Psyllid ID: psy3342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MEQWSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN
Secondary Structure (PSIPRED)
cccEEEEEEEEEccccccccHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccHHHHHHHHHHHHHccccccccccccHHHcccHHHHHHHHHH
Coil and Loop (DISEMBL)
MEQWSILISDIvmgaepnvsARDALLKWARRttskypgvrvsdftsswrdglafnAIIHRN
Flexible Loop (DISEMBL)
MEQWSILISdivmgaepnvSARDALLKWarrttskypgvrvsdftsswrdglafnaiihrn
Low Complexity Region (SEG)
MEQWSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN
Disordered region (IsUnstruct)
***WSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII***
Disordered Region (DISOPRED)
*EQWSILISD*************ALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN
Disordered Region (DISEMBL)
MEQWSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN
Disordered Region (DISPRO)
*EQWSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQWSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q9QWN8	2388	Spectrin beta chain, non-	yes	N/A	0.950	0.024	0.507	2e-10
O15020	2390	Spectrin beta chain, non-	yes	N/A	0.950	0.024	0.507	2e-10
Q15149	4684	Plectin OS=Homo sapiens G	no	N/A	0.950	0.012	0.492	3e-10
P11277	2137	Spectrin beta chain, eryt	no	N/A	0.950	0.027	0.492	4e-10
P15508	2128	Spectrin beta chain, eryt	no	N/A	0.950	0.027	0.492	4e-10
Q9JI55	4473	Plectin (Fragment) OS=Cri	no	N/A	0.950	0.012	0.476	6e-10
P30427	4687	Plectin OS=Rattus norvegi	no	N/A	0.950	0.012	0.476	6e-10
Q9QXS1	4691	Plectin OS=Mus musculus G	no	N/A	0.950	0.012	0.476	6e-10
Q62261	2363	Spectrin beta chain, non-	no	N/A	0.950	0.024	0.476	8e-10
Q01082	2364	Spectrin beta chain, non-	no	N/A	0.950	0.024	0.476	8e-10

>sp|Q9QWN8|SPTN2_RAT Spectrin beta chain, non-erythrocytic 2 OS=Rattus norvegicus GN=Sptbn2 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 7/65 (10%)

Query: 4   WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
           W+I+    I DI +  E N    SA+DALL W +  T+ YP V V +FT+SWRDGLAFNA
Sbjct: 154 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNA 213

Query: 57  IIHRN 61
           I+H++
Sbjct: 214 IVHKH 218

Probably plays an important role in neuronal membrane skeleton.
Rattus norvegicus (taxid: 10116)

>sp|O15020|SPTN2_HUMAN Spectrin beta chain, non-erythrocytic 2 OS=Homo sapiens GN=SPTBN2 PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 7/65 (10%)

Query: 4   WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
           W+I+    I DI +  E N    SA+DALL W +  T+ YP V V +FT+SWRDGLAFNA
Sbjct: 154 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNA 213

Query: 57  IIHRN 61
           I+H++
Sbjct: 214 IVHKH 218

Probably plays an important role in neuronal membrane skeleton.

Homo sapiens (taxid: 9606)

>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 5/63 (7%)

Query: 4   WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
           W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FTSSWRDG  FNAII
Sbjct: 275 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 334

Query: 59  HRN 61
           HR+
Sbjct: 335 HRH 337

Interlinks intermediate filaments with microtubules and microfilaments and anchors intermediate filaments to desmosomes or hemidesmosomes. Could also bind muscle proteins such as actin to membrane complexes in muscle. May be involved not only in the filaments network, but also in the regulation of their dynamics. Structural component of muscle. Isoform 9 plays a major role in the maintenance of myofibers integrity.

Homo sapiens (taxid: 9606)

>sp|P11277|SPTB1_HUMAN Spectrin beta chain, erythrocytic OS=Homo sapiens GN=SPTB PE=1 SV=5

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 7/65 (10%)

Query: 4   WSIL----ISDIVMGAEP---NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
           W+I+    I DIV+  +      SA+DALL W +  T+ YP V V++FTSSW+DGLAFNA
Sbjct: 151 WTIILRFQIQDIVVQTQEGRETRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNA 210

Query: 57  IIHRN 61
           +IH++
Sbjct: 211 LIHKH 215

Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane.

Homo sapiens (taxid: 9606)

>sp|P15508|SPTB1_MOUSE Spectrin beta chain, erythrocytic OS=Mus musculus GN=Sptb PE=1 SV=4

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 7/65 (10%)

Query: 4   WSIL----ISDIVMGAEP---NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
           W+I+    I DIV+  +      SA+DALL W +  T+ YP V V++FTSSW+DGLAFNA
Sbjct: 151 WTIILRFQIQDIVVQTQEGREQRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNA 210

Query: 57  IIHRN 61
           +IH++
Sbjct: 211 LIHKH 215

Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q9JI55|PLEC_CRIGR Plectin (Fragment) OS=Cricetulus griseus GN=PLEC PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 5/63 (7%)

Query: 4   WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
           W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FT+SWRDG  FNAII
Sbjct: 67  WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 126

Query: 59  HRN 61
           HR+
Sbjct: 127 HRH 129

Interlinks intermediate filaments with microtubules and microfilaments and anchors intermediate filaments to desmosomes or hemidesmosomes. May be involved not only in the cross-linking and stabilization of cytoskeletal intermediate filaments network, but also in the regulation of their dynamics.

Cricetulus griseus (taxid: 10029)

>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 5/63 (7%)

Query: 4   WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
           W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FT+SWRDG  FNAII
Sbjct: 281 WTIILHFKISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 340

Query: 59  HRN 61
           HR+
Sbjct: 341 HRH 343

Interlinks intermediate filaments with microtubules and microfilaments and anchors intermediate filaments to desmosomes or hemidesmosomes. May be involved not only in the cross-linking and stabilization of cytoskeletal intermediate filaments network, but also in the regulation of their dynamics.

Rattus norvegicus (taxid: 10116)

>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 5/63 (7%)

Query: 4   WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
           W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FT+SWRDG  FNAII
Sbjct: 286 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 345

Query: 59  HRN 61
           HR+
Sbjct: 346 HRH 348

Interlinks intermediate filaments with microtubules and microfilaments and anchors intermediate filaments to desmosomes or hemidesmosomes. May be involved not only in the cross-linking and stabilization of cytoskeletal intermediate filaments network, but also in the regulation of their dynamics.

Mus musculus (taxid: 10090)

>sp|Q62261|SPTB2_MOUSE Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus GN=Sptbn1 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 7/65 (10%)

Query: 4   WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
           W+I+    I DI +  E N    SA+DALL W +  T+ YP V + +FT+SWRDG+AFNA
Sbjct: 151 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNA 210

Query: 57  IIHRN 61
           +IH++
Sbjct: 211 LIHKH 215

Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.

Mus musculus (taxid: 10090)

>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 7/65 (10%)

Query: 4   WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
           W+I+    I DI +  E N    SA+DALL W +  T+ YP V + +FT+SWRDG+AFNA
Sbjct: 151 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNA 210

Query: 57  IIHRN 61
           +IH++
Sbjct: 211 LIHKH 215

Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
328713962	5583	PREDICTED: microtubule-actin cross-linki	0.950	0.010	0.822	4e-22
328713964	5304	PREDICTED: microtubule-actin cross-linki	0.950	0.010	0.822	5e-22
328713960	5312	PREDICTED: microtubule-actin cross-linki	0.950	0.010	0.822	5e-22
328713966	5295	PREDICTED: microtubule-actin cross-linki	0.950	0.010	0.822	5e-22
328713958	5303	PREDICTED: microtubule-actin cross-linki	0.950	0.010	0.822	5e-22
328713956	5324	PREDICTED: microtubule-actin cross-linki	0.950	0.010	0.822	5e-22
242010332	8614	Nesprin-1, putative [Pediculus humanus c	0.950	0.006	0.709	1e-20
383850429	8596	PREDICTED: LOW QUALITY PROTEIN: microtub	0.934	0.006	0.736	2e-19
357627918	1416	putative kakapo [Danaus plexippus]	0.918	0.039	0.785	2e-19
194757768	8806	GF11157 [Drosophila ananassae] gi|190622	0.950	0.006	0.709	2e-19

>gi|328713962|ref|XP_001943041.2| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 1 [Acyrthosiphon pisum]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 57/62 (91%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDIV+G EPNVSARDALLKWAR++TSKYPGVRVSDFTSSWRDG+AFNAIIH
Sbjct: 135 WTIILHFQISDIVVGEEPNVSARDALLKWARKSTSKYPGVRVSDFTSSWRDGMAFNAIIH 194

Query: 60  RN 61
           RN
Sbjct: 195 RN 196

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713964|ref|XP_003245225.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 5 [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 57/62 (91%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDIV+G EPNVSARDALLKWAR++TSKYPGVRVSDFTSSWRDG+AFNAIIH
Sbjct: 144 WTIILHFQISDIVVGEEPNVSARDALLKWARKSTSKYPGVRVSDFTSSWRDGMAFNAIIH 203

Query: 60  RN 61
           RN
Sbjct: 204 RN 205

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713960|ref|XP_003245224.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 4 [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 57/62 (91%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDIV+G EPNVSARDALLKWAR++TSKYPGVRVSDFTSSWRDG+AFNAIIH
Sbjct: 144 WTIILHFQISDIVVGEEPNVSARDALLKWARKSTSKYPGVRVSDFTSSWRDGMAFNAIIH 203

Query: 60  RN 61
           RN
Sbjct: 204 RN 205

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713966|ref|XP_003245226.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 6 [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 57/62 (91%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDIV+G EPNVSARDALLKWAR++TSKYPGVRVSDFTSSWRDG+AFNAIIH
Sbjct: 135 WTIILHFQISDIVVGEEPNVSARDALLKWARKSTSKYPGVRVSDFTSSWRDGMAFNAIIH 194

Query: 60  RN 61
           RN
Sbjct: 195 RN 196

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713958|ref|XP_003245223.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 3 [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 57/62 (91%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDIV+G EPNVSARDALLKWAR++TSKYPGVRVSDFTSSWRDG+AFNAIIH
Sbjct: 135 WTIILHFQISDIVVGEEPNVSARDALLKWARKSTSKYPGVRVSDFTSSWRDGMAFNAIIH 194

Query: 60  RN 61
           RN
Sbjct: 195 RN 196

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713956|ref|XP_003245222.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 2 [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 57/62 (91%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDIV+G EPNVSARDALLKWAR++TSKYPGVRVSDFTSSWRDG+AFNAIIH
Sbjct: 135 WTIILHFQISDIVVGEEPNVSARDALLKWARKSTSKYPGVRVSDFTSSWRDGMAFNAIIH 194

Query: 60  RN 61
           RN
Sbjct: 195 RN 196

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010332|ref|XP_002425922.1| Nesprin-1, putative [Pediculus humanus corporis] gi|212509905|gb|EEB13184.1| Nesprin-1, putative [Pediculus humanus corporis]

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/62 (70%), Positives = 57/62 (91%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDI++G EPNV+A+DALL+WA+++T+KYPGVR++DFTSSWRDGLAFNAIIH
Sbjct: 102 WTIILHFQISDIIIGQEPNVTAKDALLRWAKKSTTKYPGVRINDFTSSWRDGLAFNAIIH 161

Query: 60  RN 61
           RN
Sbjct: 162 RN 163

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850429|ref|XP_003700798.1| PREDICTED: LOW QUALITY PROTEIN: microtubule-actin cross-linking factor 1-like [Megachile rotundata]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 54/57 (94%)

Query: 5   SILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
           ++ ISDIV+G EPNV+AR+ALL+WARR+T++YPGVRV+DFT SWRDGLAF+A+IHRN
Sbjct: 126 TVRISDIVVGQEPNVTAREALLRWARRSTARYPGVRVTDFTGSWRDGLAFSALIHRN 182

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627918|gb|EHJ77439.1| putative kakapo [Danaus plexippus]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 53/56 (94%)

Query: 6   ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
           + ISDIV+G EPN++AR+ALL WARR+T+KYPGVRV+DFTSSWRDGLAFNA+IHRN
Sbjct: 208 VKISDIVVGQEPNMTAREALLSWARRSTAKYPGVRVADFTSSWRDGLAFNALIHRN 263

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757768|ref|XP_001961134.1| GF11157 [Drosophila ananassae] gi|190622432|gb|EDV37956.1| GF11157 [Drosophila ananassae]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/62 (70%), Positives = 56/62 (90%), Gaps = 4/62 (6%)

Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    ISDIV+G E NVSAR+ALL+WARR+T++YPGVRV+DFTSSWRDGLAF+A++H
Sbjct: 256 WTIILHFQISDIVVGKEDNVSAREALLRWARRSTARYPGVRVNDFTSSWRDGLAFSALVH 315

Query: 60  RN 61
           RN
Sbjct: 316 RN 317

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
FB|FBgn0013733	8805	shot "short stop" [Drosophila	0.885	0.006	0.777	2.4e-17
WB|WBGene00006876	4955	vab-10 [Caenorhabditis elegans	0.852	0.010	0.615	7.9e-11
UNIPROTKB|E9PKG0	190	PLEC "Plectin" [Homo sapiens (	0.950	0.305	0.492	9.4e-11
WB|WBGene00019792	1083	M116.5 [Caenorhabditis elegans	0.672	0.037	0.731	1e-10
UNIPROTKB|J9NT02	935	SPTBN2 "Uncharacterized protei	0.950	0.062	0.507	3.7e-10
UNIPROTKB|F8W6C1	690	SPTBN1 "Spectrin beta chain, n	0.950	0.084	0.476	6.5e-10
UNIPROTKB|E1BMN5	2397	SPTBN2 "Uncharacterized protei	0.950	0.024	0.507	6.8e-10
RGD|3751	2388	Sptbn2 "spectrin, beta, non-er	0.950	0.024	0.507	1.1e-09
UNIPROTKB|Q9QWN8	2388	Sptbn2 "Spectrin beta chain, n	0.950	0.024	0.507	1.1e-09
UNIPROTKB|E2RSI4	2390	SPTBN2 "Uncharacterized protei	0.950	0.024	0.507	1.1e-09

FB|FBgn0013733 shot "short stop" [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 42/54 (77%), Positives = 52/54 (96%)

Query:     8 ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
             ISDIV+G E NVSAR+ALL+WARR+T++YPGVRV+DFTSSWRDGLAF+A++HRN
Sbjct:   211 ISDIVVGKEDNVSAREALLRWARRSTARYPGVRVNDFTSSWRDGLAFSALVHRN 264

GO:0016203 "muscle attachment" evidence=NAS;TAS

GO:0007517 "muscle organ development" evidence=NAS

GO:0007017 "microtubule-based process" evidence=ISS;NAS

GO:0008017 "microtubule binding" evidence=ISS;TAS

GO:0003779 "actin binding" evidence=ISS;TAS

GO:0016204 "determination of muscle attachment site" evidence=TAS

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0030516 "regulation of axon extension" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IEP;IMP;TAS

GO:0007424 "open tracheal system development" evidence=IMP;TAS

GO:0035149 "lumen formation, open tracheal system" evidence=IMP

GO:0007423 "sensory organ development" evidence=TAS

GO:0007409 "axonogenesis" evidence=TAS

GO:0005874 "microtubule" evidence=IDA;TAS

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=TAS

GO:0016319 "mushroom body development" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP;TAS

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP

GO:0030716 "oocyte fate determination" evidence=IMP

GO:0045169 "fusome" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA;TAS

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0000235 "astral microtubule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0030426 "growth cone" evidence=IDA

WB|WBGene00006876 vab-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 171 (65.3 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 32/52 (61%), Positives = 40/52 (76%)

Query:     9 SDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
             S + +      SARDALL+WARR T+ YP V V++F+SSWRDGLAFNAI+HR
Sbjct:   169 SQVSLHGSDATSARDALLQWARRVTAGYPRVNVNNFSSSWRDGLAFNAILHR 220

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0005882 "intermediate filament" evidence=IDA

GO:0043229 "intracellular organelle" evidence=IDA

GO:0030056 "hemidesmosome" evidence=IDA

GO:0051015 "actin filament binding" evidence=ISS

UNIPROTKB|E9PKG0 PLEC "Plectin" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/63 (49%), Positives = 43/63 (68%)

Query:     4 WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
             W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FTSSWRDG  FNAII
Sbjct:   115 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 174

Query:    59 HRN 61
             HR+
Sbjct:   175 HRH 177

GO:0003779 "actin binding" evidence=IEA

WB|WBGene00019792 M116.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 30/41 (73%), Positives = 37/41 (90%)

Query:    20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
             SARDALL+WA+RTT++YP   V +F++SWRDGLAFNAIIHR
Sbjct:   179 SARDALLQWAKRTTAEYPRGNVINFSNSWRDGLAFNAIIHR 219

GO:0003779 "actin binding" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|J9NT02 SPTBN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query:     4 WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
             W+I+    I DI +  E N    SA+DALL W +  T+ YP V V +FT+SWRDGLAFNA
Sbjct:   154 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNA 213

Query:    57 IIHRN 61
             I+H++
Sbjct:   214 IVHKH 218

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F8W6C1 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:     4 WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
             W+I+    I DI +  E N    SA+DALL W +  T+ YP V + +FT+SWRDG+AFNA
Sbjct:   151 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNA 210

Query:    57 IIHRN 61
             +IH++
Sbjct:   211 LIHKH 215

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007182 "common-partner SMAD protein phosphorylation" evidence=IEA

GO:0007184 "SMAD protein import into nucleus" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0032437 "cuticular plate" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

UNIPROTKB|E1BMN5 SPTBN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 33/65 (50%), Positives = 45/65 (69%)

Query:     4 WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
             W+I+    I DI +  E N    SA+DALL W +  T+ YP V V++FT+SWRDGLAFNA
Sbjct:   154 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVNNFTTSWRDGLAFNA 213

Query:    57 IIHRN 61
             I+H++
Sbjct:   214 IVHKH 218

GO:0043025 "neuronal cell body" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0030534 "adult behavior" evidence=IEA

GO:0021692 "cerebellar Purkinje cell layer morphogenesis" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

RGD|3751 Sptbn2 "spectrin, beta, non-erythrocytic 2" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query:     4 WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
             W+I+    I DI +  E N    SA+DALL W +  T+ YP V V +FT+SWRDGLAFNA
Sbjct:   154 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNA 213

Query:    57 IIHRN 61
             I+H++
Sbjct:   214 IVHKH 218

GO:0003779 "actin binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;TAS

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007416 "synapse assembly" evidence=ISO

GO:0008091 "spectrin" evidence=IEA;ISO;TAS

GO:0016079 "synaptic vesicle exocytosis" evidence=IPI

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0016363 "nuclear matrix" evidence=TAS

GO:0017158 "regulation of calcium ion-dependent exocytosis" evidence=TAS

GO:0021692 "cerebellar Purkinje cell layer morphogenesis" evidence=ISO

GO:0030534 "adult behavior" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0051693 "actin filament capping" evidence=IEA

UNIPROTKB|Q9QWN8 Sptbn2 "Spectrin beta chain, non-erythrocytic 2" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query:     4 WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
             W+I+    I DI +  E N    SA+DALL W +  T+ YP V V +FT+SWRDGLAFNA
Sbjct:   154 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNA 213

Query:    57 IIHRN 61
             I+H++
Sbjct:   214 IVHKH 218

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2RSI4 SPTBN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query:     4 WSIL----ISDIVMGAEPNV---SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
             W+I+    I DI +  E N    SA+DALL W +  T+ YP V V +FT+SWRDGLAFNA
Sbjct:   154 WTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNA 213

Query:    57 IIHRN 61
             I+H++
Sbjct:   214 IVHKH 218

GO:0003779 "actin binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O15020	SPTN2_HUMAN	No assigned EC number	0.5076	0.9508	0.0242	yes	N/A
Q9QWN8	SPTN2_RAT	No assigned EC number	0.5076	0.9508	0.0242	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	61
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	2e-12
COG5069	612	COG5069, SAC6, Ca2+-binding actin-bundling protein	5e-10
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	2e-09
smart00033	101	smart00033, CH, Calponin homology domain	2e-09
pfam11971	85	pfam11971, CAMSAP_CH, CAMSAP CH domain	7e-04

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 56.1 bits (136), Expect = 2e-12
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
            ALL+W      +Y G+ V++F    RDGLA  A++++
Sbjct: 1  EKALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNK 39

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

 Score = 52.3 bits (125), Expect = 5e-10
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 16  EPNVSARDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHR 60
           E  ++    LL W    T  Y P V   DF  SWRDGLAF+A+IH 
Sbjct: 121 EGELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHD 166

Length = 612

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 48.8 bits (117), Expect = 2e-09
 Identities = 10/41 (24%), Positives = 25/41 (60%)

Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          S ++ LL+W  +   +Y  V +++F++  +DG+A   +++ 
Sbjct: 1  SQKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNS 41

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 48.5 bits (116), Expect = 2e-09
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 23 DALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
            LL+W     ++Y    V++F+S  +DG+A  A+++ 
Sbjct: 1  KTLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNS 38

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain

 Score = 33.8 bits (78), Expect = 7e-04
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 27 KWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
            AR T        V + T  + DG A  A+IH 
Sbjct: 2  VSARCT---PLSPPVENLTRDFSDGCALAALIHF 32

This domain is the N-terminal CH domain from the CAMSAP proteins. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
KOG0517|consensus	2473		99.92
KOG0035|consensus	890		99.48
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	99.1
smart00033	103	CH Calponin homology domain. Actin binding domains	98.92
cd00014	107	CH Calponin homology domain; actin-binding domain	98.83
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	98.68
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	98.46
KOG0035|consensus	890		97.21
KOG0046|consensus	627		91.43
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	80.14

>KOG0517|consensus

Probab=99.92  E-value=4.7e-26  Score=181.17  Aligned_cols=59  Identities=51%  Similarity=0.972  Sum_probs=55.8

Q ss_pred             eeE----EEeeeeecCCCC---CCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           3 QWS----ILISDIVMGAEP---NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         3 ~~~----fqI~~i~~~~~~---~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |||    |||++|+++++.   ..|||+|||.|||++|++||+|+|+|||+|||||+||+||||+|
T Consensus       143 IWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIHkH  208 (2473)
T KOG0517|consen  143 IWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIHKH  208 (2473)
T ss_pred             HHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccCccchhcchhHHHHHHhc
Confidence            788    999999998764   57999999999999999999999999999999999999999987

>KOG0035|consensus

Probab=99.48  E-value=5.2e-15  Score=113.65  Aligned_cols=57  Identities=46%  Similarity=0.931  Sum_probs=52.8

Q ss_pred             eeE----EEeeeeecCCCCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           3 QWS----ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         3 ~~~----fqI~~i~~~~~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |||    |.|.+|+++.  ..++++.||.|||+.|++|.+|.|.||+.||+||++|||+||+|
T Consensus       123 i~tlilr~~i~~is~~~--e~~a~egllLwcq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~  183 (890)
T KOG0035|consen  123 IWTLILRFAIQDISVEC--ELSAKEGLLLWCQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRH  183 (890)
T ss_pred             HHHhhccccccchhhhc--chhhhhhhhhheecccCCccccccccceecccchHHHHHHHHhc
Confidence            566    8999998875  57899999999999999999999999999999999999999986

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=99.10  E-value=5.2e-12  Score=93.32  Aligned_cols=44  Identities=43%  Similarity=0.767  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHhhcCCCC-CeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTTSKYP-GVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~~~y~-~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ..+.+..||+||++.+++|- ++.+-+|+.||+||+|||||||.+
T Consensus       123 elt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~  167 (612)
T COG5069         123 ELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDS  167 (612)
T ss_pred             hHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhc
Confidence            47889999999999999994 599999999999999999999964

>smart00033 CH Calponin homology domain

Probab=98.92  E-value=1.7e-10  Score=66.32  Aligned_cols=39  Identities=26%  Similarity=0.582  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342          22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR   60 (61)
Q Consensus        22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~   60 (61)
                      ++.++.||+..++.+.+..++||..+|+||.+||+|++.
T Consensus         2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~   40 (103)
T smart00033        2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNS   40 (103)
T ss_pred             hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHH
Confidence            578999999999998778899999999999999999985

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=98.83  E-value=6.7e-10  Score=64.50  Aligned_cols=40  Identities=23%  Similarity=0.684  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342          21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR   60 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~   60 (61)
                      .++.++.||+..++.+..+.++||.++|+||++||+|++.
T Consensus         2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~   41 (107)
T cd00014           2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNS   41 (107)
T ss_pred             hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHH
Confidence            5788999999999999766899999999999999999985

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=98.68  E-value=8.8e-09  Score=59.71  Aligned_cols=40  Identities=35%  Similarity=0.708  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhhcCCC-CCeeecCCCCCcccchhhhhhhhcC
Q psy3342          22 RDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        22 k~~LL~W~q~~~~~y-~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ++.|+.|++.....+ ++..++||..+|+||++||.||+.+
T Consensus         1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l   41 (108)
T PF00307_consen    1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKL   41 (108)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHH
Confidence            478999999999877 3578999999999999999999853

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=98.46  E-value=1.8e-08  Score=59.24  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=27.2

Q ss_pred             HHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          28 WARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        28 W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |.+.+...+ ...|.||+.|++||+++|+|||.|
T Consensus         1 ~~~~~~~~~-~~~v~dl~~~l~DG~~Lc~Lih~Y   33 (85)
T PF11971_consen    1 WVNARCAPY-FPPVEDLTQDLSDGRALCALIHFY   33 (85)
T ss_pred             CCCcccCCC-CcchhhhhhhhccHHHHHHHHHHh
Confidence            444455545 789999999999999999999987

>KOG0035|consensus

Probab=97.21  E-value=0.00023  Score=55.94  Aligned_cols=41  Identities=24%  Similarity=0.126  Sum_probs=37.2

Q ss_pred             CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      .....||.||++.+.+|+++.++++ .+|+.|.+||||+|.+
T Consensus       421 d~~~~lle~~ke~~~~~ea~~~~~~-~~~~~~e~~~ai~~~~  461 (890)
T KOG0035|consen  421 DYGQALLEECKELTKKHEAFESDLS-AHQDNVEAFCAIAHEL  461 (890)
T ss_pred             chHHHHHHHHHhhcccccccccchh-hhhcchhHHHHHHHHh
Confidence            4457889999999999999999999 9999999999999964

>KOG0046|consensus

Probab=91.43  E-value=0.2  Score=38.41  Aligned_cols=41  Identities=20%  Similarity=0.494  Sum_probs=33.8

Q ss_pred             CCCHHHHHHHHHHhhc--CCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          18 NVSARDALLKWARRTT--SKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~--~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      ++++.+.||+|++.+.  ++| ...++||++...||.+..-|++
T Consensus       262 ~L~PEkiLLrW~N~HL~kag~-~k~~~nFs~DikD~eaY~~LLn  304 (627)
T KOG0046|consen  262 RLPPEKILLRWMNYHLKKAGW-KKTVTNFSSDIKDSEAYTHLLN  304 (627)
T ss_pred             cCCHHHHHHHHHHHHHHhccc-ceehhhhhhhhccHHHHHHHHH
Confidence            5799999999999766  445 3578999999999999776654

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=80.14  E-value=0.27  Score=31.50  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=23.8

Q ss_pred             HHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          25 LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        25 LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |++|.+.-.-   .+.+.++..++.||..+.-|+++|
T Consensus         1 l~~WL~~l~l---s~~~~n~~rDfsdG~lvAEIl~~y   34 (158)
T PF06294_consen    1 LLKWLQSLDL---SRPPKNIRRDFSDGYLVAEILSRY   34 (158)
T ss_dssp             HHHHHHHS-----S--SS-HHHHHTTSHHHHHHHHHH
T ss_pred             ChHHHhcCCC---CCCCCchHHHcccccHHHHHHHHH
Confidence            5789988222   246778888899999999999875

; PDB: 2EE7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	61
1wyq_A	127	Solution Structure Of The Second Ch Domain Of Human		5e-11
1mb8_A	243	Crystal Structure Of The Actin Binding Domain Of Pl		8e-11
3f7p_A	296	Crystal Structure Of A Complex Between Integrin Bet		9e-11
1bkr_A	109	Calponin Homology (Ch) Domain From Human Beta-Spect		1e-10
1aa2_A	108	Calponin Homology (Ch) Domain From Human Beta-Spect		1e-10
1sh5_A	245	Crystal Structure Of Actin-Binding Domain Of Mouse		1e-10
2r0o_A	237	Crystal Structure Of The Actin-Binding Domain Of Hu		1e-08
1wyl_A	116	Solution Structure Of The Ch Domain Of Human Nedd9		3e-08
2dk9_A	118	Solution Structure Of Calponin Homology Domain Of H		3e-08
1bhd_A	118	Second Calponin Homology Domain From Utrophin Lengt		4e-08
1qag_A	226	Actin Binding Region Of The Dystrophin Homologue Ut		9e-08
1dxx_A	246	N-Terminal Actin-Binding Domain Of Human Dystrophin		2e-07
2eyi_A	234	Crystal Structure Of The Actin-Binding Domain Of Hu		2e-07
1wku_A	254	High Resolution Structure Of The Human Alpha-Actini		3e-07
2d89_A	119	Solution Structure Of The Ch Domain From Human Eh D		3e-07
1tjt_A	250	X-Ray Structure Of The Human Alpha-Actinin Isoform		3e-07
1sjj_A	863	Cryo-Em Structure Of Chicken Gizzard Smooth Muscle		5e-07
2d88_A	121	Solution Structure Of The Ch Domain From Human Mica		6e-07
2e9k_A	121	Solution Structure Of The Ch Domain From Human Mica		5e-06
2jv9_A	119	The Solution Structure Of Calponin Homology Domain		2e-05
2d87_A	128	Solution Structure Of The Ch Domain From Human Smoo		3e-05

>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human Spectrin Beta Chain, Brain 2 Length = 127

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
          G+  +  A+DALL W +  T+ YP V V +FT+SWRDGLAFNAI+H++
Sbjct: 1  GSSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKH 48

>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 4   WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
           W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FTSSWRDG  FNAII
Sbjct: 115 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 174
Query: 59  HRN 61
           HR+
Sbjct: 175 HRH 177

>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 4   WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
           W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FTSSWRDG  FNAII
Sbjct: 168 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 227
Query: 59  HRN 61
           HR+
Sbjct: 228 HRH 230

>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At 1.1 Angstrom Resolution Length = 109

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
          SA+DALL W +  T+ YP V + +FT+SWRDG+AFNA+IH++
Sbjct: 3  SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH 44

>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin Length = 108

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
          SA+DALL W +  T+ YP V + +FT+SWRDG+AFNA+IH++
Sbjct: 2  SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH 43

>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 4   WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
           W+I+    ISDI V G   +++A++ LL W++R    Y G+R  +FT+SWRDG  FNAII
Sbjct: 112 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 171
Query: 59  HRN 61
           HR+
Sbjct: 172 HRH 174

>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    I DI +      SA++ LL W +R T+ Y  V V +F  SW+DGLAFNA+IH
Sbjct: 108 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIH 164
Query: 60  RN 61
           R+
Sbjct: 165 RH 166

>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9 Interacting Protein With Calponin Homology And Lim Domains Length = 116

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          G+  +   ++ LL+W +  T+ YPGV VSD +SSW DGLA  A+++R
Sbjct: 1  GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYR 47

>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human Mical-1 Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          ++ LL+W +  T+ YPGV VSD +SSW DGLA  A+++R
Sbjct: 15 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYR 53

>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 25 LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
          LL W R+TT  Y  V V +FT+SW DGLAFNA++HR+
Sbjct: 13 LLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH 49

>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 25  LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
           LL W R+TT  Y  V V +FT+SW DGLAFNA++HR+
Sbjct: 126 LLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH 162

>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 12  VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           +M      ++   LL W R++T  YP V V +FT+SW DGLA NA+IH
Sbjct: 127 IMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIH 174

>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    I DI +      SA++ LL W +R T+ Y  V + +F  SW+DGL F A+IH
Sbjct: 103 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIH 159
Query: 60  RN 61
           R+
Sbjct: 160 RH 161

>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    I DI +      SA++ LL W +R T+ Y  V V +F +SW+DGLA  A+IH
Sbjct: 123 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIH 179
Query: 60  RN 61
           R+
Sbjct: 180 RH 181

>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain Binding Protein 1 Length = 119

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          PN S   +LL W +  T  Y GV++++FT+SWR+GL+F AI+H 
Sbjct: 8  PNAS--QSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHH 49

>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    I DI +      SA++ LL W +R T+ Y  V V +F +SW+DGLA  A+IH
Sbjct: 119 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIH 175
Query: 60  RN 61
           R+
Sbjct: 176 RH 177

>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 4   WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
           W+I+    I DI +      SA++ LL W +R T+ Y  V + +F  SW+DGL F A+IH
Sbjct: 104 WTIILRFAIQDISV---EETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIH 160
Query: 60  RN 61
           R+
Sbjct: 161 RH 162

>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3 Protein Length = 121

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           V+    LL W +R T  Y GV V+D T SW+ GLA  AIIHR
Sbjct: 7  GVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHR 49

>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2 Length = 121

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 25 LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          LL W ++ T  Y  V V+D T+SWR GLA  AIIHR
Sbjct: 14 LLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHR 49

>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From Smoothelin-Like 1 Length = 119

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 19 VSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          + +++ LL+W R  T  Y  V + +F+SSW  G+AF A+IH+
Sbjct: 3  LGSKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHK 44

>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin Splice Isoform L2 Length = 128

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
          G+  +   +  LL W R  T  Y  V + +F+SSW DG+AF A++H
Sbjct: 1  GSSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVH 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	61
1wyl_A	116	NEDD9 interacting protein with calponin homology a	3e-25
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	3e-25
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	4e-25
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	4e-25
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	1e-24
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	2e-24
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	3e-24
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	1e-15
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	2e-14
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	3e-14
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	5e-14
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	3e-13
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	2e-12
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	3e-12
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	4e-10
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	3e-11
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	7e-11
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	8e-11
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	2e-10

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116

 Score = 88.5 bits (220), Expect = 3e-25
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          G+  +   ++ LL+W +  T+ YPGV VSD +SSW DGLA  A+++R
Sbjct: 1  GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYR 47

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128

 Score = 88.6 bits (220), Expect = 3e-25
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          G+  +   +  LL W R  T  Y  V + +F+SSW DG+AF A++H 
Sbjct: 1  GSSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHN 47

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121

 Score = 88.5 bits (220), Expect = 4e-25
 Identities = 22/48 (45%), Positives = 26/48 (54%)

Query: 13 MGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
                V+    LL W +R T  Y GV V+D T SW+ GLA  AIIHR
Sbjct: 2  SSGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHR 49

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127

 Score = 88.6 bits (220), Expect = 4e-25
 Identities = 26/47 (55%), Positives = 35/47 (74%)

Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          G+  +  A+DALL W +  T+ YP V V +FT+SWRDGLAFNAI+H+
Sbjct: 1  GSSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHK 47

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 87.0 bits (216), Expect = 1e-24
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
                +A  +LL W +  T  Y GV++++FT+SWR+GL+F AI+H 
Sbjct: 3  SGSSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHH 49

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118

 Score = 86.6 bits (215), Expect = 2e-24
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query: 13 MGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          M      ++   LL W R+TT  Y  V V +FT+SW DGLAFNA++HR
Sbjct: 1  MSDLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHR 48

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109

 Score = 85.4 bits (212), Expect = 3e-24
 Identities = 24/41 (58%), Positives = 33/41 (80%)

Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          SA+DALL W +  T+ YP V + +FT+SWRDG+AFNA+IH+
Sbjct: 3  SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHK 43

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 66.9 bits (163), Expect = 1e-15
 Identities = 8/41 (19%), Positives = 22/41 (53%)

Query: 20  SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           S  + LL+WA          ++++F++  +D  A+  ++++
Sbjct: 168 SPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQ 208

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 63.5 bits (154), Expect = 2e-14
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 12  VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           V G   +++A++ LL W++R    Y G+R  +FT+SWRDG  FNAIIHR
Sbjct: 125 VSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHR 173

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254

 Score = 63.0 bits (153), Expect = 3e-14
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 4   WSILISDIVMGA-EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           W+I++   +        SA++ LL W +R T+ Y  V V +F +SW+DGLA  A+IHR
Sbjct: 123 WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHR 180

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 63.0 bits (152), Expect = 5e-14
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 4   WS-ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           W+ IL   I   +    SA++ LL W +R T+ Y  V + +F  SW+DGL F A+IHR
Sbjct: 104 WTIILRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHR 161

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296

 Score = 60.5 bits (146), Expect = 3e-13
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 13  MGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
            G   +++A++ LL W++R    Y G+R  +FTSSWRDG  FNAIIHR
Sbjct: 182 SGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHR 229

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 58.1 bits (140), Expect = 2e-12
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 20  SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           ++   LL W R++T  YP V V +FT+SW DGLA NA+IH 
Sbjct: 135 NSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHS 175

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 57.8 bits (139), Expect = 3e-12
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 18  NVSARDALLKWARRTTSK-YPGVRVSDFTSSWRDGLAFNAIIHR 60
            +     LLKW      K      VS+F++  +D  A+  +++ 
Sbjct: 150 RLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNV 193

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 52.0 bits (124), Expect = 4e-10
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 4   WSILISDIVMGAEPNVSARDALLKWARRTTSKY-PGVRVSDFT-SSWRDGLAFNAIIHR 60
              L+  +             +L WA R        +++  F   S   GL F  ++  
Sbjct: 381 MLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWA 439

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 55.1 bits (132), Expect = 3e-11
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 20  SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           + +  LL W +    K P + +++F+  W+ G A  A++  
Sbjct: 170 TPKQRLLGWIQN---KLPQLPITNFSRDWQSGRALGALVDS 207

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 53.8 bits (129), Expect = 7e-11
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 22  RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           +  LL W +    K P + +++F  +W+DG A  A++  
Sbjct: 145 KQRLLGWIQN---KIPYLPITNFNQNWQDGKALGALVDS 180

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 54.0 bits (129), Expect = 8e-11
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 2   EQWSILISDIVMGAEPNVSARDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHR 60
           E + +L  D  +     +     LL+W             VS+F+    DG  +  ++++
Sbjct: 143 ELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQ 202

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 21  ARDALLKWARRTTSK-YPGVRVSDFTS-SWRDGLAFNAIIHR 60
           +   ++ WA    +K   G ++  F   S   G+    ++H 
Sbjct: 409 SDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHG 450

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	99.83
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	99.82
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	99.82
1wyl_A	116	NEDD9 interacting protein with calponin homology a	99.82
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	99.8
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	99.79
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	99.79
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	99.71
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.7
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.7
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.6
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	99.59
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	99.57
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	99.57
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.56
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.35
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.35
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.34
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.3
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.14
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	98.99
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	96.52
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	94.83
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	94.64
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	94.5
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	94.48
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	94.23
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	94.19
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	93.81
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	92.08
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	90.55
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	88.71
2ee7_A	127	Sperm flagellar protein 1; all alpha protein, CH d	82.82
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	81.01

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=99.83  E-value=9.5e-22  Score=118.37  Aligned_cols=43  Identities=56%  Similarity=1.075  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          19 VSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        19 ~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      .|+|++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus         2 ~s~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~   44 (109)
T 1bkr_A            2 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH   44 (109)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999974

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=99.82  E-value=1.7e-21  Score=120.03  Aligned_cols=46  Identities=54%  Similarity=1.006  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          16 EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        16 ~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ....++|++||+|||.++++|++++|+||++||+||+|||||||+|
T Consensus         3 ~~~~s~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~   48 (127)
T 1wyq_A            3 SGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKH   48 (127)
T ss_dssp             CSCCCSTHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHH
Confidence            3468999999999999999999999999999999999999999975

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=99.82  E-value=2.2e-21  Score=118.22  Aligned_cols=45  Identities=49%  Similarity=0.930  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      .+.+++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus         5 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~   49 (118)
T 1bhd_A            5 QQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH   49 (118)
T ss_dssp             CCSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999975

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=99.82  E-value=2.3e-21  Score=117.76  Aligned_cols=45  Identities=44%  Similarity=0.865  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ..++++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus         4 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~   48 (116)
T 1wyl_A            4 GSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRL   48 (116)
T ss_dssp             SCSSSHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999974

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=99.80  E-value=1.9e-20  Score=115.57  Aligned_cols=44  Identities=39%  Similarity=0.800  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ..++|++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus         5 ~~~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~   48 (128)
T 2d87_A            5 SSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNF   48 (128)
T ss_dssp             SCCHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999974

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.1e-20  Score=115.07  Aligned_cols=45  Identities=42%  Similarity=0.902  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      .+.+++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus         6 ~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~   50 (119)
T 2d89_A            6 SGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHF   50 (119)
T ss_dssp             SCCCCHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999974

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=99.79  E-value=7.2e-21  Score=116.35  Aligned_cols=46  Identities=48%  Similarity=0.855  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          16 EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        16 ~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      .+.++++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus         5 ~~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~   50 (121)
T 2d88_A            5 SSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRY   50 (121)
T ss_dssp             CCSCSSSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHh
Confidence            3568899999999999999999999999999999999999999974

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=99.71  E-value=6.4e-19  Score=120.76  Aligned_cols=56  Identities=48%  Similarity=0.897  Sum_probs=50.8

Q ss_pred             EEeeeeecCC-CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGA-EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~-~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |||++|.+++ ...++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus       174 ~~i~~i~~~g~~~~~s~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~  230 (296)
T 3f7p_A          174 FQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRH  230 (296)
T ss_dssp             HTTTTCCCSSCCTTSCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHH
T ss_pred             cceeeeeccCCcccCCHHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHH
Confidence            8999987754 2468999999999999999999999999999999999999999974

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.70  E-value=4.8e-19  Score=118.26  Aligned_cols=53  Identities=45%  Similarity=0.861  Sum_probs=48.9

Q ss_pred             EEeeeeecCCCCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |+|++++++   .++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus       129 ~~i~~i~~~---~~~~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~  181 (254)
T 1wku_A          129 FAIQDISVE---ETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRH  181 (254)
T ss_dssp             HHTTTCEET---TEEHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred             Hhhcccccc---cccHHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHH
Confidence            888888764   57899999999999999999999999999999999999999974

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.70  E-value=1.9e-18  Score=114.25  Aligned_cols=56  Identities=46%  Similarity=0.893  Sum_probs=50.5

Q ss_pred             EEeeeeecCC-CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGA-EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~-~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |+|+++.+++ ...++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus       118 ~~i~~i~~~g~~~~~~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~  174 (245)
T 1sh5_A          118 FQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRH  174 (245)
T ss_dssp             HTTTTCCCTTCCSSCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTT
T ss_pred             hcccccccccccccCCHHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHH
Confidence            8888887654 2457999999999999999999999999999999999999999986

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.60  E-value=5.4e-17  Score=119.39  Aligned_cols=53  Identities=43%  Similarity=0.842  Sum_probs=49.2

Q ss_pred             EEeeeeecCCCCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |+|++++++   .++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus       110 ~~~~~~~~~---~~~~~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~  162 (863)
T 1sjj_A          110 FAIQDISVE---ETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRH  162 (863)
T ss_dssp             CCCCCCCCC---CCCSTTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTT
T ss_pred             Hhhcccchh---ccchHHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHh
Confidence            899988764   57889999999999999999999999999999999999999986

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=99.59  E-value=7.2e-17  Score=109.38  Aligned_cols=53  Identities=23%  Similarity=0.523  Sum_probs=42.0

Q ss_pred             EEeeeeecCCC-----CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGAE-----PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~~-----~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |||+.+..+.+     .+.+++++||+|||.+   |++++|+||++||+||+|||||||+|
T Consensus       151 ~~i~~l~~~~e~~~~~~~~s~k~~LL~W~n~~---~~~~~I~nFs~sw~DG~af~aLi~~~  208 (272)
T 3hoc_A          151 YSISMPMWDEEEDEEAKKQTPKQRLLGWIQNK---LPQLPITNFSRDWQSGRALGALVDSC  208 (272)
T ss_dssp             HHTTCC------------CCHHHHHHHHHHHH---CTTSCCCCSSGGGTTSHHHHHHHHHH
T ss_pred             HhhhhhhccccccccccccCHHHHHHHHHHhh---CCCCCCCChhhcccchHHHHHHHHHh
Confidence            88887755432     3578999999999997   46899999999999999999999974

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=99.57  E-value=1.5e-16  Score=110.32  Aligned_cols=53  Identities=26%  Similarity=0.530  Sum_probs=43.9

Q ss_pred             EEeeeeecCCC-----CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGAE-----PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~~-----~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |||+.+..+.+     ...+++++||+|||.++   ++++|+||++||+||+|||||||+|
T Consensus       121 ~~i~~~~~~~~~~~~~~~~~~k~~LL~W~~~~~---~~~~v~nF~~sw~DG~af~aLi~~~  178 (347)
T 4b7l_A          121 YSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PYLPITNFNQNWQDGKALGALVDSC  178 (347)
T ss_dssp             HHTTSSCCC-------CCCCHHHHHHHHHHHHC---TTSCCCCSSGGGTTSHHHHHHHHHH
T ss_pred             HhhhhhhcccccchhhhhhhHHHHHHHHHHhhC---CCcccCCCCCCccchHHHHHHHHHh
Confidence            88877644332     35789999999999986   5678999999999999999999974

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=99.57  E-value=2.3e-16  Score=104.58  Aligned_cols=53  Identities=26%  Similarity=0.530  Sum_probs=44.2

Q ss_pred             EEeeeeecCCC-----CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGAE-----PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~~-----~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |||+.+..+.+     .+.+++++||+|||.+.   ++++|+||++||+||+|||||||+|
T Consensus       124 ~~i~~~~~~~~~~~~~~~~~~~~~LL~W~~~~~---~~~~v~nFs~s~~dG~a~~aLi~~~  181 (245)
T 2wa7_A          124 YSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PYLPITNFNQNWQDGKALGALVDSC  181 (245)
T ss_dssp             HHTTSSCCSSCC----CCCCHHHHHHHHHHHHS---TTSCCCCSSGGGTTSHHHHHHHHHH
T ss_pred             HcccccccccccccccccccHHHHHHHHHHHhC---CCCCCCCCcccchhhHHHHHHHHHH
Confidence            77776644432     35799999999999986   5688999999999999999999974

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.56  E-value=9.6e-16  Score=101.51  Aligned_cols=56  Identities=38%  Similarity=0.754  Sum_probs=46.5

Q ss_pred             EEeeeeecCC---CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGA---EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~---~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |||+++..+.   ....+++++||+|||.++++|++++|+||++||+||+|||||||+|
T Consensus       118 ~~i~~~~~e~~~~~~~~~~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~  176 (246)
T 1dxx_A          118 WQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSH  176 (246)
T ss_dssp             HTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhcccccHHHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHH
Confidence            6666653321   1245789999999999999999999999999999999999999974

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.35  E-value=1.7e-13  Score=91.83  Aligned_cols=41  Identities=20%  Similarity=0.490  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHHHhhcC--CCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          19 VSARDALLKWARRTTS--KYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        19 ~sak~~LL~W~q~~~~--~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      .+++++||+|||++++  +|+.  |+||++||+||+|||||||+|
T Consensus       167 ~s~~~~LL~W~n~~l~~~g~~~--I~nF~~s~~DG~a~~aLi~~~  209 (275)
T 1aoa_A          167 LSPEELLLRWANFHLENSGWQK--INNFSADIKDSKAYFHLLNQI  209 (275)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCC--CSCSSTTTTTSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcCCCc--chhhhhhhhhhHHHHHHHHHH
Confidence            5899999999999764  4543  999999999999999999974

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.35  E-value=2.5e-13  Score=97.38  Aligned_cols=43  Identities=21%  Similarity=0.419  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHhhcC-CCCCeeecCCC-CCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTTS-KYPGVRVSDFT-SSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~~-~y~~v~i~~fs-~Sw~dG~af~aLih~~   61 (61)
                      ..++++ ||.|||++++ .|++++|+||+ +||+||+|||||||+|
T Consensus       407 ~~~~~~-LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi~~~  451 (513)
T 1rt8_A          407 TLSDSD-MVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGI  451 (513)
T ss_dssp             CCCHHH-HHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHH
T ss_pred             cCCHHH-HHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHHHHh
Confidence            467765 9999999987 58899999999 8999999999999974

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.34  E-value=9.9e-14  Score=99.47  Aligned_cols=43  Identities=21%  Similarity=0.521  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHHHhhc--CCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTT--SKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~--~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      +.++++.||+|||.++  ++|+ ++|+||++||+||+|||||||+|
T Consensus       159 ~~~~~~~LL~W~n~~l~~~g~~-~~V~nFs~s~~DG~a~~aLl~~~  203 (513)
T 1rt8_A          159 RLPPEKILLRWFNYHLKAANWP-RTVSNFSKDVSDGENYTVLLNQL  203 (513)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCS-CCCSCSSGGGTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhcCCC-cCcccchhhhhccHHHHHHHHHH
Confidence            3688999999999876  4675 89999999999999999999964

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.30  E-value=4.3e-13  Score=95.91  Aligned_cols=42  Identities=21%  Similarity=0.405  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHhhcCC-CCCeeecCCC-CCcccchhhhhhhhcC
Q psy3342          20 SARDALLKWARRTTSK-YPGVRVSDFT-SSWRDGLAFNAIIHRN   61 (61)
Q Consensus        20 sak~~LL~W~q~~~~~-y~~v~i~~fs-~Sw~dG~af~aLih~~   61 (61)
                      .++++||.|||+++++ +++++|+||+ +||+||+|||||||+|
T Consensus       397 ~~~~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~  440 (506)
T 1pxy_A          397 MTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAV  440 (506)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhhhcCCccccCCCCcccccchHHHHHHHHhh
Confidence            4578999999999976 4589999999 8999999999999975

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.14  E-value=1.2e-11  Score=88.52  Aligned_cols=43  Identities=23%  Similarity=0.457  Sum_probs=37.7

Q ss_pred             CCCHHHHHHHHHHhhc--CCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTT--SKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~--~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ..++++.||+|||.++  ++|+ ++|+||++||+||++||+|||+|
T Consensus       150 ~~~~~~~LL~W~n~~l~~~g~~-~~v~nFs~s~~DG~a~~~Ll~~~  194 (506)
T 1pxy_A          150 RLPPEKVLLKWMNFHLKKGGYK-KTVSNFSADLKDAQAYAFLLNVL  194 (506)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCC-SCCCCSSTTTTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhcCCC-ccCccccccccchHHHHHHHHHh
Confidence            3689999999999865  4674 89999999999999999999964

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=98.99  E-value=1.2e-10  Score=71.81  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=35.6

Q ss_pred             CHHHHHHHHHHhhcCC-CCCeeecCCC-CCcccchhhhhhhhc
Q psy3342          20 SARDALLKWARRTTSK-YPGVRVSDFT-SSWRDGLAFNAIIHR   60 (61)
Q Consensus        20 sak~~LL~W~q~~~~~-y~~v~i~~fs-~Sw~dG~af~aLih~   60 (61)
                      -.++.||+|||.+++. +.+++|+||+ +||+||++||+|||.
T Consensus         7 i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~   49 (124)
T 1wjo_A            7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDA   49 (124)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHH
Confidence            3468899999999875 4457899999 999999999999995

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=96.52  E-value=0.0014  Score=39.84  Aligned_cols=37  Identities=14%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      +++...|++...+.+ ++.|+|+.++.+||+.+|.|+-
T Consensus        24 ~ktft~WiN~~L~~~-~~~v~dL~~Dl~DGv~L~~Lle   60 (131)
T 2vzc_A           24 KKTLITFVNKHLNKL-NLEVTELETQFADGVYLVLLMG   60 (131)
T ss_dssp             HHHHHHHHHHHHGGG-TCCCCCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCcccCHHHHcccHHHHHHHHH
Confidence            677899999987766 5689999999999999999873

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=94.83  E-value=0.015  Score=39.03  Aligned_cols=37  Identities=16%  Similarity=0.478  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      |+++..|++...++. +..|+|+-.+.+||+.+|.|+-
T Consensus        49 kktft~WiN~~L~~~-~~~V~dL~~DL~DGv~L~~Lle   85 (272)
T 3hoc_A           49 QNTFTRWCNEHLKCV-SKRIANLQTDLSDGLRLIALLE   85 (272)
T ss_dssp             HHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCCcccHHHHHhhHHHHHHHHH
Confidence            568999999987655 4679999999999999999874

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=94.64  E-value=0.018  Score=37.89  Aligned_cols=38  Identities=18%  Similarity=0.531  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      -++++..|++...++. +..++||-...+||+.+|.|+-
T Consensus        28 q~~~f~~WiN~~L~~~-~~~v~~l~~dl~DGv~L~~Lle   65 (254)
T 1wku_A           28 QRKTFTAWCNSHLRKA-GTQIENIEEDFRNGLKLMLLLE   65 (254)
T ss_dssp             HHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccc-CCCccCHHHHccCHHHHHHHHH
Confidence            3678999999987665 4578999999999999999874

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=94.50  E-value=0.02  Score=39.41  Aligned_cols=37  Identities=16%  Similarity=0.497  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      +++..+|++...++. +..|+|+-.+.+||+.+|.|+-
T Consensus        19 ~ktFt~WiN~~L~~~-~~~V~dL~~Dl~DG~~L~~Lle   55 (347)
T 4b7l_A           19 QNTFTRWCNEHLKSV-NKRIGNLQTDLSDGLRLIALLE   55 (347)
T ss_dssp             HHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcC-CCCcCCHHHHhcCHHHHHHHHH
Confidence            577889999987655 4679999999999999999874

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=94.48  E-value=0.021  Score=37.28  Aligned_cols=39  Identities=15%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      .-++++..|++...++. +..|+|+-...+||+.+|.|+-
T Consensus        20 ~q~~~f~~WiN~~L~~~-~~~v~dl~~dL~DGv~L~~Lle   58 (245)
T 2wa7_A           20 IQQNTFTRWCNEHLKCV-NKRIGNLQTDLSDGLRLIALLE   58 (245)
T ss_dssp             HHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccc-CCCccCHHHHcccHHHHHHHHH
Confidence            34678999999987655 4678999999999999999874

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.23  E-value=0.0054  Score=36.68  Aligned_cols=39  Identities=21%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhhcCCC-CCeeecCCCCCcccchhhhhhhh
Q psy3342          21 ARDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y-~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      -++++..|++...+.. ....|+||....+||..+|.|+-
T Consensus        19 q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle   58 (129)
T 2yrn_A           19 QKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQ   58 (129)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHH
Confidence            3578999999877543 11258999999999999999874

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=94.19  E-value=0.038  Score=35.85  Aligned_cols=39  Identities=21%  Similarity=0.433  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhhcCCC----CCeeecCCCCCcccchhhhhhhh
Q psy3342          21 ARDALLKWARRTTSKY----PGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y----~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      -++++..|++...+..    .+..++|+-...+||+.+|.|+-
T Consensus        13 q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle   55 (245)
T 1sh5_A           13 QKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLE   55 (245)
T ss_dssp             HHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHH
Confidence            4678899999988763    24579999999999999999874

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=93.81  E-value=0.033  Score=37.82  Aligned_cols=37  Identities=22%  Similarity=0.455  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      ++++..|++...+.. +..|+|+-.+.+||+.+|.|+-
T Consensus        75 kktft~WINs~L~~~-~~~V~dL~~DL~DGvvL~~Lle  111 (296)
T 3f7p_A           75 KKTFTKWVNKHLIKA-QRHISDLYEDLRDGHNLISLLE  111 (296)
T ss_dssp             HHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHcccC-CCCcccHHHHHhhHHHHHHHHH
Confidence            578899999887544 3579999999999999999873

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=92.08  E-value=0.073  Score=34.63  Aligned_cols=40  Identities=18%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      .-++++..|++...+....-.++|+-.+.+||+.+|.|+-
T Consensus        16 ~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle   55 (246)
T 1dxx_A           16 VQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLE   55 (246)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHH
Confidence            4577899999987754311268999999999999999874

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=90.55  E-value=0.05  Score=35.92  Aligned_cols=39  Identities=18%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhhcCCCC------Ce--eecCCCCCcccchhhhhhhh
Q psy3342          21 ARDALLKWARRTTSKYP------GV--RVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y~------~v--~i~~fs~Sw~dG~af~aLih   59 (61)
                      .++++..|++..++..+      .+  .|+||-...+||+.+|.|+-
T Consensus        25 q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle   71 (275)
T 1aoa_A           25 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMIN   71 (275)
T ss_dssp             HHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHH
Confidence            36899999999887643      22  47899999999999999874

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=88.71  E-value=0.13  Score=37.88  Aligned_cols=38  Identities=21%  Similarity=0.552  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      -++++..|++...++. +..|+|+-...+||+.+|.|+-
T Consensus         9 q~~~f~~Win~~L~~~-~~~v~~l~~dl~DG~~L~~l~e   46 (863)
T 1sjj_A            9 QRKTFTAWCNSHLRKA-GTQIENIEEDFRDGLKLMLLLE   46 (863)
T ss_dssp             HHHHHHHHHHHHHHHH-CSCCCCCSSTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-CCCccCHHHHhcCHHHHHHHHH
Confidence            4678999999886554 3578999999999999999874

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.82  E-value=0.16  Score=30.80  Aligned_cols=36  Identities=14%  Similarity=0.312  Sum_probs=28.0

Q ss_pred             HHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          23 DALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        23 ~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      .-|+.|++.-.=++   +++|+...+.||..+..|+++|
T Consensus        18 ~el~~WL~~l~Ls~---~~rn~rRDFSdG~lvAEIl~~y   53 (127)
T 2ee7_A           18 HQLYLWVDNIPLSR---PKRNLSRDFSDGVLVAEVIKFY   53 (127)
T ss_dssp             HHHHHHHHHSCCSC---CSSCHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCC---CCCchhhhccchhHHHHHHHHH
Confidence            56889999543333   5788888899999999998875

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=81.01  E-value=0.82  Score=27.50  Aligned_cols=36  Identities=19%  Similarity=0.462  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342          22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR   60 (61)
Q Consensus        22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~   60 (61)
                      ++.+..|....++.-.   ..||-.+-+||..+|-|+.+
T Consensus        19 ~~e~~~WIe~~l~~~~---~~~l~~~L~DGvvLCkL~N~   54 (136)
T 1wyp_A           19 EQELREWIEGVTGRRI---GNNFMDGLKDGIILCEFINK   54 (136)
T ss_dssp             HHHHHHHHHHHTCCCC---CSCTTHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCC---cHHHHHHHccHHhHHHHHHh
Confidence            5789999998886432   36899999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	61
d1bkra_	108	a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens)	6e-18
d1dxxa2	127	a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie	2e-17
d1bhda_	108	a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI	5e-17
d1sh5a2	110	a.40.1.1 (A:128-237) Actin binding domain of plect	6e-17
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	7e-13
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	6e-11
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-11
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	2e-11
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	2e-10
d1wjoa_	124	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	8e-07

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 6e-18
 Identities = 24/41 (58%), Positives = 33/41 (80%)

Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          SA+DALL W +  T+ YP V + +FT+SWRDG+AFNA+IH+
Sbjct: 2  SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHK 42

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (166), Expect = 2e-17
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 7  LISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          ++ +I+ G +   ++   LL W R++T  YP V V +FT+SW DGLA NA+IH 
Sbjct: 4  VMKNIMAGLQ-QTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHS 56

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 5e-17
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 19 VSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           ++   LL W R+TT  Y  V V +FT+SW DGLAFNA++HR
Sbjct: 4  TNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHR 45

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (161), Expect = 6e-17
 Identities = 22/43 (51%), Positives = 32/43 (74%)

Query: 18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
          +++A++ LL W++R    Y G+R  +FT+SWRDG  FNAIIHR
Sbjct: 4  DMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHR 46

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 58.5 bits (141), Expect = 7e-13
 Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 1   MEQWSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDF-TSSWRDGLAFNAIIH 59
           M          +      +S  D +            G ++  F   S   G+    ++H
Sbjct: 382 MRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLH 441

Query: 60  R 60
            
Sbjct: 442 G 442

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 53.1 bits (127), Expect = 6e-11
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 19  VSARDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHR 60
           +     LL+W             VS+F+    DG  +  ++++
Sbjct: 152 LPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQ 194

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.0 bits (132), Expect = 1e-11
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 7   LISDIVMGAEPNVSARDALLKWARRTTSKY-PGVRVSDFTS-SWRDGLAFNAIIHR 60
           L+  +             +L WA R        +++  F   S   GL F  ++  
Sbjct: 378 LLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWA 433

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.6 bits (131), Expect = 2e-11
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 19  VSARDALLKWARR-TTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
           +     LLKW             VS+F++  +D  A+  +++ 
Sbjct: 145 LPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNV 187

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 2e-10
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
          S  + LL+WA          ++++F++  +D  A+  +++
Sbjct: 9  SPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLN 48

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 8e-07
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 20 SARDALLKWARRTTSK-YPGVRVSDFT-SSWRDGLAFNAIIHR 60
             D ++ W  RT S+      +  F   +    LA   +I  
Sbjct: 7  GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDA 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	61
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	99.86
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.37
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.27
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.21
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.19
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.15
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.86
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	96.96
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	96.13
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	87.61
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	85.65

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.4e-23  Score=122.35  Aligned_cols=45  Identities=49%  Similarity=0.996  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      +.+|+|++||.|||+++++|++++|+||++||+||+|||||||+|
T Consensus         3 e~~s~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~   47 (110)
T d1sh5a2           3 EDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRH   47 (110)
T ss_dssp             SSCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999986

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.6e-22  Score=116.85  Aligned_cols=42  Identities=57%  Similarity=1.114  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      |+|++||.|||+++++|++++|+||++||+||+|||||||+|
T Consensus         2 s~k~~LL~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~   43 (108)
T d1bkra_           2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH   43 (108)
T ss_dssp             HHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHH
Confidence            789999999999999999999999999999999999999974

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-21  Score=115.84  Aligned_cols=44  Identities=50%  Similarity=0.953  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      +.++++.||+|||.++++|++++|+||++||+||+|||||||+|
T Consensus         3 ~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~   46 (108)
T d1bhda_           3 QTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH   46 (108)
T ss_dssp             CSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCcCcccCccccccchHHHHHHHHH
Confidence            57899999999999999999999999999999999999999975

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.2e-21  Score=116.73  Aligned_cols=45  Identities=47%  Similarity=0.922  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ...++++.||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus        13 ~~~~~~~~LL~W~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~   57 (127)
T d1dxxa2          13 QQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSH   57 (127)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHhccCCCccccCCccccccHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999975

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-14  Score=82.28  Aligned_cols=44  Identities=18%  Similarity=0.409  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      +.++++.||+||+.+.++++.++|+||++||+||++||+|||.+
T Consensus         7 k~~~E~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~   50 (116)
T d1aoaa2           7 KLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQI   50 (116)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHH
Confidence            57899999999999998887789999999999999999999853

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.27  E-value=8.7e-14  Score=98.23  Aligned_cols=56  Identities=16%  Similarity=0.278  Sum_probs=44.6

Q ss_pred             EEeeeeecCCC---CCCCHHHHHHHHHHhhcCCC-CCeeecCCC-CCcccchhhhhhhhcC
Q psy3342           6 ILISDIVMGAE---PNVSARDALLKWARRTTSKY-PGVRVSDFT-SSWRDGLAFNAIIHRN   61 (61)
Q Consensus         6 fqI~~i~~~~~---~~~sak~~LL~W~q~~~~~y-~~v~i~~fs-~Sw~dG~af~aLih~~   61 (61)
                      |||+.+.....   ...++++.||.|||..++.| ++++|+||+ +||+||+|||+|||+|
T Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~LL~W~~~~~~~~~~~~~I~nF~~~s~~dG~a~~~Li~~~  434 (500)
T d1pxya_         374 HMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAV  434 (500)
T ss_dssp             HHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHH
T ss_pred             HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHhcCCCCccCcCCCCCccccHHHHHHHHhh
Confidence            67765533222   24578999999999999888 689999995 7999999999999975

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.21  E-value=1.1e-12  Score=92.21  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCC-CeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTTSKYP-GVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~~~y~-~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      ..+++++||+|||..+++|. +++|+||++||+||+|||+|||+|
T Consensus       151 ~~s~~~~LL~W~~~~~~~~~~~~~v~nf~~~~~dG~a~~~Li~~~  195 (505)
T d1rt8a_         151 RLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQL  195 (505)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhhcCCCceeccCCccccccHHHHHHHHHH
Confidence            56899999999999997763 789999999999999999999975

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.19  E-value=6.7e-13  Score=93.61  Aligned_cols=44  Identities=20%  Similarity=0.328  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHhhcC-CCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTTS-KYPGVRVSDFTSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~~-~y~~v~i~~fs~Sw~dG~af~aLih~~   61 (61)
                      +.++++.||+||+..++ .+.++.|+||++||+||++||+|||+|
T Consensus       144 ~~s~~~~LL~W~n~~l~~~~~~~~v~nf~~d~~dG~~~~~Ll~~~  188 (500)
T d1pxya_         144 RLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVL  188 (500)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhccccCCCceeecCcCCchhHHHHHHHHHHH
Confidence            46889999999998874 445899999999999999999999964

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=4.9e-12  Score=88.84  Aligned_cols=44  Identities=16%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHHHHhhc-CCCCCeeecCC-CCCcccchhhhhhhhcC
Q psy3342          18 NVSARDALLKWARRTT-SKYPGVRVSDF-TSSWRDGLAFNAIIHRN   61 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~-~~y~~v~i~~f-s~Sw~dG~af~aLih~~   61 (61)
                      ..++++.||.||++.+ +.|++++|+|| ++||+||+|||||||+|
T Consensus       398 ~~~~~~~lL~Wv~~~~~~~~~~~~I~nF~~~s~~DG~a~~~Li~~~  443 (505)
T d1rt8a_         398 KTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGI  443 (505)
T ss_dssp             -CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhccCCCceeeeCCCCCCcccHHHHHHHHHH
Confidence            4578899999999876 45789999999 77999999999999975

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.3e-10  Score=67.89  Aligned_cols=43  Identities=19%  Similarity=0.365  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHHHhhc-CCCCCeeecCCC-CCcccchhhhhhhhc
Q psy3342          18 NVSARDALLKWARRTT-SKYPGVRVSDFT-SSWRDGLAFNAIIHR   60 (61)
Q Consensus        18 ~~sak~~LL~W~q~~~-~~y~~v~i~~fs-~Sw~dG~af~aLih~   60 (61)
                      ..+.++.||.||+.+. +.+..+.|+||+ ++|+||++||+|||.
T Consensus         5 ~~~~e~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~   49 (124)
T d1wjoa_           5 SSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDA   49 (124)
T ss_dssp             CCSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHH
Confidence            3466799999999875 445578999998 799999999999985

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3.8e-05  Score=43.69  Aligned_cols=38  Identities=18%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      +++..+|++...+.-+...++||.++++||.++|.|+.
T Consensus        10 ~~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle   47 (111)
T d1dxxa1          10 KKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLE   47 (111)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHH
Confidence            57899999987754444568999999999999999985

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0003  Score=40.24  Aligned_cols=38  Identities=21%  Similarity=0.446  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhhcCCC----CCeeecCCCCCcccchhhhhhhh
Q psy3342          22 RDALLKWARRTTSKY----PGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        22 k~~LL~W~q~~~~~y----~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      +++..+|++...+..    ++..|+||..+++||..+|.|+.
T Consensus         7 ~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle   48 (120)
T d1sh5a1           7 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLE   48 (120)
T ss_dssp             HHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHH
Confidence            467899999887653    24569999999999999999875

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0004  Score=40.47  Aligned_cols=39  Identities=18%  Similarity=0.440  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhhcCCCCC--------eeecCCCCCcccchhhhhhhh
Q psy3342          21 ARDALLKWARRTTSKYPG--------VRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y~~--------v~i~~fs~Sw~dG~af~aLih   59 (61)
                      -+++...|++...+..+.        .+|+||..+++||+.+|.|+.
T Consensus         5 ek~~f~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle   51 (131)
T d1aoaa1           5 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMIN   51 (131)
T ss_dssp             HHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHH
Confidence            467899999998876432        358999999999999999875

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.61  E-value=0.071  Score=31.30  Aligned_cols=40  Identities=13%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhhcCCCCCe---eecCCCCCcccchhhhhhhhc
Q psy3342          21 ARDALLKWARRTTSKYPGV---RVSDFTSSWRDGLAFNAIIHR   60 (61)
Q Consensus        21 ak~~LL~W~q~~~~~y~~v---~i~~fs~Sw~dG~af~aLih~   60 (61)
                      .++.++.|....++..-+.   ...+|..+-+||..+|-|+.+
T Consensus        10 ~e~~~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~   52 (144)
T d1ujoa_          10 LEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNS   52 (144)
T ss_dssp             HHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHH
Confidence            5778999999887644221   245788889999999999863

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.65  E-value=0.073  Score=31.24  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             HHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342          23 DALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH   59 (61)
Q Consensus        23 ~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih   59 (61)
                      +.+..|+...++.- ...+.||....+||..+|-|+.
T Consensus        14 ~e~~~Wi~~~l~~~-~~~~~dl~~~L~dGv~Lc~L~n   49 (159)
T d1p2xa_          14 DEAKKWIEECLGTD-LGPTSTFEQSLRNGVVLALLVQ   49 (159)
T ss_dssp             HHHHHHHHHHHTSC-CCCGGGHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCChhHHHHHHhhHHHHHHHHH
Confidence            34678999888543 3367899999999999999875