+.+....++++..++.+.+|+.....   ....+..|...+
T Consensus        65 ~~~l~s~s~D~~i~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  141 (293)
T d1p22a2          65 ERVIITGSSDSTVRVWDVNTGEMLNTLI-HHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  141 (293)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCEEEEEC-CCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             cceeeccccccccccccccccccccccc-ccccc--cccccccccceeecccccceeEeecccccccccccccccccccc
Confidence            123567889999999 888887776665 44433  34455667789999999999999987654   345567788888


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCe
Q psy3337         163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY  242 (297)
Q Consensus       163 ~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~  242 (297)
                      ..+.+.+  ..+++++.|+.|++||+++++.+..+..+...    .        ..+.+++..+++        ++.|+.
T Consensus       142 ~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~----v--------~~~~~~~~~l~~--------~~~dg~  199 (293)
T d1p22a2         142 NVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG----I--------ACLQYRDRLVVS--------GSSDNT  199 (293)
T ss_dssp             EEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSC----E--------EEEEEETTEEEE--------EETTSC
T ss_pred             ccceecc--cccccccCCCceeeecCCCCcEEEEEcccccc----c--------ccccCCCCeEEE--------ecCCCE
Confidence            8888765  47889999999999999999988888766422    1        112334556777        445999


Q ss_pred             EEEEeCCCCceEEEeccCCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         243 VQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       243 i~~wd~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      |++||+++.+.+..+..+.. +..  +++++.+|++|+. ||.|++||+.+.
T Consensus       200 i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~-dg~i~iwd~~~~  248 (293)
T d1p22a2         200 IRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY-DGKIKVWDLVAA  248 (293)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET-TSCEEEEEHHHH
T ss_pred             EEEEecccceeeeeecccceeeee--ccccceEEEEEcC-CCEEEEEECCCC
Confidence            99999999999999888776 554  5678899999999 999999997653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.2e-19  Score=148.06  Aligned_cols=186  Identities=12%  Similarity=0.107  Sum_probs=145.4

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      .++..+..+.+ +..+++....+.  +.....++.|+|+++.++ ++..++.+.+|+..+...+..+..+ ..+..+.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  166 (301)
T d1l0qa2          90 VTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVT  166 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEEC
T ss_pred             ccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEee
Confidence            35566778888 888888777775  444568999999998764 6667888999999999888877644 458899999


Q ss_pred             cCCCEEEEEeCC-CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 ISGEQIVSIAKD-GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p~~~~l~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      |++..+++++.+ +.+.+|+.........+..+.           ....+++++++..++....     +..++.|++||
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~g~~~~v~~~-----~~~~~~v~v~D  230 (301)
T d1l0qa2         167 PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-----------APSGIAVNPEGTKAYVTNV-----DKYFNTVSMID  230 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-----------EEEEEEECTTSSEEEEEEE-----CSSCCEEEEEE
T ss_pred             ccccceeeecccccccccccccceeeeecccccC-----------Ccceeeccccccccccccc-----cceeeeeeeee
Confidence            999988887765 567777776666555554332           1123678999998887654     55678999999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEE-EEecCCCeEEEEEeCCceec
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVA-VGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +.+++.+..+..+..+.+++|+|||++|+ +++. ++.|++||+.+++.+
T Consensus       231 ~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~-~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         231 TGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-CNTVSVIDTATNTIT  279 (301)
T ss_dssp             TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEE
T ss_pred             cCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEE
Confidence            99999999888877799999999999874 6666 999999999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.1e-20  Score=161.63  Aligned_cols=198  Identities=9%  Similarity=-0.008  Sum_probs=151.1

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee--eEEe---ccccCCee
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP--LLHI---EAHSKEID  163 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~---~~~~~~v~  163 (297)
                      ..+.+.|++|.| |..+++.+..+. .+. .+..++|||||++|++++.|+.|++||+.+++.  +..+   ..|.+.+.
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~-~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLD-TGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEE-CSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEe-CCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            357888999999 999999999998 553 589999999999999999999999999987663  2232   35666777


Q ss_pred             EEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeccCCCCc-eEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCC
Q psy3337         164 DVDFSISGEQI-VSIAKDGKAFVWNSKNGSLSKELKWNTPDNI-KYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS  241 (297)
Q Consensus       164 ~~~~sp~~~~l-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~  241 (297)
                      ++.|+|||++| +++..+++|++||..+++.+..+..+..... .......+...+.++|++..++..       ...++
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs-------~~~~~  185 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN-------VKETG  185 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE-------ETTTT
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE-------EccCC
Confidence            78889999986 6778899999999999999888775542111 111122233446789998876653       33589


Q ss_pred             eEEEEeCCCCceEE--EeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         242 YVQQWDVDSGRLRL--AREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       242 ~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .|.+||..+++...  .+.....+..++|+|||+++++++..++.+.++|..+++.+
T Consensus       186 ~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            99999998876544  34444458999999999998888763668999998877653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=7e-21  Score=164.32  Aligned_cols=204  Identities=9%  Similarity=0.005  Sum_probs=151.0

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeE--Ee---ccccCCee
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL--HI---EAHSKEID  163 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~--~~---~~~~~~v~  163 (297)
                      ..+.+.|++|++ |..+++.+.++. .|. .+..++|||||++|++++.|++|++||+.+++...  .+   .+|...+.
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~l~-~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKVID-TGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEEEE-CCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEe-CCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            357888999999 999999999998 554 48999999999999999999999999999887433  22   35667778


Q ss_pred             EEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeccC--------------------CCCceEEEE------------
Q psy3337         164 DVDFSISGEQIVSI-AKDGKAFVWNSKNGSLSKELKWNT--------------------PDNIKYLFK------------  210 (297)
Q Consensus       164 ~~~~sp~~~~l~s~-~~d~~v~lwd~~~~~~~~~~~~~~--------------------~~~~~~~~~------------  210 (297)
                      +++|+|||++++++ ..++.+.+||..++..+..+..+.                    ++...+.+.            
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            88899999987555 578999999998887665543221                    111000000            


Q ss_pred             -------------eeeeeeeeeCCCCeEEEEeccC----------------------------------------ccccc
Q psy3337         211 -------------RCRYGLVEDSPKRSRLFTLANP----------------------------------------LAQNK  237 (297)
Q Consensus       211 -------------~~~~~~~~~s~~~~~l~~~~~~----------------------------------------~~~~g  237 (297)
                                   ......+.++|++++++.....                                        .....
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence                         0112357889999887776431                                        11234


Q ss_pred             CCCCeEEEEeCCC-------CceEEEeccCCC-eEEEEEcCCCCEEEE-------EecCCCeEEEEEeCCceec
Q psy3337         238 RGISYVQQWDVDS-------GRLRLAREMKES-LSALAVRDDGRFVAV-------GTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       238 ~~d~~i~~wd~~~-------~~~~~~~~~~~~-v~~~~~s~dg~~l~~-------~~~~dg~i~vwd~~~~~~~  296 (297)
                      +.++.+.+|+...       ++....+.+|.. +..++|+|||++|++       +.. +++|+|||+.+++.+
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~-~~tv~vwd~~t~~~~  345 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI-SQSVAVFDLKNLDAK  345 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHH-HTCEEEEETTCTTSC
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCccc-CCEEEEEECCCCCcC
Confidence            4577888887654       367778888877 999999999999995       556 889999999988653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.8e-19  Score=149.18  Aligned_cols=240  Identities=14%  Similarity=0.148  Sum_probs=166.7

Q ss_pred             CccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCCCCCCCc
Q psy3337          10 KNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPIL   89 (297)
Q Consensus        10 ~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   89 (297)
                      ++||++++.|+.++||++..............+..                               ... .....+...+
T Consensus         1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~-------------------------------~~~-i~~spDg~~l   48 (337)
T d1pbyb_           1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPT-------------------------------PMV-PMVAPGGRIA   48 (337)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTC-------------------------------CCC-EEECTTSSEE
T ss_pred             CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCC-------------------------------ccE-EEECCCCCEE
Confidence            46899999999999999976543321111000000                               000 0011122223


Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCC-----CcEEEEEEecCCCEEEEEc------------CCCcEEEEeCCCCee
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSE-----SLQRVVRLSRNGDLMVTGG------------TDGHLRLWSFPKMKP  151 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~-----~~v~~~~~s~~g~~l~s~~------------~d~~i~iwd~~~~~~  151 (297)
                      ..+++.++.|.+ |+.+++.+..+. .+.     ..+..++|+|++++++++.            .+..+.+||..+++.
T Consensus        49 ~v~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (337)
T d1pbyb_          49 YATVNKSESLVKIDLVTGETLGRID-LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR  127 (337)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEE-CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEe-cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence            346777899999 999999988887 433     2345789999999988775            467899999999998


Q ss_pred             eEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC--------CCCc----------eEEE--E-
Q psy3337         152 LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT--------PDNI----------KYLF--K-  210 (297)
Q Consensus       152 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~--------~~~~----------~~~~--~-  210 (297)
                      ...+.. ...+..++|+|+++++++++.+  +.+||..+++....+..+.        +.+.          ....  . 
T Consensus       128 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (337)
T d1pbyb_         128 RKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             EEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             EEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeee
Confidence            888774 4568899999999999998654  7789998887665543321        0000          0000  0 


Q ss_pred             -----------------------------------eeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEE
Q psy3337         211 -----------------------------------RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRL  255 (297)
Q Consensus       211 -----------------------------------~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~  255 (297)
                                                         ......+.++|++.+++..          ++.|++||+.+++.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~v~d~~~~~~~~  274 (337)
T d1pbyb_         205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA----------YNVLESFDLEKNASIK  274 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE----------ESEEEEEETTTTEEEE
T ss_pred             eeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc----------cccEEEEECCCCcEEE
Confidence                                               0011124455666655542          5789999999999999


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         256 AREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       256 ~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+.....+.+++|+|||++|++++. ++.|+|||+.+++.+
T Consensus       275 ~~~~~~~~~~~~~s~dG~~l~v~~~-~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         275 RVPLPHSYYSVNVSTDGSTVWLGGA-LGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEECSSCCCEEEECTTSCEEEEESB-SSEEEEEETTTCCEE
T ss_pred             EEcCCCCEEEEEECCCCCEEEEEeC-CCcEEEEECCCCcEE
Confidence            8887666999999999999999999 999999999998875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.7e-20  Score=153.63  Aligned_cols=168  Identities=12%  Similarity=0.015  Sum_probs=124.5

Q ss_pred             EEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee---eEEeccccCCeeEEEEccC-CCEEEEEeCCCcEE
Q psy3337         109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP---LLHIEAHSKEIDDVDFSIS-GEQIVSIAKDGKAF  184 (297)
Q Consensus       109 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~-~~~l~s~~~d~~v~  184 (297)
                      ++... +|.+.|++|+|+|++++|++|+.|++|+|||++++..   +....+|..+|.+++|+|+ +.+|++|+.|+.|+
T Consensus         4 v~~~~-~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           4 VQIEQ-APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSS-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             EEcCC-CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            44444 9999999999999999999999999999999976543   2333469999999999986 45899999999999


Q ss_pred             EEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce----EEEeccC
Q psy3337         185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL----RLAREMK  260 (297)
Q Consensus       185 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~----~~~~~~~  260 (297)
                      +|++..+........+......         ...+.++...+++.+        .++.+++||++.+..    ......+
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--------~~~~~~~wd~~~~~~~~~~~~~~~~~  145 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGI---------CRICKYGDDKLIAAS--------WDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCE---------EEEEEETTTEEEEEE--------TTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             eeeccccccccccccccccccc---------ccccccccccccccc--------cccccceeeccccccceeeecccccc
Confidence            9999877666555444322111         122355666677744        499999999876332    2222222


Q ss_pred             C---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         261 E---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       261 ~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      .   ....+.+.+++..+++++. |+.|++||+.+.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         146 NTKVKNKIFTMDTNSSRLIVGMN-NSQVQWFRLPLCED  182 (342)
T ss_dssp             SSSSCCCEEEEEECSSEEEEEES-TTEEEEEESSCCTT
T ss_pred             cccceeeeeeeeccCCceeeecC-CCcEEEEecccCcc
Confidence            1   1566778889999999999 99999999876553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.8e-20  Score=150.68  Aligned_cols=169  Identities=17%  Similarity=0.207  Sum_probs=120.2

Q ss_pred             CeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEE
Q psy3337         107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW  186 (297)
Q Consensus       107 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lw  186 (297)
                      ++++++. ||...|++++|+|    |++|+.||+|++||+.++     ...|...|.+++|+++. .+++++.|+++++|
T Consensus         4 ~~i~~l~-gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           4 EVLKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEC-CCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             ceeEEEC-CCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            5678888 9999999999987    999999999999998754     35799999999998764 67899999999999


Q ss_pred             EcCCCce---eeeeeccCCCCceEEEE-------------------eeeeeeeeeCCCCeEEEEeccCcccccCCCCeEE
Q psy3337         187 NSKNGSL---SKELKWNTPDNIKYLFK-------------------RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ  244 (297)
Q Consensus       187 d~~~~~~---~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~  244 (297)
                      ++...+.   ...+..+. .+......                   .......++++++..+++.       +..++.++
T Consensus        73 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------~~~~~~v~  144 (287)
T d1pgua2          73 GITKHEFGSQPKVASANN-DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG-------LEEGNTIQ  144 (287)
T ss_dssp             TEEEEECSSCEEEEEECS-SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEE-------ETTTSCEE
T ss_pred             cccccccccceeeeeecc-CCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeee-------ccccceee
Confidence            8753221   11111111 11000000                   0001123445555555543       33456899


Q ss_pred             EEeCCCCceEEEecc-CCC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         245 QWDVDSGRLRLAREM-KES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~-~~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +|++...+....+.. +.. +++++|+|++.+|++|+. ||.|++||+.+++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~  196 (287)
T d1pgua2         145 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQSREV  196 (287)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEE
T ss_pred             eeeccccceeeeeeeccCCceeEEEeccCccccccccc-cccccceeeccccc
Confidence            999987666555543 333 999999999999999999 99999999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=3.9e-18  Score=141.49  Aligned_cols=197  Identities=14%  Similarity=0.142  Sum_probs=136.5

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEecccc------CC
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHS------KE  161 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~  161 (297)
                      ..+++.|++|.+ |+.+++.+.++...|...+.+++|+|||+++ +++..++.|++||+.+++.+..+....      ..
T Consensus        11 l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~   90 (346)
T d1jmxb_          11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS   90 (346)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCc
Confidence            446788899999 9999999988874556667899999999876 566789999999999998877664322      34


Q ss_pred             eeEEEEccCCCEEEEEe------------CCCcEEEEEcCCCceeeeeeccC-----------CCCceEEEEe-------
Q psy3337         162 IDDVDFSISGEQIVSIA------------KDGKAFVWNSKNGSLSKELKWNT-----------PDNIKYLFKR-------  211 (297)
Q Consensus       162 v~~~~~sp~~~~l~s~~------------~d~~v~lwd~~~~~~~~~~~~~~-----------~~~~~~~~~~-------  211 (297)
                      +..++|+|||+++++++            .+..+.+||..+++....+..+.           +++..+....       
T Consensus        91 ~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (346)
T d1jmxb_          91 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV  170 (346)
T ss_dssp             SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECT
T ss_pred             eEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEc
Confidence            67899999999887664            35667777766544322211100           0000000000       


Q ss_pred             --------e-----------------------------------------------------------------------
Q psy3337         212 --------C-----------------------------------------------------------------------  212 (297)
Q Consensus       212 --------~-----------------------------------------------------------------------  212 (297)
                              .                                                                       
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (346)
T d1jmxb_         171 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL  250 (346)
T ss_dssp             TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecc
Confidence                    0                                                                       


Q ss_pred             --eeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         213 --RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       213 --~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                        .+..+.+++++.+++..         .++.|.+||+.+++.+..+.....+.+++|+|||++|++++. |+.|++||+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~---------~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~-d~~v~v~D~  320 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYG---------VLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT-FNDLAVFNP  320 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEE---------EESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB-SSEEEEEET
T ss_pred             cceeEEEEEeCCCCEEEEe---------cCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Confidence              00011122222222221         135799999999999988876666999999999999999999 999999999


Q ss_pred             CCceec
Q psy3337         291 FSLQMC  296 (297)
Q Consensus       291 ~~~~~~  296 (297)
                      .+++.+
T Consensus       321 ~t~~~i  326 (346)
T d1jmxb_         321 DTLEKV  326 (346)
T ss_dssp             TTTEEE
T ss_pred             ccCCEE
Confidence            999876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=2.1e-17  Score=142.20  Aligned_cols=261  Identities=14%  Similarity=0.080  Sum_probs=160.0

Q ss_pred             eeeeCCCccEEEeccCCceeeEEEeeEEeeccccccccCCCCchhhhhhcccccchhhhhccCCCcccccccCCCCCCCC
Q psy3337           4 DVHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKI   83 (297)
Q Consensus         4 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
                      ..|+++|++|++++.|+.+++|++.........+.....       ++..-.                      ......
T Consensus        67 vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~-------~~~~~~----------------------~s~~~s  117 (426)
T d1hzua2          67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI-------EARSVE----------------------SSKFKG  117 (426)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS-------EEEEEE----------------------ECCSTT
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC-------CCcceE----------------------Eeeeec
Confidence            459999999999999999999998654321111110000       000000                      000111


Q ss_pred             CCCCCcCCCCCCCceEEE-EeeCCCeEEEEecCCCCc-----------EEEEEEecCCCEEEEE-cCCCcEEEEeCCCCe
Q psy3337          84 EDPPILNSIDSKEKNLRF-GFKTFDSVQTVFAGSESL-----------QRVVRLSRNGDLMVTG-GTDGHLRLWSFPKMK  150 (297)
Q Consensus        84 ~~~~~l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~-----------v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~~  150 (297)
                      .+...+..++..++++++ +..++..+..+. +|...           ...+.+++++..++.. ...+.+.+++.....
T Consensus       118 pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~  196 (426)
T d1hzua2         118 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  196 (426)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred             CCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence            122223456667889999 899988887776 54433           3455556665544433 333455555554443


Q ss_pred             e-eEEeccccCCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeccC------------------------CCC
Q psy3337         151 P-LLHIEAHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLSKELKWNT------------------------PDN  204 (297)
Q Consensus       151 ~-~~~~~~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~------------------------~~~  204 (297)
                      . ......+...+..+.|+|++++++++. .+..+.+|+..+++.+.......                        +++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  276 (426)
T d1hzua2         197 NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDG  276 (426)
T ss_dssp             SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTC
T ss_pred             ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCc
Confidence            2 223345777899999999999888776 45678899998877665443211                        000


Q ss_pred             ceEEEE--------------------eeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe-------
Q psy3337         205 IKYLFK--------------------RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR-------  257 (297)
Q Consensus       205 ~~~~~~--------------------~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~-------  257 (297)
                      ......                    ......++|+|++++|++... +..+++.+++|++||+.+++....+       
T Consensus       277 ~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~-~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~  355 (426)
T d1hzua2         277 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT-FNPDARISQSVAVFDLKNLDAKYQVLPIAEWA  355 (426)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCT-TCSSHHHHTCEEEEETTCTTSCCEEECHHHHH
T ss_pred             eEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeec-CCCCcccCCEEEEEECCCCCcCeEEeccchhc
Confidence            000000                    112345889999999986321 2223556889999999998765443       


Q ss_pred             ---ccCCCeEEEEEcCCCCEEEEE-----ecCCCeEEEEEeCCceec
Q psy3337         258 ---EMKESLSALAVRDDGRFVAVG-----TMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       258 ---~~~~~v~~~~~s~dg~~l~~~-----~~~dg~i~vwd~~~~~~~  296 (297)
                         .+...|.+++|||||++|+.+     +. +|.|+|||..+++.+
T Consensus       356 ~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~-~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKND-SSALVVVDDKTLKLK  401 (426)
T ss_dssp             CCCSSCCCEEEEEECSSSSEEEEEECCCTTS-CCEEEEEETTTTEEE
T ss_pred             ccCCCCccEEEEEECCCCCEEEEEEecCCCC-CCeEEEEECCCCeEE
Confidence               122338999999999987543     35 889999999998854

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.76  E-value=3.9e-16  Score=126.85  Aligned_cols=183  Identities=16%  Similarity=0.114  Sum_probs=147.4

Q ss_pred             CCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc
Q psy3337          91 SIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS  168 (297)
Q Consensus        91 ~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  168 (297)
                      .+++.|++|.+ |+.+++.+.++. . ...+..++|+|||++| ++++.++.|++||+.+++.+..+..+. .+..+.|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~-~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIP-V-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEE-C-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccc
Confidence            35677889999 999999998886 2 2446799999999977 577789999999999999999888765 47899999


Q ss_pred             cCCCEEEE-EeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         169 ISGEQIVS-IAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       169 p~~~~l~s-~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      +++..++. +..++.+.+|+..+++....+..+..           ...+.++|++..++..       +..+..+.+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~dg~~~~~~-------~~~~~~~~~~~  144 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-----------PLGLALSPDGKKLYVT-------NNGDKTVSVIN  144 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-----------EEEEEECTTSSEEEEE-------ETTTTEEEEEE
T ss_pred             cccccccccccccceeeecccccceeeeecccccc-----------ceEEEeecCCCeeeee-------eccccceeeee
Confidence            99986654 55678899999999888777765431           1236689999988764       34588999999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ..+++.+..+..+..+..+.++|++..++++...++.+.+|+....+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (301)
T d1l0qa2         145 TVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (301)
T ss_dssp             TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccceeeecccCCCceEEEeeccccceeeeccccccccccccccee
Confidence            99999999888888899999999999988887625677777766554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.3e-16  Score=131.72  Aligned_cols=159  Identities=16%  Similarity=0.069  Sum_probs=126.5

Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeeEEeccc--cCCeeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeeccCCCCce
Q psy3337         130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAH--SKEIDDVDFSISGEQIV-SIAKDGKAFVWNSKNGSLSKELKWNTPDNIK  206 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~  206 (297)
                      ++|++++.|++|++||+.+++.+..+..+  ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence            47999999999999999999998888643  45678999999999875 56789999999999999988877654321  


Q ss_pred             EEEEeeeeeeeeeCCCCeEEEEeccC----cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC
Q psy3337         207 YLFKRCRYGLVEDSPKRSRLFTLANP----LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT  282 (297)
Q Consensus       207 ~~~~~~~~~~~~~s~~~~~l~~~~~~----~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d  282 (297)
                         .......++++|++++++.....    .......+..+.+||..+++.+..+..+..+..++|+|||+++++++. +
T Consensus        80 ---~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~  155 (337)
T d1pbyb_          80 ---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR-D  155 (337)
T ss_dssp             ---EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS-S
T ss_pred             ---cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC-C
Confidence               11223358899999999887652    122233578999999999999999888777999999999999998875 4


Q ss_pred             CeEEEEEeCCceec
Q psy3337         283 GSVFVYIAFSLQMC  296 (297)
Q Consensus       283 g~i~vwd~~~~~~~  296 (297)
                        +.+||+.+++.+
T Consensus       156 --~~~~d~~~~~~~  167 (337)
T d1pbyb_         156 --LHVMDPEAGTLV  167 (337)
T ss_dssp             --EEEEETTTTEEE
T ss_pred             --cceeeeecCcEE
Confidence              678998887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.6e-16  Score=129.69  Aligned_cols=201  Identities=12%  Similarity=0.066  Sum_probs=132.8

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEE----------cCCCcEEEEeCCCCeeeEEecccc--
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG----------GTDGHLRLWSFPKMKPLLHIEAHS--  159 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~--  159 (297)
                      +..+.++.+ |..+++.+.++. .+...  .++|||||++|++.          ..|+.|++||+.+++.+..+..+.  
T Consensus        24 ~~~~~~v~v~D~~tg~~~~~~~-~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~  100 (355)
T d2bbkh_          24 FAAVTQQFVIDGEAGRVIGMID-GGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP  100 (355)
T ss_dssp             GCSSEEEEEEETTTTEEEEEEE-ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CCCcCeEEEEECCCCcEEEEEE-CCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence            345677888 999999998887 44444  79999999988754          347899999999999887765432  


Q ss_pred             -----CCeeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeccC----------------CCCceEEEEee----
Q psy3337         160 -----KEIDDVDFSISGEQIVSIA--KDGKAFVWNSKNGSLSKELKWNT----------------PDNIKYLFKRC----  212 (297)
Q Consensus       160 -----~~v~~~~~sp~~~~l~s~~--~d~~v~lwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~----  212 (297)
                           .....++|+|++++++.+.  .+..+.+||..+++.+..+..+.                +++....+...    
T Consensus       101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~  180 (355)
T d2bbkh_         101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  180 (355)
T ss_dssp             CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe
Confidence                 2345789999999888765  45789999998887665544221                01100000000    


Q ss_pred             ---------------eee------------------------------------------------------eeeeCCCC
Q psy3337         213 ---------------RYG------------------------------------------------------LVEDSPKR  223 (297)
Q Consensus       213 ---------------~~~------------------------------------------------------~~~~s~~~  223 (297)
                                     .+.                                                      .+++++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~  260 (355)
T d2bbkh_         181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  260 (355)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC
Confidence                           000                                                      02222333


Q ss_pred             eEEEEeccC--cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC--EEEEEecCCCeEEEEEeCCceecC
Q psy3337         224 SRLFTLANP--LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR--FVAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       224 ~~l~~~~~~--~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      ..++.....  ..+.......|.+||..+++.+..+.....+.+++|+|||+  +++++.. |+.|++||+++++.++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~-d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG-DKTLYIHDAESGEELR  337 (355)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-TTEEEEEETTTCCEEE
T ss_pred             CeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECC-CCEEEEEECCCCCEEE
Confidence            322222110  01111223578899999998888887666689999999998  3456666 9999999999998763

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3e-16  Score=135.19  Aligned_cols=151  Identities=13%  Similarity=0.021  Sum_probs=114.7

Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--eeeccCCCCceE
Q psy3337         130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK--ELKWNTPDNIKY  207 (297)
Q Consensus       130 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~--~~~~~~~~~~~~  207 (297)
                      -++++.+.|++|.|||..+++.+..+..+. .+..++|||||++|++++.|+++++||+.+++...  .+.... .....
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~-~~~~~  110 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSI  110 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC-CCCCe
Confidence            346899999999999999999999998774 69999999999999999999999999998876433  222110 00012


Q ss_pred             EEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC------------CCeEEEEEcCCCCEE
Q psy3337         208 LFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK------------ESLSALAVRDDGRFV  275 (297)
Q Consensus       208 ~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~------------~~v~~~~~s~dg~~l  275 (297)
                      .      ....|+|||++|++.       ++.++.|++||..+++++..+..+            .....+.++|+|..+
T Consensus       111 ~------~s~~~SpDG~~l~vs-------~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         111 E------TSKMEGWEDKYAIAG-------AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             E------ECCSTTCTTTEEEEE-------EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             E------EecccCCCCCEEEEE-------cCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence            2      235689999987653       335899999999999988776543            226688999999876


Q ss_pred             EEEecCCCeEEEEEeCCcee
Q psy3337         276 AVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +.....++.|.+||..+++.
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSE
T ss_pred             EEEEccCCeEEEEEccCCCc
Confidence            55443389999999877653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.3e-15  Score=125.67  Aligned_cols=103  Identities=7%  Similarity=0.049  Sum_probs=74.8

Q ss_pred             CCCCCCCceEEE-EeeCCCeEEEEe-cCCCCcEEEEEEecCCCEEE-EEcCCCcEEEEeCCCCeeeEEe---ccccCCee
Q psy3337          90 NSIDSKEKNLRF-GFKTFDSVQTVF-AGSESLQRVVRLSRNGDLMV-TGGTDGHLRLWSFPKMKPLLHI---EAHSKEID  163 (297)
Q Consensus        90 ~~~~~~d~~i~~-~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~  163 (297)
                      ..+++.|++|++ ++.+...+..+. ..|.+.+..++|+|||++|+ ++..|+.|++|++........+   ..+...+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            346778999999 776544333222 26788899999999999885 4556899999999765433222   22445678


Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEEcCCCc
Q psy3337         164 DVDFSISGEQIVSIAK-DGKAFVWNSKNGS  192 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~-d~~v~lwd~~~~~  192 (297)
                      .++|+|||++|++++. ++.+.+|+.....
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             EEEEcCCCCEEeecccCCCceeeecccccc
Confidence            8999999999998875 6788888875443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.68  E-value=2.2e-14  Score=120.25  Aligned_cols=178  Identities=12%  Similarity=0.012  Sum_probs=122.7

Q ss_pred             CcEEEEEEecCCCE-EEEEcCCCcEEEEeCCCCeeeEEeccc------cCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy3337         118 SLQRVVRLSRNGDL-MVTGGTDGHLRLWSFPKMKPLLHIEAH------SKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       118 ~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      ....++.++|+|+. +++.+.|+.+.+|+...++.......+      ......+.+.+++. ++..+.++.+.+|+...
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISA  243 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCC
Confidence            34568899999864 568889999999999887766554322      12234455666654 45556788999999887


Q ss_pred             Cceeeeee--ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC--cccccCCCCeEEEEeCCCCceEEEeccCCCeEEE
Q psy3337         191 GSLSKELK--WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP--LAQNKRGISYVQQWDVDSGRLRLAREMKESLSAL  266 (297)
Q Consensus       191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~  266 (297)
                      +.......  .+................+++++++..++....+  ..+....++.+.+||..+++.+..+.....+.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~  323 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAI  323 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEE
Confidence            65433222  1111111111112223346778888777665442  3445566789999999999999988877779999


Q ss_pred             EEcCCCCE--EEEEecCCCeEEEEEeCCceecC
Q psy3337         267 AVRDDGRF--VAVGTMFTGSVFVYIAFSLQMCR  297 (297)
Q Consensus       267 ~~s~dg~~--l~~~~~~dg~i~vwd~~~~~~~~  297 (297)
                      +|+|||+.  +++++. |+.|++||+.+++.++
T Consensus       324 a~spDG~~~l~vt~~~-d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         324 SVAQDGGPDLYALSAG-TEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             EECCCCCEEEEEEeCC-CCeEEEEECCCCCEEE
Confidence            99999985  456777 9999999999998763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=5e-15  Score=124.57  Aligned_cols=199  Identities=11%  Similarity=-0.013  Sum_probs=133.1

Q ss_pred             CCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEc----------CCCcEEEEeCCCCeeeEEeccccC--
Q psy3337          94 SKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGG----------TDGHLRLWSFPKMKPLLHIEAHSK--  160 (297)
Q Consensus        94 ~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~--  160 (297)
                      ..+..+.+ |..+++.+..+. ++...  .++|+|||+.|++.+          .|+.|.+||..+++++..+..+..  
T Consensus        43 ~g~~~~~~~d~~~~~~~~~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~  119 (368)
T d1mdah_          43 AGTTENWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR  119 (368)
T ss_dssp             CSSEEEEEEETTTTEEEEEEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred             CCcceEEEEeCCCCcEEEEEe-CCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce
Confidence            34456777 899999888887 55444  589999999888654          477899999999998887754332  


Q ss_pred             -----CeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeccC----------------CCCceEEEEee------
Q psy3337         161 -----EIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLSKELKWNT----------------PDNIKYLFKRC------  212 (297)
Q Consensus       161 -----~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~------  212 (297)
                           ....++|+|||++|+++. .++.+.+||+.+++.+..+..+.                +++....+...      
T Consensus       120 ~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~  199 (368)
T d1mdah_         120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceee
Confidence                 235799999999998776 57999999999887766543321                11100000000      


Q ss_pred             -----------------------------------------------------------------eeeeeeeCCCCeEEE
Q psy3337         213 -----------------------------------------------------------------RYGLVEDSPKRSRLF  227 (297)
Q Consensus       213 -----------------------------------------------------------------~~~~~~~s~~~~~l~  227 (297)
                                                                                       ....++++|++..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~  279 (368)
T d1mdah_         200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             eeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEE
Confidence                                                                             000123334443333


Q ss_pred             EeccC-cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCE-E-EEEecCCCeEEEEEeCCceec
Q psy3337         228 TLANP-LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRF-V-AVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       228 ~~~~~-~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~-l-~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..... ..........|.+||..+++.+..+.....+.+++|+|||+. | +++.. ++.|++||+.+++.+
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~-~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG-TEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT-TTEEEEEESSSCEEE
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCC-CCeEEEEECCCCCEE
Confidence            32210 001112224688999999998888876666999999999973 3 45556 899999999999876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=8e-16  Score=127.27  Aligned_cols=166  Identities=8%  Similarity=0.037  Sum_probs=122.1

Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-cccCCeeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeecc
Q psy3337         123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGEQIV-SIAKDGKAFVWNSKNGSLSKELKWN  200 (297)
Q Consensus       123 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~-s~~~d~~v~lwd~~~~~~~~~~~~~  200 (297)
                      ++|++++++|++++.++.|.+||+.+++.+.++. .|...+.+++|+|||++++ ++..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999999998886 4566788999999999875 5557899999999999888777543


Q ss_pred             CCCCceEEEEeeeeeeeeeCCCCeEEEEeccC----cccccCCCCeEEEEeCCCCceEEEec---cCCCeEEEEEcCCCC
Q psy3337         201 TPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP----LAQNKRGISYVQQWDVDSGRLRLARE---MKESLSALAVRDDGR  273 (297)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----~~~~g~~d~~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~dg~  273 (297)
                      .... ..   ......++++|||+++++....    .......+..+.+||..+++....+.   ....+..+.+++++.
T Consensus        82 ~~~~-~~---~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          82 SVPG-EV---GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             CSTT-EE---EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             cccc-cc---CCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence            3211 11   1112347899999999887542    22233467889999998876544332   233466777888887


Q ss_pred             EEEEEecCCCeEEEEEeCCceec
Q psy3337         274 FVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       274 ~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .++++    +.+.+|++.+++.+
T Consensus       158 ~~~~~----~~~~~~~~~~~~~~  176 (346)
T d1jmxb_         158 LYVAG----PDIYKMDVKTGKYT  176 (346)
T ss_dssp             EEEES----SSEEEECTTTCCEE
T ss_pred             EEEeC----CcceEEEccCCCEE
Confidence            66643    34888998877653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.2e-13  Score=113.50  Aligned_cols=149  Identities=7%  Similarity=0.056  Sum_probs=105.7

Q ss_pred             EEEEEcCCCcEEEEeCCCCeeeE--EeccccCCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeccCCCCceE
Q psy3337         131 LMVTGGTDGHLRLWSFPKMKPLL--HIEAHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNSKNGSLSKELKWNTPDNIKY  207 (297)
Q Consensus       131 ~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~~~~  207 (297)
                      .+++++.|++|++|++.+...+.  ....|.+.+..|+|+|||++|++++ .|+.|++|++........+..+.+..   
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~---   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC---
Confidence            45788899999999987543322  2235788999999999999986655 58999999998655443333221110   


Q ss_pred             EEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe---ccCCCeEEEEEcCCCCEEEEEecCCCe
Q psy3337         208 LFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR---EMKESLSALAVRDDGRFVAVGTMFTGS  284 (297)
Q Consensus       208 ~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~---~~~~~v~~~~~s~dg~~l~~~~~~dg~  284 (297)
                          .....++|+|||++|+++..       .++.+.+|+..........   .....+.++.++||+++++++...+..
T Consensus        83 ----~~p~~l~~spDg~~l~v~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~  151 (333)
T d1ri6a_          83 ----GSLTHISTDHQGQFVFVGSY-------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR  151 (333)
T ss_dssp             ----SCCSEEEECTTSSEEEEEET-------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred             ----CCceEEEEcCCCCEEeeccc-------CCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccce
Confidence                11123789999999988643       4778999988775544332   223348899999999998888863678


Q ss_pred             EEEEEeCCc
Q psy3337         285 VFVYIAFSL  293 (297)
Q Consensus       285 i~vwd~~~~  293 (297)
                      |.+|+..+.
T Consensus       152 i~~~~~~~~  160 (333)
T d1ri6a_         152 ICLFTVSDD  160 (333)
T ss_dssp             EEEEEECTT
T ss_pred             eeEEEeccC
Confidence            999997654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.49  E-value=1.6e-12  Score=108.78  Aligned_cols=166  Identities=7%  Similarity=-0.077  Sum_probs=123.1

Q ss_pred             CCCCcEEEEEEecCCCEEEEE-----cCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------C
Q psy3337         115 GSESLQRVVRLSRNGDLMVTG-----GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------K  179 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~  179 (297)
                      .+..++..++++|||+.++..     +..+.|.+||..+++.+..+..+...  .++|+|||++|++++          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            678889999999999988754     24467999999999999888766543  799999999998875          3


Q ss_pred             CCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc
Q psy3337         180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM  259 (297)
Q Consensus       180 d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  259 (297)
                      ++.|.+||+.+++.+..+..+...  .... ...-..+.|+++++.++....      ..++.+.+|+....+...... 
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~--~~~~-~~~~~~~~~s~dg~~~~v~~~------~~~~~~~~~~~~~~~~~~~~~-  165 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAP--RFDV-GPYSWMNANTPNNADLLFFQF------AAGPAVGLVVQGGSSDDQLLS-  165 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcc--eeEe-ccCCCcEEEEeCCCcEEEEEE------cCCCceEEeeccCCeEEEEec-
Confidence            578999999999988877655321  1111 111234678899887766432      336788999988876654443 


Q ss_pred             CCCeEEEEEcCCCCEE-EEEecCCCeEEEEEeCCcee
Q psy3337         260 KESLSALAVRDDGRFV-AVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       260 ~~~v~~~~~s~dg~~l-~~~~~~dg~i~vwd~~~~~~  295 (297)
                        ...++.++|+|+.+ ++.+. |+.+.+|+..+++.
T Consensus       166 --~~~~~~~s~~g~~~~v~~~~-dg~~~~~~~~~~~~  199 (373)
T d2madh_         166 --SPTCYHIHPGAPSTFYLLCA-QGGLAKTDHAGGAA  199 (373)
T ss_pred             --cceeEEEecCCCcEEEEEcC-CCeEEEEEcCCcee
Confidence              25788999999865 56667 99999999887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.36  E-value=4.7e-11  Score=101.00  Aligned_cols=196  Identities=7%  Similarity=-0.018  Sum_probs=135.1

Q ss_pred             CcCCCCCCCceEEE-EeeCCCeEEEEec-----------------------------CCCCcEEEEEEecCCCEEEEE-c
Q psy3337          88 ILNSIDSKEKNLRF-GFKTFDSVQTVFA-----------------------------GSESLQRVVRLSRNGDLMVTG-G  136 (297)
Q Consensus        88 ~l~~~~~~d~~i~~-~~~~~~~~~~~~~-----------------------------~h~~~v~~~~~s~~g~~l~s~-~  136 (297)
                      +...+++.+++|++ ++.+++.++++..                             .|........++|||++|+.. .
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            44568889999999 9999988877531                             022334455568999988554 5


Q ss_pred             CCCcEEEEeCCCCeeeEEec-cccCCeeEEEEccCCC--EEEEEeCCC-----------------cEEEEEcCCCceeee
Q psy3337         137 TDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGE--QIVSIAKDG-----------------KAFVWNSKNGSLSKE  196 (297)
Q Consensus       137 ~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~l~s~~~d~-----------------~v~lwd~~~~~~~~~  196 (297)
                      .++.|.++|+.+++....+. .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            78899999999998877664 3567899999999998  444444332                 123466665555444


Q ss_pred             eeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC---------------------------------cccccCCCCeE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP---------------------------------LAQNKRGISYV  243 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---------------------------------~~~~g~~d~~i  243 (297)
                      +....           ....+.++|+|+++++.+..                                 ....-..++.+
T Consensus       172 I~v~~-----------~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~  240 (441)
T d1qnia2         172 VIVDG-----------NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP  240 (441)
T ss_dssp             EEESS-----------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             EecCC-----------CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence            43221           12236789999888876532                                 01111235667


Q ss_pred             EEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         244 QQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       244 ~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      .+++....+.+..+........+.++|||+++++++..+++|.|||+.+.+
T Consensus       241 vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         241 VVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             EEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred             EEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence            777777677788887776788999999999986655449999999987754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=3.6e-11  Score=99.44  Aligned_cols=145  Identities=8%  Similarity=0.022  Sum_probs=100.4

Q ss_pred             EEEEecCCCEEEEEc-----CCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEE----------eCCCcEEEE
Q psy3337         122 VVRLSRNGDLMVTGG-----TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSI----------AKDGKAFVW  186 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~----------~~d~~v~lw  186 (297)
                      -.+.+|||+.++...     .+..|.+||..+++.+.++..+..  ..++|+|||++|+++          ..|+.|.+|
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence            345689999887643     456799999999999988876543  479999999988764          347899999


Q ss_pred             EcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC----
Q psy3337         187 NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES----  262 (297)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~----  262 (297)
                      |+.+++.+..+..+....  ... ......++|+|++..++...      .+.+..+.+|+..+++.+..+..+..    
T Consensus        84 D~~t~~~~~~~~~~~~~~--~~~-~~~~~~~~~s~dg~~~~v~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          84 DPVTLLPTADIELPDAPR--FLV-GTYPWMTSLTPDGKTLLFYQ------FSPAPAVGVVDLEGKAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             CTTTCCEEEEEEETTCCC--CCB-SCCGGGEEECTTSSEEEEEE------CSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             ECCCCCEEEEEecCCcce--eec-CCCCceEEEecCCCeeEEec------CCCCceeeeeecCCCcEeeEEecCCcceEe
Confidence            999999888776543111  000 01122477999999988764      34567899999999887776654322    


Q ss_pred             ----eEEEEEcCCCCEEEE
Q psy3337         263 ----LSALAVRDDGRFVAV  277 (297)
Q Consensus       263 ----v~~~~~s~dg~~l~~  277 (297)
                          ...+.+++||+.++.
T Consensus       155 ~~~~~~~~~~~~dg~~~~v  173 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKV  173 (355)
T ss_dssp             EEETTEEEEEETTSCEEEE
T ss_pred             ecCCcceEEEcCCCCEEEE
Confidence                223455555554443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=1.6e-11  Score=106.14  Aligned_cols=145  Identities=13%  Similarity=0.073  Sum_probs=106.5

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec-----cccCCeeEEEEccCCCEEEEEeC---------CCcEEEEE
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-----AHSKEIDDVDFSISGEQIVSIAK---------DGKAFVWN  187 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~s~~~---------d~~v~lwd  187 (297)
                      .+.|.++++++..  .|+.+.+||+.+++....+.     .|...|.++.||||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            5789999987764  47789999999998765443     45578999999999999998753         46789999


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC------
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE------  261 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~------  261 (297)
                      +.+++. ..+..+. .         ....+.|||||+.++...         ++.+++|+..+++.........      
T Consensus        99 ~~~~~~-~~l~~~~-~---------~~~~~~~SPDG~~ia~~~---------~~~l~~~~~~~g~~~~~t~~~~~~~~~~  158 (470)
T d2bgra1          99 LNKRQL-ITEERIP-N---------NTQWVTWSPVGHKLAYVW---------NNDIYVKIEPNLPSYRITWTGKEDIIYN  158 (470)
T ss_dssp             TTTTEE-CCSSCCC-T---------TEEEEEECSSTTCEEEEE---------TTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred             CCCCcc-cccccCC-c---------cccccccccCcceeeEee---------cccceEEECCCCceeeeeeccCCCcccc
Confidence            988764 3344332 1         122367999999999865         5789999999887766543221      


Q ss_pred             -------------CeEEEEEcCCCCEEEEEecCCCe-EEEEE
Q psy3337         262 -------------SLSALAVRDDGRFVAVGTMFTGS-VFVYI  289 (297)
Q Consensus       262 -------------~v~~~~~s~dg~~l~~~~~~dg~-i~vwd  289 (297)
                                   ....+.|||||++|+.... |.+ +..|.
T Consensus       159 g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~-d~~~v~~~~  199 (470)
T d2bgra1         159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQF-NDTEVPLIE  199 (470)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE-ECTTCCEEE
T ss_pred             cccceeeeeeecCCccccEECCCCCccceeEe-cCCcCceEE
Confidence                         1356789999999998876 433 44444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=2.6e-11  Score=104.77  Aligned_cols=181  Identities=13%  Similarity=-0.004  Sum_probs=121.3

Q ss_pred             CCceEEE-EeeCCCeEEEEe----cCCCCcEEEEEEecCCCEEEEEcC---------CCcEEEEeCCCCeeeEEeccccC
Q psy3337          95 KEKNLRF-GFKTFDSVQTVF----AGSESLQRVVRLSRNGDLMVTGGT---------DGHLRLWSFPKMKPLLHIEAHSK  160 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~----~~h~~~v~~~~~s~~g~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~  160 (297)
                      .|+.+.+ ++.+++....+.    ..|...|.++.|||||++|+.++.         ++.+.+||+.+++. ..+..|..
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~  112 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPN  112 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCT
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCc
Confidence            4667888 999998766554    134577999999999999998743         56789999998874 56778889


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEE---------eeeeeeeeeCCCCeEEEEecc
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFK---------RCRYGLVEDSPKRSRLFTLAN  231 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l~~~~~  231 (297)
                      .+..+.|||||+.||.. .++.+++|+..++...+......+.. .+...         ......+.|+|||++|++...
T Consensus       113 ~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~-~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         113 NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI-IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT-EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             cccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCc-ccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            99999999999999986 56789999998887665443332211 11000         011234679999999998743


Q ss_pred             C----------------------------cccccCCCCeEEEEeCCCCceEEEe-----------ccCCC-eEEEEEcCC
Q psy3337         232 P----------------------------LAQNKRGISYVQQWDVDSGRLRLAR-----------EMKES-LSALAVRDD  271 (297)
Q Consensus       232 ~----------------------------~~~~g~~d~~i~~wd~~~~~~~~~~-----------~~~~~-v~~~~~s~d  271 (297)
                      .                            .......+..+.+|++..++.....           ..... +..+.|.++
T Consensus       191 d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  270 (470)
T d2bgra1         191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ  270 (470)
T ss_dssp             ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET
T ss_pred             cCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCC
Confidence            1                            1111223345677777654322111           11122 678899998


Q ss_pred             CCEEEEE
Q psy3337         272 GRFVAVG  278 (297)
Q Consensus       272 g~~l~~~  278 (297)
                      +..++..
T Consensus       271 ~~~~~~~  277 (470)
T d2bgra1         271 ERISLQW  277 (470)
T ss_dssp             TEEEEEE
T ss_pred             CceeEEE
Confidence            8876654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.20  E-value=2.3e-09  Score=90.52  Aligned_cols=183  Identities=10%  Similarity=0.040  Sum_probs=119.0

Q ss_pred             cCCCCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCC--EEEEEcCCC-----------------cEEEEeCCC
Q psy3337          89 LNSIDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGD--LMVTGGTDG-----------------HLRLWSFPK  148 (297)
Q Consensus        89 l~~~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~d~-----------------~i~iwd~~~  148 (297)
                      |......+++|.+ |+.+++..+.+...+...+..++|+|+|+  +++..+.+.                 .+..+|..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            3445556667777 99999888877645677889999999997  444444332                 234578888


Q ss_pred             CeeeEEeccccCCeeEEEEccCCCEEEEEeCCC-c--------------EEEEE--------------------------
Q psy3337         149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG-K--------------AFVWN--------------------------  187 (297)
Q Consensus       149 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~-~--------------v~lwd--------------------------  187 (297)
                      .+...++... .....+.|+|+|+++++++.+. .              |.+.+                          
T Consensus       166 ~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~  244 (441)
T d1qnia2         166 MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG  244 (441)
T ss_dssp             CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence            7777666543 4578999999999998877542 1              11111                          


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc-----------eE-E
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR-----------LR-L  255 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~-----------~~-~  255 (297)
                      ......+..+...           ..-..+.++|||+++++.       |..+++|.+||+.+.+           .+ .
T Consensus       245 ~~~~~v~~~IPvg-----------ksPhGv~vSPDGkyl~~~-------~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         245 RGESEFTRYIPVP-----------KNPHGLNTSPDGKYFIAN-------GKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             SSSCSSEEEECCB-----------SSCCCEEECTTSCEEEEE-------CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             ccCCceEEEEeCC-----------CCccCceECCCCCEEEEe-------CCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence            1111111111110           011237789999998875       5679999999987522           11 1


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         256 AREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       256 ~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .....-.....+|+++|..+.+... |..|..|++.
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~-ds~v~kw~~~  341 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFI-DSQVCKWNIA  341 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETT-TTEEEEEEHH
T ss_pred             ecccccCcccceecCCceEEEcccc-cceEEEeccc
Confidence            1111112566789999988888888 9999999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=4.8e-08  Score=78.02  Aligned_cols=181  Identities=17%  Similarity=0.098  Sum_probs=126.5

Q ss_pred             CceEEEEeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEe--ccccCCeeEEEEccCCCE
Q psy3337          96 EKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI--EAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        96 d~~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~  173 (297)
                      .+.|.+.-..+.....+..........+++.++|+++++....+.+.+++. +++.+..+  ..+......+++.++++.
T Consensus        92 ~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i  170 (279)
T d1q7fa_          92 THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEI  170 (279)
T ss_dssp             GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             ccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeE
Confidence            334544334566666664345566789999999998888888888888885 45656555  345567889999999998


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCce
Q psy3337         174 IVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRL  253 (297)
Q Consensus       174 l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~  253 (297)
                      +++....+.|++||. +++.+.++......  ..      -..|++.++|..+++-.       ..++.|.+|+.. |+.
T Consensus       171 ~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~--~~------P~giavD~~G~i~Vad~-------~~~~~v~~f~~~-G~~  233 (279)
T d1q7fa_         171 FISDNRAHCVKVFNY-EGQYLRQIGGEGIT--NY------PIGVGINSNGEILIADN-------HNNFNLTIFTQD-GQL  233 (279)
T ss_dssp             EEEEGGGTEEEEEET-TCCEEEEESCTTTS--CS------EEEEEECTTCCEEEEEC-------SSSCEEEEECTT-SCE
T ss_pred             Eeeeccccceeeeec-CCceeeeecccccc--cC------CcccccccCCeEEEEEC-------CCCcEEEEECCC-CCE
Confidence            888888899999996 56666665322110  11      12377899998665522       224579999854 887


Q ss_pred             EEEeccCC---CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         254 RLAREMKE---SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       254 ~~~~~~~~---~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +..+....   ....+++.|||.+++ +.. +..|++|...++.++
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~l~V-~~~-n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGSVVL-ASK-DYRLYIYRYVQLAPV  277 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEE-EET-TTEEEEEECSCCCCT
T ss_pred             EEEEeCCCCCCCEeEEEEeCCCcEEE-EeC-CCeEEEEEeeeecCC
Confidence            77764432   388999999997555 557 899999999887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.2e-07  Score=74.72  Aligned_cols=189  Identities=11%  Similarity=0.099  Sum_probs=111.4

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCC---cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCE
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDG---HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQ  173 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  173 (297)
                      .|+| |...... ..+. .+...+...+|||||+.||......   .+.+.+...+.. ..+..+........|+|+|..
T Consensus        20 ~l~i~d~dG~~~-~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSC-EEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCc-EEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCe
Confidence            5777 7654444 4444 4566688999999999998764433   466667665554 345557778889999999998


Q ss_pred             EEEEeC-CCcEEE--EEcCCCceeeeeec--------cCCCCceEEEE-------------------------eeeeeee
Q psy3337         174 IVSIAK-DGKAFV--WNSKNGSLSKELKW--------NTPDNIKYLFK-------------------------RCRYGLV  217 (297)
Q Consensus       174 l~s~~~-d~~v~l--wd~~~~~~~~~~~~--------~~~~~~~~~~~-------------------------~~~~~~~  217 (297)
                      ++.... ++...+  +.............        ..+......+.                         .......
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~  176 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  176 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEE
T ss_pred             eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccc
Confidence            886654 222222  22211111110000        00000000000                         0112245


Q ss_pred             eeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecC--CCeEEEEEeCCcee
Q psy3337         218 EDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMF--TGSVFVYIAFSLQM  295 (297)
Q Consensus       218 ~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~--dg~i~vwd~~~~~~  295 (297)
                      .|+|++..++....     ......|.+.+...+.. ..+..........|||||+.|+..+..  ...|+++++..+..
T Consensus       177 ~~spdg~~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         177 DVSSDGKFMVMVSS-----NGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EECTTSSEEEEEEE-----CSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             ccccccceeEEEee-----cCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            78999999888765     33344666677665544 333334447788999999998765541  34688999876653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.00  E-value=1.7e-09  Score=90.06  Aligned_cols=134  Identities=9%  Similarity=-0.074  Sum_probs=93.4

Q ss_pred             CCCcEEEEEEecCCCEE--E-EEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEe----------CC
Q psy3337         116 SESLQRVVRLSRNGDLM--V-TGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA----------KD  180 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l--~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d  180 (297)
                      +.+....++..++++..  + ....++  .|.+||..+++.+..+..+...  .++|+|||+.|++++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            33444455667777643  2 234444  4777799999988888766544  689999999888764          36


Q ss_pred             CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC
Q psy3337         181 GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK  260 (297)
Q Consensus       181 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~  260 (297)
                      +.|.+||..+++.+..+..+....  .. ....-..++|+|||+++++...       .++.+.+||+.+++.+..+..+
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~--~~-~g~~p~~~a~SpDGk~l~va~~-------~~~~v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPR--FS-VGPRVHIIGNCASSACLLFFLF-------GSSAAAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCS--CC-BSCCTTSEEECTTSSCEEEEEC-------SSSCEEEEEETTTEEEEEEECS
T ss_pred             CeEEEEECCCCcEeeeecCCccce--ec-ccCCccceEECCCCCEEEEEeC-------CCCeEEEEECCCCcEeEEeecc
Confidence            789999999999888876543110  00 0001123779999999987643       3789999999999988887665


Q ss_pred             C
Q psy3337         261 E  261 (297)
Q Consensus       261 ~  261 (297)
                      .
T Consensus       166 ~  166 (368)
T d1mdah_         166 S  166 (368)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=1.5e-07  Score=78.19  Aligned_cols=172  Identities=7%  Similarity=0.008  Sum_probs=105.1

Q ss_pred             CCCcEEEEEEecCCCEEEEEcC-CCcEEEEeCCC-Ceee--EEe--ccccCCeeEEEEccCCCEEEEEe-CCCcEEEEEc
Q psy3337         116 SESLQRVVRLSRNGDLMVTGGT-DGHLRLWSFPK-MKPL--LHI--EAHSKEIDDVDFSISGEQIVSIA-KDGKAFVWNS  188 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~~-~~~~--~~~--~~~~~~v~~~~~sp~~~~l~s~~-~d~~v~lwd~  188 (297)
                      ....+.++.|+|||++++++.. ...|.+|+... +...  ..+  .........+.|+|+++++++.. .+++|.+|++
T Consensus       143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            3445789999999998877653 45788887643 3221  122  12345688999999999886655 5789999998


Q ss_pred             CCCceeeeeeccC----CCC-----ceEEEEeeeeeeeeeCCCCeEEEEeccCcccccC---CCCeEEEEeCCC-CceEE
Q psy3337         189 KNGSLSKELKWNT----PDN-----IKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR---GISYVQQWDVDS-GRLRL  255 (297)
Q Consensus       189 ~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~---~d~~i~~wd~~~-~~~~~  255 (297)
                      ..+..........    +..     ....-.......+.++|+|++|++...     +.   ....|..|++.. +....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr-----~~~~~~~~~i~~~~~~~~g~~~~  297 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR-----ANKFELQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE-----ESSTTSCCEEEEEEECTTSCEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc-----cCCCccceEEEEEEecCCCceee
Confidence            7654322111000    000     000000011124778999999998754     21   233477777765 32221


Q ss_pred             Ee-----cc-CCCeEEEEEcC-CCCEEEEEecCCCeEEEEEeCC
Q psy3337         256 AR-----EM-KESLSALAVRD-DGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       256 ~~-----~~-~~~v~~~~~s~-dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      ..     .. ......++++| +|++|+++...++.|.+|++..
T Consensus       298 ~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         298 QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            11     11 22378899998 8999888765489999998653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.79  E-value=1.4e-07  Score=74.60  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=50.2

Q ss_pred             EEecC--CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC-C-----CcEEEEEcCCCcee
Q psy3337         124 RLSRN--GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK-D-----GKAFVWNSKNGSLS  194 (297)
Q Consensus       124 ~~s~~--g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-d-----~~v~lwd~~~~~~~  194 (297)
                      .++||  |+.++..+ ++.|.+.|+.+++. ..|..+...+...+|||||+.||.... +     ..|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            46888  98888664 45688889988775 456667778899999999999886532 2     23777777666543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=1.8e-06  Score=67.79  Aligned_cols=155  Identities=10%  Similarity=0.019  Sum_probs=100.9

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL  197 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~  197 (297)
                      ....++++.++++++++-..+..+..++..................+++++|+++++++...++.|..+|....... .+
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~  176 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VL  176 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-EC
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-ee
Confidence            45689999999998887777777888876544322222222345678999999998888888888999997644322 22


Q ss_pred             eccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-CCCeEEEEEcCCCCEEE
Q psy3337         198 KWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-KESLSALAVRDDGRFVA  276 (297)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~  276 (297)
                      .... .  .      ....+++.++|.++++-.        ..+.|..++............ -.....|+++++|.+++
T Consensus       177 ~~~~-~--~------~p~gi~~d~~g~l~vsd~--------~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~v  239 (260)
T d1rwia_         177 PFTD-I--T------APWGIAVDEAGTVYVTEH--------NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV  239 (260)
T ss_dssp             CCSS-C--C------SEEEEEECTTCCEEEEET--------TTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEE
T ss_pred             eccc-c--C------CCccceeeeeeeeeeeec--------CCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEE
Confidence            1111 0  0      112377889988666633        367888888765432222122 23378999999998777


Q ss_pred             EEecCCCeEEEEEeC
Q psy3337         277 VGTMFTGSVFVYIAF  291 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~  291 (297)
                      +-.. +++|+.++..
T Consensus       240 ad~~-~~rI~~i~~~  253 (260)
T d1rwia_         240 ADRG-NDRVVKLTSL  253 (260)
T ss_dssp             EEGG-GTEEEEECCC
T ss_pred             EECC-CCEEEEEeCC
Confidence            7666 7777776653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.76  E-value=8.3e-07  Score=71.44  Aligned_cols=70  Identities=10%  Similarity=0.071  Sum_probs=56.9

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN  190 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~  190 (297)
                      .+..++++|||+++++...++.|..|+.. ++ ...+......+.+++|+|+|+++++...++.+.+|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            57899999999999999999999999855 33 233444567899999999999999888888888887653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.2e-07  Score=77.26  Aligned_cols=197  Identities=11%  Similarity=0.033  Sum_probs=121.6

Q ss_pred             CCceEEE-EeeCCCeEEEEec--CCCCcEEEEEEecCCCEEEEEc---------CCCcEEEEeCCCCeeeEE--eccccC
Q psy3337          95 KEKNLRF-GFKTFDSVQTVFA--GSESLQRVVRLSRNGDLMVTGG---------TDGHLRLWSFPKMKPLLH--IEAHSK  160 (297)
Q Consensus        95 ~d~~i~~-~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~---------~d~~i~iwd~~~~~~~~~--~~~~~~  160 (297)
                      .++.|.+ ++.+++....+..  -..-.+....||||+++++...         ..+.+.++|+.+++....  ......
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            4567888 8888876444431  1223566888999999887653         356789999988764332  223344


Q ss_pred             CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccCCCCceEEEEee-----------eeeeeeeCCCCeEEEEe
Q psy3337         161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRC-----------RYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~l~~~  229 (297)
                      .+....|||||+.||-.. ++.|.+.+..++..++........   ..+...           .-..+.|||||++|+..
T Consensus       115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~---~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG---VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT---TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc---eeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            567789999999998765 567888888776655443321111   111100           01346799999999987


Q ss_pred             ccC------------------------cccccCC--CCeEEEEeCCCCceEEE-ec-----cCCC-eEEEEEcCCCCEEE
Q psy3337         230 ANP------------------------LAQNKRG--ISYVQQWDVDSGRLRLA-RE-----MKES-LSALAVRDDGRFVA  276 (297)
Q Consensus       230 ~~~------------------------~~~~g~~--d~~i~~wd~~~~~~~~~-~~-----~~~~-v~~~~~s~dg~~l~  276 (297)
                      ...                        .-..|..  ...+.++|+.++..... ..     .... +..+.|+|++++++
T Consensus       191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~  270 (465)
T d1xfda1         191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (465)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEE
Confidence            431                        1112222  12577888876543222 11     1222 78899999998776


Q ss_pred             EEecCC---CeEEEEEeCCcee
Q psy3337         277 VGTMFT---GSVFVYIAFSLQM  295 (297)
Q Consensus       277 ~~~~~d---g~i~vwd~~~~~~  295 (297)
                      ....++   ..|.++|+.+++.
T Consensus       271 ~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         271 TWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             EEEETTSCEEEEEEEETTTCCE
T ss_pred             EEEccccccceEEEEcCCCCcE
Confidence            654322   2578888888764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.71  E-value=6.7e-06  Score=66.54  Aligned_cols=164  Identities=12%  Similarity=0.032  Sum_probs=103.5

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC----CcEEEEEcCCCce
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD----GKAFVWNSKNGSL  193 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d----~~v~lwd~~~~~~  193 (297)
                      -.+..++|.++|++.++-...+.|..|+..+++....+.........++|+++|+++++...+    +.+...+...+..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345689999999988888889999999987776555555556678899999999988776432    3344445444433


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCC
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR  273 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~  273 (297)
                      ........+        ....+.+.+.++|...++-...  ......+.+..++...+........-...+.++|+||++
T Consensus       120 ~~~~~~~~~--------~~~~nd~~~d~~G~l~vtd~~~--~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         120 QDIIEDLST--------AYCIDDMVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             EEEECSSSS--------CCCEEEEEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             eeeccCCCc--------ccCCcceeEEeccceeeccccc--ccccCcceeEEEecccceeEEEeeccceeeeeeeccccc
Confidence            222221111        1123457789999866653220  001123456666665443333333333378899999999


Q ss_pred             EEEEEecCCCeEEEEEeC
Q psy3337         274 FVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       274 ~l~~~~~~dg~i~vwd~~  291 (297)
                      .|..+....+.|+.|++.
T Consensus       190 ~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALE  207 (319)
T ss_dssp             EEEEEEGGGTEEEEEEEC
T ss_pred             eEEEecccCCceEEEEEc
Confidence            775554327899999875

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.5e-07  Score=77.08  Aligned_cols=150  Identities=13%  Similarity=0.073  Sum_probs=97.9

Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccc---cCCeeEEEEccCCCEEEEEe---------CCCcEEEEEcCC
Q psy3337         123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAH---SKEIDDVDFSISGEQIVSIA---------KDGKAFVWNSKN  190 (297)
Q Consensus       123 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~~---------~d~~v~lwd~~~  190 (297)
                      ..|.+++.++.. ..+|.|.+||+.+++....+..+   ...+....||||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            358888765543 56788999999877654333332   23577889999999988764         346788999988


Q ss_pred             CceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCC-C-e-----
Q psy3337         191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKE-S-L-----  263 (297)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~-~-v-----  263 (297)
                      +..........+.        ..+....|||||+.|+.+.         ++.|++.+..++..++...... . |     
T Consensus       101 ~~~~~l~~~~~~~--------~~l~~~~wSPDG~~iafv~---------~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~  163 (465)
T d1xfda1         101 GDPQSLDPPEVSN--------AKLQYAGWGPKGQQLIFIF---------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLS  163 (465)
T ss_dssp             CCCEECCCTTCCS--------CCCSBCCBCSSTTCEEEEE---------TTEEEEESSSSSCCEEEECCCBTTTEEEEEC
T ss_pred             CceeeccCccCCc--------cccceeeeccCCceEEEEe---------cceEEEEecCCCceEEEecccCcceeecccc
Confidence            7653322111111        1122356899999998876         5789999888776655443221 1 2     


Q ss_pred             ------------EEEEEcCCCCEEEEEecCCCeEEEEEe
Q psy3337         264 ------------SALAVRDDGRFVAVGTMFTGSVFVYIA  290 (297)
Q Consensus       264 ------------~~~~~s~dg~~l~~~~~~dg~i~vwd~  290 (297)
                                  .++-|||||++|+.....+..|..+.+
T Consensus       164 d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             chhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence                        467799999999987641344444443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.52  E-value=2.6e-05  Score=62.94  Aligned_cols=162  Identities=13%  Similarity=0.067  Sum_probs=97.0

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCC----CcEEEEeCCCCeeeEEecc--ccCCeeEEEEccCCCEEEEEeCC------Cc
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTD----GHLRLWSFPKMKPLLHIEA--HSKEIDDVDFSISGEQIVSIAKD------GK  182 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d----~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~d------~~  182 (297)
                      ........+++++||+++++...+    +.+...+............  -......+++.|+|++.++....      +.
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcce
Confidence            444556799999999988775432    3355555444443332221  12357789999999877764321      22


Q ss_pred             EEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC-CceEEE-----
Q psy3337         183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS-GRLRLA-----  256 (297)
Q Consensus       183 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~-----  256 (297)
                      +..++.. +..+..+..          ....-+.++|+|+++.|+.+..       ..+.|+.||+.. +.....     
T Consensus       159 v~~~~~d-g~~~~~~~~----------~~~~pnGia~s~dg~~lyvad~-------~~~~I~~~d~~~~g~~~~~~~~~~  220 (319)
T d2dg1a1         159 VYYVSPD-FRTVTPIIQ----------NISVANGIALSTDEKVLWVTET-------TANRLHRIALEDDGVTIQPFGATI  220 (319)
T ss_dssp             EEEECTT-SCCEEEEEE----------EESSEEEEEECTTSSEEEEEEG-------GGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             eEEEecc-cceeEEEee----------ccceeeeeeeccccceEEEecc-------cCCceEEEEEcCCCceecccccee
Confidence            4444432 222222211          0111234889999987776533       367899998764 222211     


Q ss_pred             ---eccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         257 ---REMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       257 ---~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                         .........+++.++|++.++... .+.|.+||. .|+.+
T Consensus       221 ~~~~~~~~~PdGl~vD~~G~l~Va~~~-~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         221 PYYFTGHEGPDSCCIDSDDNLYVAMYG-QGRVLVFNK-RGYPI  261 (319)
T ss_dssp             EEECCSSSEEEEEEEBTTCCEEEEEET-TTEEEEECT-TSCEE
T ss_pred             eeccCCccceeeeeEcCCCCEEEEEcC-CCEEEEECC-CCcEE
Confidence               111222678999999998887777 899999995 56654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.47  E-value=1.7e-05  Score=65.41  Aligned_cols=190  Identities=5%  Similarity=-0.017  Sum_probs=106.5

Q ss_pred             ceEEE---EeeCCCeE--EEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-CeeeEEe-ccccCCeeEEEEcc
Q psy3337          97 KNLRF---GFKTFDSV--QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-MKPLLHI-EAHSKEIDDVDFSI  169 (297)
Q Consensus        97 ~~i~~---~~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~sp  169 (297)
                      +.|..   |.++++..  ..........+.-++|+|++++|.+... +.+..|.+.. +...... .........+.+++
T Consensus        14 ~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~   92 (365)
T d1jofa_          14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC
Confidence            34544   55555432  2222234444557999999999887754 4677776643 3322211 12234466788899


Q ss_pred             CCCEEEEEe---CCCcEEEEEcCC-CceeeeeeccCCCCc-eEEEE-----eeeeeeeeeCCCCeEEEEeccCcccccCC
Q psy3337         170 SGEQIVSIA---KDGKAFVWNSKN-GSLSKELKWNTPDNI-KYLFK-----RCRYGLVEDSPKRSRLFTLANPLAQNKRG  239 (297)
Q Consensus       170 ~~~~l~s~~---~d~~v~lwd~~~-~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~s~~~~~l~~~~~~~~~~g~~  239 (297)
                      +++.++...   ..+.|..+.+.. +.....+........ .....     ......+.|+|+|++++++..       .
T Consensus        93 ~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~-------g  165 (365)
T d1jofa_          93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-------T  165 (365)
T ss_dssp             CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-------T
T ss_pred             CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeC-------C
Confidence            988543322   246666665432 211111111100000 00000     001235889999999998754       2


Q ss_pred             CCeEEEEeCCC-CceE--EEec---cCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         240 ISYVQQWDVDS-GRLR--LARE---MKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       240 d~~i~~wd~~~-~~~~--~~~~---~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                      ...|.+|+... +...  ....   .....+.++|+|+|+++.+..+.+++|.+|++...+
T Consensus       166 ~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            34788887654 3322  2221   123399999999999987777658999999986543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=8.6e-06  Score=63.68  Aligned_cols=138  Identities=12%  Similarity=0.053  Sum_probs=84.3

Q ss_pred             CCCCcEEEEEEecCCCEEE-EEcCCC--cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCC-CcEE--EEEc
Q psy3337         115 GSESLQRVVRLSRNGDLMV-TGGTDG--HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD-GKAF--VWNS  188 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-~~v~--lwd~  188 (297)
                      ..........+++++..++ +...++  .|.+.++..+.. ..+..+........|+|+++.++..+.+ +...  +.|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~  202 (269)
T d2hqsa1         124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  202 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             eccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeec
Confidence            3444455667888776544 444455  455556555433 3444456677888999999988876654 3444  4454


Q ss_pred             CCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEE
Q psy3337         189 KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAV  268 (297)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~  268 (297)
                      ..+.. ..+....           ......|+|||+.|+..+.     -.....|+++++..+...........+...+|
T Consensus       203 ~~~~~-~~~~~~~-----------~~~~p~~SPDG~~i~f~s~-----~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~W  265 (269)
T d2hqsa1         203 ATGGV-QVLSSTF-----------LDETPSLAPNGTMVIYSSS-----QGMGSVLNLVSTDGRFKARLPATDGQVKFPAW  265 (269)
T ss_dssp             TTCCE-EECCCSS-----------SCEEEEECTTSSEEEEEEE-----ETTEEEEEEEETTSCCEEECCCSSSEEEEEEE
T ss_pred             ccccc-eEeecCc-----------cccceEECCCCCEEEEEEc-----CCCCcEEEEEECCCCCEEEEeCCCCcEEeEEe
Confidence            44432 2221111           1122568999999987665     33456899999997665544444334889999


Q ss_pred             cC
Q psy3337         269 RD  270 (297)
Q Consensus       269 s~  270 (297)
                      ||
T Consensus       266 SP  267 (269)
T d2hqsa1         266 SP  267 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            98

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.41  E-value=7.6e-05  Score=59.53  Aligned_cols=157  Identities=13%  Similarity=0.022  Sum_probs=97.9

Q ss_pred             CCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCee-eEEe--ccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy3337         115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKP-LLHI--EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG  191 (297)
Q Consensus       115 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~--~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~  191 (297)
                      .....+.+++|+++|+++++...++.+..|+...... ...+  .........+.+.++++++++.+.++.+..+|...+
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            4567789999999999999988888888887643221 1112  123456889999999999888888888888887665


Q ss_pred             ceeeeeecc--------C----C-----CCceEEE--------------------------EeeeeeeeeeCCCCeEEEE
Q psy3337         192 SLSKELKWN--------T----P-----DNIKYLF--------------------------KRCRYGLVEDSPKRSRLFT  228 (297)
Q Consensus       192 ~~~~~~~~~--------~----~-----~~~~~~~--------------------------~~~~~~~~~~s~~~~~l~~  228 (297)
                      .........        .    +     ....+.+                          .......++++++|.++++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va  224 (302)
T d2p4oa1         145 SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA  224 (302)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE
T ss_pred             cceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE
Confidence            322111100        0    0     0000000                          0001123777888876555


Q ss_pred             eccCcccccCCCCeEEEEeCCCCceEEEe--ccC-CCeEEEEE---cCCCCEEEEEec
Q psy3337         229 LANPLAQNKRGISYVQQWDVDSGRLRLAR--EMK-ESLSALAV---RDDGRFVAVGTM  280 (297)
Q Consensus       229 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~--~~~-~~v~~~~~---s~dg~~l~~~~~  280 (297)
                      ...        ++.|..++.. ++.....  ... ...++++|   ++|++.|++++.
T Consensus       225 ~~~--------~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         225 THI--------YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CBT--------TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EcC--------CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            333        7788888876 4433333  222 33899999   778888877664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=2.1e-05  Score=61.52  Aligned_cols=153  Identities=12%  Similarity=0.054  Sum_probs=100.0

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      ...++++++|+++++....+.+++++-.+...+..... .....++++.++++++++-.....+..++...... ..+..
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~  136 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPF  136 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccccee-eeeee
Confidence            46889999999888877777777776555444433322 34578999999998887766667777777644322 22111


Q ss_pred             cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-CCCeEEEEEcCCCCEEEEE
Q psy3337         200 NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-KESLSALAVRDDGRFVAVG  278 (297)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~  278 (297)
                      .. .        .....+++++++..+++...        .+.|..+|............ -.....+++.++|.++++.
T Consensus       137 ~~-~--------~~p~~i~~~~~g~~~v~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd  199 (260)
T d1rwia_         137 TG-L--------NDPDGVAVDNSGNVYVTDTD--------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE  199 (260)
T ss_dssp             CS-C--------CSCCEEEECTTCCEEEEEGG--------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred             cc-c--------CCcceeeecCCCCEeeeccc--------cccccccccccceeeeeeccccCCCccceeeeeeeeeeee
Confidence            10 0        01123667899887666444        67899999876443332222 2338899999999888877


Q ss_pred             ecCCCeEEEEEeCC
Q psy3337         279 TMFTGSVFVYIAFS  292 (297)
Q Consensus       279 ~~~dg~i~vwd~~~  292 (297)
                      .. .+.|..++...
T Consensus       200 ~~-~~~i~~~~~~~  212 (260)
T d1rwia_         200 HN-TNQVVKLLAGS  212 (260)
T ss_dssp             TT-TTEEEEECTTC
T ss_pred             cC-CCEEEEEeCCC
Confidence            77 88888887543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.37  E-value=1.8e-05  Score=63.73  Aligned_cols=156  Identities=11%  Similarity=0.096  Sum_probs=96.5

Q ss_pred             EEEEEEecCCCEEEEEcC---------------CCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCC-----EEEEEeC
Q psy3337         120 QRVVRLSRNGDLMVTGGT---------------DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE-----QIVSIAK  179 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~s~~~  179 (297)
                      .+.+++.++|++.++-..               .|.|+.++. .++... +...-...+.++|+|++.     ++++-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeE-eeCCcceeeeeEECCCCCcceeEEEEEeec
Confidence            467899999988776422               234444443 333322 222333457899999764     4445567


Q ss_pred             CCcEEEEEcCCCceeeeee--ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEe
Q psy3337         180 DGKAFVWNSKNGSLSKELK--WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAR  257 (297)
Q Consensus       180 d~~v~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  257 (297)
                      .+.|..||+.....+....  ...+.. .    ...-..+++..+|+..++...        .+.|.+||...++.+..+
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~-~----~~~pdGiavD~~GnlyVa~~~--------~g~I~~~dp~~g~~~~~i  263 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGT-H----EGGADGMDFDEDNNLLVANWG--------SSHIEVFGPDGGQPKMRI  263 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCC-S----SCEEEEEEEBTTCCEEEEEET--------TTEEEEECTTCBSCSEEE
T ss_pred             ccceEEeeccCccccceeeEEEEcccc-c----cccceeeEEecCCcEEEEEcC--------CCEEEEEeCCCCEEEEEE
Confidence            7889988875332222111  000000 0    001123778899987666433        689999999988877777


Q ss_pred             ccCCC-eEEEEEcCCCCEEE-EEecCCCeEEEEEeC
Q psy3337         258 EMKES-LSALAVRDDGRFVA-VGTMFTGSVFVYIAF  291 (297)
Q Consensus       258 ~~~~~-v~~~~~s~dg~~l~-~~~~~dg~i~vwd~~  291 (297)
                      ..+.. +++++|.||++.|. +.+. +|.|..+++.
T Consensus       264 ~~p~~~~t~~afg~d~~~lyVt~~~-~g~i~~~~~~  298 (314)
T d1pjxa_         264 RCPFEKPSNLHFKPQTKTIFVTEHE-NNAVWKFEWQ  298 (314)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETT-TTEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCEEEEEECC-CCcEEEEECC
Confidence            66544 89999999998654 4455 8999988864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.32  E-value=4.2e-05  Score=61.51  Aligned_cols=156  Identities=8%  Similarity=0.051  Sum_probs=93.5

Q ss_pred             EEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEecccc----CCeeEEEEccCCCEEEEEeC---------------C
Q psy3337         120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHS----KEIDDVDFSISGEQIVSIAK---------------D  180 (297)
Q Consensus       120 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~s~~~---------------d  180 (297)
                      -..++|.++++.|+++...+.|..+|..............    ...+.+++.++|++.++-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            4689999999988888777778888876543221111111    13578999999988876432               1


Q ss_pred             CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCe----EEEEeccCcccccCCCCeEEEEeCCC-CceE-
Q psy3337         181 GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS----RLFTLANPLAQNKRGISYVQQWDVDS-GRLR-  254 (297)
Q Consensus       181 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~l~~~~~~~~~~g~~d~~i~~wd~~~-~~~~-  254 (297)
                      |.|..++. .++.......           ...-+.++|+|++.    .|+.+.       +..+.|+.||+.. +... 
T Consensus       153 G~v~~~~~-dg~~~~~~~~-----------~~~pNGi~~~~d~d~~~~~lyv~d-------~~~~~i~~~d~~~~g~~~~  213 (314)
T d1pjxa_         153 GSIYCFTT-DGQMIQVDTA-----------FQFPNGIAVRHMNDGRPYQLIVAE-------TPTKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             EEEEEECT-TSCEEEEEEE-----------ESSEEEEEEEECTTSCEEEEEEEE-------TTTTEEEEEEEEETTEEEE
T ss_pred             ceEEEEee-cCceeEeeCC-----------cceeeeeEECCCCCcceeEEEEEe-------ecccceEEeeccCccccce
Confidence            23333332 2222211110           00112366777653    454432       3478899888764 3221 


Q ss_pred             ----EEeccCC--CeEEEEEcCCCCEEEEEecCCCeEEEEEeCCcee
Q psy3337         255 ----LAREMKE--SLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       255 ----~~~~~~~--~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                          ..+....  ....+++.++|++.++... .+.|.+||...++.
T Consensus       214 ~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-~g~I~~~dp~~g~~  259 (314)
T d1pjxa_         214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQP  259 (314)
T ss_dssp             EEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTCBSC
T ss_pred             eeEEEEccccccccceeeEEecCCcEEEEEcC-CCEEEEEeCCCCEE
Confidence                2222222  2678999999998887777 89999999876653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.28  E-value=0.00022  Score=56.02  Aligned_cols=153  Identities=12%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             EEEEecCC-CEEEE-EcCCCcEEEEeCCCCeeeEEec-cccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q psy3337         122 VVRLSRNG-DLMVT-GGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK  198 (297)
Q Consensus       122 ~~~~s~~g-~~l~s-~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~  198 (297)
                      .+++.++. ..+++ .+.++.|..++. .++....+. ........+++.++++++++....+.+.+++. +++.+..+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g  151 (279)
T d1q7fa_          74 RVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFG  151 (279)
T ss_dssp             EEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEE
T ss_pred             cccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeeccc
Confidence            44555443 33333 334456766764 455555553 23455778999999998888777788888885 556666553


Q ss_pred             ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC--CC-eEEEEEcCCCCEE
Q psy3337         199 WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK--ES-LSALAVRDDGRFV  275 (297)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~--~~-v~~~~~s~dg~~l  275 (297)
                      ......        ....+++.+++..+++-..        .+.|++||.. ++.+..+...  .. ...+++.++|+.+
T Consensus       152 ~~~~~~--------~~~~i~~d~~g~i~v~d~~--------~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~  214 (279)
T d1q7fa_         152 CSKHLE--------FPNGVVVNDKQEIFISDNR--------AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEIL  214 (279)
T ss_dssp             CTTTCS--------SEEEEEECSSSEEEEEEGG--------GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred             cccccc--------ccceeeeccceeEEeeecc--------ccceeeeecC-CceeeeecccccccCCcccccccCCeEE
Confidence            322111        1223667888877666443        7899999976 6667666432  22 8899999999977


Q ss_pred             EEEecCCCeEEEEEeCCce
Q psy3337         276 AVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       276 ~~~~~~dg~i~vwd~~~~~  294 (297)
                      ++-...++.|.+|+. +|+
T Consensus       215 Vad~~~~~~v~~f~~-~G~  232 (279)
T d1q7fa_         215 IADNHNNFNLTIFTQ-DGQ  232 (279)
T ss_dssp             EEECSSSCEEEEECT-TSC
T ss_pred             EEECCCCcEEEEECC-CCC
Confidence            765441456888874 344

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.15  E-value=0.00095  Score=52.78  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=100.9

Q ss_pred             CCcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEec--c--ccCCeeEEEEccCCCEEEEEeCC----CcEEEEEc
Q psy3337         117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE--A--HSKEIDDVDFSISGEQIVSIAKD----GKAFVWNS  188 (297)
Q Consensus       117 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~--~~~~v~~~~~sp~~~~l~s~~~d----~~v~lwd~  188 (297)
                      ...+.++++.++|++++++ .+ .+.++|..+++......  .  ....++++.+.|+|++.++....    +.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            4567899999998777654 44 58899998887543221  1  12357899999999987765432    34456666


Q ss_pred             CCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC------CceE--EEeccC
Q psy3337         189 KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS------GRLR--LAREMK  260 (297)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~------~~~~--~~~~~~  260 (297)
                      ..++........           ..-+.+++++++..++.+.       +..+.|+.|++..      ++..  ..+...
T Consensus       136 ~~g~~~~~~~~~-----------~~~Ng~~~s~d~~~l~~~d-------t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~  197 (295)
T d2ghsa1         136 AKGKVTKLFADI-----------SIPNSICFSPDGTTGYFVD-------TKVNRLMRVPLDARTGLPTGKAEVFIDSTGI  197 (295)
T ss_dssp             ETTEEEEEEEEE-----------SSEEEEEECTTSCEEEEEE-------TTTCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             cCCcEEEEeecc-----------CCcceeeecCCCceEEEee-------cccceeeEeeecccccccccceEEEeccCcc
Confidence            555443322211           1123477899998777653       3467899888753      1111  122233


Q ss_pred             CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         261 ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       261 ~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .. ...+++..+|++.++.-. .+.|..||. .++.+
T Consensus       198 ~g~pdG~~vD~~GnlWva~~~-~g~V~~~dp-~G~~~  232 (295)
T d2ghsa1         198 KGGMDGSVCDAEGHIWNARWG-EGAVDRYDT-DGNHI  232 (295)
T ss_dssp             SSEEEEEEECTTSCEEEEEET-TTEEEEECT-TCCEE
T ss_pred             cccccceEEcCCCCEEeeeeC-CCceEEecC-CCcEe
Confidence            33 889999999987777766 888999994 45543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.99  E-value=0.0013  Score=51.98  Aligned_cols=157  Identities=10%  Similarity=-0.013  Sum_probs=101.4

Q ss_pred             EEEEEecC-CCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeec
Q psy3337         121 RVVRLSRN-GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKW  199 (297)
Q Consensus       121 ~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~  199 (297)
                      -+..|++. +++..+--..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ -+.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            36778875 455556557789999999887643 332 3456889999999877765 444 588999988865433221


Q ss_pred             cCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEe
Q psy3337         200 NTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGT  279 (297)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  279 (297)
                       .+..     ...+++.+.+.|+|...++....    ....+.-.+|.+..++.............++|+++++.++...
T Consensus        97 -~~~~-----~~~~~nd~~vd~~G~iw~~~~~~----~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          97 -ESDL-----PGNRSNDGRMHPSGALWIGTMGR----KAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             -STTC-----TTEEEEEEEECTTSCEEEEEEET----TCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             -ecCC-----CcccceeeEECCCCCEEEEeccc----cccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEee
Confidence             1111     11234457789999877764320    1123445666666676655555444478999999998766554


Q ss_pred             cCCCeEEEEEeC
Q psy3337         280 MFTGSVFVYIAF  291 (297)
Q Consensus       280 ~~dg~i~vwd~~  291 (297)
                      ...+.|..|++.
T Consensus       167 t~~~~I~~~~~d  178 (295)
T d2ghsa1         167 TKVNRLMRVPLD  178 (295)
T ss_dssp             TTTCEEEEEEBC
T ss_pred             cccceeeEeeec
Confidence            327889988864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.006  Score=49.99  Aligned_cols=162  Identities=9%  Similarity=0.043  Sum_probs=100.0

Q ss_pred             EEEEe---cCCCEEEEEc-CCCcEEEEeCCCCeeeEEec-cccCCeeEEEEcc--CCCEEEEEeCCC-------------
Q psy3337         122 VVRLS---RNGDLMVTGG-TDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSI--SGEQIVSIAKDG-------------  181 (297)
Q Consensus       122 ~~~~s---~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp--~~~~l~s~~~d~-------------  181 (297)
                      .+++.   +||++|+... .++.|.+-|+.+.+....+. .....+..+...+  .-.+++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            45554   3788877655 67899999999988755333 2344567777654  455777665532             


Q ss_pred             -----cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC-------cccccCC----------
Q psy3337         182 -----KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP-------LAQNKRG----------  239 (297)
Q Consensus       182 -----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-------~~~~g~~----------  239 (297)
                           .+.++|..+.+....+....           ....+.++++|+++++.+..       .-++.+.          
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g-----------~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~  237 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSG-----------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  237 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESS-----------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             hhcceEEEEEecCCceEEEEeeeCC-----------ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH
Confidence                 25567777665554443221           11236779999988886531       0000011          


Q ss_pred             -------------CCeEEEEeCCC---CceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCce
Q psy3337         240 -------------ISYVQQWDVDS---GRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ  294 (297)
Q Consensus       240 -------------d~~i~~wd~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~  294 (297)
                                   -+.+.+.|.+.   ...+..+........+.++|||+++++++.-+.++.|+|+.+..
T Consensus       238 rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         238 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             HhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence                         12344555543   23344455555577899999999988777669999999987643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.38  E-value=0.025  Score=46.28  Aligned_cols=192  Identities=13%  Similarity=0.047  Sum_probs=111.6

Q ss_pred             CCCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecC--CCEEEEEcCCC------------------cEEEEeCCCCe
Q psy3337          92 IDSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRN--GDLMVTGGTDG------------------HLRLWSFPKMK  150 (297)
Q Consensus        92 ~~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d~------------------~i~iwd~~~~~  150 (297)
                      ....+..|-+ ++.+.+..+.+.......+..++..++  -.+++.++.+.                  .+.++|..+.+
T Consensus       105 NDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~  184 (459)
T d1fwxa2         105 NDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE  184 (459)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTE
T ss_pred             EcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCce
Confidence            3444445555 777777666554334445667776554  45777766532                  35678888888


Q ss_pred             eeEEeccccCCeeEEEEccCCCEEEEEeCCC---------------cEEEEEcCC-------Cc--e---eeeeeccCC-
Q psy3337         151 PLLHIEAHSKEIDDVDFSISGEQIVSIAKDG---------------KAFVWNSKN-------GS--L---SKELKWNTP-  202 (297)
Q Consensus       151 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~---------------~v~lwd~~~-------~~--~---~~~~~~~~~-  202 (297)
                      ....+.- ......++++|+|+++++.+.+.               .+.++++..       |+  .   +..+..... 
T Consensus       185 V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~  263 (459)
T d1fwxa2         185 VAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA  263 (459)
T ss_dssp             EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-
T ss_pred             EEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccC
Confidence            7766653 34567899999999998876432               233444311       00  0   011111100 


Q ss_pred             --CCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCC------------ceEEEeccCCCeEEEEE
Q psy3337         203 --DNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSG------------RLRLAREMKESLSALAV  268 (297)
Q Consensus       203 --~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~------------~~~~~~~~~~~v~~~~~  268 (297)
                        ....++.....-..+..+|||+++++.       |..+.++.++|++.-            .........-....-+|
T Consensus       264 ~~~v~~yIPVpKsPHGV~vSPDGKyi~Va-------GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f  336 (459)
T d1fwxa2         264 SSLFTRYIPIANNPHGCNMAPDKKHLCVA-------GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  336 (459)
T ss_dssp             -CSSEEEEEEESSCCCEEECTTSSEEEEE-------CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred             CcceeEEEecCCCCCceEECCCCCEEEEe-------CCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence              000111111222347789999999986       557899999998741            12222222233677889


Q ss_pred             cCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         269 RDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       269 s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      +..|.-..+--- |..|.-|++..
T Consensus       337 d~~g~aytslfi-ds~v~kw~~~~  359 (459)
T d1fwxa2         337 DGRGNAYTSLFL-DSQVVKWNIED  359 (459)
T ss_dssp             CTTSEEEEEETT-TTEEEEEEHHH
T ss_pred             CCCceEEEEeec-cceEEEEecch
Confidence            888754444445 99999999853

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.24  E-value=0.046  Score=46.90  Aligned_cols=180  Identities=12%  Similarity=0.149  Sum_probs=102.8

Q ss_pred             CceEEEEeeCCCeEEEEec-CCC-------CcEEEEEEecCC---CEEEEEcCCCcEEEEeCCCCeeeEEecccc-----
Q psy3337          96 EKNLRFGFKTFDSVQTVFA-GSE-------SLQRVVRLSRNG---DLMVTGGTDGHLRLWSFPKMKPLLHIEAHS-----  159 (297)
Q Consensus        96 d~~i~~~~~~~~~~~~~~~-~h~-------~~v~~~~~s~~g---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----  159 (297)
                      +..+-+|+.+|+..-.++. .|.       ....-+.+..++   ..++.+..+|.++++|..+++++.....-.     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            3345559999998766652 222       111122233344   367788899999999999998765432100     


Q ss_pred             -----------------------------C--CeeEEEEccCCCEEEEEeCC----------------------------
Q psy3337         160 -----------------------------K--EIDDVDFSISGEQIVSIAKD----------------------------  180 (297)
Q Consensus       160 -----------------------------~--~v~~~~~sp~~~~l~s~~~d----------------------------  180 (297)
                                                   +  .-...+++|+..+++....+                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                         0  01145667766666554322                            


Q ss_pred             --------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCc
Q psy3337         181 --------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR  252 (297)
Q Consensus       181 --------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~  252 (297)
                              |.|.-||+.+++.+-......+.                  .+-.|++ ...+++.|+.|+.++.+|..+|+
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~------------------~gg~l~T-agglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHW------------------NGGTLST-AGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSC------------------CCCEEEE-TTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCC------------------CCceeEE-CCCEEEEECCCCcEEEEECCCCc
Confidence                    34555666666555544332211                  1111222 22233447779999999999999


Q ss_pred             eEEEeccCCCe--EEEEEcCCCC-EEEEEecC-------------------CCeEEEEEeCCce
Q psy3337         253 LRLAREMKESL--SALAVRDDGR-FVAVGTMF-------------------TGSVFVYIAFSLQ  294 (297)
Q Consensus       253 ~~~~~~~~~~v--~~~~~s~dg~-~l~~~~~~-------------------dg~i~vwd~~~~~  294 (297)
                      .+-.+.....+  .-+.+..||+ ||++....                   .+.|.+|.+....
T Consensus       491 ~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~  554 (560)
T d1kv9a2         491 ALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKA  554 (560)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCC
T ss_pred             EeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCC
Confidence            99888765442  2356667886 55543320                   2468888886543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.21  E-value=0.011  Score=47.33  Aligned_cols=163  Identities=13%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             EEEEecCCCEEEEEc------------CCCcEEEEeCCCCeee-EEec--cc-----cCCeeEEEE--ccCCC-EEEEEe
Q psy3337         122 VVRLSRNGDLMVTGG------------TDGHLRLWSFPKMKPL-LHIE--AH-----SKEIDDVDF--SISGE-QIVSIA  178 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~------------~d~~i~iwd~~~~~~~-~~~~--~~-----~~~v~~~~~--sp~~~-~l~s~~  178 (297)
                      .+...|+|..+++++            ..|.|.++|+.+.+.. ..+.  +.     .-....+.+  .++++ +|++..
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            566677776665543            2488999998765422 1221  11     112334443  33454 233332


Q ss_pred             ---CCCcEEEEEcCCCc-eeeeee-ccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC---------cccccCCCCeEE
Q psy3337         179 ---KDGKAFVWNSKNGS-LSKELK-WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP---------LAQNKRGISYVQ  244 (297)
Q Consensus       179 ---~d~~v~lwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---------~~~~g~~d~~i~  244 (297)
                         ...+|-+|++.... .+.-.. ...|..       ...+.+....++..++|-...         ....+...+.+.
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~-------~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLL-------PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTC-------SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccc-------cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence               34567777764322 111111 011110       113456667778777763221         111223344555


Q ss_pred             EEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         245 QWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       245 ~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      -||..  +......+-...+.++++||+++|+++....+.|++|++...
T Consensus       192 ~~~~~--~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         192 YYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EECSS--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             EEcCC--ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            55543  333333333448999999999988776654889999998643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.20  E-value=0.0061  Score=52.76  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             CCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         240 ISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       240 d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+.|.-||+.+|+.+-.........+-.++-.|.+|++|+. ||.++.||..+|+.|
T Consensus       456 ~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~-dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA-DGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             cccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECC-CCeEEEEECCCCcEe
Confidence            36899999999999877766544333334447888889999 999999999999875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.14  E-value=0.0007  Score=52.41  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=49.7

Q ss_pred             eCCC--CeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCC-----CeEEEEEeC
Q psy3337         219 DSPK--RSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFT-----GSVFVYIAF  291 (297)
Q Consensus       219 ~s~~--~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~d-----g~i~vwd~~  291 (297)
                      .+|+  |+.++.++         ++.|++.|+.+++..........+...+|||||+.|+.....+     ..|.++++.
T Consensus         6 ~sPdi~G~~v~f~~---------~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           6 LNPDIHGDRIIFVC---------CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             EEEEEETTEEEEEE---------TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             cCCCCCCCEEEEEe---------CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence            4788  88888765         4679999999888765544445589999999999998654212     247777777


Q ss_pred             Ccee
Q psy3337         292 SLQM  295 (297)
Q Consensus       292 ~~~~  295 (297)
                      +++.
T Consensus        77 ~g~~   80 (281)
T d1k32a2          77 NGEI   80 (281)
T ss_dssp             TTEE
T ss_pred             CCce
Confidence            6654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.10  E-value=0.024  Score=48.82  Aligned_cols=173  Identities=14%  Similarity=0.122  Sum_probs=102.6

Q ss_pred             EEEecCCCEEEEEcC----------------CCcEEEEeCCCCeeeEEeccccCCeeE---------EEEccCCC---EE
Q psy3337         123 VRLSRNGDLMVTGGT----------------DGHLRLWSFPKMKPLLHIEAHSKEIDD---------VDFSISGE---QI  174 (297)
Q Consensus       123 ~~~s~~g~~l~s~~~----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~sp~~~---~l  174 (297)
                      .++.++...+..+..                ...+.-.|.++++.+..++.+...+..         ..+..+++   .+
T Consensus       240 ~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v  319 (571)
T d2ad6a1         240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             cccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccce
Confidence            456666666655433                345778899999988877643322221         12222443   46


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeccC-----------------------CC-CceEEEEe-----eeeeeeeeCCCCeE
Q psy3337         175 VSIAKDGKAFVWNSKNGSLSKELKWNT-----------------------PD-NIKYLFKR-----CRYGLVEDSPKRSR  225 (297)
Q Consensus       175 ~s~~~d~~v~lwd~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~-----~~~~~~~~s~~~~~  225 (297)
                      +..+.+|.++++|..+|+.+.......                       +. ........     ......+++|+...
T Consensus       320 ~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~  399 (571)
T d2ad6a1         320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT  399 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred             eeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCce
Confidence            678899999999999998875432211                       00 00000000     01123566777666


Q ss_pred             EEEeccC-----------------------------cccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEE
Q psy3337         226 LFTLANP-----------------------------LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVA  276 (297)
Q Consensus       226 l~~~~~~-----------------------------~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  276 (297)
                      ++.....                             ........+.|.-+|+.+|+.+-.........+-.++..+.+++
T Consensus       400 ~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf  479 (571)
T d2ad6a1         400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVW  479 (571)
T ss_dssp             EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEE
T ss_pred             EEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEE
Confidence            6553321                             00111234689999999999887665443322222333566788


Q ss_pred             EEecCCCeEEEEEeCCceec
Q psy3337         277 VGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       277 ~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +|+. ||.++.+|..+|+.|
T Consensus       480 ~G~~-dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         480 YATL-DGYLKALDNKDGKEL  498 (571)
T ss_dssp             EECT-TSEEEEEETTTCCEE
T ss_pred             EECC-CCeEEEEECCCCcEE
Confidence            8999 999999999999875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.07  E-value=0.0048  Score=53.25  Aligned_cols=157  Identities=14%  Similarity=0.152  Sum_probs=95.9

Q ss_pred             CcEEEEeCCCCeeeEEeccccCCeeE---------EEEccCC---CEEEEEeCCCcEEEEEcCCCceeeeeeccCC----
Q psy3337         139 GHLRLWSFPKMKPLLHIEAHSKEIDD---------VDFSISG---EQIVSIAKDGKAFVWNSKNGSLSKELKWNTP----  202 (297)
Q Consensus       139 ~~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~sp~~---~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~----  202 (297)
                      ..|.-.|+.+++....++.....+..         +....++   ..++.++.+|.++++|..+|+.+........    
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            45777788999987766643322221         2222233   2566788899999999999988755432110    


Q ss_pred             -----------------CCceEEEEee-----eeeeeeeCCCCeEEEEeccC--c-------------------------
Q psy3337         203 -----------------DNIKYLFKRC-----RYGLVEDSPKRSRLFTLANP--L-------------------------  233 (297)
Q Consensus       203 -----------------~~~~~~~~~~-----~~~~~~~s~~~~~l~~~~~~--~-------------------------  233 (297)
                                       ......+...     .+...+++|+...++.....  .                         
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                             0000011000     11245667777666654321  0                         


Q ss_pred             -ccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         234 -AQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       234 -~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                       .-.+...+.|.-||+.+++.+-.+.......+-.++-.|.++++|+. ||.++.||..+|+.|
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~-dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA-AGQMHAYSADKGEAL  492 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECC-CCcEEEEECCCCcEe
Confidence             00112246899999999999877765544333334446778888999 999999999999875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.038  Score=42.38  Aligned_cols=184  Identities=9%  Similarity=-0.049  Sum_probs=108.6

Q ss_pred             CCCCceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccC
Q psy3337          93 DSKEKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS  170 (297)
Q Consensus        93 ~~~d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  170 (297)
                      ...++.|+. ++........+. .....+.++++..-++.| ++-...+.|.+.++........+.........+++.|.
T Consensus        54 d~~~~~I~~~~l~g~~~~~v~~-~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~  132 (263)
T d1npea_          54 DISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV  132 (263)
T ss_dssp             ETTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred             ECCCCeEEEEEcccCCcEEEEE-eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecc
Confidence            344556666 655444433333 333567899998755555 45566789999998755433333333456889999997


Q ss_pred             CCEEEEEeCC-CcEEEE--EcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEe
Q psy3337         171 GEQIVSIAKD-GKAFVW--NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD  247 (297)
Q Consensus       171 ~~~l~s~~~d-~~v~lw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd  247 (297)
                      ..+++..... +..+||  ++. |.....+.... .  .      .-..+++.+.+..|+.+..       ..+.|...+
T Consensus       133 ~g~ly~t~~~~~~~~I~r~~~d-G~~~~~i~~~~-~--~------~P~glaiD~~~~~lYw~d~-------~~~~I~~~~  195 (263)
T d1npea_         133 RGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDN-L--G------LPNGLTFDAFSSQLCWVDA-------GTHRAECLN  195 (263)
T ss_dssp             TTEEEEEECCSSSCEEEEEETT-SCCCEEEECTT-C--S------CEEEEEEETTTTEEEEEET-------TTTEEEEEE
T ss_pred             cCcEEEeecCCCCcEEEEecCC-CCCceeeeeec-c--c------ccceEEEeecCcEEEEEeC-------CCCEEEEEE
Confidence            7777655432 233344  443 22222221111 0  0      0123677877777777543       357899999


Q ss_pred             CCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         248 VDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +........+.+.....++++.  +.+|.......+.|...|..+++.+
T Consensus       196 ~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         196 PAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             TTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence            9865544444443446788875  4566555542788999998887643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.04  E-value=0.059  Score=46.29  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=32.6

Q ss_pred             cccccCCCCeEEEEeCCCCceEEEeccCCCe--EEEEEcCCCC-EEEE
Q psy3337         233 LAQNKRGISYVQQWDVDSGRLRLAREMKESL--SALAVRDDGR-FVAV  277 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v--~~~~~s~dg~-~l~~  277 (297)
                      +++.|+.|+.++.+|.++|+.+-.+.....+  .-+.|..||+ ||++
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            3334778999999999999999888765442  3366666886 5544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.87  E-value=0.035  Score=48.04  Aligned_cols=174  Identities=13%  Similarity=0.127  Sum_probs=101.5

Q ss_pred             EEEEecCCCEEEEEcC----------------CCcEEEEeCCCCeeeEEeccccCCee---------EEEE-ccCCC---
Q psy3337         122 VVRLSRNGDLMVTGGT----------------DGHLRLWSFPKMKPLLHIEAHSKEID---------DVDF-SISGE---  172 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~----------------d~~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~-sp~~~---  172 (297)
                      .+++.+...++..+..                ...|.-.|+.+++.+..++.....+.         -+.. ..+++   
T Consensus       245 ~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~  324 (596)
T d1w6sa_         245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (596)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             ccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeecccccccccc
Confidence            3455666666655432                23477889999998877653222111         1111 22443   


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeccCCC------------------------CceEEEEee-----eeeeeeeCCCC
Q psy3337         173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTPD------------------------NIKYLFKRC-----RYGLVEDSPKR  223 (297)
Q Consensus       173 ~l~s~~~d~~v~lwd~~~~~~~~~~~~~~~~------------------------~~~~~~~~~-----~~~~~~~s~~~  223 (297)
                      .++....+|.++++|..+|+.+.........                        .....+...     .....+++|+.
T Consensus       325 ~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~  404 (596)
T d1w6sa_         325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             ceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCC
Confidence            5777889999999999999887543321100                        000000000     01234566666


Q ss_pred             eEEEEeccCc-------------------------------ccccCCCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCC
Q psy3337         224 SRLFTLANPL-------------------------------AQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDG  272 (297)
Q Consensus       224 ~~l~~~~~~~-------------------------------~~~g~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg  272 (297)
                      ..++......                               .......+.|.-||+.+|+.+-.......+.+-.++..|
T Consensus       405 ~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTag  484 (596)
T d1w6sa_         405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAG  484 (596)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT
T ss_pred             ceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecC
Confidence            5555432210                               000012368999999999987665544333333334467


Q ss_pred             CEEEEEecCCCeEEEEEeCCceec
Q psy3337         273 RFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      .+++.|+. ||.++.+|..+|+.|
T Consensus       485 glVF~G~~-Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         485 DLVFYGTL-DGYLKARDSDTGDLL  507 (596)
T ss_dssp             TEEEEECT-TSEEEEEETTTCCEE
T ss_pred             CEEEEECC-CCeEEEEECCCCcEe
Confidence            78888999 999999999999976

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.73  E-value=0.031  Score=48.27  Aligned_cols=57  Identities=21%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             CCCeEEEEeCCCCceEEEeccCCCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         239 GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       239 ~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      ..+.|.-+|+.+|+.+-....+..+.+-.++..|..|++|+. ||.++.||..||+.|
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~-dg~l~A~Da~TGe~L  520 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTG-DGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             CCCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCC-CCeEEEEECCCCcEe
Confidence            357899999999999887776555443334557788888999 999999999999976

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.11  Score=39.71  Aligned_cols=163  Identities=9%  Similarity=-0.048  Sum_probs=99.6

Q ss_pred             CCCcEEEEEEecCCCEEEE-EcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEE-eCCCcEEEEEcCCCce
Q psy3337         116 SESLQRVVRLSRNGDLMVT-GGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSI-AKDGKAFVWNSKNGSL  193 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~d~~v~lwd~~~~~~  193 (297)
                      +...+.+++|.+..+.|.- -..++.|+..++........+......+.++++..-+..|+.+ ...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            3345678999987766554 4566788888887655444444334568899998766666544 4567899998864432


Q ss_pred             eeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc-CCCeEEEEEcCCC
Q psy3337         194 SKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM-KESLSALAVRDDG  272 (297)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~dg  272 (297)
                       ..+.....         .....++.+|...+++....     +.....|..-++........... -....++++.+.+
T Consensus       114 -~~l~~~~l---------~~p~~l~vdp~~g~ly~t~~-----~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~  178 (263)
T d1npea_         114 -RVLFDTGL---------VNPRGIVTDPVRGNLYWTDW-----NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS  178 (263)
T ss_dssp             -EEEECSSC---------SSEEEEEEETTTTEEEEEEC-----CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTT
T ss_pred             -EEEecccc---------cCCcEEEEecccCcEEEeec-----CCCCcEEEEecCCCCCceeeeeecccccceEEEeecC
Confidence             22221110         01224667887777776544     33344566666664333333322 2337899999887


Q ss_pred             CEEEEEecCCCeEEEEEeCCc
Q psy3337         273 RFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       273 ~~l~~~~~~dg~i~vwd~~~~  293 (297)
                      +.|.......+.|...++...
T Consensus       179 ~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         179 SQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTEE
T ss_pred             cEEEEEeCCCCEEEEEECCCC
Confidence            777666532778888877543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.46  E-value=0.22  Score=42.65  Aligned_cols=45  Identities=18%  Similarity=0.319  Sum_probs=32.7

Q ss_pred             ccccCCCCeEEEEeCCCCceEEEeccCCC--eEEEEEcCCCC-EEEEE
Q psy3337         234 AQNKRGISYVQQWDVDSGRLRLAREMKES--LSALAVRDDGR-FVAVG  278 (297)
Q Consensus       234 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~dg~-~l~~~  278 (297)
                      ++.|+.|+.++.+|..+|+++-.+.....  -.-+.|..||+ ||++.
T Consensus       500 VF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         500 VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            33477799999999999999988876544  22366777885 55543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.33  E-value=0.051  Score=44.85  Aligned_cols=107  Identities=17%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             CCCcEEEEEEecCCCEEEEE----c-CCCcEEEEeCCCCeeeE-EeccccCCeeEEEEccCCCEEEEEeCC---------
Q psy3337         116 SESLQRVVRLSRNGDLMVTG----G-TDGHLRLWSFPKMKPLL-HIEAHSKEIDDVDFSISGEQIVSIAKD---------  180 (297)
Q Consensus       116 h~~~v~~~~~s~~g~~l~s~----~-~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~d---------  180 (297)
                      +.-.+...++|||+++++.+    | ..-.|+++|+.+++.+. .+.  ......+.|.+|++.|+....+         
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            33345567889999988843    2 22368999999998664 222  1123578999999987755432         


Q ss_pred             -------CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEec
Q psy3337         181 -------GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLA  230 (297)
Q Consensus       181 -------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  230 (297)
                             ..|.+|.+.+...--.+..+.++...+.      ..+..++++++++...
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~------~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM------GGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE------EEEEECTTSCEEEEEE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceE------EeeeccCCcceeeEEe
Confidence                   2477777766543322222222221111      1245688988876543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.21  Score=38.59  Aligned_cols=166  Identities=10%  Similarity=0.102  Sum_probs=96.8

Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeecc
Q psy3337         122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG-SLSKELKWN  200 (297)
Q Consensus       122 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~-~~~~~~~~~  200 (297)
                      +.-.+|..+.||--+ ..++.+||+++.+.+..+.- ...|.-..|-.+. .|+..+ +..|+-|++... .+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            455788888887665 55899999999988877764 4468888887543 555443 457999998532 344545444


Q ss_pred             CCCCc------------eEEEE------------------------------eeeeeeeee--CCCCeEEEEeccCcccc
Q psy3337         201 TPDNI------------KYLFK------------------------------RCRYGLVED--SPKRSRLFTLANPLAQN  236 (297)
Q Consensus       201 ~~~~~------------~~~~~------------------------------~~~~~~~~~--s~~~~~l~~~~~~~~~~  236 (297)
                      .....            .+..-                              ++.|..+..  .++...|++.+.    .
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~----r  218 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV----R  218 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEE----E
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEE----C
Confidence            31100            00000                              000111110  111112222221    2


Q ss_pred             cCCCCeEEEEeCCCCc---------eEEEeccC---CC-eEEEEEcCCCCEEEEEecCCCeEEEEEeCCceec
Q psy3337         237 KRGISYVQQWDVDSGR---------LRLAREMK---ES-LSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMC  296 (297)
Q Consensus       237 g~~d~~i~~wd~~~~~---------~~~~~~~~---~~-v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~~~~  296 (297)
                      +...+.|++.++....         .+..+-.+   .. ..++.+|+--..+..-+. -|.|++||+.|+.++
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK-~G~i~lyDleTgt~i  290 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCI  290 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec-CcEEEEEEcccccEE
Confidence            3445678888875411         11111111   22 678888888788888888 999999999999865

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.27  Score=37.37  Aligned_cols=159  Identities=11%  Similarity=-0.036  Sum_probs=96.2

Q ss_pred             CcEEEEEEecCCCEE-EEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q psy3337         118 SLQRVVRLSRNGDLM-VTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK--DGKAFVWNSKNGSLS  194 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--d~~v~lwd~~~~~~~  194 (297)
                      ..+..+++.+.++.| ++-...+.|.+.++........+.........++++|...+|+....  .+.|...++. |...
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-Gs~~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDI  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC-CCce
Confidence            445688888755444 45566778999998766554455555567889999996666665443  3456666654 3333


Q ss_pred             eeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccC---CCeEEEEEcCC
Q psy3337         195 KELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMK---ESLSALAVRDD  271 (297)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~---~~v~~~~~s~d  271 (297)
                      ..+.... .  .      ....+++.+.+..|+.+..       ..+.|...++............   ....++++.  
T Consensus       156 ~~l~~~~-~--~------~p~gl~iD~~~~~lYw~d~-------~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--  217 (266)
T d1ijqa1         156 YSLVTEN-I--Q------WPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--  217 (266)
T ss_dssp             EEEECSS-C--S------CEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--
T ss_pred             ecccccc-c--c------eeeEEEeeccccEEEEecC-------CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--
Confidence            3332111 0  0      1123667887777777643       3678999998764433333322   226677776  


Q ss_pred             CCEEEEEecCCCeEEEEEeCCcee
Q psy3337         272 GRFVAVGTMFTGSVFVYIAFSLQM  295 (297)
Q Consensus       272 g~~l~~~~~~dg~i~vwd~~~~~~  295 (297)
                      +.+|......++.|...+..+++.
T Consensus       218 ~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         218 EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             CCEEEEEECCCCeEEEEECCCCcc
Confidence            455665554378888888777653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.66  E-value=0.21  Score=40.93  Aligned_cols=107  Identities=14%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             CeeEEEEccCCCEEEEE-eCC----CcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCc--
Q psy3337         161 EIDDVDFSISGEQIVSI-AKD----GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPL--  233 (297)
Q Consensus       161 ~v~~~~~sp~~~~l~s~-~~d----~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~--  233 (297)
                      .+..+++||++++++.+ +.+    -.|+++|+.+++.+...           +..+.+..++|.+|+..|+......  
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-----------i~~~~~~~~~W~~D~~~~~Y~~~~~~~  194 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-----------LERVKFSCMAWTHDGKGMFYNAYPQQD  194 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-----------EEEECSCCEEECTTSSEEEEEECCCCS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-----------cccccccceEEcCCCCEEEEEEecccc
Confidence            34567789999988854 223    35899999999765321           1123344588999999887654310  


Q ss_pred             ------ccccCCCCeEEEEeCCCCc--eEEEeccC--CC-eEEEEEcCCCCEEEEE
Q psy3337         234 ------AQNKRGISYVQQWDVDSGR--LRLAREMK--ES-LSALAVRDDGRFVAVG  278 (297)
Q Consensus       234 ------~~~g~~d~~i~~wd~~~~~--~~~~~~~~--~~-v~~~~~s~dg~~l~~~  278 (297)
                            .........|..|.+.+..  ....+...  .. +..+..++++++++..
T Consensus       195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                  0001123468888887742  23333332  22 6778889999997643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.46  E-value=0.33  Score=41.47  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=43.9

Q ss_pred             cEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeccC
Q psy3337         140 HLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT  201 (297)
Q Consensus       140 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~~~~  201 (297)
                      .+.-||+.+++.+..+.... +...=..+-.+.++++++.|+.++.+|.++|+.+-++....
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            57778888888877665322 22222233367788889999999999999999998887554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.41  E-value=0.46  Score=37.68  Aligned_cols=163  Identities=11%  Similarity=0.004  Sum_probs=90.4

Q ss_pred             cEEEEEEecCCCEEEEEcCCC-----------cEEEEeCCCCee--eEEe-ccccCCeeEEEEccCCCEEEEEeCC-CcE
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDG-----------HLRLWSFPKMKP--LLHI-EAHSKEIDDVDFSISGEQIVSIAKD-GKA  183 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~-----------~i~iwd~~~~~~--~~~~-~~~~~~v~~~~~sp~~~~l~s~~~d-~~v  183 (297)
                      .+.......+|+.++.|+.+.           .+.+||+.+++-  ...+ ..|........+.+++.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            334444556888888887531           367899987652  2222 2233334567888999999988765 579


Q ss_pred             EEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEecc----
Q psy3337         184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREM----  259 (297)
Q Consensus       184 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~----  259 (297)
                      .+||..+..-...-..  +....       ....+..+||+.++..+..  ..+..-..+.+||..+.+=...-..    
T Consensus       101 ~~yd~~~~~w~~~~~~--~~~r~-------~~~~~~~~dG~v~v~GG~~--~~~~~~~~v~~yd~~~~~W~~~~~~~~~~  169 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDM--QVARG-------YQSSATMSDGRVFTIGGSW--SGGVFEKNGEVYSPSSKTWTSLPNAKVNP  169 (387)
T ss_dssp             EEEEGGGTEEEECCCC--SSCCS-------SCEEEECTTSCEEEECCCC--CSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred             eEecCccCcccccccc--ccccc-------ccceeeecCCceeeecccc--ccccccceeeeecCCCCceeecCCCcccc
Confidence            9999987654321111  11100       1124456788877764320  0012234689999887542211000    


Q ss_pred             -----C------CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCCc
Q psy3337         260 -----K------ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSL  293 (297)
Q Consensus       260 -----~------~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~~  293 (297)
                           +      ..-..+...++|+.++.+.. .+.+.+++..+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~-~~~~~~~~~~~~  213 (387)
T d1k3ia3         170 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS-TAMNWYYTSGSG  213 (387)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSS-SEEEEEECSTTC
T ss_pred             cccccccceeeccceeEEEEeCCCCEEEecCc-CCcEEecCcccC
Confidence                 0      00111233456777777776 777777766554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.79  E-value=1  Score=38.41  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             cccccCCCCeEEEEeCCCCceEEEeccCCC--eEEEEEcCCCC-EEEE
Q psy3337         233 LAQNKRGISYVQQWDVDSGRLRLAREMKES--LSALAVRDDGR-FVAV  277 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~dg~-~l~~  277 (297)
                      +++.|+.|+.++.+|..+|+.+-.+.....  -.-+.|..||+ ||++
T Consensus       486 lVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         486 LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence            344578899999999999999988876543  23355566876 4543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.61  Score=35.28  Aligned_cols=177  Identities=6%  Similarity=-0.108  Sum_probs=102.0

Q ss_pred             eEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEE-cCCCcEEEEeCCCCe----eeEEeccccCCeeEEEEccCC
Q psy3337          98 NLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG-GTDGHLRLWSFPKMK----PLLHIEAHSKEIDDVDFSISG  171 (297)
Q Consensus        98 ~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~  171 (297)
                      .|+. ++.+.+.... . .....+.++.|++..+.|.-. ...+.|.-.++....    ....+......+.++++.+.+
T Consensus        11 ~I~~~~l~~~~~~~~-~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSL-I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SEEEEETTSCCCEEE-E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             eEEEEECCCCcceee-e-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            4655 7766554433 3 344567799999877666544 456667766654211    122233333457789998766


Q ss_pred             CEEEEE-eCCCcEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCC
Q psy3337         172 EQIVSI-AKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS  250 (297)
Q Consensus       172 ~~l~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~  250 (297)
                      ..|+.+ ...+.|.+.++........+....          .....++.+|...+++....     + ..+.|...++..
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~----------~~P~~l~vd~~~g~ly~~~~-----~-~~~~I~r~~~dG  152 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENG----------SKPRAIVVDPVHGFMYWTDW-----G-TPAKIKKGGLNG  152 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTT----------CCEEEEEEETTTTEEEEEEC-----S-SSCEEEEEETTS
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCC----------CCcceEEEEcccCeEEEecc-----C-CCcceeEeccCC
Confidence            666655 456789999986544322222111          01123666776656665443     2 245677777765


Q ss_pred             CceEEEeccC-CCeEEEEEcCCCCEEEEEecCCCeEEEEEeCC
Q psy3337         251 GRLRLAREMK-ESLSALAVRDDGRFVAVGTMFTGSVFVYIAFS  292 (297)
Q Consensus       251 ~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~~dg~i~vwd~~~  292 (297)
                      .......... ....++++.+.+..|..+....+.|...++..
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            4333333322 33789999988777776654367888877754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.61  E-value=0.23  Score=39.62  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             EEEEccCCCEEEEEeCCC-----------cEEEEEcCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccC
Q psy3337         164 DVDFSISGEQIVSIAKDG-----------KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP  232 (297)
Q Consensus       164 ~~~~sp~~~~l~s~~~d~-----------~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~  232 (297)
                      ......++++++.|+.+.           .+.+||+.++.-......+.+.. .+.      ...++.+++..++...  
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~------~~~~~~~~g~i~v~Gg--   94 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFC------PGISMDGNGQIVVTGG--   94 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSS------CEEEECTTSCEEEECS--
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc-cce------eEEEEecCCcEEEeec--
Confidence            334445777777766421           36789998775432211111111 000      1244678898777642  


Q ss_pred             cccccCCCCeEEEEeCCCCceEEEeccC--CCeEEEEEcCCCCEEEEEecCC-----CeEEEEEeCCc
Q psy3337         233 LAQNKRGISYVQQWDVDSGRLRLAREMK--ESLSALAVRDDGRFVAVGTMFT-----GSVFVYIAFSL  293 (297)
Q Consensus       233 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~~d-----g~i~vwd~~~~  293 (297)
                           .....+.+||..+..-...-...  ..-.+++..+||++++.|+..+     ..+.+||..+.
T Consensus        95 -----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          95 -----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             -----SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             -----CCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence                 23468999999875543322222  2245677788999999887511     35889998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.44  E-value=0.96  Score=32.97  Aligned_cols=142  Identities=20%  Similarity=0.236  Sum_probs=78.7

Q ss_pred             EEEEEEecCC-CEEEEEcCCCcEEEEeCCCCee--eEEeccc-------cCCeeEEEE-ccCCCEEEEEeC-CCcEEEEE
Q psy3337         120 QRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKP--LLHIEAH-------SKEIDDVDF-SISGEQIVSIAK-DGKAFVWN  187 (297)
Q Consensus       120 v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~-------~~~v~~~~~-sp~~~~l~s~~~-d~~v~lwd  187 (297)
                      +.-++...++ +..++|+....+.+|-++.|+.  +..+.+.       ...|..+.+ .+..+-|+++.. .|.+++++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            4444444444 6777888888899998887764  2233221       123444444 233333555555 77788887


Q ss_pred             cCCCceeeeeeccCCCCceEEEEeeeeeeeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEE-eccC------
Q psy3337         188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLA-REMK------  260 (297)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~------  260 (297)
                      ...|..-....                     .+..+. ++--.     .-.+.....+|+++++..+. +...      
T Consensus       184 pkeGS~~~ay~---------------------~~gnKV-~sdyE-----t~gEsywit~D~~s~~yerve~P~kd~~sy~  236 (313)
T d2hu7a1         184 SGEGSFSSASI---------------------SPGMKV-TAGLE-----TAREARLVTVDPRDGSVEDLELPSKDFSSYR  236 (313)
T ss_dssp             CSSEEEEEEEE---------------------CTTSCE-EEEEE-----ESSCEEEEEECTTTCCEEECCCSSCHHHHHC
T ss_pred             CCCCcccceeE---------------------ccCcee-eeccC-----CCCceEEEEEecccCceeeeecCcccceeec
Confidence            76554433222                     333332 11110     11133444567877654432 2211      


Q ss_pred             -CCeEEEEEcCCCCEEEEEecCCCeEEEEE
Q psy3337         261 -ESLSALAVRDDGRFVAVGTMFTGSVFVYI  289 (297)
Q Consensus       261 -~~v~~~~~s~dg~~l~~~~~~dg~i~vwd  289 (297)
                       -.|.-+-+.|++++++.+-. ||.-++|.
T Consensus       237 p~~I~~~~Y~Pdd~L~iiakr-dG~s~lF~  265 (313)
T d2hu7a1         237 PTAITWLGYLPDGRLAVVARR-EGRSAVFI  265 (313)
T ss_dssp             CSEEEEEEECTTSCEEEEEEE-TTEEEEEE
T ss_pred             ceEEEeeeeCCCCcEEEEEec-CCchheee
Confidence             11555668999999888888 99988886

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.07  E-value=1.9  Score=35.28  Aligned_cols=53  Identities=6%  Similarity=0.041  Sum_probs=38.5

Q ss_pred             CcEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeee--EEec------cccCCeeEEEEccC
Q psy3337         118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL--LHIE------AHSKEIDDVDFSIS  170 (297)
Q Consensus       118 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~--~~~~------~~~~~v~~~~~sp~  170 (297)
                      ..-++++|.|||++|++--..|.|++++..+++..  ..+.      .-......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45579999999999888766899999987766532  2221      12346789999995

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.36  E-value=2.6  Score=33.13  Aligned_cols=150  Identities=11%  Similarity=0.100  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEc------cCCCEEEEEe-CC---CcEEEEEcC-CCceeee
Q psy3337         128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS------ISGEQIVSIA-KD---GKAFVWNSK-NGSLSKE  196 (297)
Q Consensus       128 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s------p~~~~l~s~~-~d---~~v~lwd~~-~~~~~~~  196 (297)
                      +..+++.....+-|++||+. |+.+..+.  .+.++.+..-      ....-|+.++ ++   .+|.+|.+. ....+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            44566666666679999985 77776664  3455555543      2222344444 32   357778764 2233333


Q ss_pred             eeccCCCCceEEEEeeeeeeeee--CCC-CeEEEEeccCcccccCCCCeEEEEeCC---CC----ceEEEeccCCCeEEE
Q psy3337         197 LKWNTPDNIKYLFKRCRYGLVED--SPK-RSRLFTLANPLAQNKRGISYVQQWDVD---SG----RLRLAREMKESLSAL  266 (297)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~--s~~-~~~l~~~~~~~~~~g~~d~~i~~wd~~---~~----~~~~~~~~~~~v~~~  266 (297)
                      +.....   ........+..+|+  ++. +...+.+       ...++.+..|.+.   .+    +.++.+.....+..+
T Consensus       116 ~~~~~~---p~~~~~~~vYGlc~y~~~~~g~~~afv-------~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGC  185 (353)
T d1h6la_         116 ITDPNR---PIASAIDEVYGFSLYHSQKTGKYYAMV-------TGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGM  185 (353)
T ss_dssp             CSCSSS---CEECSSSSCCCEEEEECTTTCCEEEEE-------ECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEE
T ss_pred             cccccc---ccccccCcceEEEEEecCCCCeEEEEE-------EcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceE
Confidence            322110   00000011122333  554 4333333       2347888888663   23    456667766779999


Q ss_pred             EEcCCCCEEEEEecCCCeEEEEEeC
Q psy3337         267 AVRDDGRFVAVGTMFTGSVFVYIAF  291 (297)
Q Consensus       267 ~~s~dg~~l~~~~~~dg~i~vwd~~  291 (297)
                      .+.+....|..+-+ +..|+.+++.
T Consensus       186 VvDde~~~LyisEE-~~Giw~~~a~  209 (353)
T d1h6la_         186 AADDEYGSLYIAEE-DEAIWKFSAE  209 (353)
T ss_dssp             EEETTTTEEEEEET-TTEEEEEESS
T ss_pred             EEeCCCCcEEEecC-ccceEEEEec
Confidence            99999999999988 7777666653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.34  E-value=2.4  Score=32.58  Aligned_cols=179  Identities=12%  Similarity=0.177  Sum_probs=101.8

Q ss_pred             CceEEE-EeeCCCeEEEEecCCCCcEEEEEEecCCCEEEEEcCCCcEEEEeCCC-CeeeEEecccc----CCeeEEEEcc
Q psy3337          96 EKNLRF-GFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-MKPLLHIEAHS----KEIDDVDFSI  169 (297)
Q Consensus        96 d~~i~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~sp  169 (297)
                      ..++.+ ++++.+.++.+. -.+ .|.-=.|-.+ +.|+-. .+..|+-|+++. ..+...+..|.    ..|.....++
T Consensus        82 g~~LQiFnletK~klks~~-~~e-~VvfWkWis~-~~L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~  157 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHT-MTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA  157 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEE-CSS-CCCEEEESSS-SEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred             CCeEEEEehhHhhhhceEE-cCC-CcEEEEecCC-CEEEEE-cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECC
Confidence            347888 999888888875 333 4555566544 355544 355799999953 24666665553    3577788888


Q ss_pred             CCCEEEEEe---C----CCcEEEEEcCCCceeeeeeccC-----------CCCc-eEEEEe-----eeee----------
Q psy3337         170 SGEQIVSIA---K----DGKAFVWNSKNGSLSKELKWNT-----------PDNI-KYLFKR-----CRYG----------  215 (297)
Q Consensus       170 ~~~~l~s~~---~----d~~v~lwd~~~~~~~~~~~~~~-----------~~~~-~~~~~~-----~~~~----------  215 (297)
                      +.++++..+   .    .|.+.||..+.. ..+.+.+|.           +... -+++..     .++.          
T Consensus       158 ~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g  236 (327)
T d1utca2         158 KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG  236 (327)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT
T ss_pred             CCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC
Confidence            888876432   2    267888987643 222233221           0000 011100     0000          


Q ss_pred             -----------------------eeeeCCCCeEEEEeccCcccccCCCCeEEEEeCCCCceEEEeccCCC-eEEEEEcCC
Q psy3337         216 -----------------------LVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDD  271 (297)
Q Consensus       216 -----------------------~~~~s~~~~~l~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~d  271 (297)
                                             .+..++.-..++.+        +.-|.|++||+.++.++..-+-... |...+-..+
T Consensus       237 ~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi--------TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~  308 (327)
T d1utca2         237 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI--------TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  308 (327)
T ss_dssp             CCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE--------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             CCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE--------ecCcEEEEEEcccccEEEEeecCCCceEEeccCCC
Confidence                                   12222333334433        3489999999999999887665444 655554555


Q ss_pred             CCEEEEEecCCCeEEEE
Q psy3337         272 GRFVAVGTMFTGSVFVY  288 (297)
Q Consensus       272 g~~l~~~~~~dg~i~vw  288 (297)
                      ..-++.... +|.|.--
T Consensus       309 ~~Gi~~VNr-~GqVl~v  324 (327)
T d1utca2         309 TAGIIGVNR-KGQVLSV  324 (327)
T ss_dssp             TTEEEEEET-TSEEEEE
T ss_pred             CceEEEECC-CCeEEEE
Confidence            444555556 7776543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.61  E-value=4  Score=32.41  Aligned_cols=101  Identities=9%  Similarity=-0.001  Sum_probs=62.0

Q ss_pred             cEEEEEEecCCCEEEEEcCCCcEEEEeCCCCeeeEEeccccCCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q psy3337         119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK  198 (297)
Q Consensus       119 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d~~v~lwd~~~~~~~~~~~  198 (297)
                      .|..++|+.+  .|+.. .++.+..++............-..++..+.++|.  .++....++.+.++++..+.......
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            4778889754  45544 4456777877654443333334556888888875  56666778999999998775432221


Q ss_pred             ccCCCCceEEEEeeeeeeeeeCCCCeEEEEe
Q psy3337         199 WNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL  229 (297)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  229 (297)
                      +..    .+. .......++|++.|..+++.
T Consensus       163 ~v~----~~~-~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         163 NVT----SFD-VTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             SEE----EEE-ECSSEEEEEETTSCEEEEEE
T ss_pred             Ccc----eEE-ecCCceEEEEeCCcEEEEEe
Confidence            110    111 22334457788888887763