Psyllid ID: psy3356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
ACSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccHHHHHHHHccccccccccccEEcccccccccccccccEccccHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHccccHHccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEcccccccEccccccEEccccccc
Coil and Loop (DISEMBL)
acsskwitspsvtfdiniqknplvfipacvfrfsvenekRFFFfsflfgpllvpqihmrthtgerpfecdvcgkrfaqkstlnthkRVHISYlhvkdkpyhcteceatFSWKQNLEVHMrthtgerpyeceicgkrfsqksacnthkrthipylprvhpkdrpfhcpacegmfttkqnle
Flexible Loop (DISEMBL)
acsskwitspsvtfdiniqknPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAqkstlnthkrvHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRthipylprvhpkDRPFHCPACEGMFTTKQNLE
Low Complexity Region (SEG)
ACSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRffffsflfGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE
Disordered region (IsUnstruct)
*****WITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGM********
Disordered Region (DISOPRED)
ACSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK**L*
Disordered Region (DISEMBL)
ACSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE
Disordered Region (DISPRO)
*CSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ACSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q6NX49	715	Zinc finger protein 544 O	yes	N/A	0.616	0.155	0.508	6e-29
P17025	639	Zinc finger protein 182 O	no	N/A	0.661	0.186	0.444	1e-27
Q5R9S5	620	Zinc finger protein 182 O	yes	N/A	0.661	0.191	0.444	1e-27
Q96RE9	604	Zinc finger protein 300 O	no	N/A	0.661	0.197	0.430	1e-26
Q7Z7L9	614	Zinc finger and SCAN doma	no	N/A	0.666	0.195	0.451	1e-26
Q5RCD9	645	Zinc finger and SCAN doma	no	N/A	0.666	0.186	0.451	2e-26
Q8BI99	563	Zinc finger protein 879 O	no	N/A	0.661	0.211	0.409	4e-26
Q6P560	627	Zinc finger protein 182 O	no	N/A	0.661	0.189	0.430	4e-26
Q5MCW4	686	Zinc finger protein 569 O	no	N/A	0.705	0.185	0.414	5e-26
Q6ZMW2	699	Zinc finger protein 782 O	no	N/A	0.661	0.170	0.454	7e-26

>sp|Q6NX49|ZN544_HUMAN Zinc finger protein 544 OS=Homo sapiens GN=ZNF544 PE=2 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 397 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 451

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 452 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 503

Query: 176 KQNL 179
           K +L
Sbjct: 504 KYDL 507

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|P17025|ZN182_HUMAN Zinc finger protein 182 OS=Homo sapiens GN=ZNF182 PE=1 SV=2

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 78/144 (54%), Gaps = 25/144 (17%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           +H RTHTGE+P+ECDVCGK F QKS L  H+R H       +KP+ C ECE  FS K  L
Sbjct: 419 VHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSG-----EKPFECNECEKAFSQKSYL 473

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP-------------------- 155
            +H R HTGE+PYEC  C K FSQKS    H+RTH    P                    
Sbjct: 474 MLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQ 533

Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
           R+H  ++P+ CP C   F+ K  L
Sbjct: 534 RIHTGEKPYECPVCWKAFSQKSQL 557

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R9S5|ZN182_PONAB Zinc finger protein 182 OS=Pongo abelii GN=ZNF182 PE=2 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 78/144 (54%), Gaps = 25/144 (17%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           +H RTHTGE+P+ECDVCGK F QKS L  H+R H       +KP+ C ECE  FS K  L
Sbjct: 400 VHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSG-----EKPFECNECEKAFSQKSYL 454

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP-------------------- 155
            +H R HTGE+PYEC  C K FSQKS    H+RTH    P                    
Sbjct: 455 MLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQ 514

Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
           R+H  ++P+ CP C   F+ K  L
Sbjct: 515 RIHTGEKPYECPVCWKAFSQKSQL 538

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q96RE9|ZN300_HUMAN Zinc finger protein 300 OS=Homo sapiens GN=ZNF300 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 78/144 (54%), Gaps = 25/144 (17%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           +H RTHTGE+P++C  CGK F+QKS+L  H+RVH       +KPY C+EC   FS K  L
Sbjct: 314 VHQRTHTGEKPYDCSECGKAFSQKSSLIIHQRVHTG-----EKPYECSECGKAFSQKSPL 368

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP-------------------- 155
            +H R HTGE+PYEC  CGK FSQKS    H R H    P                    
Sbjct: 369 IIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHK 428

Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
           R+H  ++P+ C  CE  F+ K  L
Sbjct: 429 RIHTGEKPYKCAQCEEAFSRKTEL 452

Has a transcriptional repressor activity.

Homo sapiens (taxid: 9606)

>sp|Q7Z7L9|ZSCA2_HUMAN Zinc finger and SCAN domain-containing protein 2 OS=Homo sapiens GN=ZSCAN2 PE=2 SV=2

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 15/135 (11%)

Query: 45  SFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
           SF   P L+   H RTHTGE+P+ C  CGK F  +S+LNTH+ +H       +KPY C E
Sbjct: 314 SFSRSPNLI--AHQRTHTGEKPYSCPECGKSFGNRSSLNTHQGIHTG-----EKPYECKE 366

Query: 105 CEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPF 164
           C  +FS+  NL  H R HTGE+PY+C  CG+RFSQ SA  TH+RTH          ++P+
Sbjct: 367 CGESFSYNSNLIRHQRIHTGEKPYKCTDCGQRFSQSSALITHRRTHT--------GEKPY 418

Query: 165 HCPACEGMFTTKQNL 179
            C  C   F+   NL
Sbjct: 419 QCSECGKSFSRSSNL 433

May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q5RCD9|ZSCA2_PONAB Zinc finger and SCAN domain-containing protein 2 OS=Pongo abelii GN=ZSCAN2 PE=2 SV=1

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 15/135 (11%)

Query: 45  SFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
           SF   P L+   H RTHTGE+P+ C  CGK F  +S+LNTH+ +H       +KPY C E
Sbjct: 345 SFSRSPNLI--AHQRTHTGEKPYSCPECGKSFGNRSSLNTHQGIHTG-----EKPYECKE 397

Query: 105 CEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPF 164
           C  +FS+  NL  H R HTGE+PY+C  CG+RFSQ SA  TH+RTH          ++P+
Sbjct: 398 CGESFSYNSNLIRHQRIHTGEKPYKCTDCGQRFSQSSALITHRRTHT--------GEKPY 449

Query: 165 HCPACEGMFTTKQNL 179
            C  C   F+   NL
Sbjct: 450 QCSECGKNFSRSSNL 464

May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q8BI99|ZN879_MOUSE Zinc finger protein 879 OS=Mus musculus GN=Znf879 PE=2 SV=1

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 75/144 (52%), Gaps = 25/144 (17%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ C  CGK F+Q S L  H+R+H       +KPY C EC   FSW   L
Sbjct: 389 IHQRTHTGEKPYACKECGKAFSQSSALTQHQRIHTG-----EKPYKCAECGKAFSWLSRL 443

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP-------------------- 155
            +H R HTGE+PY C+ CGK FS  SA NTH++ H    P                    
Sbjct: 444 NIHHRIHTGEKPYHCKECGKAFSSHSAVNTHRKIHTGEKPYKCSDCEKAFNQSSALIQHQ 503

Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
           R+H  ++PF+C  C   F    +L
Sbjct: 504 RIHTGEKPFNCKVCGKAFRQSSSL 527

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q6P560|ZN182_MOUSE Zinc finger protein 182 OS=Mus musculus GN=Znf182 PE=2 SV=1

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 76/144 (52%), Gaps = 25/144 (17%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           +H R HTGE+P+ECDVCGK F QKS L  H+R H       +KP+ C ECE  FS K  L
Sbjct: 420 VHQRIHTGEKPYECDVCGKTFTQKSNLGVHQRTHSG-----EKPFECNECEKAFSQKSYL 474

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP-------------------- 155
            +H R HTGE+PYEC  C K FSQKS    H+RTH    P                    
Sbjct: 475 MLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQ 534

Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
           R+H  ++P+ C  C   F+ K  L
Sbjct: 535 RIHTGEKPYECLVCWKAFSQKSQL 558

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q5MCW4|ZN569_HUMAN Zinc finger protein 569 OS=Homo sapiens GN=ZNF569 PE=2 SV=1

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 80/152 (52%), Gaps = 25/152 (16%)

Query: 48  FGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEA 107
           F  +    +H+R+HTGE+P+ECD CGK F+Q S LN H R H       +KPY C EC  
Sbjct: 531 FSQIASLTLHLRSHTGEKPYECDKCGKAFSQCSLLNLHMRSHTG-----EKPYVCNECGK 585

Query: 108 TFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP------------ 155
            FS + +L VHMR HTGE+PYEC  CGK FSQ S+   H R H    P            
Sbjct: 586 AFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIRGHTGEKPFDCSKCGKAFSQ 645

Query: 156 --------RVHPKDRPFHCPACEGMFTTKQNL 179
                   R H  ++P+HC  C   F+ K +L
Sbjct: 646 ISSLTLHMRKHTGEKPYHCIECGKAFSQKSHL 677

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 76/132 (57%), Gaps = 13/132 (9%)

Query: 48  FGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEA 107
           FG     + H R HTGE+P++C+ CG+ F+QKS L  H R H       +KPY C EC  
Sbjct: 543 FGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTG-----EKPYQCEECGK 597

Query: 108 TFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP 167
           TF  K NL  H RTHTGE+PYEC  CGK FS+KS    H+RTH          ++P++C 
Sbjct: 598 TFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTG--------EKPYNCN 649

Query: 168 ACEGMFTTKQNL 179
            C   F+ K NL
Sbjct: 650 QCGEAFSQKSNL 661

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
357609605	1280	zinc finger protein [Danaus plexippus]	0.611	0.085	0.565	3e-32
157105982	567	zinc finger protein [Aedes aegypti] gi|1	0.655	0.208	0.539	4e-30
2843171	715	zinc finger protein [Homo sapiens]	0.616	0.155	0.508	2e-27
397491460	1119	PREDICTED: LOW QUALITY PROTEIN: neurotro	0.616	0.099	0.508	2e-27
332857648	710	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.616	0.156	0.508	3e-27
221046280	687	unnamed protein product [Homo sapiens]	0.616	0.161	0.508	3e-27
155722996	715	zinc finger protein 544 [Homo sapiens] g	0.616	0.155	0.508	3e-27
119592974	715	zinc finger protein 544, isoform CRA_a [	0.616	0.155	0.508	3e-27
194384504	687	unnamed protein product [Homo sapiens]	0.616	0.161	0.508	3e-27
158261617	573	unnamed protein product [Homo sapiens]	0.616	0.193	0.508	5e-27

>gi|357609605|gb|EHJ66538.1| zinc finger protein [Danaus plexippus]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 84/122 (68%), Gaps = 12/122 (9%)

Query: 55   QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
            +IH RTHTGERP++CDVC KRFAQKSTLN HKR H     V+ +PY C EC A F+ K  
Sbjct: 1011 EIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHT----VQGRPYQCMECPAAFTCKPY 1066

Query: 115  LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
            LE+HMRTHTGERP+EC++C KRF+QKS  N HK        R+H  +RP+ C  C+  F 
Sbjct: 1067 LEIHMRTHTGERPFECDVCYKRFTQKSTLNIHK--------RIHTGERPYACDICQKRFA 1118

Query: 175  TK 176
             K
Sbjct: 1119 VK 1120

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105982|ref|XP_001649111.1| zinc finger protein [Aedes aegypti] gi|108879937|gb|EAT44162.1| AAEL004444-PA [Aedes aegypti]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 85/128 (66%), Gaps = 10/128 (7%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
           ++HMRTHTGERPF CDVC KRF+QKS+LNTHK++H+ Y  +  KP+ C +C A+F  K  
Sbjct: 109 EVHMRTHTGERPFSCDVCLKRFSQKSSLNTHKKIHMRYWSIH-KPFQCNQCSASFGRKPY 167

Query: 115 LEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGM 172
           LE+H+RTH+GERP+ C  E C KRFSQKS  N HKR H        P  RPF C  C   
Sbjct: 168 LEIHLRTHSGERPFACDREGCDKRFSQKSTLNIHKRVH-------DPNHRPFTCEHCPAT 220

Query: 173 FTTKQNLE 180
           F  K  L+
Sbjct: 221 FCRKPYLD 228

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2843171|gb|AAC01956.1| zinc finger protein [Homo sapiens]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 77/124 (62%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F+W  NL
Sbjct: 397 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFTWNSNL 451

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 452 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHT--------GEKPFKCTQCGKSFSQ 503

Query: 176 KQNL 179
           K +L
Sbjct: 504 KYDL 507

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397491460|ref|XP_003816681.1| PREDICTED: LOW QUALITY PROTEIN: neurotrophin receptor-interacting factor homolog [Pan paniscus]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 664 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 718

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 719 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHT--------GEKPFKCTQCGKSFSQ 770

Query: 176 KQNL 179
           K +L
Sbjct: 771 KYDL 774

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332857648|ref|XP_003316817.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 544 [Pan troglodytes]

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 392 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 446

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 447 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 498

Query: 176 KQNL 179
           K +L
Sbjct: 499 KYDL 502

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221046280|dbj|BAH14817.1| unnamed protein product [Homo sapiens]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 369 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 423

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 424 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 475

Query: 176 KQNL 179
           K +L
Sbjct: 476 KYDL 479

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|155722996|ref|NP_055295.2| zinc finger protein 544 [Homo sapiens] gi|74762345|sp|Q6NX49.1|ZN544_HUMAN RecName: Full=Zinc finger protein 544 gi|45501063|gb|AAH67271.1| Zinc finger protein 544 [Homo sapiens]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 397 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 451

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 452 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 503

Query: 176 KQNL 179
           K +L
Sbjct: 504 KYDL 507

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119592974|gb|EAW72568.1| zinc finger protein 544, isoform CRA_a [Homo sapiens] gi|119592975|gb|EAW72569.1| zinc finger protein 544, isoform CRA_a [Homo sapiens] gi|158256744|dbj|BAF84345.1| unnamed protein product [Homo sapiens] gi|306921387|dbj|BAJ17773.1| zinc finger protein 544 [synthetic construct]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 397 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 451

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 452 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 503

Query: 176 KQNL 179
           K +L
Sbjct: 504 KYDL 507

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194384504|dbj|BAG59412.1| unnamed protein product [Homo sapiens]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 369 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 423

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 424 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 475

Query: 176 KQNL 179
           K +L
Sbjct: 476 KYDL 479

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158261617|dbj|BAF82986.1| unnamed protein product [Homo sapiens]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 13/124 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct: 255 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 309

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
            VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct: 310 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 361

Query: 176 KQNL 179
           K +L
Sbjct: 362 KYDL 365

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
UNIPROTKB|J3KQC8	687	ZNF544 "Zinc finger protein 54	0.616	0.161	0.508	7.7e-30
UNIPROTKB|Q6NX49	715	ZNF544 "Zinc finger protein 54	0.616	0.155	0.508	8.6e-30
UNIPROTKB|F1SCQ3	622	F1SCQ3 "Uncharacterized protei	0.616	0.178	0.467	3e-29
UNIPROTKB|F1MUM4	460	ZNF500 "Uncharacterized protei	0.555	0.217	0.504	7.1e-29
ZFIN|ZDB-GENE-080218-13	260	zgc:175008 "zgc:175008" [Danio	0.622	0.430	0.456	1.5e-28
MGI|MGI:107611	645	Zfp93 "zinc finger protein 93"	0.594	0.165	0.475	1.8e-28
RGD|1561277	196	RGD1561277 "RGD1561277" [Rattu	0.616	0.566	0.451	2.4e-28
UNIPROTKB|F1NNA7	385	ZFP3 "Uncharacterized protein"	0.605	0.283	0.495	3.9e-28
UNIPROTKB|F1M3V5	530	RGD1561277 "Protein RGD1561277	0.616	0.209	0.451	7.3e-28
UNIPROTKB|J9P0A1	463	ZFP2 "Uncharacterized protein"	0.611	0.237	0.455	1e-27

UNIPROTKB|J3KQC8 ZNF544 "Zinc finger protein 544" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 7.7e-30, P = 7.7e-30
 Identities = 63/124 (50%), Positives = 76/124 (61%)

Query:    56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
             IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct:   369 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 423

Query:   116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
              VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct:   424 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 475

Query:   176 KQNL 179
             K +L
Sbjct:   476 KYDL 479

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q6NX49 ZNF544 "Zinc finger protein 544" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 8.6e-30, P = 8.6e-30
 Identities = 63/124 (50%), Positives = 76/124 (61%)

Query:    56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
             IH RTHTGE+P+ECD+CGK F Q+S L TH+R+H       +KPY C EC  +F W  NL
Sbjct:   397 IHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTG-----EKPYQCIECRKSFRWNSNL 451

Query:   116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
              VH R HTGE+PYEC  CGK FSQ     THKRTH          ++PF C  C   F+ 
Sbjct:   452 IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTG--------EKPFKCTQCGKSFSQ 503

Query:   176 KQNL 179
             K +L
Sbjct:   504 KYDL 507

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SCQ3 F1SCQ3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 301 (111.0 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
 Identities = 58/124 (46%), Positives = 72/124 (58%)

Query:    56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
             IH R HTGERP+EC  CGK F+Q  +LN+HK+VH       +KPY C EC  +FS + NL
Sbjct:   276 IHQRVHTGERPYECSECGKSFSQSYSLNSHKKVHTG-----EKPYECRECGKSFSQRSNL 330

Query:   116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
               H R HTGE+PYEC  CGK FSQ  +   H+R        VH  +RP  C  C   F+ 
Sbjct:   331 IQHQRVHTGEKPYECSECGKAFSQNFSLIYHRR--------VHTGERPHQCSECGKSFSR 382

Query:   176 KQNL 179
               +L
Sbjct:   383 SSSL 386

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MUM4 ZNF500 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 57/113 (50%), Positives = 73/113 (64%)

Query:    57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
             H RTHTGERP++C VCGKRF  +S  +TH+RVH       +KPY C EC   FS   +L 
Sbjct:   324 HQRTHTGERPYQCQVCGKRFGDRSNCSTHQRVHTG-----EKPYACAECGKRFSQSSSLV 378

Query:   117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC 169
             +H RTHTGERPY+C++CGKRF+  S  + H+RTH          ++P  CPAC
Sbjct:   379 IHRRTHTGERPYQCQLCGKRFNNSSHFSAHRRTHTG--------EKPHTCPAC 423

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016032 "viral reproduction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-080218-13 zgc:175008 "zgc:175008" [Danio rerio (taxid:7955)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 57/125 (45%), Positives = 77/125 (61%)

Query:    56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
             +HMR HTGE+P+ C+ CG+ F+QK  L TH R+H       +KP+ C +C  +FS K NL
Sbjct:    99 VHMRVHTGEKPYTCEQCGQSFSQKQCLKTHMRIHTG-----EKPFSCKQCGKSFSQKPNL 153

Query:   116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
             ++HMR HTGE+PY CE CGK FSQK +  +H R        +H  +RP+ C  C   F  
Sbjct:   154 DIHMRVHTGEKPYTCEQCGKSFSQKQSFKSHMR--------IHTGERPYTCQQCGKSFRH 205

Query:   176 KQNLE 180
              +NLE
Sbjct:   206 ARNLE 210

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

MGI|MGI:107611 Zfp93 "zinc finger protein 93" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
 Identities = 57/120 (47%), Positives = 75/120 (62%)

Query:    55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
             Q H R HTGE+P++C  CGKRF+  S L+TH+RVH      ++KPY C EC   FS   N
Sbjct:   357 QAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVH-----TEEKPYECNECGKRFSLSGN 411

Query:   115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
             L++H R HTGE+PY+CE CGK FS  S+  +H+R        VH  ++PFHC  C   F+
Sbjct:   412 LDIHQRVHTGEKPYKCEECGKGFSSASSFQSHQR--------VHTGEKPFHCSVCGKNFS 463

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1561277 RGD1561277 "RGD1561277" [Rattus norvegicus (taxid:10116)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 56/124 (45%), Positives = 76/124 (61%)

Query:    56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
             +H +THTGE+P+EC++C   F ++  L  H+RVH       +KPY C EC  TFS K  L
Sbjct:    72 VHQKTHTGEKPYECNICRNAFKRRCDLTIHQRVHTG-----EKPYECKECRKTFSIKSGL 126

Query:   116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
              VH R HTGE+PYEC +CGKRF+QKS  +TH++        +H  ++PF C  C   F+ 
Sbjct:   127 IVHQRIHTGEKPYECNVCGKRFNQKSNLSTHEK--------IHTGEKPFECKDCSKAFSV 178

Query:   176 KQNL 179
             K  L
Sbjct:   179 KSYL 182

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NNA7 ZFP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/117 (49%), Positives = 70/117 (59%)

Query:    56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
             IH R HTGE+P +C VCGKRF   S +  H+R+H       +KPY CTEC  TF    +L
Sbjct:   152 IHRRVHTGEKPHKCQVCGKRFRDSSAIIRHQRIHTG-----EKPYECTECGKTFRQSSSL 206

Query:   116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHI-PYLPRVHPK--DRPFHCPAC 169
               HMRTHTGE+PY+C +CGK FSQ SA  TH+R H    LP  H      P+ C  C
Sbjct:   207 VTHMRTHTGEKPYKCPVCGKSFSQSSALTTHRRIHRGKVLPLYHGSLLPSPYQCAEC 263

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1M3V5 RGD1561277 "Protein RGD1561277" [Rattus norvegicus (taxid:10116)]

 Score = 316 (116.3 bits), Expect = 7.3e-28, P = 7.3e-28
 Identities = 56/124 (45%), Positives = 76/124 (61%)

Query:    56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
             +H +THTGE+P+EC++C   F ++  L  H+RVH       +KPY C EC  TFS K  L
Sbjct:   406 VHQKTHTGEKPYECNICRNAFKRRCDLTIHQRVHTG-----EKPYECKECRKTFSIKSGL 460

Query:   116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
              VH R HTGE+PYEC +CGKRF+QKS  +TH++        +H  ++PF C  C   F+ 
Sbjct:   461 IVHQRIHTGEKPYECNVCGKRFNQKSNLSTHEK--------IHTGEKPFECKDCSKAFSV 512

Query:   176 KQNL 179
             K  L
Sbjct:   513 KSYL 516

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P0A1 ZFP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 56/123 (45%), Positives = 75/123 (60%)

Query:    57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
             H R HTGE+PF+C+VCGK F ++S+L  H+R+H       +KPY C EC  TFS   NL 
Sbjct:   122 HQRIHTGEKPFKCNVCGKHFIERSSLTVHQRIHTG-----EKPYKCNECGKTFSQSMNLT 176

Query:   117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK 176
             VH RTHTGE+PY+C+ CGK F + S+   H+R        +H  ++P+ C  C   FT  
Sbjct:   177 VHQRTHTGEKPYQCKECGKAFRKNSSLIQHER--------IHTGEKPYKCNECGKAFTQS 228

Query:   177 QNL 179
              NL
Sbjct:   229 MNL 231

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NX49	ZN544_HUMAN	No assigned EC number	0.5080	0.6166	0.1552	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	180
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	4e-06
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	3e-05

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 114 NLEVHMRTHTGERPYECEICGKRFSQ 139
           NL  HMRTHTGE+PY+C +CGK FS 
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 55 QIHMRTHTGERPFECDVCGKRFAQ 78
          + HMRTHTGE+P++C VCGK F+ 
Sbjct: 3  RRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.91
KOG3608|consensus	467		99.84
KOG1074|consensus	958		99.76
KOG3608|consensus	467		99.76
KOG1074|consensus	958		99.72
KOG3576|consensus	267		99.69
KOG3576|consensus	267		99.65
KOG3623|consensus	1007		99.57
KOG3623|consensus	1007		99.56
PLN03086	567	PRLI-interacting factor K; Provisional	99.32
PLN03086	567	PRLI-interacting factor K; Provisional	99.29
PHA00733	128	hypothetical protein	99.16
PHA02768	55	hypothetical protein; Provisional	99.12
PHA00733	128	hypothetical protein	98.99
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.81
PHA02768	55	hypothetical protein; Provisional	98.77
KOG3993|consensus	500		98.66
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.65
KOG3993|consensus	500		98.49
PHA00616	44	hypothetical protein	98.4
PHA00732	79	hypothetical protein	98.29
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.26
PHA00616	44	hypothetical protein	98.23
PHA00732	79	hypothetical protein	98.13
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.03
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.99
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.83
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.82
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.76
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.73
KOG2231|consensus	669		97.67
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.61
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.47
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.41
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.37
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.34
smart00355	26	ZnF_C2H2 zinc finger.	97.14
PRK04860	160	hypothetical protein; Provisional	97.07
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.94
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.86
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.81
smart00355	26	ZnF_C2H2 zinc finger.	96.73
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.45
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.4
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.25
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.18
KOG2231|consensus	669		96.13
KOG1146|consensus	1406		96.03
PRK04860	160	hypothetical protein; Provisional	95.98
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.24
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.72
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.61
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.12
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	94.06
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	93.65
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	93.42
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.66
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	92.64
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.49
KOG2482|consensus	423		91.96
KOG2893|consensus	341		91.93
COG1592	166	Rubrerythrin [Energy production and conversion]	91.74
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	91.37
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	90.9
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	90.86
KOG4173|consensus	253		90.51
KOG1146|consensus	1406		90.38
KOG1280|consensus	381		90.2
KOG4173|consensus	253		90.02
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.0
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.93
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	89.8
COG4049	65	Uncharacterized protein containing archaeal-type C	89.8
KOG2186|consensus	276		89.74
PHA00626	59	hypothetical protein	89.41
KOG2893|consensus	341		89.37
KOG2482|consensus	423		89.32
KOG2186|consensus	276		88.48
COG5236	493	Uncharacterized conserved protein, contains RING Z	88.35
COG4049	65	Uncharacterized protein containing archaeal-type C	88.09
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	87.21
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.8
smart00531	147	TFIIE Transcription initiation factor IIE.	86.54
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	86.43
COG5048	467	FOG: Zn-finger [General function prediction only]	86.07
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	85.7
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	85.26
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	84.7
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.49
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	83.69
KOG2071|consensus	579		83.11
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	81.54
PRK06266	178	transcription initiation factor E subunit alpha; V	80.67

>KOG2462|consensus

Probab=99.96  E-value=1.1e-30  Score=178.76  Aligned_cols=130  Identities=35%  Similarity=0.688  Sum_probs=117.7

Q ss_pred             cCCcccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCC---CCCcccccchhhccChHHHHHHHHhccCCCcCC
Q psy3356          20 KNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTG---ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVK   96 (180)
Q Consensus        20 ~~~~~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~   96 (180)
                      ..+.++|+.||+.+.               +...|.+|.++|-.   .+.+.|++|++.|.+-..|..|+++|       
T Consensus       127 ~~~r~~c~eCgk~ys---------------T~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH-------  184 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYS---------------TSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTH-------  184 (279)
T ss_pred             cCCceeccccccccc---------------cccccchhhcccccccccccccCCCCCceeeehHHHhhHhhcc-------
Confidence            445667777777777               99999999998854   56799999999999999999999987       


Q ss_pred             CcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCc
Q psy3356          97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK  176 (180)
Q Consensus        97 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~  176 (180)
                      ..+..|.+||+.|...+.|+.|+++|+|+|||.|+.|++.|.++++|+.|+++        |.+.|+|+|..|+++|+..
T Consensus       185 ~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQT--------HS~~K~~qC~~C~KsFsl~  256 (279)
T KOG2462|consen  185 TLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQT--------HSDVKKHQCPRCGKSFALK  256 (279)
T ss_pred             CCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHh--------hcCCccccCcchhhHHHHH
Confidence            47899999999999999999999999999999999999999999999999998        7889999999999999987


Q ss_pred             cCC
Q psy3356         177 QNL  179 (180)
Q Consensus       177 ~~L  179 (180)
                      +-|
T Consensus       257 SyL  259 (279)
T KOG2462|consen  257 SYL  259 (279)
T ss_pred             HHH
Confidence            655

>KOG2462|consensus

Probab=99.91  E-value=6.8e-25  Score=150.52  Aligned_cols=127  Identities=31%  Similarity=0.633  Sum_probs=114.8

Q ss_pred             CCCcccccCCceeeeeeccc----CCcccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhc
Q psy3356           1 ACSSKWITSPSVTFDINIQK----NPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRF   76 (180)
Q Consensus         1 ~C~~~f~~~~~~~~~~~~~~----~~~~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f   76 (180)
                      .|+..+.|+.+|..|-..+.    ...+.|++||+.+.               ....|..|+++|.  -+++|.+||+.|
T Consensus       135 eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~Yv---------------SmpALkMHirTH~--l~c~C~iCGKaF  197 (279)
T KOG2462|consen  135 ECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYV---------------SMPALKMHIRTHT--LPCECGICGKAF  197 (279)
T ss_pred             ccccccccccccchhhcccccccccccccCCCCCceee---------------ehHHHhhHhhccC--CCcccccccccc
Confidence            38899999999999977553    44457777776666               9999999999996  578999999999


Q ss_pred             cChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHH
Q psy3356          77 AQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus        77 ~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ...=.|+.|+++|     +|++||.|+.|++.|.+.++|+.|+++|.+.+.|.|..|++.|...+.|.+|...
T Consensus       198 SRPWLLQGHiRTH-----TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  198 SRPWLLQGHIRTH-----TGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cchHHhhcccccc-----cCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            9999999999999     9999999999999999999999999999999999999999999999999999875

>KOG3608|consensus

Probab=99.84  E-value=3.4e-22  Score=141.31  Aligned_cols=167  Identities=22%  Similarity=0.410  Sum_probs=139.8

Q ss_pred             CCCcccccCCceeeeeecccCC-cccccccceeeeecC---------------CeeEeeeecccCCCchhhhHhhhcCCC
Q psy3356           1 ACSSKWITSPSVTFDINIQKNP-LVFIPACVFRFSVEN---------------EKRFFFFSFLFGPLLVPQIHMRTHTGE   64 (180)
Q Consensus         1 ~C~~~f~~~~~~~~~~~~~~~~-~~~c~~C~~~~~~~~---------------~~~~~~C~~~~~~~~~l~~H~~~h~~~   64 (180)
                      +|-..+.+...|..|++.+.+. .+-||.||..|....               ...|..|.|.|++...|..|+..|.  
T Consensus       184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--  261 (467)
T KOG3608|consen  184 MCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--  261 (467)
T ss_pred             hhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--
Confidence            4778889999999999988664 458999999998654               4455569999999999999998885  


Q ss_pred             CCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccc--cccccCChHH
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSA  142 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~  142 (180)
                      ..|+|+.|+.+.....+|..|++.-|    ...++++|..|...+.+.++|.+|...|. +..|.|..  |..+|.+..+
T Consensus       262 n~ykCplCdmtc~~~ssL~~H~r~rH----s~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q  336 (467)
T KOG3608|consen  262 NCYKCPLCDMTCSSASSLTTHIRYRH----SKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQ  336 (467)
T ss_pred             hcccccccccCCCChHHHHHHHHhhh----ccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHH
Confidence            56899999999999999999988765    56899999999999999999999999887 66799977  9999999999


Q ss_pred             HHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCccCC
Q psy3356         143 CNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       143 l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      +.+|++.++.     ..++.+|.|..|++.|++..+|
T Consensus       337 ~~~H~~evhE-----g~np~~Y~CH~Cdr~ft~G~~L  368 (467)
T KOG3608|consen  337 MRRHFLEVHE-----GNNPILYACHCCDRFFTSGKSL  368 (467)
T ss_pred             HHHHHHHhcc-----CCCCCceeeecchhhhccchhH
Confidence            9999987531     2345679999999999987665

>KOG1074|consensus

Probab=99.76  E-value=1e-19  Score=140.92  Aligned_cols=76  Identities=38%  Similarity=0.805  Sum_probs=63.8

Q ss_pred             eeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC---CCcccCCCc
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP---ACEGMFTTK  176 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~---~C~~~F~~~  176 (180)
                      -+|.+|.++..-...|+.|.++|+|++||+|.+|++.|.++.+|..|+.+|-.    .+.-.-.++|+   +|.+.|+..
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka----~p~~R~q~ScP~~~ic~~kftn~  681 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA----KPPARVQFSCPSTFICQKKFTNA  681 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc----CccccccccCCchhhhccccccc
Confidence            48999999999999999999999999999999999999999999999987631    12223458999   999999876


Q ss_pred             cCC
Q psy3356         177 QNL  179 (180)
Q Consensus       177 ~~L  179 (180)
                      -.|
T Consensus       682 V~l  684 (958)
T KOG1074|consen  682 VTL  684 (958)
T ss_pred             ccc
Confidence            554

>KOG3608|consensus

Probab=99.76  E-value=9.1e-20  Score=129.16  Aligned_cols=164  Identities=24%  Similarity=0.491  Sum_probs=125.9

Q ss_pred             CCCcccccCCceeeeeecccCCcccccccceeeeecCCeeEe-----eeecccCCCchhhhHhhhcCCCCCcccccchhh
Q psy3356           1 ACSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFF-----FFSFLFGPLLVPQIHMRTHTGERPFECDVCGKR   75 (180)
Q Consensus         1 ~C~~~f~~~~~~~~~~~~~~~~~~~c~~C~~~~~~~~~~~~~-----~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (180)
                      .|+..|++...+..|+..+.-   .|.+ +..+....+.+-.     .|.+.+..+..|+.|++.|++++...|+.|+..
T Consensus       141 dCe~~F~s~~ef~dHV~~H~l---~cey-d~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~  216 (467)
T KOG3608|consen  141 DCEREFVSIVEFQDHVVKHAL---FCEY-DIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGEL  216 (467)
T ss_pred             hcCCcccCHHHHHHHHHHhhh---hhhh-hhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHH
Confidence            488888888877777653211   1111 1111111111111     367788899999999999999999999999999


Q ss_pred             ccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCC
Q psy3356          76 FAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP  155 (180)
Q Consensus        76 f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  155 (180)
                      |++++.|..|.+..-.   ....+|.|..|-+.|.++..|..|+..|.  ..|+|+.|......+++|..|++.      
T Consensus       217 F~~~tkl~DH~rRqt~---l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~------  285 (467)
T KOG3608|consen  217 FRTKTKLFDHLRRQTE---LNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRY------  285 (467)
T ss_pred             hccccHHHHHHHhhhh---hcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHh------
Confidence            9999999999876521   45668999999999999999999998874  458999999999999999999987      


Q ss_pred             CcCCCCCCcccCCCcccCCCccCCC
Q psy3356         156 RVHPKDRPFHCPACEGMFTTKQNLE  180 (180)
Q Consensus       156 ~~h~~~~~~~C~~C~~~F~~~~~L~  180 (180)
                       -|...+||+|..|+..|.++++|.
T Consensus       286 -rHs~dkpfKCd~Cd~~c~~esdL~  309 (467)
T KOG3608|consen  286 -RHSKDKPFKCDECDTRCVRESDLA  309 (467)
T ss_pred             -hhccCCCccccchhhhhccHHHHH
Confidence             477899999999999998888773

>KOG1074|consensus

Probab=99.72  E-value=1.4e-18  Score=134.74  Aligned_cols=87  Identities=31%  Similarity=0.601  Sum_probs=69.7

Q ss_pred             cCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc---ccCcccCCh
Q psy3356          36 ENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT---ECEATFSWK  112 (180)
Q Consensus        36 ~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~---~C~~~~~~~  112 (180)
                      ...+.|-+|.++..-+..|+.|++.|.+++||+|.+|++.|.++.+|+.|+..|.... .....+.|+   +|-+.|...
T Consensus       603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p-~~R~q~ScP~~~ic~~kftn~  681 (958)
T KOG1074|consen  603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKP-PARVQFSCPSTFICQKKFTNA  681 (958)
T ss_pred             CCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCc-cccccccCCchhhhccccccc
Confidence            3477788899998899999999999999999999999999999999999999885422 223456666   677777776


Q ss_pred             hhHHHHHhhcC
Q psy3356         113 QNLEVHMRTHT  123 (180)
Q Consensus       113 ~~l~~H~~~h~  123 (180)
                      -.+..|++.|.
T Consensus       682 V~lpQhIriH~  692 (958)
T KOG1074|consen  682 VTLPQHIRIHL  692 (958)
T ss_pred             ccccceEEeec
Confidence            66666666654

>KOG3576|consensus

Probab=99.69  E-value=7e-18  Score=111.22  Aligned_cols=113  Identities=27%  Similarity=0.561  Sum_probs=90.7

Q ss_pred             cCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhH
Q psy3356          36 ENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL  115 (180)
Q Consensus        36 ~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l  115 (180)
                      .....|.+|+|.|+....|.+|++-|...+.+.|..|+++|...-+|++|+++|     +|..||+|..|++.|+..-.|
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rth-----tgvrpykc~~c~kaftqrcsl  189 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTH-----TGVRPYKCSLCEKAFTQRCSL  189 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccc-----cCccccchhhhhHHHHhhccH
Confidence            345667777888878888888888888888888888888888888888888888     888888888888888888888


Q ss_pred             HHHHhhcCC-----------CCceeccccccccCChHHHHHHHHHcCCC
Q psy3356         116 EVHMRTHTG-----------ERPYECEICGKRFSQKSACNTHKRTHIPY  153 (180)
Q Consensus       116 ~~H~~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  153 (180)
                      ..|++.-++           .+.|.|..||..-.....+..|++.|+|+
T Consensus       190 eshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  190 ESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            888865443           35588888888888888888888887654

>KOG3576|consensus

Probab=99.65  E-value=3.6e-17  Score=107.86  Aligned_cols=106  Identities=32%  Similarity=0.627  Sum_probs=90.9

Q ss_pred             CCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHH
Q psy3356          63 GERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSA  142 (180)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  142 (180)
                      +...|.|.+|++.|.....|.+|++-|     ...+.+.|..||+.|.+..+|.+|.++|+|.+||+|..|++.|..+-+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch-----~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcs  188 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCH-----SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCS  188 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhc-----cHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhcc
Confidence            345699999999999999999999998     788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCC---CCcCCCCCCcccCCCcccC
Q psy3356         143 CNTHKRTHIPYL---PRVHPKDRPFHCPACEGMF  173 (180)
Q Consensus       143 l~~H~~~h~~~~---~~~h~~~~~~~C~~C~~~F  173 (180)
                      |..|++.-|+-.   .-....++.|.|..||.+-
T Consensus       189 leshl~kvhgv~~~yaykerr~kl~vcedcg~t~  222 (267)
T KOG3576|consen  189 LESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTS  222 (267)
T ss_pred             HHHHHHHHcCchHHHHHHHhhhheeeecccCCCC
Confidence            999988644211   0011246789999999763

>KOG3623|consensus

Probab=99.57  E-value=1.8e-15  Score=116.42  Aligned_cols=100  Identities=29%  Similarity=0.716  Sum_probs=85.6

Q ss_pred             cccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCC-------------CCceecccc
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG-------------ERPYECEIC  133 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-------------~~~~~C~~C  133 (180)
                      .+|++|.+.+...+.|+.|++.-|.   ..+..+.|..|..+|.+...|.+|+..|..             .+-|+|.+|
T Consensus       211 ltcpycdrgykrltslkeHikyrhe---kne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtEC  287 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHE---KNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTEC  287 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHh---hCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccccc
Confidence            6899999999999999999876543   345568899999999999999999988743             234999999


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCcc
Q psy3356         134 GKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQ  177 (180)
Q Consensus       134 ~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~  177 (180)
                      ++.|..+-.|..|+|+        |.|||||.|+-|+++|+-..
T Consensus       288 gKAFKfKHHLKEHlRI--------HSGEKPfeCpnCkKRFSHSG  323 (1007)
T KOG3623|consen  288 GKAFKFKHHLKEHLRI--------HSGEKPFECPNCKKRFSHSG  323 (1007)
T ss_pred             chhhhhHHHHHhhhee--------ecCCCCcCCcccccccccCC
Confidence            9999999999999995        88999999999999998654

>KOG3623|consensus

Probab=99.56  E-value=4.9e-16  Score=119.43  Aligned_cols=116  Identities=30%  Similarity=0.634  Sum_probs=97.1

Q ss_pred             cCCcccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcC--CCCCcccccchhhccChHHHHHHHHhccCC-----
Q psy3356          20 KNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHT--GERPFECDVCGKRFAQKSTLNTHKRVHISY-----   92 (180)
Q Consensus        20 ~~~~~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-----   92 (180)
                      ..+..+|++|+..+.               ...+|+.|++.-+  .+..|.|..|..+|...+.|.+|+..|.+-     
T Consensus       207 fsqlltcpycdrgyk---------------rltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~  271 (1007)
T KOG3623|consen  207 FSQLLTCPYCDRGYK---------------RLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAI  271 (1007)
T ss_pred             hhhhhcchhHHHHHH---------------HHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccc
Confidence            344557777776666               8899999987543  455699999999999999999999988542     


Q ss_pred             ---CcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356          93 ---LHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus        93 ---~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                         .....+.++|..|++.|..+..|..|++.|.|++||.|+.|++.|....++..||...
T Consensus       272 sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  272 SLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             cccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccccc
Confidence               1123456999999999999999999999999999999999999999999999998753

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.32  E-value=3.5e-12  Score=98.06  Aligned_cols=126  Identities=18%  Similarity=0.394  Sum_probs=89.3

Q ss_pred             CcccccccceeeeecC-----------CeeEee--eecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHh
Q psy3356          22 PLVFIPACVFRFSVEN-----------EKRFFF--FSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRV   88 (180)
Q Consensus        22 ~~~~c~~C~~~~~~~~-----------~~~~~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (180)
                      ....|+.|.+..+..+           ...|..  |+..|. ...+..|         +.|+.|++.|. ...|..|+..
T Consensus       406 ~~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~~  474 (567)
T PLN03086        406 DTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMKV  474 (567)
T ss_pred             CeEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHHh
Confidence            3447888888777544           222332  666662 2333333         57999988885 5678889887


Q ss_pred             ccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccC----------ChHHHHHHHHHcCCCCCCcC
Q psy3356          89 HISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFS----------QKSACNTHKRTHIPYLPRVH  158 (180)
Q Consensus        89 ~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~~h  158 (180)
                      +|       .++.|+ |+..+ ....|..|+..|...+++.|+.|+..|.          ....|..|...         
T Consensus       475 ~H-------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~---------  536 (567)
T PLN03086        475 FH-------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI---------  536 (567)
T ss_pred             cC-------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh---------
Confidence            62       678888 98654 5688888988888889999999998884          23478888775         


Q ss_pred             CCCCCcccCCCcccCCCc
Q psy3356         159 PKDRPFHCPACEGMFTTK  176 (180)
Q Consensus       159 ~~~~~~~C~~C~~~F~~~  176 (180)
                      .|.+++.|..|++.|..+
T Consensus       537 CG~rt~~C~~Cgk~Vrlr  554 (567)
T PLN03086        537 CGSRTAPCDSCGRSVMLK  554 (567)
T ss_pred             cCCcceEccccCCeeeeh
Confidence            378889999999887654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.29  E-value=7.6e-12  Score=96.24  Aligned_cols=129  Identities=20%  Similarity=0.346  Sum_probs=103.3

Q ss_pred             CCceeeeeecccCCcccccc--cceeeeecC---CeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHH
Q psy3356           9 SPSVTFDINIQKNPLVFIPA--CVFRFSVEN---EKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLN   83 (180)
Q Consensus         9 ~~~~~~~~~~~~~~~~~c~~--C~~~~~~~~---~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   83 (180)
                      ...+..|..........|+.  |+..|....   -+.|..|++.|. ...|..|+.+++  +++.|+ |+..+ ....|.
T Consensus       419 l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~  493 (567)
T PLN03086        419 SRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMV  493 (567)
T ss_pred             hhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHH
Confidence            44566677666666678984  999997443   556778999995 688999999975  789999 99755 668999


Q ss_pred             HHHHhccCCCcCCCcceeccccCcccC----------ChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHH
Q psy3356          84 THKRVHISYLHVKDKPYHCTECEATFS----------WKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus        84 ~H~~~~~~~~~~~~~~~~C~~C~~~~~----------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      .|+..+     .+.+++.|+.|+..+.          ....|..|.... +.+++.|..|++.+..+ .|..|+-.
T Consensus       494 ~H~~th-----Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~  562 (567)
T PLN03086        494 QHQAST-----CPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIA  562 (567)
T ss_pred             hhhhcc-----CCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHH
Confidence            999888     7889999999999884          235788998885 88999999999998665 47888765

>PHA00733 hypothetical protein

Probab=99.16  E-value=6.3e-11  Score=75.14  Aligned_cols=85  Identities=21%  Similarity=0.336  Sum_probs=69.4

Q ss_pred             CCCCcccccchhhccChHHHHHH--HHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCCh
Q psy3356          63 GERPFECDVCGKRFAQKSTLNTH--KRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQK  140 (180)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H--~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  140 (180)
                      .++++.|.+|+..+.....|..+  +..+.  ...+..++.|+.|++.|.....|..|+..+  ..+|.|..|++.|...
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~--~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLL--TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNT  112 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhc--ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCH
Confidence            45779999999999988777776  22221  124578899999999999999999999876  3569999999999999


Q ss_pred             HHHHHHHHHcC
Q psy3356         141 SACNTHKRTHI  151 (180)
Q Consensus       141 ~~l~~H~~~h~  151 (180)
                      ..|..|+...|
T Consensus       113 ~sL~~H~~~~h  123 (128)
T PHA00733        113 DSTLDHVCKKH  123 (128)
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>PHA02768 hypothetical protein; Provisional

Probab=99.12  E-value=5.6e-11  Score=62.72  Aligned_cols=43  Identities=26%  Similarity=0.566  Sum_probs=36.3

Q ss_pred             ceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCccCC
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      .|.|+.||+.|.....|..|+++|        +  ++|+|..|++.|++.++|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H--------~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKH--------N--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhc--------C--CcccCCcccceeccccee
Confidence            378999999999999999999974        3  688899999999888776

>PHA00733 hypothetical protein

Probab=98.99  E-value=2.2e-10  Score=72.66  Aligned_cols=75  Identities=21%  Similarity=0.350  Sum_probs=60.8

Q ss_pred             CCCcceeccccCcccCChhhHHHH--H---hhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVH--M---RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H--~---~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      +..+.+.|.+|...+.....|..+  +   ..+.+.+||.|+.|++.|.+...|..|++.        +  +.+|.|+.|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~--------h--~~~~~C~~C  105 (128)
T PHA00733         36 PEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRY--------T--EHSKVCPVC  105 (128)
T ss_pred             hhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhc--------C--CcCccCCCC
Confidence            456788999999888887776665  2   133457899999999999999999999986        2  356999999


Q ss_pred             cccCCCccCC
Q psy3356         170 EGMFTTKQNL  179 (180)
Q Consensus       170 ~~~F~~~~~L  179 (180)
                      ++.|...+.|
T Consensus       106 gK~F~~~~sL  115 (128)
T PHA00733        106 GKEFRNTDST  115 (128)
T ss_pred             CCccCCHHHH
Confidence            9999987765

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.81  E-value=1.8e-09  Score=48.87  Aligned_cols=24  Identities=38%  Similarity=0.940  Sum_probs=16.2

Q ss_pred             HHHHHHHcCCCCCCcCCCCCCcccCCCcccCC
Q psy3356         143 CNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT  174 (180)
Q Consensus       143 l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~  174 (180)
                      |..|+++        |++++||.|+.|+++|.
T Consensus         2 l~~H~~~--------H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRT--------HTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHH--------HSSSSSEEESSSSEEES
T ss_pred             HHHHhhh--------cCCCCCCCCCCCcCeeC
Confidence            5667665        56677777777777665

...

>PHA02768 hypothetical protein; Provisional

Probab=98.77  E-value=3.3e-09  Score=56.04  Aligned_cols=43  Identities=16%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHH
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSAC  143 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  143 (180)
                      .|.|+.||+.|.....|..|++.|+  ++++|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            4567777777777777777777776  567777777777655443

>KOG3993|consensus

Probab=98.66  E-value=4.9e-09  Score=76.91  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             cCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccC
Q psy3356          36 ENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHIS   91 (180)
Q Consensus        36 ~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   91 (180)
                      .+++.|..|...|.+...|.+|.-.......|+|++|++.|.-..+|..|++.|.+
T Consensus       265 iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKP  320 (500)
T KOG3993|consen  265 IGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKP  320 (500)
T ss_pred             HHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCC
Confidence            34556666777777999999996544444569999999999999999999999864

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.65  E-value=2.2e-08  Score=45.26  Aligned_cols=25  Identities=72%  Similarity=1.362  Sum_probs=19.5

Q ss_pred             hHHHHHhhcCCCCceeccccccccC
Q psy3356         114 NLEVHMRTHTGERPYECEICGKRFS  138 (180)
Q Consensus       114 ~l~~H~~~h~~~~~~~C~~C~~~f~  138 (180)
                      +|..|++.|.+++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4677888888888888888888775

...

>KOG3993|consensus

Probab=98.49  E-value=5e-08  Score=71.78  Aligned_cols=80  Identities=29%  Similarity=0.672  Sum_probs=69.0

Q ss_pred             cccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCC----------------------
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG----------------------  124 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~----------------------  124 (180)
                      |.|..|...|...-.|.+|.-.-     .....|+|+.|+++|.-..+|..|.+.|--                      
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~R-----IV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~  342 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPR-----IVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV  342 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCe-----eEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence            89999999999999999997543     345679999999999999999999998731                      


Q ss_pred             -----------CCceeccccccccCChHHHHHHHHHcC
Q psy3356         125 -----------ERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       125 -----------~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                                 +..|.|..|++.|....-|..|+-+|+
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence                       123999999999999999999988876

>PHA00616 hypothetical protein

Probab=98.40  E-value=1.3e-07  Score=47.58  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             ceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      ||+|+.||+.|....+|..|++.        |.|++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~--------~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS--------VHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH--------hcCCCccceeE
Confidence            46666677777777777777665        44556666554

>PHA00732 hypothetical protein

Probab=98.29  E-value=6.8e-07  Score=51.69  Aligned_cols=45  Identities=29%  Similarity=0.507  Sum_probs=31.7

Q ss_pred             ceeccccCcccCChhhHHHHHhh-cCCCCceeccccccccCChHHHHHHHHH
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRT-HTGERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ++.|..|++.|.....|..|++. |.   ++.|+.|++.|.   .+..|+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            35688888888888888888774 43   257888888876   36666654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.26  E-value=1.8e-06  Score=46.35  Aligned_cols=50  Identities=28%  Similarity=0.499  Sum_probs=26.1

Q ss_pred             cccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhc
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h  122 (180)
                      |.||.|++ ..+...|..|....|.   ...+.+.|++|...+.  .+|..|+..+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~---~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHR---SESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCc---CCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            56666666 3445566666555443   1233456666655322  2555555443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.23  E-value=5.3e-07  Score=45.41  Aligned_cols=32  Identities=22%  Similarity=0.463  Sum_probs=15.7

Q ss_pred             eeccccCcccCChhhHHHHHhhcCCCCceecc
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      |+|+.||+.|....++..|+..|++.+++.|+
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            44455555555555555555555544444443

>PHA00732 hypothetical protein

Probab=98.13  E-value=1.9e-06  Score=49.83  Aligned_cols=48  Identities=23%  Similarity=0.520  Sum_probs=37.7

Q ss_pred             CcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcC
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      ||.|.+|++.|.+...|..|++.+|    .   ++.|+.|++.|.   .+..|..+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H----~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH----T---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc----C---CCccCCCCCEeC---ChhhhhcccC
Confidence            5789999999999999999988532    2   247999999987   5777876543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.03  E-value=4.2e-06  Score=36.52  Aligned_cols=22  Identities=55%  Similarity=1.026  Sum_probs=15.9

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      |.|+.|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777777777777777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.99  E-value=1.3e-05  Score=42.98  Aligned_cols=49  Identities=18%  Similarity=0.376  Sum_probs=36.8

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCC--CCceeccccccccCChHHHHHHHHHc
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTG--ERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|.||.|++ ..+...|..|....+.  .+.+.|++|...+.  .+|..|+..+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            478999999 5667888999865443  35688999998654  4888898874

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.83  E-value=1.2e-05  Score=35.06  Aligned_cols=22  Identities=45%  Similarity=1.020  Sum_probs=11.6

Q ss_pred             cccccchhhccChHHHHHHHHh
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRV   88 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~   88 (180)
                      |+|++|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3455555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.82  E-value=1.9e-05  Score=34.56  Aligned_cols=23  Identities=52%  Similarity=1.041  Sum_probs=15.1

Q ss_pred             eeccccccccCChHHHHHHHHHc
Q psy3356         128 YECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.|+.|++.|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            56777777777777777777654

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.76  E-value=2.6e-05  Score=47.35  Aligned_cols=73  Identities=21%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             ccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHH
Q psy3356          68 ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHK  147 (180)
Q Consensus        68 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  147 (180)
                      +|..|+..|.+...|..|+...|...    .+     ....+.....+..++.... ...+.|..|+..|.+...|..|+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~----~~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm   70 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD----IP-----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHM   70 (100)
T ss_dssp             ----------------------------------------------------------SSEEBSSSS-EESSHHHHHHHH
T ss_pred             Cccccccccccccccccccccccccc----cc-----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHH
Confidence            37778888887777888876554321    11     0011112223333333221 22588888888888888888888


Q ss_pred             HHc
Q psy3356         148 RTH  150 (180)
Q Consensus       148 ~~h  150 (180)
                      +.+
T Consensus        71 ~~~   73 (100)
T PF12756_consen   71 RSK   73 (100)
T ss_dssp             HHT
T ss_pred             cCc
Confidence            864

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.73  E-value=2.3e-05  Score=35.59  Aligned_cols=24  Identities=58%  Similarity=1.122  Sum_probs=18.2

Q ss_pred             ceeccccccccCChHHHHHHHHHc
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ||.|..|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            467888888888888888887654

>KOG2231|consensus

Probab=97.67  E-value=7.2e-05  Score=59.33  Aligned_cols=120  Identities=20%  Similarity=0.275  Sum_probs=84.0

Q ss_pred             cccccceee-eecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccch---------hhccChHHHHHHHHhccCCCc
Q psy3356          25 FIPACVFRF-SVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCG---------KRFAQKSTLNTHKRVHISYLH   94 (180)
Q Consensus        25 ~c~~C~~~~-~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~---------~~f~~~~~l~~H~~~~~~~~~   94 (180)
                      +|.+|+..+ ...+..+|.+| ..|.....|+.|+...++  .+.|..|-         ...-+...|..|++.-.+--.
T Consensus       101 ~C~~C~~~~~~~~~~~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~  177 (669)
T KOG2231|consen  101 SCHICDRRFRALYNKKECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDE  177 (669)
T ss_pred             hcCccccchhhhcccCCCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccc
Confidence            899999998 45668889999 888899999999954332  23344332         222344678888775432000


Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc------ccccCChHHHHHHHHHcC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC------GKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~h~  151 (180)
                      .-.....|..|...|.+...|.+|+..++    |.|..|      +..|.....|..|.+.+|
T Consensus       178 s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  178 SCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            11224679999999999999999998665    455555      456788899999988765

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.61  E-value=4.7e-05  Score=33.25  Aligned_cols=23  Identities=52%  Similarity=1.089  Sum_probs=11.6

Q ss_pred             cccccchhhccChHHHHHHHHhc
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.|++|+..|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555555543

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.47  E-value=6.1e-05  Score=54.04  Aligned_cols=56  Identities=23%  Similarity=0.665  Sum_probs=41.0

Q ss_pred             CCceeccc--cccccCChHHHHHHHHHcC--------CCC---CCcCCCCCCcccCCCcccCCCccCCC
Q psy3356         125 ERPYECEI--CGKRFSQKSACNTHKRTHI--------PYL---PRVHPKDRPFHCPACEGMFTTKQNLE  180 (180)
Q Consensus       125 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~--------~~~---~~~h~~~~~~~C~~C~~~F~~~~~L~  180 (180)
                      ++||+|++  |.+.+.....|..|+..-|        |..   ...-...|||.|++|+++|..-..|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLK  415 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLK  415 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccce
Confidence            48899976  9999999999999976332        110   01122459999999999998877764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.41  E-value=5.9e-05  Score=54.12  Aligned_cols=72  Identities=24%  Similarity=0.611  Sum_probs=46.3

Q ss_pred             CCCCccccc--chhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCCh
Q psy3356          63 GERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQK  140 (180)
Q Consensus        63 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  140 (180)
                      +++||+|++  |.+.+.....|+-|+..-|...-..+.|  -+            ..+...-...+||.|++|++.++..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p--~p------------~~~~~F~~~~KPYrCevC~KRYKNl  411 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP--SP------------EKMNIFSAKDKPYRCEVCDKRYKNL  411 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC--Cc------------cccccccccCCceeccccchhhccC
Confidence            358999998  9999999999999987543211011111  00            0111112346788888888888888


Q ss_pred             HHHHHHHH
Q psy3356         141 SACNTHKR  148 (180)
Q Consensus       141 ~~l~~H~~  148 (180)
                      ..|..|+.
T Consensus       412 NGLKYHr~  419 (423)
T COG5189         412 NGLKYHRK  419 (423)
T ss_pred             ccceeccc
Confidence            88877764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.37  E-value=0.00019  Score=32.46  Aligned_cols=23  Identities=43%  Similarity=0.817  Sum_probs=11.4

Q ss_pred             eeccccCcccCChhhHHHHHhhc
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h  122 (180)
                      +.|..|++.|.+...|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            44555555555555555554443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.34  E-value=0.00019  Score=43.45  Aligned_cols=72  Identities=22%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             EeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHh
Q psy3356          41 FFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR  120 (180)
Q Consensus        41 ~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~  120 (180)
                      |.+|+..|.....|..||...++...   +. ...+.....+..++..      .....+.|..|+..|.+...|..|+.
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~---~~-~~~l~~~~~~~~~~~~------~~~~~~~C~~C~~~f~s~~~l~~Hm~   71 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDI---PD-QKYLVDPNRLLNYLRK------KVKESFRCPYCNKTFRSREALQEHMR   71 (100)
T ss_dssp             ---------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccc---cc-cccccccccccccccc------ccCCCCCCCccCCCCcCHHHHHHHHc
Confidence            55666666699999999866543221   11 1111223333333332      12336899999999999999999998


Q ss_pred             hc
Q psy3356         121 TH  122 (180)
Q Consensus       121 ~h  122 (180)
                      .+
T Consensus        72 ~~   73 (100)
T PF12756_consen   72 SK   73 (100)
T ss_dssp             HT
T ss_pred             Cc
Confidence            65

>smart00355 ZnF_C2H2 zinc finger

Probab=97.14  E-value=0.00039  Score=30.71  Aligned_cols=23  Identities=57%  Similarity=0.983  Sum_probs=19.6

Q ss_pred             eeccccccccCChHHHHHHHHHc
Q psy3356         128 YECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            57888999999999999998864

>PRK04860 hypothetical protein; Provisional

Probab=97.07  E-value=0.00044  Score=45.66  Aligned_cols=42  Identities=21%  Similarity=0.575  Sum_probs=34.4

Q ss_pred             CceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCccCC
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      -+|.|. |+.   ....+.+|.++        |+++++|.|..|+..|....++
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri--------~~g~~~YrC~~C~~~l~~~~~~  159 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRV--------VRGEAVYRCRRCGETLVFKGEQ  159 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHH--------hcCCccEECCCCCceeEEeccc
Confidence            369998 987   66678899886        7899999999999998876554

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.94  E-value=0.00049  Score=30.39  Aligned_cols=22  Identities=36%  Similarity=0.863  Sum_probs=16.8

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      |.|..|+..|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5677888888888888888764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.86  E-value=0.00076  Score=29.49  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=13.1

Q ss_pred             eeccccccccCChHHHHHHHHHc
Q psy3356         128 YECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.|+.|..... ...|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            56677776666 66677776654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.81  E-value=0.0017  Score=33.58  Aligned_cols=20  Identities=30%  Similarity=0.645  Sum_probs=6.6

Q ss_pred             cccccchhhccChHHHHHHH
Q psy3356          67 FECDVCGKRFAQKSTLNTHK   86 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~   86 (180)
                      -+|++|+..+.+..+|..|+
T Consensus        25 atCP~C~a~~~~srnLrRHl   44 (54)
T PF09237_consen   25 ATCPICGAVIRQSRNLRRHL   44 (54)
T ss_dssp             EE-TTT--EESSHHHHHHHH
T ss_pred             CCCCcchhhccchhhHHHHH
Confidence            33333333333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.73  E-value=0.0015  Score=28.71  Aligned_cols=23  Identities=48%  Similarity=0.963  Sum_probs=14.7

Q ss_pred             cccccchhhccChHHHHHHHHhc
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.|+.|++.|.....|..|+..|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            35666666666666666666643

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.45  E-value=0.0038  Score=32.35  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=24.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERP  127 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~  127 (180)
                      ..+.|-.|+.|+..+....+|.+|+...++.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            567889999999999999999999988887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.40  E-value=0.0026  Score=27.71  Aligned_cols=22  Identities=32%  Similarity=0.677  Sum_probs=10.9

Q ss_pred             cccccchhhccChHHHHHHHHhc
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |+|+.|+.... ...|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            34555555555 55555555543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.25  E-value=0.0041  Score=27.32  Aligned_cols=20  Identities=35%  Similarity=0.753  Sum_probs=10.1

Q ss_pred             eccccCcccCChhhHHHHHh
Q psy3356         101 HCTECEATFSWKQNLEVHMR  120 (180)
Q Consensus       101 ~C~~C~~~~~~~~~l~~H~~  120 (180)
                      .|..|+..|.+...+..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            45555555555555555543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.18  E-value=0.001  Score=30.00  Aligned_cols=21  Identities=29%  Similarity=0.741  Sum_probs=16.7

Q ss_pred             eeccccccccCChHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKR  148 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~  148 (180)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            578888888888888887765

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231|consensus

Probab=96.13  E-value=0.0054  Score=49.13  Aligned_cols=125  Identities=20%  Similarity=0.361  Sum_probs=83.3

Q ss_pred             cccccCCceeeeeecccCCcccccccceeeeecCCeeEeeeecccCCCchhhhHhhhc-CCCC----CcccccchhhccC
Q psy3356           4 SKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTH-TGER----PFECDVCGKRFAQ   78 (180)
Q Consensus         4 ~~f~~~~~~~~~~~~~~~~~~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h-~~~~----~~~C~~C~~~f~~   78 (180)
                      ..|.+...|..|+...+... .|..|     ..+...+.++.+.| +...|..|+..- .++.    --.|..|...|..
T Consensus       122 ~~~~s~~~Lk~H~~~~H~~~-~c~lC-----~~~~kif~~e~k~Y-t~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld  194 (669)
T KOG2231|consen  122 TEFKSVENLKNHMRDQHKLH-LCSLC-----LQNLKIFINERKLY-TRAELNLHLMFGDPDDESCRGHPLCKFCHERFLD  194 (669)
T ss_pred             cchhHHHHHHHHHHHhhhhh-ccccc-----cccceeeeeeeehe-hHHHHHHHHhcCCCccccccCCccchhhhhhhcc
Confidence            56678888888887777766 78887     34444556677777 567777776542 2121    1359999999999


Q ss_pred             hHHHHHHHHhccCCCcCCCcceecccc------CcccCChhhHHHHHhhcCCCCceecc--ccc-cccCChHHHHHHHH
Q psy3356          79 KSTLNTHKRVHISYLHVKDKPYHCTEC------EATFSWKQNLEVHMRTHTGERPYECE--ICG-KRFSQKSACNTHKR  148 (180)
Q Consensus        79 ~~~l~~H~~~~~~~~~~~~~~~~C~~C------~~~~~~~~~l~~H~~~h~~~~~~~C~--~C~-~~f~~~~~l~~H~~  148 (180)
                      ...|..|++..|         +.|..|      +..|.....|..|.+..+    |.|.  .|. +.|.....+..+++
T Consensus       195 ~~el~rH~~~~h---------~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  195 DDELYRHLRFDH---------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             HHHHHHhhccce---------eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehhHHHHHHH
Confidence            999999988653         456666      355666778888877655    6665  454 33444434555555

>KOG1146|consensus

Probab=96.03  E-value=0.0029  Score=53.78  Aligned_cols=100  Identities=19%  Similarity=0.380  Sum_probs=71.5

Q ss_pred             CCchhhhHhh-hcCCCCCcccccchhhccChHHHHHHHHhccCC--------------------CcCCCcceeccccCcc
Q psy3356          50 PLLVPQIHMR-THTGERPFECDVCGKRFAQKSTLNTHKRVHISY--------------------LHVKDKPYHCTECEAT  108 (180)
Q Consensus        50 ~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~--------------------~~~~~~~~~C~~C~~~  108 (180)
                      ....+..|+. .+...+.+.|+.|+..|.....|..|++..|..                    +..+.++|.|..|...
T Consensus       448 s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~s  527 (1406)
T KOG1146|consen  448 SKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYS  527 (1406)
T ss_pred             hhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeee
Confidence            3333444432 344457799999999999999999999884431                    2245667889999999


Q ss_pred             cCChhhHHHHHhhcCC-------------------------------------------CCceeccccccccCChHHHHH
Q psy3356         109 FSWKQNLEVHMRTHTG-------------------------------------------ERPYECEICGKRFSQKSACNT  145 (180)
Q Consensus       109 ~~~~~~l~~H~~~h~~-------------------------------------------~~~~~C~~C~~~f~~~~~l~~  145 (180)
                      +..+.+|.+|++....                                           .-.|.|.+|++...-..+|..
T Consensus       528 tttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlri  607 (1406)
T KOG1146|consen  528 TTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRI  607 (1406)
T ss_pred             eecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhcccc
Confidence            9999999999864210                                           012788888888888888888


Q ss_pred             HHHH
Q psy3356         146 HKRT  149 (180)
Q Consensus       146 H~~~  149 (180)
                      |+..
T Consensus       608 hmts  611 (1406)
T KOG1146|consen  608 HMTA  611 (1406)
T ss_pred             cccc
Confidence            8764

>PRK04860 hypothetical protein; Provisional

Probab=95.98  E-value=0.007  Score=40.07  Aligned_cols=39  Identities=33%  Similarity=0.767  Sum_probs=33.5

Q ss_pred             cceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCCh
Q psy3356          98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQK  140 (180)
Q Consensus        98 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  140 (180)
                      -+|.|. |+.   ....+.+|.+.+.++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            369998 987   677889999999999999999999987643

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.24  E-value=0.02  Score=25.24  Aligned_cols=21  Identities=29%  Similarity=0.836  Sum_probs=13.8

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ..|+.|++.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3577777777 55567777653

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.72  E-value=0.011  Score=26.55  Aligned_cols=21  Identities=33%  Similarity=0.817  Sum_probs=12.5

Q ss_pred             eeccccCcccCChhhHHHHHh
Q psy3356         100 YHCTECEATFSWKQNLEVHMR  120 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~  120 (180)
                      |.|..|++.|.+...+..|+.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            346666666666666655554

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.61  E-value=0.031  Score=26.61  Aligned_cols=23  Identities=17%  Similarity=0.626  Sum_probs=18.6

Q ss_pred             ceeccccccccCChHHHHHHHHH
Q psy3356         127 PYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      +|.|+.|+..|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47788888888888888888753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.12  E-value=0.046  Score=40.27  Aligned_cols=133  Identities=17%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             CCcccccCCceeeeeecccCCcccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCC----Ccccccchhhcc
Q psy3356           2 CSSKWITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGER----PFECDVCGKRFA   77 (180)
Q Consensus         2 C~~~f~~~~~~~~~~~~~~~~~~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~----~~~C~~C~~~f~   77 (180)
                      |.+....+..+..|....+... .|.+|-..=.      -+-|....-++..|+.|...-..+.    -=.|..|...|.
T Consensus       159 c~~~C~~~k~lk~H~K~~H~~~-~C~~C~~nKk------~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FY  231 (493)
T COG5236         159 CHRRCGSLKELKKHYKAQHGFV-LCSECIGNKK------DFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFY  231 (493)
T ss_pred             hhhhhhhHHHHHHHHHhhcCcE-EhHhhhcCcc------cCccceeeeecccccccccCCccccCcCCCchhhhccceec
Confidence            5555566667777777777766 7777743211      1112223335566777754322221    125999999999


Q ss_pred             ChHHHHHHHHhccCCCcCCCcceeccccC----cccCChhhHHHHHhhcCCCCceeccc--cc----cccCChHHHHHHH
Q psy3356          78 QKSTLNTHKRVHISYLHVKDKPYHCTECE----ATFSWKQNLEVHMRTHTGERPYECEI--CG----KRFSQKSACNTHK  147 (180)
Q Consensus        78 ~~~~l~~H~~~~~~~~~~~~~~~~C~~C~----~~~~~~~~l~~H~~~h~~~~~~~C~~--C~----~~f~~~~~l~~H~  147 (180)
                      ....|..|.+..      .+.-+.|.+-+    ..|.+...|..|.+..+    |.|.+  |.    ..|.....|+.|+
T Consensus       232 dDDEL~~HcR~~------HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~  301 (493)
T COG5236         232 DDDELRRHCRLR------HEACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHL  301 (493)
T ss_pred             ChHHHHHHHHhh------hhhhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHH
Confidence            999999998874      34555555543    33666777777776433    55532  32    4688999999998


Q ss_pred             HHcC
Q psy3356         148 RTHI  151 (180)
Q Consensus       148 ~~h~  151 (180)
                      ...|
T Consensus       302 ~~~h  305 (493)
T COG5236         302 TRFH  305 (493)
T ss_pred             HHHh
Confidence            6654

>TIGR00622 ssl1 transcription factor ssl1

Probab=94.06  E-value=0.063  Score=33.10  Aligned_cols=48  Identities=19%  Similarity=0.436  Sum_probs=27.2

Q ss_pred             eccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         101 HCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       101 ~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|..|...|........  ..-.....|.|+.|+..|=..-+...|...|
T Consensus        57 ~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhcc
Confidence            37777776654321100  0012234577877877777777777776665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=93.65  E-value=0.24  Score=30.59  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             eec----cccccccCChHHHHHHHHHcC
Q psy3356         128 YEC----EICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       128 ~~C----~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      |.|    ..|++...+...+.+|.+.+|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence            899    999999999999999998754

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=93.42  E-value=0.054  Score=25.63  Aligned_cols=9  Identities=44%  Similarity=1.530  Sum_probs=4.2

Q ss_pred             Cceeccccc
Q psy3356         126 RPYECEICG  134 (180)
Q Consensus       126 ~~~~C~~C~  134 (180)
                      .++.|+.|+
T Consensus        16 ~~~~CP~Cg   24 (33)
T cd00350          16 APWVCPVCG   24 (33)
T ss_pred             CCCcCcCCC
Confidence            344455554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.66  E-value=0.094  Score=25.00  Aligned_cols=11  Identities=27%  Similarity=0.848  Sum_probs=7.6

Q ss_pred             ceecccccccc
Q psy3356         127 PYECEICGKRF  137 (180)
Q Consensus       127 ~~~C~~C~~~f  137 (180)
                      .|.|..||..+
T Consensus         2 ~~~C~~CG~i~   12 (34)
T cd00729           2 VWVCPVCGYIH   12 (34)
T ss_pred             eEECCCCCCEe
Confidence            36788888664

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=92.64  E-value=0.14  Score=24.74  Aligned_cols=33  Identities=24%  Similarity=0.696  Sum_probs=17.8

Q ss_pred             eeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccC
Q psy3356         128 YECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMF  173 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F  173 (180)
                      ..|+.|+..|.-....             +-.+....+|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-------------ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-------------IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-------------CCCCCcEEECCCCCCEe
Confidence            3566666666555442             12233346677776665

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.49  E-value=0.088  Score=24.98  Aligned_cols=22  Identities=23%  Similarity=0.694  Sum_probs=15.1

Q ss_pred             CcccccchhhccChHHHHHHHH
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKR   87 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~   87 (180)
                      +|.|..|+..|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            3567777777777767777754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=91.96  E-value=0.15  Score=37.60  Aligned_cols=112  Identities=15%  Similarity=0.213  Sum_probs=66.5

Q ss_pred             CeeEeeeecccCCCchhhhHhhh--cCCCCC--------cccccchhhccChHHHHHHH--Hhc--cCC--------CcC
Q psy3356          38 EKRFFFFSFLFGPLLVPQIHMRT--HTGERP--------FECDVCGKRFAQKSTLNTHK--RVH--ISY--------LHV   95 (180)
Q Consensus        38 ~~~~~~C~~~~~~~~~l~~H~~~--h~~~~~--------~~C~~C~~~f~~~~~l~~H~--~~~--~~~--------~~~   95 (180)
                      ..+|.+|.+.|+.+.-|..||+.  |....|        |.-++-..+ ...+....+.  .+.  +..        ...
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~-ks~t~~~~e~dret~~d~~E~D~~wsDw~ed  273 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVG-KSWTIVHSEDDRETNEDINETDDTWSDWNED  273 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcC-CccchhhhhhhhhhhccccccccchhhhhcC
Confidence            78888999999999999999874  322211        211111110 1111111111  110  000        001


Q ss_pred             CCcc--eeccccCcccCChhhHHHHHhhcCC---------------------------CCceeccccccccCChHHHHHH
Q psy3356          96 KDKP--YHCTECEATFSWKQNLEVHMRTHTG---------------------------ERPYECEICGKRFSQKSACNTH  146 (180)
Q Consensus        96 ~~~~--~~C~~C~~~~~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H  146 (180)
                      +..+  ..|..|.....+...+..|++.-+.                           ...-.|-.|.-.|.....|..|
T Consensus       274 ~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~h  353 (423)
T KOG2482|consen  274 DAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIH  353 (423)
T ss_pred             CCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhh
Confidence            1222  5899999988889999999875332                           0114688899999999999999


Q ss_pred             HHHc
Q psy3356         147 KRTH  150 (180)
Q Consensus       147 ~~~h  150 (180)
                      +..+
T Consensus       354 m~e~  357 (423)
T KOG2482|consen  354 MVED  357 (423)
T ss_pred             cccc
Confidence            8754

>KOG2893|consensus

Probab=91.93  E-value=0.046  Score=38.11  Aligned_cols=44  Identities=18%  Similarity=0.417  Sum_probs=29.0

Q ss_pred             CeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHH
Q psy3356          38 EKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTH   85 (180)
Q Consensus        38 ~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   85 (180)
                      .-+|++|+..|.....|.+|++.-    -|+|.+|-+...+--.|..|
T Consensus        10 kpwcwycnrefddekiliqhqkak----hfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   10 KPWCWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             Cceeeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceee
Confidence            346777777777777777776553    37787777665554445544

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=91.74  E-value=0.13  Score=34.23  Aligned_cols=23  Identities=35%  Similarity=0.977  Sum_probs=18.1

Q ss_pred             ceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCc
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACE  170 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~  170 (180)
                      .|+|++||+.                     +.|+.|-.||+||
T Consensus       134 ~~vC~vCGy~---------------------~~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT---------------------HEGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc---------------------ccCCCCCcCCCCC
Confidence            5899999855                     4457788899998

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=91.37  E-value=0.2  Score=30.87  Aligned_cols=30  Identities=30%  Similarity=0.770  Sum_probs=18.2

Q ss_pred             eeccccCcccCChhhHHHHHhhcCCCCceeccccccccCCh
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQK  140 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  140 (180)
                      ..|+.||..|-           -.++.|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFY-----------DLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFY-----------DLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhc-----------cCCCCCccCCCCCCccCcc
Confidence            45677776653           3445666677777666544

The function of members of this family is unknown.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=90.90  E-value=0.078  Score=23.60  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=11.0

Q ss_pred             cccccceeeeecCCeeEeeeeccc
Q psy3356          25 FIPACVFRFSVENEKRFFFFSFLF   48 (180)
Q Consensus        25 ~c~~C~~~~~~~~~~~~~~C~~~~   48 (180)
                      .||.|+...+ .+...|..||..|
T Consensus         2 ~CP~C~~~V~-~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVP-ESAKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCch-hhcCcCCCCCCCC
Confidence            4666666554 3333344444443

Several members are annotated as putative helicases.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=90.86  E-value=0.23  Score=24.10  Aligned_cols=34  Identities=26%  Similarity=0.647  Sum_probs=17.8

Q ss_pred             eeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCC
Q psy3356         128 YECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT  174 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~  174 (180)
                      ..|+.|+..|.-..+-             +-.+....+|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~-------------l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK-------------LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH-------------cccCCcEEECCCCCcEee
Confidence            3566666666555431             112334466666666553

>KOG4173|consensus

Probab=90.51  E-value=0.034  Score=37.85  Aligned_cols=76  Identities=24%  Similarity=0.517  Sum_probs=59.1

Q ss_pred             Cccccc--chhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhh-c---------CCCCceecc--
Q psy3356          66 PFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT-H---------TGERPYECE--  131 (180)
Q Consensus        66 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~-h---------~~~~~~~C~--  131 (180)
                      .+.|++  |.+.|........|..+-|     +   -.|.+|.+.|.+...|..|+.. |         -|...|.|-  
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h-----~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvE  150 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLH-----G---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVE  150 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcc-----c---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence            367887  8888888888888876552     2   2599999999999999999853 2         234568894  


Q ss_pred             ccccccCChHHHHHHHHH
Q psy3356         132 ICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       132 ~C~~~f~~~~~l~~H~~~  149 (180)
                      .|+..|.+...-..|+-.
T Consensus       151 gCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  151 GCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             hhhhhhhhhhhhhhHHHH
Confidence            599999999999888877

>KOG1146|consensus

Probab=90.38  E-value=0.17  Score=43.81  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=53.6

Q ss_pred             cccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhh-----------------cCCCCcee
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT-----------------HTGERPYE  129 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~-----------------h~~~~~~~  129 (180)
                      +.|..|++++.....+. ++        .....|.|.+|...|.....|..|.+.                 +....+| 
T Consensus      1261 ~~c~~~~~~~~~~~~~~-~l--------~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~- 1330 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TL--------DVTHRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH- 1330 (1406)
T ss_pred             chhhhccccccCcccee-ec--------ccchhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-
Confidence            44555555554444433 22        123344555555555555555555431                 1122345 


Q ss_pred             ccccccccCChHHHHHHHHHcCCCC----------------CCcCCCCCCcccCCCcccCCCc
Q psy3356         130 CEICGKRFSQKSACNTHKRTHIPYL----------------PRVHPKDRPFHCPACEGMFTTK  176 (180)
Q Consensus       130 C~~C~~~f~~~~~l~~H~~~h~~~~----------------~~~h~~~~~~~C~~C~~~F~~~  176 (180)
                      |..|...|.....|++|+++-+...                ..++..+.-+.|+.|...|...
T Consensus      1331 c~~c~~~~~~~~alqihm~~~~~~~kt~~~~p~~~~~~t~~~tst~~~v~~a~~~~~~~~~es 1393 (1406)
T KOG1146|consen 1331 CLACEVLLSGREALQIHMRSSAHRRKTAPPQPGPPISITNAATSTSAAVAFAGSEARLPHTES 1393 (1406)
T ss_pred             chHHHhhcchhHHHHHHHHHhhhcccCCCCCCCCccccccccccccccccccccccccccccc
Confidence            8888888888888888887543111                1234444557777776666544

>KOG1280|consensus

Probab=90.20  E-value=0.32  Score=35.99  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             cccccccceeeeecCCeeEeeeec------ccCCCchhhhHhhhc----------------------CCCCCcccccchh
Q psy3356          23 LVFIPACVFRFSVENEKRFFFFSF------LFGPLLVPQIHMRTH----------------------TGERPFECDVCGK   74 (180)
Q Consensus        23 ~~~c~~C~~~~~~~~~~~~~~C~~------~~~~~~~l~~H~~~h----------------------~~~~~~~C~~C~~   74 (180)
                      .+.|..|++.--.-..++|..|..      -|.+......|-..|                      .....|+|++|+.
T Consensus         8 ~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~~qSftCPyC~~   87 (381)
T KOG1280|consen    8 GVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFGGEPISHYDPQSFTCPYCGI   87 (381)
T ss_pred             CceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEecCccccccccccccCCcccc
Confidence            458999999888888999997644      233333333332111                      1233589999999


Q ss_pred             hccChHHHHHHHHhccCCCcCCCcceeccccC
Q psy3356          75 RFAQKSTLNTHKRVHISYLHVKDKPYHCTECE  106 (180)
Q Consensus        75 ~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~  106 (180)
                      +-.+...|..|+...|..+.   ....|++|.
T Consensus        88 ~Gfte~~f~~Hv~s~Hpda~---~~~icp~c~  116 (381)
T KOG1280|consen   88 MGFTERQFGTHVLSQHPEAS---TSVICPLCA  116 (381)
T ss_pred             cccchhHHHHHhhhcCcccC---cceeeeccc
Confidence            98889999999887765432   345677665

>KOG4173|consensus

Probab=90.02  E-value=0.32  Score=33.29  Aligned_cols=77  Identities=22%  Similarity=0.370  Sum_probs=44.2

Q ss_pred             eecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCC-----CcCCCcceeccc--cCcccCChhhHH
Q psy3356          44 FSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISY-----LHVKDKPYHCTE--CEATFSWKQNLE  116 (180)
Q Consensus        44 C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-----~~~~~~~~~C~~--C~~~~~~~~~l~  116 (180)
                      |-..|.....+..|..+-++   ..|..|.+.|.+...|..|+..-|..     ...|.-.|.|-+  |+..|.+...-.
T Consensus        87 c~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~Rk  163 (253)
T KOG4173|consen   87 CCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRK  163 (253)
T ss_pred             hHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhh
Confidence            44455555555555544332   24777777777777777776543311     113455577754  777777777777


Q ss_pred             HHHh-hcC
Q psy3356         117 VHMR-THT  123 (180)
Q Consensus       117 ~H~~-~h~  123 (180)
                      .|+. .|.
T Consensus       164 dH~I~~Hk  171 (253)
T KOG4173|consen  164 DHMIRMHK  171 (253)
T ss_pred             hHHHHhcc
Confidence            7763 443

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.00  E-value=0.21  Score=30.76  Aligned_cols=14  Identities=36%  Similarity=0.947  Sum_probs=7.8

Q ss_pred             CCcccCCCcccCCC
Q psy3356         162 RPFHCPACEGMFTT  175 (180)
Q Consensus       162 ~~~~C~~C~~~F~~  175 (180)
                      .|-.|+.||..|.-
T Consensus        25 ~PivCP~CG~~~~~   38 (108)
T PF09538_consen   25 DPIVCPKCGTEFPP   38 (108)
T ss_pred             CCccCCCCCCccCc
Confidence            44556666665543

The function of members of this family is unknown.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.93  E-value=0.27  Score=23.91  Aligned_cols=14  Identities=21%  Similarity=0.562  Sum_probs=7.7

Q ss_pred             eeccccccccCChH
Q psy3356         128 YECEICGKRFSQKS  141 (180)
Q Consensus       128 ~~C~~C~~~f~~~~  141 (180)
                      +.|+.|+..|.-..
T Consensus         3 ~~CP~C~~~~~v~~   16 (38)
T TIGR02098         3 IQCPNCKTSFRVVD   16 (38)
T ss_pred             EECCCCCCEEEeCH
Confidence            45666666555443

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>TIGR00622 ssl1 transcription factor ssl1

Probab=89.80  E-value=0.62  Score=28.82  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=52.7

Q ss_pred             ccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcC-----CCC-------CcccccchhhccChHHHHHHHHhccC
Q psy3356          24 VFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHT-----GER-------PFECDVCGKRFAQKSTLNTHKRVHIS   91 (180)
Q Consensus        24 ~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~-----~~~-------~~~C~~C~~~f~~~~~l~~H~~~~~~   91 (180)
                      |.||.|+...- .-...|.+|+.+.-....|.+-...-.     .+.       .-.|--|...|........-  .   
T Consensus         2 Y~CPrC~skvC-~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~--~---   75 (112)
T TIGR00622         2 YFCPQCRAKVC-ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD--E---   75 (112)
T ss_pred             ccCCCCCCCcc-CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccccc--c---
Confidence            57888877765 334667778877766666666421100     011       11377777777653211100  0   


Q ss_pred             CCcCCCcceeccccCcccCChhhHHHHHhhc
Q psy3356          92 YLHVKDKPYHCTECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        92 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h  122 (180)
                        ......|.|+.|...|-..-++..|...|
T Consensus        76 --~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        76 --LKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             --cccccceeCCCCCCccccccchhhhhhcc
Confidence              02345678888888888777777777665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.80  E-value=0.15  Score=26.90  Aligned_cols=26  Identities=27%  Similarity=0.545  Sum_probs=14.8

Q ss_pred             CCCceeccccccccCChHHHHHHHHH
Q psy3356         124 GERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       124 ~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      |+..+.|+-|+..|....++.+|...
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhH
Confidence            44445566666666666666666543

>KOG2186|consensus

Probab=89.74  E-value=0.31  Score=34.48  Aligned_cols=46  Identities=24%  Similarity=0.626  Sum_probs=29.9

Q ss_pred             cccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHh
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR  120 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~  120 (180)
                      |.|..||.+.... .+..|+...     .+ .-+.|..|+..|.. ..+..|..
T Consensus         4 FtCnvCgEsvKKp-~vekH~srC-----rn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRC-----RN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhc-----cC-CeeEEeeccccccc-chhhhhhh
Confidence            6677777776654 355677665     23 56777777777766 55666654

>PHA00626 hypothetical protein

Probab=89.41  E-value=0.06  Score=28.47  Aligned_cols=14  Identities=36%  Similarity=0.598  Sum_probs=8.8

Q ss_pred             CceeccccccccCC
Q psy3356         126 RPYECEICGKRFSQ  139 (180)
Q Consensus       126 ~~~~C~~C~~~f~~  139 (180)
                      ..|.|+.|++.|..
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            45777777766643

>KOG2893|consensus

Probab=89.37  E-value=0.099  Score=36.53  Aligned_cols=42  Identities=24%  Similarity=0.571  Sum_probs=26.9

Q ss_pred             ccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHH
Q psy3356          68 ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH  118 (180)
Q Consensus        68 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H  118 (180)
                      +|.+|.+.|..+.-|.+|++.         +.++|.+|.+...+-..|..|
T Consensus        12 wcwycnrefddekiliqhqka---------khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA---------KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhhh---------ccceeeeehhhhccCCCceee
Confidence            377777777777777777553         456777776554444444444

>KOG2482|consensus

Probab=89.32  E-value=0.57  Score=34.72  Aligned_cols=142  Identities=17%  Similarity=0.257  Sum_probs=76.7

Q ss_pred             CeeEeeeecccC-CCchhhhHhh-hcC---C------------------CCCcccccchhhccChHHHHHHHHhccCC-C
Q psy3356          38 EKRFFFFSFLFG-PLLVPQIHMR-THT---G------------------ERPFECDVCGKRFAQKSTLNTHKRVHISY-L   93 (180)
Q Consensus        38 ~~~~~~C~~~~~-~~~~l~~H~~-~h~---~------------------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~   93 (180)
                      ...|.||+..+. ....+..|+- .|.   |                  -..+.|-.|.+.|+.+..|+.||+..... .
T Consensus       144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrri  223 (423)
T KOG2482|consen  144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRI  223 (423)
T ss_pred             eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCccc
Confidence            578888887664 4444445532 221   0                  11478999999999999999999754211 1


Q ss_pred             cCCCcce----ec--cccCcccCC-hhhHHHHHhhc-------------CCCCc--eeccccccccCChHHHHHHHHHcC
Q psy3356          94 HVKDKPY----HC--TECEATFSW-KQNLEVHMRTH-------------TGERP--YECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        94 ~~~~~~~----~C--~~C~~~~~~-~~~l~~H~~~h-------------~~~~~--~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .+...-|    .=  ..-++.... ...+.+-....             .+..+  ..|-.|.........|..||++-|
T Consensus       224 nPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  224 NPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVH  303 (423)
T ss_pred             CCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHH
Confidence            0111111    00  001211111 11111000000             01122  589999999998999999999877


Q ss_pred             CCC-------------CC------cCCCCCCcccCCCcccCCCccCC
Q psy3356         152 PYL-------------PR------VHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       152 ~~~-------------~~------~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      .+.             ++      +....+.-.|-.|...|-.+..|
T Consensus       304 e~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l  350 (423)
T KOG2482|consen  304 EFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGL  350 (423)
T ss_pred             HhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchh
Confidence            432             00      11122334578888888877665

>KOG2186|consensus

Probab=88.48  E-value=0.41  Score=33.87  Aligned_cols=48  Identities=25%  Similarity=0.593  Sum_probs=38.6

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHH
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      -+.|..||.... +..+.+|+....+ ..|.|..|+..|.. .++..|..-
T Consensus         3 ~FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kC   50 (276)
T KOG2186|consen    3 FFTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKC   50 (276)
T ss_pred             EEehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhhh
Confidence            478999998754 6678889988877 56999999999988 678888764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.35  E-value=0.41  Score=35.52  Aligned_cols=77  Identities=22%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             Cccccc--chhhccChHHHHHHHHhccCCCcCCCcceeccccC---c------ccCChhhHHHHHhhcCCC----Cceec
Q psy3356          66 PFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECE---A------TFSWKQNLEVHMRTHTGE----RPYEC  130 (180)
Q Consensus        66 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~---~------~~~~~~~l~~H~~~h~~~----~~~~C  130 (180)
                      .|.|+.  |.........|..|.+..|.       .+.|..|-   +      ...+...|..|...-..+    ..-.|
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C  223 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLC  223 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC-------cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchh
Confidence            367876  77777777889999886543       12333331   1      112233444444322211    11246


Q ss_pred             cccccccCChHHHHHHHHH
Q psy3356         131 EICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       131 ~~C~~~f~~~~~l~~H~~~  149 (180)
                      ..|...|.+...|.+|++.
T Consensus       224 ~FC~~~FYdDDEL~~HcR~  242 (493)
T COG5236         224 IFCKIYFYDDDELRRHCRL  242 (493)
T ss_pred             hhccceecChHHHHHHHHh
Confidence            6666666666666666654

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.09  E-value=0.34  Score=25.63  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhcc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVHI   90 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   90 (180)
                      ..++..+.|+-|+..|....+...|+...|
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            345667889999999999888998886554

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=87.21  E-value=0.31  Score=24.39  Aligned_cols=11  Identities=18%  Similarity=0.298  Sum_probs=8.5

Q ss_pred             ccccccceeee
Q psy3356          24 VFIPACVFRFS   34 (180)
Q Consensus        24 ~~c~~C~~~~~   34 (180)
                      |.|+.||..|.
T Consensus         6 y~C~~Cg~~fe   16 (42)
T PF09723_consen    6 YRCEECGHEFE   16 (42)
T ss_pred             EEeCCCCCEEE
Confidence            47888888877

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.80  E-value=0.15  Score=35.66  Aligned_cols=12  Identities=25%  Similarity=0.639  Sum_probs=8.8

Q ss_pred             eeccccccccCC
Q psy3356         128 YECEICGKRFSQ  139 (180)
Q Consensus       128 ~~C~~C~~~f~~  139 (180)
                      ..|+.||.++..
T Consensus        49 ~vCP~CgyA~~~   60 (214)
T PF09986_consen   49 WVCPHCGYAAFE   60 (214)
T ss_pred             EECCCCCCcccc
Confidence            578888887653

>smart00531 TFIIE Transcription initiation factor IIE

Probab=86.54  E-value=1.4  Score=28.80  Aligned_cols=14  Identities=21%  Similarity=0.733  Sum_probs=7.5

Q ss_pred             CceeccccccccCC
Q psy3356         126 RPYECEICGKRFSQ  139 (180)
Q Consensus       126 ~~~~C~~C~~~f~~  139 (180)
                      ..|.|+.|+..|..
T Consensus        98 ~~Y~Cp~C~~~y~~  111 (147)
T smart00531       98 AYYKCPNCQSKYTF  111 (147)
T ss_pred             cEEECcCCCCEeeH
Confidence            34556666555543

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=86.43  E-value=0.44  Score=25.66  Aligned_cols=10  Identities=40%  Similarity=1.434  Sum_probs=6.4

Q ss_pred             CCCcccCCCc
Q psy3356         161 DRPFHCPACE  170 (180)
Q Consensus       161 ~~~~~C~~C~  170 (180)
                      ..+|.|+.||
T Consensus        48 g~~Y~Cp~CG   57 (61)
T COG2888          48 GNPYRCPKCG   57 (61)
T ss_pred             CCceECCCcC
Confidence            3457777776

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=86.07  E-value=0.28  Score=37.52  Aligned_cols=47  Identities=34%  Similarity=0.700  Sum_probs=38.1

Q ss_pred             eeecccCCCchhhhHhh--hcCCC--CCcccc--cchhhccChHHHHHHHHhc
Q psy3356          43 FFSFLFGPLLVPQIHMR--THTGE--RPFECD--VCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        43 ~C~~~~~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~   89 (180)
                      .|...|.....+..|..  .|.++  +++.|+  .|++.|.....+..|...+
T Consensus       294 ~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         294 QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH  346 (467)
T ss_pred             cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc
Confidence            34455558888888988  78888  889999  7999999988888888776

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=85.70  E-value=0.75  Score=29.02  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCCh
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQK  140 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  140 (180)
                      ...|+.|+..|-           -.++.|..|+.||..|...
T Consensus         9 Kr~Cp~cg~kFY-----------DLnk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300         9 KRICPNTGSKFY-----------DLNRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             cccCCCcCcccc-----------ccCCCCccCCCcCCccCcc
Confidence            356777777763           3456777788888776544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=85.26  E-value=2.9  Score=25.73  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=23.0

Q ss_pred             ceec----cccCcccCChhhHHHHHhhcCC
Q psy3356          99 PYHC----TECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        99 ~~~C----~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      .|.|    ..|+..+.+...+.+|+..+++
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3899    9999999999999999987764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=84.70  E-value=1  Score=24.30  Aligned_cols=11  Identities=36%  Similarity=1.132  Sum_probs=7.6

Q ss_pred             CCCcccCCCcc
Q psy3356         161 DRPFHCPACEG  171 (180)
Q Consensus       161 ~~~~~C~~C~~  171 (180)
                      ..+|.|+.||.
T Consensus        46 ~~~Y~CP~CGF   56 (59)
T PRK14890         46 SNPYTCPKCGF   56 (59)
T ss_pred             CCceECCCCCC
Confidence            35688888874

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.49  E-value=1.1  Score=29.74  Aligned_cols=18  Identities=22%  Similarity=0.253  Sum_probs=8.5

Q ss_pred             CceeccccccccCChHHH
Q psy3356         126 RPYECEICGKRFSQKSAC  143 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l  143 (180)
                      .-|.|+.|+..|.....+
T Consensus       108 ~~Y~Cp~c~~r~tf~eA~  125 (158)
T TIGR00373       108 MFFICPNMCVRFTFNEAM  125 (158)
T ss_pred             CeEECCCCCcEeeHHHHH
Confidence            335555555544444443

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=83.69  E-value=0.85  Score=23.51  Aligned_cols=14  Identities=21%  Similarity=0.534  Sum_probs=9.9

Q ss_pred             ccccccceeeeecC
Q psy3356          24 VFIPACVFRFSVEN   37 (180)
Q Consensus        24 ~~c~~C~~~~~~~~   37 (180)
                      +.|..|+..+....
T Consensus         2 y~C~~CgyvYd~~~   15 (47)
T PF00301_consen    2 YQCPVCGYVYDPEK   15 (47)
T ss_dssp             EEETTTSBEEETTT
T ss_pred             cCCCCCCEEEcCCc
Confidence            57888888887433

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>KOG2071|consensus

Probab=83.11  E-value=0.99  Score=36.02  Aligned_cols=16  Identities=31%  Similarity=0.816  Sum_probs=13.5

Q ss_pred             CCCcccCCCcccCCCc
Q psy3356         161 DRPFHCPACEGMFTTK  176 (180)
Q Consensus       161 ~~~~~C~~C~~~F~~~  176 (180)
                      +++..|++|+..|..-
T Consensus       511 e~~~~C~IC~EkFe~v  526 (579)
T KOG2071|consen  511 ERQASCPICQEKFEVV  526 (579)
T ss_pred             ccccCCccccccccee
Confidence            7889999999988653

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=81.54  E-value=0.84  Score=23.28  Aligned_cols=10  Identities=30%  Similarity=1.225  Sum_probs=5.3

Q ss_pred             cccccchhhc
Q psy3356          67 FECDVCGKRF   76 (180)
Q Consensus        67 ~~C~~C~~~f   76 (180)
                      |.|+.|+..+
T Consensus         4 y~C~~CG~~~   13 (46)
T PRK00398          4 YKCARCGREV   13 (46)
T ss_pred             EECCCCCCEE
Confidence            4555555544

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=80.67  E-value=1.6  Score=29.63  Aligned_cols=16  Identities=31%  Similarity=0.569  Sum_probs=7.6

Q ss_pred             ceeccccccccCChHH
Q psy3356         127 PYECEICGKRFSQKSA  142 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~  142 (180)
                      .|.|+.|+..|.....
T Consensus       117 ~Y~Cp~C~~rytf~eA  132 (178)
T PRK06266        117 FFFCPNCHIRFTFDEA  132 (178)
T ss_pred             EEECCCCCcEEeHHHH
Confidence            3555555554444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		6e-25
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		7e-18
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-14
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-15
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-14
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-14
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		5e-07
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-14
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-13
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-13
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-13
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		1e-05
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-13
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		3e-13
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		4e-13
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		5e-13
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		5e-13
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		3e-11
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		3e-11
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		1e-10
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		3e-10
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		4e-06
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		5e-10
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-09
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-07
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		3e-09
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-05
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		6e-09
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-08
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		5e-07
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-08
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		5e-07
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		2e-08
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		3e-08
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-08
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		8e-08
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		1e-07
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		2e-07
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-05
2ct1_A	77	Solution Structure Of The Zinc Finger Domain Of Tra		3e-07
2ct1_A	77	Solution Structure Of The Zinc Finger Domain Of Tra		4e-05
2dlk_A	79	Solution Structure Of The First And The Second Zf-C		1e-06
4gzn_C	60	Mouse Zfp57 Zinc Fingers In Complex With Methylated		2e-05
4gzn_C	60	Mouse Zfp57 Zinc Fingers In Complex With Methylated		2e-04
2ytf_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-05
2ytq_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-05
2en6_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-05
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		3e-05
2eog_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-05
2eof_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-05
1x6h_A	86	Solution Structures Of The C2h2 Type Zinc Finger Do		1e-04
1x6h_A	86	Solution Structures Of The C2h2 Type Zinc Finger Do		8e-04
2eov_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2el4_A	46	Solution Structure Of The 15th Zf-C2h2 Domain From		2e-04
2yrj_A	46	Solution Structure Of The C2h2-Type Zinc Finger Dom		2e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		2e-04
2en1_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		4e-04
2yth_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		4e-04
2epa_A	72	Solution Structure Of The First And Second Zf-C2h2		5e-04
2ena_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-04
2eol_A	42	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
2eml_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
1bbo_A	57	High-Resolution Solution Structure Of The Double Cy		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 71/123 (57%), Gaps = 13/123 (10%)
Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
           H RTHTGE+P++C  CGK F+ K  L  H+R H       +KPY C EC  +FS + NL 
Sbjct: 40  HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG-----EKPYKCPECGKSFSQRANLR 94
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK 176
            H RTHTGE+PY C  CGK FSQ +    H+RTH          ++P+ CP C   F+ +
Sbjct: 95  AHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT--------GEKPYKCPECGKSFSRE 146
Query: 177 QNL 179
            NL
Sbjct: 147 DNL 149

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 64  ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT 123
           E+P++C  CGK F+Q S L  H+R H       +KPY C EC  +FS   +L+ H RTHT
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTG-----EKPYKCPECGKSFSQSSDLQKHQRTHT 56
Query: 124 GERPYECEICGKRFSQKSACNTHKRTH 150
           GE+PY+C  CGK FS+    + H+RTH
Sbjct: 57  GEKPYKCPECGKSFSRSDHLSRHQRTH 83

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPR 156
           +KPY C EC  +FS   NL+ H RTHTGE+PY+C  CGK FSQ S    H+RTH      
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT----- 56
Query: 157 VHPKDRPFHCPACEGMFTTKQNL 179
               ++P+ CP C   F+   +L
Sbjct: 57  ---GEKPYKCPECGKSFSRSDHL 76

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF+QK+ L+TH R+H        KP+ C  C   FS + +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTG-----QKPFQCRICMRNFSQQASLNAHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F+       H + H+
Sbjct: 57  HTGEKPFACDICGRKFATLHTRTRHTKIHL 86

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF+QK+ L+TH R+H        KP+ C  C   FS    L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTG-----QKPFQCRICMRNFSQHTGLNQHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F+     + H + H+
Sbjct: 57  HTGEKPFACDICGRKFATLHTRDRHTKIHL 86

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 67  FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
           F+C +CGK F + STL+TH       +H   +PY C  C   F  K +++ H   HTGE+
Sbjct: 2   FDCKICGKSFKRSSTLSTH-----LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 127 PYECEICGKRFSQKSACNTHKRTH 150
           P++C++CGK FSQ S   TH R H
Sbjct: 57  PHKCQVCGKAFSQSSNLITHSRKH 80

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHP 159
           + C  C  +F     L  H+  H+  RPY C+ CGKRF QKS    H          +H 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--------TFIHT 53
Query: 160 KDRPFHCPACEGMFTTKQNL 179
            ++P  C  C   F+   NL
Sbjct: 54  GEKPHKCQVCGKAFSQSSNL 73

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF+Q  +L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F++      H + H+
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF+  S L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F++      H + H+
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHL 86

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
           ++H R HTGE+PFEC  CGK + +K  L  H+  +   ++  ++ + C+ C+ TF  +  
Sbjct: 24  KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC--MNRSEQVFTCSVCQETFRRRME 81
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTH 146
           L +HM +HTGE PY+C  C ++F QK    +H
Sbjct: 82  LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 23/102 (22%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTH--------------- 146
           C  C   F  K  L+VH R HTGE+P+EC  CGK + +K     H               
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 147 --------KRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
                   +R  +      H  + P+ C +C   F  K++L+
Sbjct: 70  SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
           Q+H R HTGE+P++CD   C +RF++   L  H+R H        KP+ C  C+  FS  
Sbjct: 25  QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-----KPFQCKTCQRKFSRS 79
Query: 113 QNLEVHMRTHTGERPYECE--ICGKRFSQKSACNTHKRTH 150
            +L+ H RTHTGE+P+ C    C K+F++      H   H
Sbjct: 80  DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 98  KPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPY 153
           +P+ C    C   +    +L++H R HTGE+PY+C+   C +RFS+      H+R H   
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 154 LPRVHPKDRPFHCPACEGMFTTKQNLE 180
                   +PF C  C+  F+   +L+
Sbjct: 65  --------KPFQCKTCQRKFSRSDHLK 83

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF++ + L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F++      H + H+
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF++ + L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F++      H + H+
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF++   L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F++      H + H+
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF++   L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 55
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F++      H + H+
Sbjct: 56  HTGEKPFACDICGRKFARSDERKRHTKIHL 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF++   L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
           HTGE+P+ C+ICG++F++      H + H+
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHL 86

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           DKPY C  C+A+F +K NL  H   HTGE+PY C ICG +F++ +   TH R H
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQN 114
           H+ TH G R   C  CGK F + S L  H+ VH       +KP+ CT   C   FS   N
Sbjct: 26  HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG-----EKPFQCTFEGCGKRFSLDFN 79
Query: 115 LEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTH 150
           L  H+R HTG+RPY C  + C K+F+Q +   +H  TH
Sbjct: 80  LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 66  PFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
           P +C+VCGK F++K  L TH R H        KPY C  C+   +   +L  H+R H+ E
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGV-----KPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 126 RPYECEICGKRFSQKSACNTHKRTHI 151
           RP++C+IC       S    H R+H 
Sbjct: 63  RPFKCQICPYASRNSSQLTVHLRSHT 88

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 62  TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           +G++ + C  CGK F  KS  + H  +H+       +PY C  C   F  K +L  HM+ 
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-----RPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 122 HTGERPYECEICGKRFSQKSACNTH 146
           HTG +PYEC IC KRF  + + + H
Sbjct: 60  HTGIKPYECNICAKRFMWRDSFHRH 84

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPR 156
           DK Y C +C  +F+ K   + HM  H G RPY C +CGK+F  K         H+    +
Sbjct: 8   DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKH--------HLVGHMK 58
Query: 157 VHPKDRPFHCPACEGMFTTKQNL 179
           +H   +P+ C  C   F  + + 
Sbjct: 59  IHTGIKPYECNICAKRFMWRDSF 81

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 32/54 (59%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           +KPY C EC   FS    L  H R HTGE+PY+C  CGK FSQ S    H+R H
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHT ERP+ CD+C K F ++  L  H+     Y+H K+KP+ C EC   F   + L
Sbjct: 35  IHERTHTDERPYTCDICHKAFRRQDHLRDHR-----YIHSKEKPFKCQECGKGFCQSRTL 89
Query: 116 EVHMRTH 122
            VH   H
Sbjct: 90  AVHKTLH 96

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
           K + C  C   F+   NL +H RTHT ERPY C+IC K F ++     H+         +
Sbjct: 16  KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY--------I 67
Query: 158 HPKDRPFHCPACEGMFTTKQNL 179
           H K++PF C  C   F   + L
Sbjct: 68  HSKEKPFKCQECGKGFCQSRTL 89

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 62  TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           +G     C++CGK F     LN HK       H  +KPY C  C   F  K  +  H+R+
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHK-----LSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 122 HTGE--RPYECEICGKRFSQKSACNTH 146
           H G   +PY C+ CGK FS+    N H
Sbjct: 58  HDGSVGKPYICQSCGKGFSRPDHLNGH 84

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKD 161
           C  C   F    +L  H  +H+GE+PY C +CG RF +K   + H R+H   +       
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV------G 63
Query: 162 RPFHCPACEGMFTTKQNLE 180
           +P+ C +C   F+   +L 
Sbjct: 64  KPYICQSCGKGFSRPDHLN 82

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
           + Y C EC  +FS   +L  H RTHTGE+PY+C+ CGK F Q+S    H R H    P
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
           + H+RTHTGE+P+ CD   CG +FA+   L  H R H  +     +P+ C +C+  FS  
Sbjct: 25  KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH-----RPFQCQKCDRAFSRS 79
Query: 113 QNLEVHMRTH 122
            +L +HM+ H
Sbjct: 80  DHLALHMKRH 89

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
           C  T++   +L+ H+RTHTGE+PY C+   CG +F++      H R H  +        R
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------R 65
Query: 163 PFHCPACEGMFTTKQNL 179
           PF C  C+  F+   +L
Sbjct: 66  PFQCQKCDRAFSRSDHL 82

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
           + H+RTHTGE+P+ CD   CG +FA+   L  H R H  +     +P+ C +C+  FS  
Sbjct: 24  KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH-----RPFQCQKCDRAFSRS 78
Query: 113 QNLEVHMRTH 122
            +L +HM+ H
Sbjct: 79  DHLALHMKRH 88

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
           C  T++   +L+ H+RTHTGE+PY C+   CG +F++      H R H  +        R
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------R 64
Query: 163 PFHCPACEGMFTTKQNL 179
           PF C  C+  F+   +L
Sbjct: 65  PFQCQKCDRAFSRSDHL 81

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 56  IHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSW 111
           +HMR HTGE+P +C  + C K +++   L TH R H       +KPY C    C   FS 
Sbjct: 57  VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG-----EKPYMCEHEGCSKAFSN 111
Query: 112 KQNLEVHM-RTHTGERPYECEI--CGKRFSQKSACNTHKRT 149
             +   H  RTH+ E+PY C++  C KR++  S+   H +T
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 68  ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGE 125
           EC   GK F  K  L  H RVH       +KP+ C    C   F+  +NL++H RTHTGE
Sbjct: 64  ECPREGKSFKAKYKLVNHIRVHTG-----EKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 126 RPYECEI--CGKRFSQKSACNTHKRTH 150
           +P++CE   C +RF+  S    H   H
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVH 145

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHK 147
           KP+ C  C   FS   +L  H+RTHTGE+P+ C+ICG++F++      H+
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90  ISYLHVKDKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHK 147
           ++Y+  K +PY C    C+  FS    L  H+R HTG++P++C IC + FS+     TH 
Sbjct: 10  LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 148 RTH 150
           RTH
Sbjct: 70  RTH 72

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 57  HMRTHTGERPFECDV--CGKRFAQKSTLNTH-KRVHISYLHVKDKPYHC--TECEATFSW 111
           H  THTGE+ F CD   C  RF  K+ +  H  R H    ++K   Y C    C   F  
Sbjct: 63  HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH----NIKICVYVCHFENCGKAFKK 118
Query: 112 KQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPY 153
              L+VH  +HT + PYEC  E C KRFS  S    H++ H  Y
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 55  QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
           + H+RTHTGE+P++C  + C  RFA+   L  H R H        KP+ C  C  +FS  
Sbjct: 34  KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG-----AKPFQCGVCNRSFSRS 88
Query: 113 QNLEVHMRTH 122
            +L +HM+ H
Sbjct: 89  DHLALHMKRH 98

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
           C   ++   +L+ H+RTHTGE+PY+C  E C  RF++      H R H           +
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG--------AK 74
Query: 163 PFHCPACEGMFTTKQNL 179
           PF C  C   F+   +L
Sbjct: 75  PFQCGVCNRSFSRSDHL 91

>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of Transcriptional Repressor Ctcf Protein Length = 77

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 59  RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKD-KPYHCTECEATFSWKQNLEV 117
           RTH+GE+P+EC +C  RF Q  T+    ++HI   H ++   +HC  C+   + K +L V
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTM----KMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 118 HMR 120
           H+R
Sbjct: 64  HLR 66

>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of Transcriptional Repressor Ctcf Protein Length = 77

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
           RTH+GE+PYEC IC  RF+Q      H       L +       FHCP C+ +   K +L
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMH------ILQKHTENVAKFHCPHCDTVIARKSDL 61

>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2 Domains Of Zinc Finger Protein 692 Length = 79

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 62  TGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEV 117
           +G     CD   CG+ F+ +  LN HK+    Y H+  K + C E  C  +F++K++L+ 
Sbjct: 3   SGSSGMPCDFPGCGRIFSNRQYLNHHKK----YQHIHQKSFSCPEPACGKSFNFKKHLKE 58
Query: 118 HMRTHTGERPYECEICG 134
           HM+ H+  R Y CE  G
Sbjct: 59  HMKLHSDTRDYICEFSG 75

>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna Length = 60

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 64  ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
           ERPF C+ CGK +   S L+ H+R H+ Y     +P  C EC   F  +  +  H++ H
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGY-----RPRSCPECGKCFRDQSEVNRHLKVH 55

>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna Length = 60

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           ++P+ C  C  T+     L  H R H G RP  C  CGK F  +S  N H + H
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55

>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 607- 639) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
           +KP+ C+EC+  F+ K NL VH RTHTGE+P
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40

>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775- 807) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
           +KPY C+EC   FS K  L +HMRTH+GE+P
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40

>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 887- 919) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
           +KPY C EC  TFS K  L  H RTHTGE+P
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           C+ C   F     L +H+RTHTGE+PY+CE C    +QK++   H   H
Sbjct: 7   CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55

>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693- 723) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
           KPY C+EC   F  K  L +HMRTHTGE+P
Sbjct: 9   KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38

>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 411- 441) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
           +KPY C EC+  F+ K NL VH RTHTGE
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38

>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Transcriptional Repressor Ctcf Length = 86

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 59  RTHTGERPFECDVCGKRFAQKSTLNTH-KRVHISYLHVKDKPYHCTECEATFSWKQNLEV 117
           RTHTGE+P+ C  C K F QK  L+ H KR H    +     + C++C  TF+ +  +  
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP--NFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 118 HMRTHTGERPYECEICG 134
           H     G    E E  G
Sbjct: 66  HADNCAGPDGVEGENSG 82

>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Transcriptional Repressor Ctcf Length = 86

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTH-KRTHIP-YLPRVHPKDRPFHCPACEGMFTTKQ 177
           RTHTGE+PY C  C K F QK   + H KR H P ++P        F C  C   FT + 
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA------FVCSKCGKTFTRRN 61
Query: 178 NL 179
            +
Sbjct: 62  TM 63

>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 519- 551) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
           +KPY C++C  +F+WK  L +H + HTGER
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39

>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
           KPY C++C  TFS K  L VH R+HTG +P
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40

>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (781- 813) From Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
           +KPY C EC   F+ K NL  H R HTGE+P
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 63  GERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
           G   + C VC + +   ++L  H  +H       +K Y C  CE  F   +    H   H
Sbjct: 19  GRVYYICIVCKRSYVCLTSLRRHFNIH-----SWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKD 161
           TGER Y+C  CGK F      ++H ++       VH +D
Sbjct: 74  TGERRYQCLACGKSFINYQFMSSHIKS-------VHSQD 105

>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563- 595) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
          E+PF+C+ CGKRF Q S L++H+RVH  
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTG 37

>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479- 511) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
          E+PF+C+ CGKRF Q S L++H+RVH  
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTG 37

>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10 Length = 72

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTH 150
           C  T+    +L+ H RTHTGE+P+ C  + C +RF++    + H+RTH
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 311- 343) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 60 THTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
          + T E+PF CD C K F Q+S LN+H+ +H 
Sbjct: 6  SGTAEKPFRCDTCDKSFRQRSALNSHRMIHT 36

>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 581- 609) Of Human Zinc Finger Protein 268 Length = 42

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
           +KPY CT+C   F  K  L +H RTHTGE
Sbjct: 8   EKPYECTDCGKAFGLKSQLIIHQRTHTGE 36

>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 752- 784) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
           +KPY C+ C   FS +Q+L VH R H+G++P
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40

>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2 Zinc Finger From The Human Enhancer Binding Protein Mbp-1 Length = 57

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 67  FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           + C+ CG R  + S L  H R H        +PYHCT C  +F  K NL  HM++
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDV-----RPYHCTYCNFSFKTKGNLTKHMKS 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-40
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-31
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-40
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-31
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-26
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-40
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-33
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	7e-21
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-40
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-35
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-22
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-39
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-39
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-39
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-26
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-25
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-15
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-38
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-35
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-36
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-32
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-27
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	6e-36
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-16
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-35
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-25
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-23
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-34
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-33
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-26
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-34
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-31
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-21
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-16
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-34
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-27
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-22
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-33
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-33
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-25
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-19
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-11
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	8e-33
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	8e-20
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-32
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-20
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-29
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-29
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-26
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-25
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-29
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-26
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-14
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-29
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-20
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-13
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-27
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-26
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-13
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-27
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	6e-16
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	5e-14
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-26
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-12
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-26
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-21
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-18
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-24
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-14
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-13
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-17
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-19
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-17
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	4e-12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	9e-19
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	8e-12
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-18
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-15
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-15
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	5e-17
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-12
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-16
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	9e-15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-07
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-15
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-14
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-15
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-14
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-15
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-08
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-13
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-15
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-14
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-15
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-13
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-15
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-12
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-14
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-12
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-14
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-13
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-14
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-12
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-14
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	4e-12
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-14
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-12
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-13
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-14
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-13
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-14
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-13
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-14
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	8e-13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-14
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-13
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-14
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-12
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-14
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-14
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-12
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-14
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-14
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-13
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-14
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-13
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-12
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-14
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-13
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-14
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-12
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-14
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-13
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-12
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-14
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-12
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-12
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-14
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-12
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-14
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-12
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	8e-14
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-11
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-13
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-12
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-14
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-11
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-14
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-13
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-14
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-14
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-12
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	9e-14
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	4e-12
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	9e-14
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-12
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	9e-14
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-13
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-13
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-13
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-13
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	8e-13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-12
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-13
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-12
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-13
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-12
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-13
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	9e-12
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-12
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-13
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-11
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-13
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-12
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-13
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-12
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-13
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-11
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-13
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-12
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	2e-13
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	2e-12
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-13
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-12
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-12
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-12
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-12
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-13
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-12
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	3e-13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	4e-13
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-13
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-13
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-13
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-12
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-13
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-12
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-13
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	9e-11
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-13
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-12
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-13
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-12
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-13
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-12
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-13
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-12
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-13
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-12
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-13
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-12
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-13
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-11
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-13
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-12
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-13
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-11
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-13
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-11
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-13
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-12
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-13
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-11
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-13
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-12
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-13
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-12
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	7e-13
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-12
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	9e-12
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-13
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-11
2epa_A	72	Krueppel-like factor 10; transforming growth facto	7e-13
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	7e-06
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	8e-13
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-12
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-13
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-12
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-12
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-12
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-12
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-11
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-12
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-11
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-12
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-11
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-11
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-09
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	5e-11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	5e-11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-10
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	5e-11
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	2e-10
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-10
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-10
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	8e-10
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	9e-10
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	2e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	1e-09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	1e-09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	6e-09
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	1e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	7e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	4e-06
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	3e-08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-06
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	1e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	8e-08
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-06
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-05
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	6e-06
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	2e-04
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	7e-05
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	7e-05
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	3e-04

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score =  131 bits (331), Expect = 2e-40
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 60  THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHM 119
           +     P +C+VCGK F++K  L TH R H        KPY C  C+   +   +L  H+
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTG-----VKPYKCKTCDYAAADSSSLNKHL 56

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           R H+ ERP++C+IC       S    H R+H
Sbjct: 57  RIHSDERPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score =  108 bits (273), Expect = 2e-31
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
           + HMR HTG +P++C  C    A  S+LN H R+     H  ++P+ C  C         
Sbjct: 25  KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-----HSDERPFKCQICPYASRNSSQ 79

Query: 115 LEVHMRTHTGERPYEC 130
           L VH+R+HTG+     
Sbjct: 80  LTVHLRSHTGDSGPSS 95

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score =  131 bits (332), Expect = 2e-40
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
                    ++ F C  CG+ F +   L  H+R H       ++PY C  C   F  + +
Sbjct: 6   SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD-----ERPYTCDICHKAFRRQDH 60

Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           L  H   H+ E+P++C+ CGK F Q      HK  H
Sbjct: 61  LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score =  106 bits (268), Expect = 9e-31
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           IH RTHT ERP+ CD+C K F ++  L  H+ +H      K+KP+ C EC   F   + L
Sbjct: 35  IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-----SKEKPFKCQECGKGFCQSRTL 89

Query: 116 EVHMRTHTGERPYEC 130
            VH   H        
Sbjct: 90  AVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 96.0 bits (240), Expect = 2e-26
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 13/101 (12%)

Query: 79  KSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFS 138
            S  +  +    +      K + C  C   F+   NL +H RTHT ERPY C+IC K F 
Sbjct: 2   SSGSSGGRLPSKT-----KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR 56

Query: 139 QKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
           ++     H+  H         K++PF C  C   F   + L
Sbjct: 57  RQDHLRDHRYIHS--------KEKPFKCQECGKGFCQSRTL 89

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 64.8 bits (159), Expect = 2e-14
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
            H   H+ E+PF+C  CGK F Q  TL  HK +H+     +       
Sbjct: 63  DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM-----QTSSPTAA 105

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score =  131 bits (331), Expect = 5e-40
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 9/100 (9%)

Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
           Q+H R HTGE+P++CD   C +RF++   L  H+R H        KP+ C  C+  FS  
Sbjct: 25  QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG-----VKPFQCKTCQRKFSRS 79

Query: 113 QNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
            +L+ H RTHTGE+P+ C    C K+F++      H   H
Sbjct: 80  DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score =  114 bits (289), Expect = 1e-33
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 62  TGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEV 117
           + +RPF C    C KR+ + S L  H R H       +KPY C   +CE  FS    L+ 
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-----EKPYQCDFKDCERRFSRSDQLKR 56

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           H R HTG +P++C+ C ++FS+     TH RTH
Sbjct: 57  HQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 81.8 bits (203), Expect = 7e-21
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 98  KPYHCTE--CEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPY 153
           +P+ C    C   +    +L++H R HTGE+PY+C+   C +RFS+      H+R H   
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-- 62

Query: 154 LPRVHPKDRPFHCPACEGMFTTKQNL 179
                   +PF C  C+  F+   +L
Sbjct: 63  ------GVKPFQCKTCQRKFSRSDHL 82

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score =  130 bits (330), Expect = 7e-40
 Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
           +H R HTGE+PFEC  CGK + +K  L  H+  +   ++  ++ + C+ C+ TF  +  L
Sbjct: 25  VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC--MNRSEQVFTCSVCQETFRRRMEL 82

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHK-RTH 150
            +HM +HTGE PY+C  C ++F QK    +H  + H
Sbjct: 83  RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score =  119 bits (301), Expect = 2e-35
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 61  HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR 120
            +G    EC  C K+F  K  L  H R H       +KP+ C +C   +  K+NL  H  
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTG-----EKPFECPKCGKCYFRKENLLEHEA 56

Query: 121 ---THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQ 177
               +  E+ + C +C + F ++     H  +H          + P+ C +C   F  K+
Sbjct: 57  RNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHT--------GEMPYKCSSCSQQFMQKK 108

Query: 178 NL 179
           +L
Sbjct: 109 DL 110

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 86.4 bits (215), Expect = 1e-22
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 55  QIHMR---THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSW 111
             H      +  E+ F C VC + F ++  L  H   H       + PY C+ C   F  
Sbjct: 52  LEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG-----EMPYKCSSCSQQFMQ 106

Query: 112 KQNLEVHM-RTHTGER 126
           K++L+ HM + H+G  
Sbjct: 107 KKDLQSHMIKLHSGPS 122

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  132 bits (334), Expect = 1e-39
 Identities = 49/96 (51%), Positives = 63/96 (65%), Gaps = 5/96 (5%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
           + H RTHTGE+P+ C  CGK F+Q + L  H+R H       +KPY C EC  +FS + N
Sbjct: 94  RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-----EKPYKCPECGKSFSREDN 148

Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           L  H RTHTGE+PY+C  CGK FS++ A N H+RTH
Sbjct: 149 LHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  131 bits (333), Expect = 2e-39
 Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 13/125 (10%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
             H RTHTGE+P++C  CGK F+Q++ L  H+R H       +KPY C EC  +FS   +
Sbjct: 66  TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG-----EKPYACPECGKSFSQLAH 120

Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
           L  H RTHTGE+PY+C  CGK FS++   +TH+RTH          ++P+ CP C   F+
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT--------GEKPYKCPECGKSFS 172

Query: 175 TKQNL 179
            +  L
Sbjct: 173 RRDAL 177

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  131 bits (331), Expect = 3e-39
 Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 13/125 (10%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
                   GE+P+ C  CGK F++   L  H+R H       +KPY C EC  +FS K++
Sbjct: 10  VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTG-----EKPYKCPECGKSFSDKKD 64

Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
           L  H RTHTGE+PY+C  CGK FSQ++    H+RTH          ++P+ CP C   F+
Sbjct: 65  LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT--------GEKPYACPECGKSFS 116

Query: 175 TKQNL 179
              +L
Sbjct: 117 QLAHL 121

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 96.7 bits (242), Expect = 8e-26
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 76  FAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGK 135
               S+      +        +KPY C EC  +FS   +L  H RTHTGE+PY+C  CGK
Sbjct: 3   EFGSSSSVAQAALEPG-----EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGK 57

Query: 136 RFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
            FS K     H+RTH          ++P+ CP C   F+ + NL
Sbjct: 58  SFSDKKDLTRHQRTHT--------GEKPYKCPECGKSFSQRANL 93

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 96.0 bits (240), Expect = 2e-25
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
           + H RTHTGE+P++C  CGK F+++  L+TH+R H       +KPY C EC  +FS +  
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG-----EKPYKCPECGKSFSRRDA 176

Query: 115 LEVHMRTHTGERP 127
           L VH RTHTG++ 
Sbjct: 177 LNVHQRTHTGKKT 189

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 70.2 bits (173), Expect = 1e-15
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 108 TFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP 167
           +     +         GE+PY C  CGK FS+      H+RTH          ++P+ CP
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT--------GEKPYKCP 53

Query: 168 ACEGMFTTKQNL 179
            C   F+ K++L
Sbjct: 54  ECGKSFSDKKDL 65

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score =  125 bits (317), Expect = 5e-38
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 58  MRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEV 117
               +G++ + C  CGK F  KS  + H  +H+       +PY C  C   F  K +L  
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLG-----LRPYGCGVCGKKFKMKHHLVG 55

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQ 177
           HM+ HTG +PYEC IC KRF  +   + H+              + +     E   T   
Sbjct: 56  HMKIHTGIKPYECNICAKRFMWRD--SFHRHVTS--------CTKSYEAAKAEQNTTEAS 105

Query: 178 NL 179
             
Sbjct: 106 GP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score =  118 bits (299), Expect = 2e-35
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
            HM  H G RP+ C VCGK+F  K  L  H ++H        KPY C  C   F W+ + 
Sbjct: 27  RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG-----IKPYECNICAKRFMWRDSF 81

Query: 116 EVHMRTHTGERPYECEICGKRFSQKSA 142
             H    +  + YE     +  ++ S 
Sbjct: 82  --HRHVTSCTKSYEAAKAEQNTTEASG 106

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 3/28 (10%), Positives = 10/28 (35%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNT 84
           H    +  + +E     +   + S  ++
Sbjct: 82  HRHVTSCTKSYEAAKAEQNTTEASGPSS 109

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score =  121 bits (305), Expect = 4e-36
 Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWK 112
           + H+ TH G R   C  CGK F + S L  H+ VH       +KP+ CT   C   FS  
Sbjct: 24  RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG-----EKPFQCTFEGCGKRFSLD 77

Query: 113 QNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
            NL  H+R HTG+RPY C    C K+F+Q +   +H  TH
Sbjct: 78  FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score =  111 bits (279), Expect = 4e-32
 Identities = 39/122 (31%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
            R   C    C K F   S +  H   H        + + C EC   F     L+ H   
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTH------GPRVHVCAECGKAFVESSKLKRHQLV 56

Query: 122 HTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA--CEGMFTTKQ 177
           HTGE+P++C    CGKRFS      TH R H          DRP+ CP   C   F    
Sbjct: 57  HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT--------GDRPYVCPFDGCNKKFAQST 108

Query: 178 NL 179
           NL
Sbjct: 109 NL 110

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 98.0 bits (245), Expect = 4e-27
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHC--TECEATFS 110
           + H   HTGE+PF+C    CGKRF+    L TH R+H       D+PY C    C   F+
Sbjct: 51  KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG-----DRPYVCPFDGCNKKFA 105

Query: 111 WKQNLEVHMRTHTGERPYE 129
              NL+ H+ TH   +  +
Sbjct: 106 QSTNLKSHILTHAKAKNNQ 124

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score =  119 bits (301), Expect = 6e-36
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
               RTHTGE+P+ C  C K F QK  L+ H + +    +     + C++C  TF+ +  
Sbjct: 4   GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY-HDPNFVPAAFVCSKCGKTFTRRNT 62

Query: 115 LEVHMRTHTGERPYECEICGKRF 137
           +  H     G    E E  G   
Sbjct: 63  MARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 69.5 bits (171), Expect = 2e-16
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMF 173
           +     RTHTGE+PY C  C K F QK   + H + +       +     F C  C   F
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH----DPNFVPAAFVCSKCGKTF 57

Query: 174 TTKQNL 179
           T +  +
Sbjct: 58  TRRNTM 63

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score =  117 bits (295), Expect = 6e-35
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 61  HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR 120
            +G     C++CGK F     LN HK  H       +KPY C  C   F  K  +  H+R
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSG-----EKPYSCPVCGLRFKRKDRMSYHVR 56

Query: 121 THTGE--RPYECEICGKRFSQKSACNTH-KRTH 150
           +H G   +PY C+ CGK FS+    N H K+ H
Sbjct: 57  SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 92.9 bits (232), Expect = 2e-25
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
             H  +H+GE+P+ C VCG RF +K  ++ H R H        KPY C  C   FS   +
Sbjct: 24  NRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG---SVGKPYICQSCGKGFSRPDH 80

Query: 115 LEVHM-RTHTGER 126
           L  H+ + H+G  
Sbjct: 81  LNGHIKQVHSGPS 93

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 87.2 bits (217), Expect = 4e-23
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
               C  C   F    +L  H  +H+GE+PY C +CG RF +K   + H R+H       
Sbjct: 6   SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH------D 59

Query: 158 HPKDRPFHCPACEGMFTTKQNL 179
               +P+ C +C   F+   +L
Sbjct: 60  GSVGKPYICQSCGKGFSRPDHL 81

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score =  119 bits (300), Expect = 1e-34
 Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 57  HMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWK 112
                   + + C    CG  + +   L  H   H       +KP+ C E  CE  F+  
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTG-----EKPFPCKEEGCEKGFTSL 57

Query: 113 QNLEVHMRTHTGERPYECE--ICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA-- 168
            +L  H  THTGE+ + C+   C  RF+ K+    H           + K   + C    
Sbjct: 58  HHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH------NIKICVYVCHFEN 111

Query: 169 CEGMFTTKQNL 179
           C   F     L
Sbjct: 112 CGKAFKKHNQL 122

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score =  115 bits (291), Expect = 3e-33
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 55  QIHMRTHTGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFS 110
           Q H+  HTGE+PF C    C K F     L  H   H       +K + C    C+  F+
Sbjct: 31  QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-----EKNFTCDSDGCDLRFT 85

Query: 111 WKQNLEVHMRTHTGER--PYECEI--CGKRFSQKSACNTHKRTH 150
            K N++ H       +   Y C    CGK F + +    H+ +H
Sbjct: 86  TKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 97.7 bits (244), Expect = 4e-26
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 55  QIHMRTHTGER--PFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEAT 108
           + H       +   + C    CGK F + + L  H+  H         PY C    C+  
Sbjct: 91  KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-----QLPYECPHEGCDKR 145

Query: 109 FSWKQNLEVHMRTHTG---ERPYECEICGKRFSQKSACNTHKRTH 150
           FS    L+ H + H G   ++   C   GK ++           H
Sbjct: 146 FSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL--KHVAECH 188

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score =  118 bits (297), Expect = 2e-34
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFS 110
            +HMR HTGE+P +C    C K +++   L TH R H       +KPY C    C   FS
Sbjct: 56  VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG-----EKPYMCEHEGCSKAFS 110

Query: 111 WKQNLEVHM-RTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
              +   H  RTH+ E+PY C++  C KR++  S+   H +T 
Sbjct: 111 NASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score =  109 bits (275), Expect = 3e-31
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 24/128 (18%)

Query: 55  QIHM---RTHTGERPFECDVCG-----KRFAQKSTLNTHKRVHISYLHVKDKPYHCT--E 104
             H+     H   + F C   G     + F  +  L  H R H       +KP+ CT   
Sbjct: 20  VHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG-----EKPHKCTFEG 74

Query: 105 CEATFSWKQNLEVHMRTHTGERPYECE--ICGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
           C  ++S  +NL+ H+R+HTGE+PY CE   C K FS  S    H+        R H  ++
Sbjct: 75  CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN-------RTHSNEK 127

Query: 163 PFHCPACE 170
           P+ C    
Sbjct: 128 PYVCKLPG 135

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 83.0 bits (206), Expect = 6e-21
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 55  QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHK-RVHISYLHVKDKPYHCT--ECEATF 109
           + H+R+HTGE+P+ C  + C K F+  S    H+ R H +     +KPY C    C   +
Sbjct: 86  KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN-----EKPYVCKLPGCTKRY 140

Query: 110 SWKQNLEVHMRTHTG 124
           +   +L  H++T  G
Sbjct: 141 TDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 18/92 (19%)

Query: 98  KPYHCTECEATFSWKQNLEVHM---RTHTGERPYECEICG-----KRFSQKSACNTHKRT 149
                  C   F  ++ L  H+     H   + + C   G     + F  +     H R 
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61

Query: 150 HIPYLPRVHPKDRPFHCPA--CEGMFTTKQNL 179
           H          ++P  C    C   ++  +NL
Sbjct: 62  HT--------GEKPHKCTFEGCRKSYSRLENL 85

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 5/53 (9%)

Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQ 177
           E     + C + F  +     H  +       +H + + F C         + 
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSE-----HIHGERKEFVCHWGGCSRELRP 48

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score =  114 bits (287), Expect = 9e-34
 Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 64  ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
           ERP+ C V  C +RF+Q  +L  H R+H        KP+ C  C   FS   +L  H+RT
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
           HTGE+P+ C+ICG++F++      H + H
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 98.3 bits (246), Expect = 2e-27
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
           H+R HTG++PF+C +C + F++   L TH R H       +KP+ C  C   F+     +
Sbjct: 25  HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-----EKPFACDICGRKFARSDERK 79

Query: 117 VHMRTHTGER 126
            H + H  ++
Sbjct: 80  RHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 83.7 bits (208), Expect = 6e-22
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 98  KPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
           +PY C    C+  FS   +L  H+R HTG++P++C IC + FS+     TH RTH     
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT---- 58

Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
                ++PF C  C   F      
Sbjct: 59  ----GEKPFACDICGRKFARSDER 78

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 64.0 bits (157), Expect = 2e-14
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
            H+RTHTGE+PF CD+CG++FA+      H ++H
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score =  115 bits (289), Expect = 3e-33
 Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 18/107 (16%)

Query: 57  HMRTHTGERPF---------ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--EC 105
           H+       P          EC   GK F  K  L  H RVH       +KP+ C    C
Sbjct: 44  HVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH-----TGEKPFPCPFPGC 98

Query: 106 EATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
              F+  +NL++H RTHTGE+P++CE   C +RF+  S    H   H
Sbjct: 99  GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score =  114 bits (288), Expect = 3e-33
 Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 16/114 (14%)

Query: 48  FGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYH------ 101
             P+            +       C + F+    L TH  +     HV   P        
Sbjct: 7   GQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME----HV-GGPEQNNHVCY 61

Query: 102 ---CTECEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
              C     +F  K  L  H+R HTGE+P+ C    CGK F++      HKRTH
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 95.4 bits (238), Expect = 1e-25
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFS 110
             H+R HTGE+PF C    CGK FA+   L  HKR H       +KP+ C    C+  F+
Sbjct: 79  VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG-----EKPFKCEFEGCDRRFA 133

Query: 111 WKQNLEVHMRTHTGERPYEC 130
              + + HM  HT ++    
Sbjct: 134 NSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 78.5 bits (194), Expect = 4e-19
 Identities = 26/119 (21%), Positives = 34/119 (28%), Gaps = 24/119 (20%)

Query: 72  CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPY--- 128
            G          + K +                C+ TFS    L  H+       P    
Sbjct: 3   SGSSGQPIKQELSCKWI-----DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57

Query: 129 ------ECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA--CEGMFTTKQNL 179
                 EC   GK F  K     H R H          ++PF CP   C  +F   +NL
Sbjct: 58  HVCYWEECPREGKSFKAKYKLVNHIRVHT--------GEKPFPCPFPGCGKIFARSENL 108

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
           +IH RTHTGE+PF+C+   C +RFA  S    H  VH S     DK    +
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS-----DKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 5/79 (6%)

Query: 104 ECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH---IPYLPRVHPK 160
              ++    +           +     + C + FS      TH        P   + +  
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE--QNNHV 59

Query: 161 DRPFHCPACEGMFTTKQNL 179
                CP     F  K  L
Sbjct: 60  CYWEECPREGKSFKAKYKL 78

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score =  111 bits (280), Expect = 8e-33
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 67  FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
           F+C +CGK F + STL+TH  +H        +PY C  C   F  K +++ H   HTGE+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSD-----TRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56

Query: 127 PYECEICGKRFSQKSACNTHKRTH 150
           P++C++CGK FSQ S   TH R H
Sbjct: 57  PHKCQVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 78.2 bits (194), Expect = 8e-20
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHP 159
           + C  C  +F     L  H+  H+  RPY C+ CGKRF QKS    H   H         
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT-------- 53

Query: 160 KDRPFHCPACEGMFTTKQNL 179
            ++P  C  C   F+   NL
Sbjct: 54  GEKPHKCQVCGKAFSQSSNL 73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score =  109 bits (274), Expect = 5e-32
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
               RTH+GE+P+EC +C  RF Q  T+  H     +        +HC  C+   + K +
Sbjct: 4   GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE---NVAKFHCPHCDTVIARKSD 60

Query: 115 LEVHMRT-HTGERPY 128
           L VH+R  H+   P 
Sbjct: 61  LGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 80.3 bits (199), Expect = 1e-20
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMF 173
           +     RTH+GE+PYEC IC  RF+Q      H                 FHCP C+ + 
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH------TENVAKFHCPHCDTVI 55

Query: 174 TTKQNL 179
             K +L
Sbjct: 56  ARKSDL 61

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score =  103 bits (258), Expect = 1e-29
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 61  HTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLE 116
            +G     CD   CG+ F+ +  LN HK+      H+  K + C E  C  +F++K++L+
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQ----HIHQKSFSCPEPACGKSFNFKKHLK 57

Query: 117 VHMRTHTGERPYECEICGKRF 137
            HM+ H+  R Y CE  G   
Sbjct: 58  EHMKLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 55 QIHMRTHTGERPFECDVCGKRF 76
          + HM+ H+  R + C+  G   
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score =  102 bits (257), Expect = 3e-29
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 65  RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG 124
           +PF+C +C + F++   L TH R H       +KP+ C  C   F+     + H      
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTG-----EKPFACDICGRKFARSDERKRHRDIQH- 55

Query: 125 ERPYECEICGKRFSQKSACNTHK---RTH 150
             P   +   +  S+           +  
Sbjct: 56  ILPILEDKVEELLSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 94.9 bits (237), Expect = 3e-26
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
             H+RTHTGE+PF CD+CG++FA+      H+ +          P    + E   S   +
Sbjct: 20  TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ------HILPILEDKVEELLSKNYH 73

Query: 115 LEVH---MRTHTGER 126
           LE     ++   GER
Sbjct: 74  LENEVARLKKLVGER 88

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 92.6 bits (231), Expect = 2e-25
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
           KP+ C  C   FS   +L  H+RTHTGE+P+ C+ICG++F++      H+          
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ------- 54

Query: 158 HPKDRPFHCPACEGMFTTKQNLE 180
                P      E + +   +LE
Sbjct: 55  --HILPILEDKVEELLSKNYHLE 75

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score =  101 bits (255), Expect = 3e-29
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
             H      ++P++CD C   F  K  L +HK VH       +KPY C  C A F+   N
Sbjct: 6   HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG-----EKPYRCNICGAQFNRPAN 60

Query: 115 LEVHMRTHTGERPY 128
           L+ H R H+GE+PY
Sbjct: 61  LKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 94.8 bits (237), Expect = 2e-26
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 80  STLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQ 139
              + H  +  S     DKPY C  C+A+F +K NL  H   HTGE+PY C ICG +F++
Sbjct: 3   HHHHHHSHMTHS-----DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57

Query: 140 KSACNTHKRTH 150
            +   TH R H
Sbjct: 58  PANLKTHTRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 64.4 bits (158), Expect = 1e-14
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMF 173
           +   H      ++PY+C+ C   F  K    +HK  H          ++P+ C  C   F
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHT--------GEKPYRCNICGAQF 55

Query: 174 TTKQNL 179
               NL
Sbjct: 56  NRPANL 61

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score =  102 bits (256), Expect = 4e-29
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 61  HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVH 118
            T     +   CGK + + S L  H R H       +KPYHC    C   F+    L  H
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG-----EKPYHCDWDGCGWKFARSDELTRH 56

Query: 119 MRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
            R HTG RP++C+ C + FS+      H + H
Sbjct: 57  YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 79.5 bits (197), Expect = 3e-20
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHI 151
                      C  T++   +L+ H+RTHTGE+PY C  + CG +F++      H R H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 152 PYLPRVHPKDRPFHCPACEGMFT 174
                     RPF C  C+  F+
Sbjct: 62  --------GHRPFQCQKCDRAFS 76

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 60.2 bits (147), Expect = 6e-13
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
            H R HTG RPF+C  C + F++   L  H + H
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 98.3 bits (246), Expect = 1e-27
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
                   R ++CD CGK F+  S L+ H+R H       +KPY C EC   F  + +L 
Sbjct: 9   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG-----EKPYKCDECGKAFIQRSHLI 63

Query: 117 VHMRTHTGERPYE 129
            H R HTG  P  
Sbjct: 64  GHHRVHTGSGPSS 76

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 94.0 bits (235), Expect = 4e-26
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 77  AQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKR 136
               +    +           + Y C EC  +FS   +L  H RTHTGE+PY+C+ CGK 
Sbjct: 1   GSSGSSGRSEWQQRE-----RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKA 55

Query: 137 FSQKSACNTHKRTH 150
           F Q+S    H R H
Sbjct: 56  FIQRSHLIGHHRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.1 bits (147), Expect = 7e-13
 Identities = 21/34 (61%), Positives = 25/34 (73%)

Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
           H RTHTGE+P++CD CGK F Q+S L  H RVH
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 97.2 bits (243), Expect = 2e-27
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 59  RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH 118
            + +   P +C  C    + K+ L  H+R+H +     D+P+ C  C        NL  H
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCT-----DRPFKCNYCSFDTKQPSNLSKH 56

Query: 119 MRTHTGERPYEC 130
           M+   G+     
Sbjct: 57  MKKFHGDMSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 67.5 bits (166), Expect = 6e-16
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
          +IH R H  +RPF+C+ C     Q S L+ H +  
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 62.5 bits (153), Expect = 5e-14
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 8/60 (13%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
            + +   P +C  C    S K+A   H+R H          DRPF C  C        NL
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHC--------TDRPFKCNYCSFDTKQPSNL 53

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 94.5 bits (236), Expect = 3e-26
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
               H+GE+P+ C  CGK F++ S L  H+RVH       +KPY C EC   FS    L 
Sbjct: 5   SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG-----EKPYKCLECGKAFSQNSGLI 59

Query: 117 VHMRTHTGERPY 128
            H R HT     
Sbjct: 60  NHQRIHTSGPSS 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 58.6 bits (143), Expect = 2e-12
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
                  H+GE+PY C  CGK FS+ S    H+R        VH  ++P+ C  C   F+
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR--------VHTGEKPYKCLECGKAFS 53

Query: 175 TKQNL 179
               L
Sbjct: 54  QNSGL 58

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 95.0 bits (237), Expect = 4e-26
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 48  FGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--EC 105
            G         R H  + P     C K + + S L  H R H       +KPY CT   C
Sbjct: 3   SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTG-----EKPYKCTWEGC 53

Query: 106 EATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           +  F+    L  H R HTG +P++C +C + FS+      H + H
Sbjct: 54  DWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 81.9 bits (203), Expect = 4e-21
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 55  QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
           + H+RTHTGE+P++C  + C  RFA+   L  H R H        KP+ C  C  +FS  
Sbjct: 34  KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-----TGAKPFQCGVCNRSFSRS 88

Query: 113 QNLEVHMRTHT 123
            +L +HM+ H 
Sbjct: 89  DHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 73.8 bits (182), Expect = 6e-18
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 76  FAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC--EIC 133
                     +R+H               C   ++   +L+ H+RTHTGE+PY+C  E C
Sbjct: 3   SGSSGPDLEKRRIHYC---------DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGC 53

Query: 134 GKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
             RF++      H R H           +PF C  C   F+   +L
Sbjct: 54  DWRFARSDELTRHYRKHT--------GAKPFQCGVCNRSFSRSDHL 91

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 90.5 bits (225), Expect = 1e-24
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 61  HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR 120
            +G    +C++CG    QK++LN H+R H     V    + C  C   F    ++  H  
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAE--TVAALRFPCEFCGKRFEKPDSVAAHRS 59

Query: 121 T-HTGERPYECEICGKRF 137
             H        E  G   
Sbjct: 60  KSHPALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 63.6 bits (155), Expect = 3e-14
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
            +G    +CEICG    QK++ N H+R H             F C  C   F    ++
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKH-----AETVAALRFPCEFCGKRFEKPDSV 54

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 60.5 bits (147), Expect = 5e-13
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 7/58 (12%)

Query: 55  QIHMRTHT---GERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATF 109
             H R H        F C+ CGKRF +  ++  H+       H             + 
Sbjct: 24  NWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS----HPALLLAPQESSGPSS 77

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 88.8 bits (221), Expect = 4e-24
 Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 31/92 (33%)

Query: 59  RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH 118
            T  GE  + C VC + +   S    H                                 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTS----------------------------- 33

Query: 119 MRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
                  + Y C  C K F++K     H +  
Sbjct: 34  --HKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 70.3 bits (173), Expect = 6e-17
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
            T  GE  Y C++C + ++  S    H  T            + + CP C   FT K N+
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTS------HKRNVKVYPCPFCFKEFTRKDNM 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 76.8 bits (190), Expect = 1e-19
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTH-KRTH 150
           + + C  C   F+ +++L+ H R+HT E+PY C +C + F+++     H ++ H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 69.4 bits (171), Expect = 9e-17
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 65  RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHM-RTHT 123
           R F C+VC + FA++  L  H R      H  +KPY C  C   F+ +  L  H  + H+
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRS-----HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

Query: 124 GE 125
           G 
Sbjct: 56  GN 57

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 57.5 bits (140), Expect = 4e-12
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTH-KRVH 89
          + H R+HT E+P+ C +C + F ++  L  H +++H
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
           R + CE+C + F+++     H R+H          ++P+ C  C   FT +  L
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHT--------NEKPYPCGLCNRAFTRRDLL 46

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 76.3 bits (187), Expect = 9e-19
 Identities = 16/99 (16%), Positives = 29/99 (29%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
           +++    TG   F C  C   +     L  H      Y     +  +      +   K++
Sbjct: 8   KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS 67

Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPY 153
           L         ++  +C  CG  F      + H      Y
Sbjct: 68  LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 58.2 bits (140), Expect = 8e-12
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 8/104 (7%)

Query: 77  AQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKR 136
           +  S+   +  +           + C +C A +     L VHM   TG    +       
Sbjct: 2   SSGSSGKLYGSIF-----TGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNN 55

Query: 137 FSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
             ++ +    +      +       +   C  C   F + Q+L 
Sbjct: 56  NPKRWSKPRKRSLLE--MEGKEDAQKVLKCMYCGHSFESLQDLS 97

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 74.2 bits (183), Expect = 3e-18
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 67  FECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEVHMRTH 122
           + C    CGK F + + L  H+  H         PY C    C+  FS    L+ H + H
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQ-----QLPYECPHEGCDKRFSLPSRLKRHEKVH 56

Query: 123 TGERPYECEICGKRFSQKSA-CNTHKRTH 150
            G    + + C       +         H
Sbjct: 57  AGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 100 YHCT--ECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLP 155
           Y C    C   F     L+VH  +HT + PYEC  E C KRFS  S    H++ H  Y  
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY-- 59

Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
                       +C  +  T    
Sbjct: 60  ------PCKKDDSCSFVGKTWTLY 77

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 66.9 bits (164), Expect = 2e-15
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 55  QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
           ++H  +HT + P+EC    C KRF+  S L  H++VH  Y     K   C+    T++  
Sbjct: 20  KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY--PCKKDDSCSFVGKTWT-- 75

Query: 113 QNLEVHMRTH 122
             L+     H
Sbjct: 76  LYLKHVAECH 85

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 69.9 bits (172), Expect = 5e-17
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 32/83 (38%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + +  +P+ C  CGK F++   LN H +                             
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK----------------------------- 33

Query: 117 VHMRTHTGERPYECEICGKRFSQ 139
              + HT ERP++C++     S 
Sbjct: 34  ---QVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 58.0 bits (141), Expect = 2e-12
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
              + +  +PY C+ CGK FS+    N H +       +VH  +RP  C       ++
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK-------QVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 55 QIHM-RTHTGERPFECDVCGKRFAQ 78
            H+ + HT ERP +C V     + 
Sbjct: 29 NGHIKQVHTSERPHKCQVWVSGPSS 53

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 69.3 bits (170), Expect = 2e-16
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 80  STLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEICGKRF 137
           + L  +            +PY C    C+  FS    L  H+R HTG++P++C IC + F
Sbjct: 7   NNLLNYVVPK-------MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59

Query: 138 SQKSACNTHKRTH 150
           S+     TH RTH
Sbjct: 60  SRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 64.6 bits (158), Expect = 9e-15
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 57  HMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
                   RP+ C V  C +RF++   L  H R+H        KP+ C  C   FS   +
Sbjct: 10  LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFSRSDH 64

Query: 115 LEVHMRTHT 123
           L  H+RTHT
Sbjct: 65  LTTHIRTHT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 114 NLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG 171
           NL  ++      RPY C  E C +RFS+      H R H           +PF C  C  
Sbjct: 8   NLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHT--------GQKPFQCRICMR 57

Query: 172 MFTTKQNL 179
            F+   +L
Sbjct: 58  NFSRSDHL 65

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 66.0 bits (162), Expect = 2e-15
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
               + +GE+P+ C+ CGK F+QKS L+ H+R H       +KP   + 
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG-----EKPSGPSS 45

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + +GE+PY C  CGK FSQKS  + H+RTH
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 65.6 bits (161), Expect = 2e-15
 Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 33/75 (44%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
               + TGE+P+EC+ C K F  KS                                 NL
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKS---------------------------------NL 28

Query: 116 EVHMRTHTGERPYEC 130
            VH RTHTGE     
Sbjct: 29  MVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 62.1 bits (152), Expect = 5e-14
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TGE+PYEC  C K F+ KS    H+RTH
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 66.5 bits (162), Expect = 4e-15
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 60  THTGERPFECDVCGKRFAQKSTLNTH-KRVHISYLHVKDKPY-----HCTECEATFSWKQ 113
               +       C + F+    L TH    H+     +   +      C     +F  K 
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG--GPEQNNHVCYWEECPREGKSFKAKY 76

Query: 114 NLEVHMRTHTGERPYEC 130
            L  H+R HTGE+    
Sbjct: 77  KLVNHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 17/83 (20%), Positives = 21/83 (25%), Gaps = 17/83 (20%)

Query: 93  LHVKDKPYHCTECEATFSWKQNLEVHM-RTHTGERPY--------ECEICGKRFSQKSAC 143
           +           C+ TFS    L  H+   H G            EC   GK F  K   
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 144 NTHKRTHIPYLPRVHPKDRPFHC 166
             H R H           +    
Sbjct: 79  VNHIRVHTGE--------KSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 13/53 (24%)

Query: 59  RTHTGERPF--------ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
             H G            EC   GK F  K  L  H RVH       +K    +
Sbjct: 47  MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH-----TGEKSGPSS 94

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 64.9 bits (159), Expect = 5e-15
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + TG+RP+EC  CGK F  KS+L  H+R H       +KP   + 
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG-----EKPSGPSS 45

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 59.9 bits (146), Expect = 3e-13
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TG+RPYEC  CGK F  KS+   H+R+H
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.8 bits (159), Expect = 5e-15
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+PF+CD+CGK F  +S LN H  VH +     +KP   +
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA-----EKPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 1e-13
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TGE+P++C+ICGK F  +S  N H   H
Sbjct: 2   SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 64.4 bits (158), Expect = 6e-15
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 33/72 (45%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              +  GE+P+ C++CG RF    TL +                                
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKS-------------------------------- 29

Query: 117 VHMRTHTGERPY 128
            H+R HTG  P 
Sbjct: 30  -HLRIHTGSGPS 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 62.9 bits (154), Expect = 2e-14
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE+PY CEICG RF       +H R H
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 8e-15
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
               +  GE+ ++CDVCGK F+Q S L TH+RVH       +KP   +
Sbjct: 2   SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG-----EKPSGPS 44

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               +  GE+ Y+C++CGK FSQ S   TH+R H
Sbjct: 2   SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 8e-15
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + TGE+P+ C+ CGK F QKS LN H+R+H       +KP   + 
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG-----EKPSGPSS 45

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 1e-12
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY C  CGK F QKS  N H+R H
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 1e-14
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + TGE+P+EC VC K F QK+ L  H++ H       +KP   + 
Sbjct: 3   SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG-----EKPSGPSS 45

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PYEC++C K F+QK+    H++TH
Sbjct: 3   SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 2e-14
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
               + TGE+P++C+ CGK +  K  L+ H++VH       ++P   +
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG-----ERPSGPS 44

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 8e-13
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+CE CGK ++ K   + H++ H
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 2e-14
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + TGE+P++CDVC K F   S+L  H+R+H       +KP   + 
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG-----EKPSGPSS 45

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C++C K F   S+   H+R H
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 63.3 bits (155), Expect = 2e-14
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
               + TG++PFEC  CGK F  K  L TH+R+H       +K    +
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG-----EKSGPSS 44

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 57.2 bits (139), Expect = 4e-12
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TG++P+EC  CGK F  K    TH+R H
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 2e-14
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P+ C+VCGK F   + LN H RVH       +     +
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ-----ETLSGPS 44

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY C +CGK F   +  N H R H
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.9 bits (154), Expect = 2e-14
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
               + TGE+P+EC +CGK F +KS L+ H+++H       +KP   +
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG-----EKPSGPS 44

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 4e-13
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TGE+PYEC ICGK F++KS  + H++ H
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.5 bits (153), Expect = 3e-14
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
               + TGE+P+EC VCGK F+ + +L+ H+R+H        KP   +
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG-----KKPSGPS 44

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 4e-13
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TGE+PYEC +CGK FS + + + H+R H
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.6 bits (153), Expect = 3e-14
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 33/75 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              +  GE+P+ C  CGK F+ KS                                  L 
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKS---------------------------------YLI 29

Query: 117 VHMRTHTGERPYECE 131
           +HMRTH+GE+P    
Sbjct: 30  IHMRTHSGEKPSGPS 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 5e-13
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE+PY C  CGK FS KS    H RTH
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 62.5 bits (153), Expect = 3e-14
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+PF+C  CGK F+++S LN H ++H       +KP   +
Sbjct: 3   SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG-----EKPSGPS 44

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 59.1 bits (144), Expect = 8e-13
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P++C  CGK FS++SA N H + H
Sbjct: 3   SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.5 bits (153), Expect = 4e-14
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C  CGK F +KS L+ H++ H       ++    +
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG-----ERHSGPS 44

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F++KS  + H+++H
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.5 bits (153), Expect = 4e-14
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + +GE+P++C+ CGK F Q S L  H R+H       +KP   + 
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG-----EKPSGPSS 45

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+PY+C  CGK F+Q S    H R H
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 62.2 bits (152), Expect = 4e-14
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE+PY+CE CG RF Q +    H   H
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 61.8 bits (151), Expect = 7e-14
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 33/72 (45%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              +  GE+P++C+ CG RF Q +                                 +L 
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVA---------------------------------HLR 28

Query: 117 VHMRTHTGERPY 128
            H+  HTG  P 
Sbjct: 29  AHVLIHTGSGPS 40

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.1 bits (152), Expect = 4e-14
 Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 33/75 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TGE+PFEC  C K F  KS                                 NL 
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKS---------------------------------NLI 29

Query: 117 VHMRTHTGERPYECE 131
           VH RTHTGE+P    
Sbjct: 30  VHQRTHTGEKPSGPS 44

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.6 bits (143), Expect = 1e-12
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P+EC  C K F+ KS    H+RTH
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.2 bits (152), Expect = 4e-14
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GE+PF+C+ CGKRF Q S L++H+RVH       +KP   +
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG-----EKPSGPS 44

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 5e-13
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+P++CE CGKRF+Q S  ++H+R H
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.1 bits (152), Expect = 5e-14
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
               + TGE+P+ECDVC K F+  ++L  H+RVH       +KP   +
Sbjct: 2   SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG-----EKPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 9e-13
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TGE+PYEC++C K FS  ++   H+R H
Sbjct: 2   SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 62.1 bits (152), Expect = 5e-14
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TG +P+ C+ CGK F  KS                                  L 
Sbjct: 3   SGSSGTGMKPYVCNECGKAFRSKS---------------------------------YLI 29

Query: 117 VHMRTHTGERPYEC 130
           +H RTHTGE     
Sbjct: 30  IHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TG +PY C  CGK F  KS    H RTH
Sbjct: 3   SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.2 bits (152), Expect = 5e-14
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + +G++P+EC  C K F Q   LN HKRVH       ++    + 
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG-----ERSSGPSS 45

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +G++PYEC+ C K F Q    N HKR H
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.8 bits (151), Expect = 6e-14
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE P+EC  CGK F++K  L +H+R H       +KP   +
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG-----EKPSGPS 44

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 6e-13
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TGE PYEC  CGK FS+K    +H+RTH
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.8 bits (151), Expect = 6e-14
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGER +EC  CGK F QKSTL+ H+R+H       +KP   +
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG-----EKPSGPS 44

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 1e-12
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGER YEC  CGK F QKS  + H+R H
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.7 bits (151), Expect = 6e-14
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGER +EC  CGK FA+KSTL  H+R+H       +KP   +
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG-----EKPSGPS 44

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.0 bits (144), Expect = 7e-13
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGER YEC  CGK F++KS    H+R H
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.7 bits (151), Expect = 7e-14
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TGE PF C  CGK F  K+                                 NL 
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKT---------------------------------NLI 29

Query: 117 VHMRTHTGERPYEC 130
           +H + HTGERP   
Sbjct: 30  IHQKIHTGERPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE P+ C  CGK F+ K+    H++ H
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.7 bits (151), Expect = 7e-14
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + + E+P++C+ CGK + ++  L+ H+RV     H+ +K    +
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-----HMGEKTSGPS 44

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + + E+PY+CE CGK ++++   + H+R H
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.8 bits (151), Expect = 7e-14
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C  CGK F  KS L  H++ H       ++    +
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG-----ERHSGPS 44

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 84  THKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
           +            +KPY C++C  +F+WK  L +H + HTGER    
Sbjct: 2   SSGSSGTG-----EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F+ KS    H++ H
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.8 bits (151), Expect = 8e-14
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              +  G++ F+C+ C K F Q S+L  H+R+H       +KP   +
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG-----EKPSGPS 44

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  G++ ++C  C K F+Q S+   H+R H
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 8e-14
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TG + FEC  CGK F +KSTL+ H+++H       +KP   +
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG-----EKPSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 5e-12
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TG + +EC  CGK F++KS  + H++ H
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 62.4 bits (151), Expect = 8e-14
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
             + H G+R  +C  CG  F ++ST              + K   C +C      +  L 
Sbjct: 9   RQKIHLGDRSQKCSKCGIIFIRRST------------LSRRKTPMCEKCRKDSCQEAALN 56

Query: 117 VHMRTHTGERPY 128
                 +G++  
Sbjct: 57  KDEGNESGKKTS 68

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 55.8 bits (134), Expect = 3e-11
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 80  STLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQ 139
            +    +++H+      D+   C++C   F           T +  +   CE C K   Q
Sbjct: 4   GSSGKRQKIHLG-----DRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQ 51

Query: 140 KSACNTHKRTH 150
           ++A N  +   
Sbjct: 52  EAALNKDEGNE 62

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
          I   T +  +   C+ C K   Q++ LN  +   
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 61.4 bits (150), Expect = 8e-14
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + TGE+P+ C  CGK F   S L  H+RVH       +KP   + 
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG-----EKPSGPSS 45

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 59.9 bits (146), Expect = 4e-13
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 84  THKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE 131
           +            +KPY+C EC  +F W   L  H R H+GE+P    
Sbjct: 2   SSGSSGTG-----EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 56.4 bits (137), Expect = 8e-12
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY C+ CGK F   S    H+R H
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
              + TGE+P++C+ CGK F   S L+ H+R+H       +KP   + 
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG-----EKPSGPSS 45

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.6 bits (135), Expect = 2e-11
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F   S  + H+R H
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TGE+PF+C  CG                                   FSW  +L 
Sbjct: 3   SGSSGTGEKPFQCKECGM---------------------------------NFSWSCSLF 29

Query: 117 VHMRTHTGERPYEC 130
            H+R+H    P   
Sbjct: 30  KHLRSHERTDPSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.8 bits (143), Expect = 9e-13
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P++C+ CG  FS   +   H R+H
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TGE+P+EC  CGK F +KS                                  L 
Sbjct: 3   SGSSGTGEKPYECSDCGKSFIKKS---------------------------------QLH 29

Query: 117 VHMRTHTGERPYEC 130
           VH R HTGE P   
Sbjct: 30  VHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 6e-13
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TGE+PYEC  CGK F +KS  + H+R H
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GE+PF+C+ CGKRF Q S L++H+RVH       +KP   +
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG-----EKPSGPS 44

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+P++CE CGKRF+Q S  ++H+R H
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P+ C  CGK FAQK+ L  H+R+H       +KP   +
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG-----EKPSGPS 44

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 4e-12
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY C  CGK F+QK+    H+R H
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TG +P+ C  C K F+ KS                                  L 
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFSLKS---------------------------------QLI 29

Query: 117 VHMRTHTGERPYEC 130
           VH R+HTG +P   
Sbjct: 30  VHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TG +PY C  C K FS KS    H+R+H
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+PF+C  CGK F+    LN H+R+H       +KP   +
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG-----EKPSGPS 44

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 8e-13
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P++C  CGK FS     N H+R H
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 61.4 bits (150), Expect = 1e-13
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F  +  L TH  VH       +KP   +
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG-----EKPSGPS 44

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 58.7 bits (143), Expect = 9e-13
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+CE CGK F  +    TH   H
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 1e-13
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+ + C  CGK F++   L  H+R+H       +KP   +
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG-----EKPSGPS 44

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 8e-13
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+ Y C+ CGK FS+      H+R H
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 1e-13
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TGERP+ C VCGK F  +S                                 NL 
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRS---------------------------------NLI 29

Query: 117 VHMRTHTGERPYEC 130
            H + HTGE+P   
Sbjct: 30  KHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 1e-12
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGERPY C +CGK F+ +S    H++ H
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 61.0 bits (149), Expect = 1e-13
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+PFEC  CGK F+  S L TH+R+H       +KP   +
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG-----EKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P+EC  CGK FS  S   TH+R H
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 1e-13
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P+ C+ CGK F   S L  H+R+H       +KP   +
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG-----EKPSGPS 44

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 2e-12
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY CE CGK F   S    H+R H
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 61.0 bits (149), Expect = 1e-13
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 32/74 (43%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TG++P+EC  CGK F Q ++L  H R                             
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWR----------------------------- 33

Query: 117 VHMRTHTGERPYEC 130
                HTGE+P   
Sbjct: 34  ---YYHTGEKPSGP 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 56.4 bits (137), Expect = 9e-12
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA 168
              + TG++PYEC  CGK F Q ++   H R         H  ++P    +
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWR-------YYHTGEKPSGPSS 46

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F  +S+L  H+  H       +KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG-----EKPSGPS 44

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F  +S+   H+ TH
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+PF+C  CGK + Q+  L  H+RVH       +KP   +
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG-----EKPSGPS 44

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.6 bits (135), Expect = 2e-11
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P++C  CGK ++Q+     H+R H
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GE+P++C  CGK + ++  L+ H+RVH       +K    +
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG-----EKLSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+PY+C  CGK + ++   + H+R H
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F   S L TH+ +H       +KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG-----EKPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 7e-12
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F   S   TH+  H
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GERP+ C+ CGK F + S L  H + H      ++K    +
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-----REKSSGPS 44

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.2 bits (134), Expect = 2e-11
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GERPY C  CGK F + S    H + H
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 56  IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
               + TG +P++C+ CGK F+Q S L  H+RVH       +KP   +
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG-----EKPSGPS 44

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 8e-12
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TG +PY+C  CGK FSQ S    H+R H
Sbjct: 3   SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
              +KP  CTEC   F WK  L +H RTH  ++    
Sbjct: 7   GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.0 bits (141), Expect = 2e-12
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P +C  CGK F  KS    H+RTH
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P+EC+ CGK F+ +S+L TH+ +H        KP   +
Sbjct: 3   SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG-----KKPSGPS 44

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PYEC  CGK FS +S+  TH+  H
Sbjct: 3   SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC 102
              + TG +P+ C+ CGK F+  S+L TH+ +H       +KP   
Sbjct: 3   SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG-----EKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TG +PY C  CGK FS  S+  TH+  H
Sbjct: 3   SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGERP +C+ CGK F Q + L  H+R+H       +KP   +
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG-----EKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 7e-12
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGERP++C  CGK F Q +    H+R H
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F+Q S L  H+R+H       +KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG-----EKPSGPS 44

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 4e-12
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK FSQ S    H+R H
Sbjct: 3   SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P+ C  CGK F  +S L  H+++     H K KP   +
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-----HTKQKPSGPS 44

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 6e-12
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY C  CGK F+ +S    H++ H
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + +GE+P+EC+ CGK                                  F WK  L 
Sbjct: 3   SGSSGSGEKPYECNECGK---------------------------------AFIWKSLLI 29

Query: 117 VHMRTHTGERPYEC 130
           VH RTH G      
Sbjct: 30  VHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 59.5 bits (145), Expect = 4e-13
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+PYEC  CGK F  KS    H+RTH
Sbjct: 3   SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 60.3 bits (147), Expect = 3e-13
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
             +  GE+P+ CD CGK F+QK +L  H RVH
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 59.9 bits (146), Expect = 3e-13
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE+PY C+ CGK FSQK +   H R H
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 60.3 bits (147), Expect = 3e-13
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              +  GE+ ++C  C   F+Q S+L  H+ V     HV +KP   +
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-----HVGEKPSGPS 44

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE+ ++C  C   FSQ S+   H+  H
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GE+P+ CD CGK F   + L  H+R+H       +KP   +
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG-----EKPSGPS 44

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 6e-12
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+PY C+ CGK F   +    H+R H
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
              +KP+ C+ CE  FS K  L VH +TH  E+P   
Sbjct: 5   SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 53.7 bits (130), Expect = 9e-11
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +GE+P+ C  C K FS KS    H++TH
Sbjct: 3   SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 59.9 bits (146), Expect = 3e-13
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              +  GER   C  CGK F Q S    H+R+H       +KP   +
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-----GEKPSGPS 44

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GER + C  CGK F Q S    H+R H
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 3e-13
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              +  GE+P++C  CGK F+    L  H   H       +KP   +
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR-----EKPSGPS 44

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE+PY+C  CGK FS       H  TH
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 3e-13
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GERPF+C+ CGK F ++S L  H R+H      ++K    +
Sbjct: 3   SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-----REKSSGPS 44

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 5e-12
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GERP++C  CGK F ++S    H R H
Sbjct: 3   SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 3e-13
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GE+P++C  CGK F + + LN H+R+H        +P   +
Sbjct: 3   SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG-----YRPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 7e-12
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+PY+C  CGK F + +  N H+R H
Sbjct: 3   SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 4e-13
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC 102
              + TGE+P+ C  CGK F  +S L TH+++     H  +KP   
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-----HTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 4e-12
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY C  CGK F+ +S   TH++ H
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 59.8 bits (146), Expect = 4e-13
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+ ++C+ CGK F++ S L+ H+++H       +KP   +
Sbjct: 3   SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG-----EKPSGPS 44

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 56.4 bits (137), Expect = 8e-12
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+ Y+C  CGK FS+ S  + H++ H
Sbjct: 3   SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 4e-13
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F Q S L  H+R+H        KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG-----VKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.6 bits (135), Expect = 1e-11
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F+Q S    H+R H
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 59.9 bits (146), Expect = 4e-13
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 34/78 (43%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + +GE+PF+C+ CGK F   S                                    
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNS---------------------------------QCY 29

Query: 117 VHMRTHTGERPYECEICG 134
            H R+H+GE+P      G
Sbjct: 30  SHQRSHSGEKPSGPS-SG 46

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+P++CE CGK F   S C +H+R+H
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 4e-13
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F Q S L  H+ +H       +KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG-----EKPSGPS 44

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.0 bits (136), Expect = 1e-11
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F+Q S    H+  H
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 5e-13
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F Q S L  H+RVH        KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG-----GKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.6 bits (135), Expect = 1e-11
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F+Q S    H+R H
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 5e-13
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +GE+PF+C  CGK F Q   L +H R+H       +KP   +
Sbjct: 3   SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG-----EKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 9e-12
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+P++C+ CGK F Q     +H R H
Sbjct: 3   SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 59.4 bits (145), Expect = 5e-13
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P+EC  CGK F+Q + L  H+RVH       +KP   +
Sbjct: 3   SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG-----EKPSGPS 44

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 55.2 bits (134), Expect = 2e-11
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PYEC+ CGK FSQ +    H+R H
Sbjct: 3   SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 5e-13
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P EC  CGK F+  S L  H+R+H       + P   +
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG-----ENPSGPS 44

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+P+EC  CGK FS  S    H+R H
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 6e-13
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TG++P++C+ CGK F Q S L  H+ +H       +KP   +
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG-----EKPSGPS 44

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 5e-12
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
               + TG++PY+C  CGK F+Q S    H+  H
Sbjct: 2   SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 59.1 bits (144), Expect = 7e-13
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
                PY C++CE +FS K  L VH R HT E+P   
Sbjct: 7   GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              +  G  P++C  C K F+ K  L  H+R+H      ++KP   +
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-----REKPSGPS 44

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 56.4 bits (137), Expect = 9e-12
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  G  PY+C  C K FS K     H+R H
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 7e-13
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C VCGK F   S L  H  VH       ++P   +
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG-----ERPSGPS 44

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.4 bits (132), Expect = 5e-11
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C++CGK F   S    H   H
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 59.7 bits (145), Expect = 7e-13
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 94  HVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRT 149
             + + + C+   C  T+    +L+ H RTHTGE+P+ C  + C +RF++    + H+RT
Sbjct: 12  SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

Query: 150 H 150
           H
Sbjct: 72  H 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVH 89
          + H RTHTGE+PF C    C +RFA+   L+ H+R H
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 41.2 bits (97), Expect = 7e-06
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 12/69 (17%)

Query: 115 LEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC--PACE 170
                   +  R + C    CGK + + S    H RTH          ++PF C    CE
Sbjct: 5   SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT--------GEKPFSCSWKGCE 56

Query: 171 GMFTTKQNL 179
             F     L
Sbjct: 57  RRFARSDEL 65

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.0 bits (144), Expect = 8e-13
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C  CGK F + S L  H+ +H       +KP   +
Sbjct: 3   SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG-----EKPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.2 bits (134), Expect = 2e-11
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F + S    H+  H
Sbjct: 3   SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 59.3 bits (143), Expect = 8e-13
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           Y C EC         L+ H+RTHT  RPY C  C   F  K     H ++ 
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 57.8 bits (139), Expect = 3e-12
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 67  FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
           + C+ CG R  + S L  H R H        +PYHCT C  +F  K NL  HM++    +
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTD-----VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 47.0 bits (111), Expect = 3e-08
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
          + H+RTHT  RP+ C  C   F  K  L  H +  
Sbjct: 18 KKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 41.2 bits (96), Expect = 6e-06
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 128 YECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
           Y CE CG R  + S    H RTH           RP+HC  C   F TK NL 
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHT--------DVRPYHCTYCNFSFKTKGNLT 46

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 9e-13
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C  CGK F   S+   H+R+H        +P   +
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG-----QRPSGPS 44

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 5e-12
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F   S+C  H+R H
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.6 bits (143), Expect = 1e-12
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+P++C+ CGK F Q S L  H+ +H       +KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG-----EKPSGPS 44

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.7 bits (138), Expect = 7e-12
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE+PY+C  CGK F+Q S    H+  H
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 33/74 (44%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
              + TGE P+EC  CGK F++K                                   L 
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKD---------------------------------QLV 29

Query: 117 VHMRTHTGERPYEC 130
            H +TH+G+     
Sbjct: 30  SHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + TGE PYEC  CGK FS+K    +H++TH
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 58.3 bits (142), Expect = 1e-12
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + +  +  +C  CG+ F  KS LN H+R+H       +KP   +
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-----GEKPSGPS 44

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 55.6 bits (135), Expect = 2e-11
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +  + ++C  CG+ F+ KS  N H+R H
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 57.1 bits (139), Expect = 3e-12
 Identities = 17/72 (23%), Positives = 20/72 (27%), Gaps = 33/72 (45%)

Query: 59  RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH 118
              +GE P+EC  CGK F +K                                   L  H
Sbjct: 3   SGSSGENPYECSECGKAFNRKD---------------------------------QLISH 29

Query: 119 MRTHTGERPYEC 130
            RTH GE     
Sbjct: 30  QRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 54.8 bits (133), Expect = 3e-11
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +GE PYEC  CGK F++K    +H+RTH
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRTH 33

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 57.2 bits (139), Expect = 3e-12
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
             + +GE+   CD CGK F   S L  H+RVH
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 56.1 bits (136), Expect = 1e-11
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + +GE+ + C+ CGK F   SA   H+R H
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 55.8 bits (135), Expect = 1e-11
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 57  HMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
              + TGE+PF C    CG RF++   L+ H+R      H   KP   +
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-----HSGVKPSGPS 46

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 118 HMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC 166
              + TGE+P+ C    CG RFS+    + H+R+H           +P   
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS--------GVKPSGP 45

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 54.2 bits (131), Expect = 5e-11
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
             +  GE P+ C  CGK F Q+ +L  H+R  
Sbjct: 2  SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 54.2 bits (131), Expect = 5e-11
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE PY C  CGK F+Q+ +   H+R+ 
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 53.4 bits (129), Expect = 1e-10
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPY 128
              + PY C +C  +F+ + +L VH R+ +   P 
Sbjct: 6   SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 54.1 bits (131), Expect = 5e-11
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 59  RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPY 100
              +G+R +EC  CGK F QK +L  H+R+H         P 
Sbjct: 3   SGSSGQRVYECQECGKSFRQKGSLTLHERIHTG-----SGPS 39

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 52.6 bits (127), Expect = 2e-10
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +G+R YEC+ CGK F QK +   H+R H
Sbjct: 3   SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 53.0 bits (128), Expect = 2e-10
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              + T  + Y C  CGK F++      H++ H
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 52.6 bits (127), Expect = 2e-10
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
             + T  + + C+ CGK F +   L  H+++H
Sbjct: 3  SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 50.8 bits (122), Expect = 8e-10
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHI 151
             R  TG +P++C  C + FS+      H++ H+
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 50.8 bits (122), Expect = 9e-10
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
            R  TG +PF+C  C + F++   L  H++ H+
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTH 122
               KP+ C +C+ +FS   +L +H + H
Sbjct: 6   STGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +GE+PY C  C + FS  +    H++ H
Sbjct: 3   SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
             +GE+P+ C  C + F+  + L  H+++H
Sbjct: 3  SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 48.9 bits (117), Expect = 6e-09
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
              +KPY C EC+ TFS    L  H + HT +     
Sbjct: 5   SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 47.9 bits (114), Expect = 1e-08
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
             +  GE PF+C  C + F Q++ L  H+R H
Sbjct: 3  SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 46.0 bits (109), Expect = 7e-08
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
              +  GE P++C  C + F+Q++    H+RTH
Sbjct: 3   SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
              + P+ C++C+  F+ +  L  H RTH  +  
Sbjct: 7   GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC 133
           K   C  C   F    +L  H  +H+GE+PY     
Sbjct: 11  KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 59  RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC 105
            +    +   C++CGK F     LN HK       H  +KPY     
Sbjct: 5   SSGRTRKQVACEICGKIFRDVYHLNRHKLS-----HSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 8/52 (15%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG 171
            +    +   CEICGK F      N HK +        H  ++P+      G
Sbjct: 5   SSGRTRKQVACEICGKIFRDVYHLNRHKLS--------HSGEKPYSSGPSSG 48

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 48.0 bits (113), Expect = 8e-08
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 3/94 (3%)

Query: 57  HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
           H  T   +R     V       +    +     +         + C  C   FS   +L+
Sbjct: 33  HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI-SQFVCPLCLMPFSSSVSLK 91

Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
            H+R    E    C +C K F+   +   H    
Sbjct: 92  QHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 11/84 (13%)

Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPR 156
            + Y C  C A  S       H R         C  C  RF        H+         
Sbjct: 14  KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKC------ 65

Query: 157 VHPKDRPFHCPACEGMFTTKQNLE 180
              + +   C  C   F +  ++ 
Sbjct: 66  ---EYKKLTCLECMRTFKSSFSIW 86

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 54  PQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQ 113
                     +  ++C +C  + +      +H+R+  +          C  C   F   +
Sbjct: 4   GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA-------AVCPYCSLRFFSPE 56

Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT 149
             + H  +    +   C  C + F    +   H+  
Sbjct: 57  LKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 8/49 (16%), Positives = 13/49 (26%)

Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
                A  S          T +    Y+C +C          + H  +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 7/35 (20%), Positives = 11/35 (31%)

Query: 55  QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
                T +    ++C VC         L+ H   H
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 45

 Score = 38.0 bits (87), Expect = 7e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKP 99
           +GE+P+ C VCG RF +K  ++ H R H   +      
Sbjct: 5  SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 45

 Score = 36.4 bits (83), Expect = 3e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
            +GE+PY C +CG RF +K   + H R+H
Sbjct: 5   SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 36

 Score = 37.5 bits (86), Expect = 7e-05
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGER 126
           KPY C +C    + K NL VH+R HTGE+
Sbjct: 8   KPYKCPQCSYASAIKANLNVHLRKHTGEK 36

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1 Length = 35

 Score = 35.9 bits (82), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
            +G+RP+ C IC   F+ K+ C  H + H   L
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.83
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.81
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.8
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.75
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.73
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.73
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.72
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.69
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.69
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.69
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.69
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.67
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.66
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.65
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.64
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.63
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.59
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.59
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.58
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.58
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.58
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.57
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.53
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.53
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.53
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.51
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.51
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.5
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.5
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.49
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.49
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.48
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.48
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.46
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.45
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.45
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.45
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.43
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.42
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.4
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.4
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.39
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.39
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.37
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.35
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.33
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.32
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.32
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.31
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.31
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.26
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.24
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.21
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.2
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.19
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.18
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.15
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.15
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.14
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.14
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.13
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.12
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.11
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.08
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.08
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.05
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.03
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.02
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.02
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.0
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.99
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.99
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.97
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.97
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.93
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.92
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.9
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.88
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.88
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.84
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.83
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.81
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.8
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.79
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.78
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.75
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.71
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.68
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.65
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.62
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.59
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.55
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.51
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.48
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.41
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.4
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.37
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.37
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.35
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.29
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.27
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.23
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.23
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.21
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.21
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.18
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.18
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.17
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.16
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.15
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.14
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.13
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.12
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.12
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.38
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.09
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.08
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.07
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.06
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.03
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.03
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.03
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.0
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.25
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.99
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.98
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.98
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.97
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.96
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.18
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.92
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.92
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.91
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.9
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.89
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.87
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.85
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.85
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.84
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.84
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.83
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.81
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.99
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.98
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.73
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.9
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.51
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.29
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.56
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.45
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.31
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.95
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.91
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.66
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.31
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.94
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.21
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	93.97
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.88
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.43
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	91.0
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	90.55
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	89.15
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	88.04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	85.0
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	84.72
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	84.44
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.5
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	83.11
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	82.32
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	81.5

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=9.1e-33  Score=187.86  Aligned_cols=157  Identities=38%  Similarity=0.735  Sum_probs=124.3

Q ss_pred             Cceeeeeeccc-CCcccccccceeeeecC-------------CeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhh
Q psy3356          10 PSVTFDINIQK-NPLVFIPACVFRFSVEN-------------EKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKR   75 (180)
Q Consensus        10 ~~~~~~~~~~~-~~~~~c~~C~~~~~~~~-------------~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (180)
                      ..|..|+.... ...+.|+.|++.|....             .+.|..|++.|.+...|..|++.|.++++|.|++|++.
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            34445544332 23458888888887543             46677788888899999999999999999999999999


Q ss_pred             ccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCC
Q psy3356          76 FAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP  155 (180)
Q Consensus        76 f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  155 (180)
                      |.+...|..|+..|     .+++++.|+.|++.|.+...|..|+..|.++++|.|+.|++.|.+...|..|+++      
T Consensus        87 f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~------  155 (190)
T 2i13_A           87 FSQRANLRAHQRTH-----TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT------  155 (190)
T ss_dssp             ESCHHHHHHHHHHH-----HTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH------
T ss_pred             cCCHHHHHHHHHhc-----CCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHh------
Confidence            99999999999998     7889999999999999999999999999999999999999999999999999997      


Q ss_pred             CcCCCCCCcccCCCcccCCCccCC
Q psy3356         156 RVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       156 ~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                        |.+++||.|++|++.|.+.++|
T Consensus       156 --H~~~~~~~C~~C~~~f~~~~~L  177 (190)
T 2i13_A          156 --HTGEKPYKCPECGKSFSRRDAL  177 (190)
T ss_dssp             --HHCCCCEECTTTCCEESSHHHH
T ss_pred             --cCCCCCeECCCCCCccCCHHHH
Confidence              6789999999999999998766

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=1.6e-29  Score=171.85  Aligned_cols=131  Identities=44%  Similarity=0.838  Sum_probs=111.5

Q ss_pred             cCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhH
Q psy3356          36 ENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL  115 (180)
Q Consensus        36 ~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l  115 (180)
                      ...+.|..|++.|.....|..|++.|.++++|.|++|++.|.+...|..|+..|     .+++++.|+.|++.|.+...|
T Consensus        19 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l   93 (190)
T 2i13_A           19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-----TGEKPYKCPECGKSFSQRANL   93 (190)
T ss_dssp             ------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHH-----HCCCCEECTTTCCEESCHHHH
T ss_pred             CCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhc-----CCCCCccCcccCCccCCHHHH
Confidence            446789999999999999999999999999999999999999999999999998     788999999999999999999


Q ss_pred             HHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCccCC
Q psy3356         116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       116 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      ..|+..|.++++|.|+.|++.|.+...|..|++.        |.++++|.|++|++.|.+.++|
T Consensus        94 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~~~~~L  149 (190)
T 2i13_A           94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT--------HTGEKPYKCPECGKSFSREDNL  149 (190)
T ss_dssp             HHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHH--------HHCCCCEECTTTCCEESCHHHH
T ss_pred             HHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHH--------hCCCCCeECCCCCcccCCHHHH
Confidence            9999999999999999999999999999999997        6689999999999999998766

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.94  E-value=4.7e-28  Score=164.56  Aligned_cols=149  Identities=29%  Similarity=0.485  Sum_probs=120.1

Q ss_pred             CCcccccCCceeeeeecccC-Ccccc--cccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccc--cchhhc
Q psy3356           2 CSSKWITSPSVTFDINIQKN-PLVFI--PACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECD--VCGKRF   76 (180)
Q Consensus         2 C~~~f~~~~~~~~~~~~~~~-~~~~c--~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~--~C~~~f   76 (180)
                      |+..|.+...|..|++.... ..+.|  +.|++               .|.+...|..|+++|.++++|.|+  .|++.|
T Consensus        20 C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~---------------~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   84 (190)
T 1tf6_A           20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEK---------------GFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRF   84 (190)
T ss_dssp             TCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCC---------------CCSSHHHHHHHHTTTTTCCCEECCSSSCCCEE
T ss_pred             CcchhCCHHHHHHHHHhcCCCCCccCCCCCCCh---------------hhCCHHHHHHHHHHccCCCceeCCCCCCCCcc
Confidence            55555555555555554322 12345  44544               444999999999999999999999  899999


Q ss_pred             cChHHHHHHHHhccCCCcCCCcceec--cccCcccCChhhHHHHHhhcCCCCceeccc--cccccCChHHHHHHHHHcCC
Q psy3356          77 AQKSTLNTHKRVHISYLHVKDKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIP  152 (180)
Q Consensus        77 ~~~~~l~~H~~~~~~~~~~~~~~~~C--~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  152 (180)
                      .+...|..|+...|.   .+..+|.|  +.|++.|.+...|..|+..|.++++|.|+.  |++.|.....|..|+++   
T Consensus        85 ~~~~~l~~H~~~~h~---~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~---  158 (190)
T 1tf6_A           85 TTKANMKKHFNRFHN---IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV---  158 (190)
T ss_dssp             SCHHHHHHHHHTTSS---TTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTS---
T ss_pred             CCHHHHHHHHHHhcC---CCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHH---
Confidence            999999999955432   35678999  889999999999999999999999999988  99999999999999986   


Q ss_pred             CCCCcCCCCCCcccCC---CcccCCCccCC
Q psy3356         153 YLPRVHPKDRPFHCPA---CEGMFTTKQNL  179 (180)
Q Consensus       153 ~~~~~h~~~~~~~C~~---C~~~F~~~~~L  179 (180)
                           |.+   |.|+.   |++.|.+.+.|
T Consensus       159 -----H~~---~~C~~~~~C~~~f~~~~~l  180 (190)
T 1tf6_A          159 -----HAG---YPCKKDDSCSFVGKTWTLY  180 (190)
T ss_dssp             -----SCS---CCCCSTTTCCCCCSCHHHH
T ss_pred             -----hCC---CcCCCCCcCCCccccHHHH
Confidence                 455   88999   99999987765

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=3.7e-27  Score=155.10  Aligned_cols=124  Identities=33%  Similarity=0.625  Sum_probs=110.9

Q ss_pred             eecccCCCchhhhHhh---hcCCCCCcccccc-----hhhccChHHHHHHHHhccCCCcCCCcceeccc--cCcccCChh
Q psy3356          44 FSFLFGPLLVPQIHMR---THTGERPFECDVC-----GKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQ  113 (180)
Q Consensus        44 C~~~~~~~~~l~~H~~---~h~~~~~~~C~~C-----~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~~~~~~  113 (180)
                      |++.|.+...|..|++   +|.++++|.|+.|     ++.|.+...|..|++.|     .++++|.|+.  |++.|.+..
T Consensus         9 C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~f~~~~   83 (155)
T 2gli_A            9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH-----TGEKPHKCTFEGCRKSYSRLE   83 (155)
T ss_dssp             CCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHH-----HCCCCCCCCSTTCCCCCSSHH
T ss_pred             CccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhc-----CCCCCccCCCCCCCCcccCHH
Confidence            4444449999999998   6888899998753     49999999999999998     7889999985  999999999


Q ss_pred             hHHHHHhhcCCCCceeccc--cccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC--CcccCCCccCC
Q psy3356         114 NLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA--CEGMFTTKQNL  179 (180)
Q Consensus       114 ~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~--C~~~F~~~~~L  179 (180)
                      .|..|++.|.++++|.|+.  |++.|.+...|..|++.       +|+++++|.|++  |+++|.+.++|
T Consensus        84 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-------~H~~~~~~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A           84 NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR-------THSNEKPYVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             HHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHH-------TTCSCCCEECCSTTTCCEESSHHHH
T ss_pred             HHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHH-------hcCCCCCeeCCCCCCccccCCHHHH
Confidence            9999999999999999998  99999999999999943       488999999998  99999998776

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=7.9e-27  Score=149.35  Aligned_cols=116  Identities=23%  Similarity=0.430  Sum_probs=103.4

Q ss_pred             hhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          54 PQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        54 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      +..|..+|.|+++|.|++|++.|.....|..|+++|     .++++|.|+.|++.|.....|..|+..|.+++||.|++|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   84 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIH-----SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC   84 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHH-----HCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSS
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHc-----CCCCCeeCCccCeecccccchhhhccccCCCccccCCCC
Confidence            344567788999999999999999999999999998     889999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCc
Q psy3356         134 GKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK  176 (180)
Q Consensus       134 ~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~  176 (180)
                      ++.|.....|..|+++|++..  .....++|+|..|++.|...
T Consensus        85 ~k~F~~~~~L~~H~~~hh~~~--p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           85 GKSFINYQFMSSHIKSVHSQD--PSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             CCEESSHHHHHHHHHHHTCCC--TTSSSCCEEECCCCSSCCCC
T ss_pred             CCCcCCHHHHHHHhHHhcCCC--CCCCCCCeecCCCCchhhhc
Confidence            999999999999999976432  12346789999999988754

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=1.2e-26  Score=157.63  Aligned_cols=128  Identities=31%  Similarity=0.670  Sum_probs=116.1

Q ss_pred             ccc--cccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCccc--ccchhhccChHHHHHHHHhccCCCcCCCcc
Q psy3356          24 VFI--PACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKP   99 (180)
Q Consensus        24 ~~c--~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~   99 (180)
                      +.|  +.|++.|.               +...|..|++.|.++++|.|  +.|++.|.+...|..|++.|     .++++
T Consensus        13 ~~C~~~~C~~~f~---------------~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~   72 (190)
T 1tf6_A           13 YICSFADCGAAYN---------------KNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH-----TGEKN   72 (190)
T ss_dssp             CBCSSTTTCCBCS---------------SHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTT-----TTCCC
T ss_pred             eeCCCCCCcchhC---------------CHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHc-----cCCCc
Confidence            366  56766666               99999999999999999999  88999999999999999998     78899


Q ss_pred             eecc--ccCcccCChhhHHHHH-hhc-CCCCceec--cccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC--Ccc
Q psy3356         100 YHCT--ECEATFSWKQNLEVHM-RTH-TGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA--CEG  171 (180)
Q Consensus       100 ~~C~--~C~~~~~~~~~l~~H~-~~h-~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~--C~~  171 (180)
                      |.|+  .|++.|.+...|..|+ ..| .+.++|.|  +.|++.|.+...|..|+++        |.+++||.|++  |++
T Consensus        73 ~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~~~C~k  144 (190)
T 1tf6_A           73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS--------HTQQLPYECPHEGCDK  144 (190)
T ss_dssp             EECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG--------GSSSCSSBCCSSSCCC
T ss_pred             eeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH--------hCCCCCccCCCCCCCc
Confidence            9999  8999999999999999 566 46789999  8999999999999999986        77899999988  999


Q ss_pred             cCCCccCC
Q psy3356         172 MFTTKQNL  179 (180)
Q Consensus       172 ~F~~~~~L  179 (180)
                      +|.+.++|
T Consensus       145 ~F~~~~~L  152 (190)
T 1tf6_A          145 RFSLPSRL  152 (190)
T ss_dssp             BCSSHHHH
T ss_pred             hhcCHHHH
Confidence            99998766

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=6.4e-26  Score=149.17  Aligned_cols=136  Identities=31%  Similarity=0.569  Sum_probs=118.5

Q ss_pred             CCCcccccCCceeeeeec---c-cCCcccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCccccc--chh
Q psy3356           1 ACSSKWITSPSVTFDINI---Q-KNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDV--CGK   74 (180)
Q Consensus         1 ~C~~~f~~~~~~~~~~~~---~-~~~~~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~   74 (180)
                      .|+..|.+...|..|+..   . ....+.|+.|+          |..|++.|.....|..|++.|.++++|.|++  |++
T Consensus         8 ~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~----------C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~   77 (155)
T 2gli_A            8 GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----------CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRK   77 (155)
T ss_dssp             TCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT----------CTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCC
T ss_pred             CCccccCCHHHHHHHHHhhccCCCCcceeCCCCC----------ccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence            489999999999999872   2 22344777553          3334556669999999999999999999985  999


Q ss_pred             hccChHHHHHHHHhccCCCcCCCcceeccc--cCcccCChhhHHHHH-hhcCCCCceeccc--cccccCChHHHHHHHHH
Q psy3356          75 RFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEVHM-RTHTGERPYECEI--CGKRFSQKSACNTHKRT  149 (180)
Q Consensus        75 ~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~-~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~  149 (180)
                      .|.+...|..|++.|     .++++|.|+.  |++.|.+...|..|+ ..|.++++|.|+.  |++.|.+...|..|+++
T Consensus        78 ~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  152 (155)
T 2gli_A           78 SYSRLENLKTHLRSH-----TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT  152 (155)
T ss_dssp             CCSSHHHHHHHHHHT-----TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHc-----CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHh
Confidence            999999999999998     7889999998  999999999999999 8999999999988  99999999999999998


Q ss_pred             cC
Q psy3356         150 HI  151 (180)
Q Consensus       150 h~  151 (180)
                      |+
T Consensus       153 hh  154 (155)
T 2gli_A          153 VH  154 (155)
T ss_dssp             SC
T ss_pred             hc
Confidence            64

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.3e-24  Score=137.70  Aligned_cols=109  Identities=36%  Similarity=0.721  Sum_probs=99.1

Q ss_pred             ccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          24 VFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        24 ~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +.|+.|++.|.               ....|..|++.|.++++|.|++|++.|.+...|..|+..++..  .+..++.|+
T Consensus         8 ~~C~~C~~~f~---------------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~--~~~~~~~C~   70 (124)
T 2dlq_A            8 VECPTCHKKFL---------------SKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN--RSEQVFTCS   70 (124)
T ss_dssp             CCCTTTCCCCS---------------SHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC--SCCCCEECS
T ss_pred             CCCCCCCCcCC---------------CHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcC--CCCCCeECC
Confidence            46777766666               9999999999999999999999999999999999999864321  678899999


Q ss_pred             ccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHH
Q psy3356         104 ECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       104 ~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      .|++.|.....|..|+..|.++++|.|+.|++.|.....|..|++.
T Consensus        71 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           71 VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             SSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999986

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=7.5e-25  Score=144.09  Aligned_cols=115  Identities=34%  Similarity=0.600  Sum_probs=102.2

Q ss_pred             eEeeeecccCCCchhhhHhhh-cCCCCC--------cccccchhhccChHHHHHHHHhccCCCcCCCcceeccc--cCcc
Q psy3356          40 RFFFFSFLFGPLLVPQIHMRT-HTGERP--------FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEAT  108 (180)
Q Consensus        40 ~~~~C~~~~~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~  108 (180)
                      .|..|++.|.+...|..|++. |.+..+        |.|++|++.|.+...|..|++.|     .++++|.|..  |++.
T Consensus        27 ~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~  101 (155)
T 2rpc_A           27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH-----TGEKPFPCPFPGCGKI  101 (155)
T ss_dssp             SCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHH-----HCCCSEECSCTTTCCE
T ss_pred             ccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhc-----CCCCcccCCcCCCCCc
Confidence            333444444499999999997 766554        89999999999999999999998     7889999998  9999


Q ss_pred             cCChhhHHHHHhhcCCCCceeccc--cccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         109 FSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       109 ~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |.....|..|++.|.++++|.|+.  |++.|.....|..|+++        |.+++||.|+
T Consensus       102 f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--------H~~~k~~~c~  154 (155)
T 2rpc_A          102 FARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV--------HTSDKSGPSS  154 (155)
T ss_dssp             ESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT--------TTSCCCSCSC
T ss_pred             cCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH--------hcCCCCCCCC
Confidence            999999999999999999999997  99999999999999986        7899999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.7e-24  Score=137.11  Aligned_cols=105  Identities=30%  Similarity=0.705  Sum_probs=97.6

Q ss_pred             CCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhh---cCCCCceeccccccccC
Q psy3356          62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT---HTGERPYECEICGKRFS  138 (180)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~  138 (180)
                      .++++|.|++|++.|.....|..|++.|     .++++|.|+.|++.|.+...|..|+..   +.++++|.|++|++.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~   77 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKH-----TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFR   77 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHH-----SSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEES
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhC-----CCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccC
Confidence            4678899999999999999999999998     788999999999999999999999985   56789999999999999


Q ss_pred             ChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCccCC
Q psy3356         139 QKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       139 ~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      ....|..|++.        |.+++||.|++|++.|.+.++|
T Consensus        78 ~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~~~~~l  110 (124)
T 2dlq_A           78 RRMELRLHMVS--------HTGEMPYKCSSCSQQFMQKKDL  110 (124)
T ss_dssp             SHHHHHHHHHH--------HSSSCSEECSSSCCEESSHHHH
T ss_pred             CHHHHHHHHHH--------cCCCCCccCCCccchhCCHHHH
Confidence            99999999997        6789999999999999998766

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=6.8e-24  Score=133.48  Aligned_cols=96  Identities=41%  Similarity=0.879  Sum_probs=77.5

Q ss_pred             CCchhhhHhhhcCCCCCcccc--cchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCc
Q psy3356          50 PLLVPQIHMRTHTGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERP  127 (180)
Q Consensus        50 ~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~  127 (180)
                      +...|..|++.|.++++|.|+  .|++.|.+...|..|++.|     .++++|.|+.|++.|.....|..|+..|.++++
T Consensus        20 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (119)
T 2jp9_A           20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH-----TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP   94 (119)
T ss_dssp             CHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHH-----HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHc-----CCCCCccCCccCchhCCHHHHHHHHHHhcCCCC
Confidence            788888888888777888887  6888888888888888777     677778888888888888888888888888888


Q ss_pred             eec--cccccccCChHHHHHHHHHc
Q psy3356         128 YEC--EICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C--~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.|  +.|++.|.+...|..|+++|
T Consensus        95 ~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           95 FSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             eeCCCCCCccccCCHHHHHHHHhcC
Confidence            888  67888888888888887753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=3.3e-24  Score=134.92  Aligned_cols=105  Identities=41%  Similarity=0.943  Sum_probs=98.4

Q ss_pred             CCCCCccccc--chhhccChHHHHHHHHhccCCCcCCCcceecc--ccCcccCChhhHHHHHhhcCCCCceecccccccc
Q psy3356          62 TGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEICGKRF  137 (180)
Q Consensus        62 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  137 (180)
                      .++++|.|.+  |++.|.+...|..|++.|     .+.+++.|+  .|++.|.....|..|+..|.++++|.|+.|++.|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   76 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH-----TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF   76 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHH-----HTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhh-----CCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchh
Confidence            4678999997  999999999999999998     788999999  7999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHcCCCCCCcCCCCCCccc--CCCcccCCCccCC
Q psy3356         138 SQKSACNTHKRTHIPYLPRVHPKDRPFHC--PACEGMFTTKQNL  179 (180)
Q Consensus       138 ~~~~~l~~H~~~h~~~~~~~h~~~~~~~C--~~C~~~F~~~~~L  179 (180)
                      .+...|..|++.        |.++++|.|  +.|++.|.+.++|
T Consensus        77 ~~~~~l~~H~~~--------h~~~~~~~C~~~~C~~~f~~~~~L  112 (119)
T 2jp9_A           77 SRSDHLKTHTRT--------HTGEKPFSCRWPSCQKKFARSDEL  112 (119)
T ss_dssp             SCHHHHHHHHHH--------HHTCCCEECCSTTCCCEESSHHHH
T ss_pred             CCHHHHHHHHHH--------hcCCCCeeCCCCCCccccCCHHHH
Confidence            999999999997        678999999  8999999998776

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=5.5e-24  Score=134.88  Aligned_cols=95  Identities=42%  Similarity=0.790  Sum_probs=87.3

Q ss_pred             CCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccc--cCcccCChhhHHHHHhhcCCCCc
Q psy3356          50 PLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEVHMRTHTGERP  127 (180)
Q Consensus        50 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~  127 (180)
                      +...|..|+++| ++++|.|++|++.|.+...|..|++.|     .+++++.|+.  |++.|.....|..|+..|.++++
T Consensus        19 ~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   92 (124)
T 1ubd_C           19 DNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH-----TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP   92 (124)
T ss_dssp             SHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGT-----SCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHc-----CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc
Confidence            999999999998 788999999999999999999999988     7888999986  99999999999999999999999


Q ss_pred             eecc--ccccccCChHHHHHHHHHc
Q psy3356         128 YECE--ICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C~--~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.|+  .|++.|.+...|..|+++|
T Consensus        93 ~~C~~~~C~~~f~~~~~L~~H~~~H  117 (124)
T 1ubd_C           93 YVCPFDGCNKKFAQSTNLKSHILTH  117 (124)
T ss_dssp             CCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHH
Confidence            9995  5999999999999999974

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=1.5e-22  Score=128.20  Aligned_cols=104  Identities=38%  Similarity=0.766  Sum_probs=94.1

Q ss_pred             CCCCcccc--cchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccc--cccccC
Q psy3356          63 GERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFS  138 (180)
Q Consensus        63 ~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~  138 (180)
                      ++++|.|+  .|++.|.+...|..|++.|      +.+++.|..|++.|.+...|..|+..|.++++|.|+.  |++.|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   75 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH------GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS   75 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG------SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEES
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc------CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccC
Confidence            35689999  8999999999999999876      5688999999999999999999999999999999986  999999


Q ss_pred             ChHHHHHHHHHcCCCCCCcCCCCCCcccC--CCcccCCCccCCC
Q psy3356         139 QKSACNTHKRTHIPYLPRVHPKDRPFHCP--ACEGMFTTKQNLE  180 (180)
Q Consensus       139 ~~~~l~~H~~~h~~~~~~~h~~~~~~~C~--~C~~~F~~~~~L~  180 (180)
                      ....|..|+++        |.++++|.|+  .|++.|.+.++|+
T Consensus        76 ~~~~l~~H~~~--------h~~~~~~~C~~~~C~~~f~~~~~L~  111 (124)
T 1ubd_C           76 LDFNLRTHVRI--------HTGDRPYVCPFDGCNKKFAQSTNLK  111 (124)
T ss_dssp             CHHHHHHHHHH--------HHCCCCCCCCSTTCCCCCSSTTTTH
T ss_pred             CHHHHHHHHHH--------hCCCCceECCCCCCCCccCCHHHHH
Confidence            99999999997        6789999996  5999999999883

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=1.1e-22  Score=130.11  Aligned_cols=99  Identities=19%  Similarity=0.385  Sum_probs=90.8

Q ss_pred             cccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          23 LVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        23 ~~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      .|.|++|++.|.               ....|..|+++|.++++|.|++|++.|.....|..|+++|     .+++++.|
T Consensus        22 ~y~C~~C~k~F~---------------~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C   81 (133)
T 2lt7_A           22 YYICIVCKRSYV---------------CLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH-----TGERRYQC   81 (133)
T ss_dssp             EEEETTTCCEES---------------CHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHH-----HTCCCEEE
T ss_pred             CeECCCCCCCcC---------------CHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcccc-----CCCccccC
Confidence            458888888888               9999999999999999999999999999999999999998     88999999


Q ss_pred             cccCcccCChhhHHHHHhhcCCC------CceeccccccccCChH
Q psy3356         103 TECEATFSWKQNLEVHMRTHTGE------RPYECEICGKRFSQKS  141 (180)
Q Consensus       103 ~~C~~~~~~~~~l~~H~~~h~~~------~~~~C~~C~~~f~~~~  141 (180)
                      +.|++.|.....|..|++.|+++      ++|.|..|++.|....
T Consensus        82 ~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           82 LACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             SSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             CCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            99999999999999999998765      4589999999886543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=8.9e-22  Score=129.33  Aligned_cols=107  Identities=30%  Similarity=0.602  Sum_probs=95.6

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcc--------eeccccCcccCChhhHHHHHhhcCCCCceeccc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKP--------YHCTECEATFSWKQNLEVHMRTHTGERPYECEI  132 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~--------~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  132 (180)
                      ...+.+|.|.+|++.|.+...|..|++.+|    .+..+        +.|..|++.|.+...|..|+..|.++++|.|..
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H----~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   95 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH----VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF   95 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTT----SCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhc----CCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc
Confidence            445678999999999999999999999843    33332        789999999999999999999999999999998


Q ss_pred             --cccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC--CcccCCCccCC
Q psy3356         133 --CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA--CEGMFTTKQNL  179 (180)
Q Consensus       133 --C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~--C~~~F~~~~~L  179 (180)
                        |++.|.....|..|+++        |.++++|.|++  |++.|.+.++|
T Consensus        96 ~~C~~~f~~~~~L~~H~~~--------h~~~~~~~C~~~~C~k~f~~~~~L  138 (155)
T 2rpc_A           96 PGCGKIFARSENLKIHKRT--------HTGEKPFKCEFEGCDRRFANSSDR  138 (155)
T ss_dssp             TTTCCEESCHHHHHHHHTT--------TCSSCSBCCSSTTCCCCBSSHHHH
T ss_pred             CCCCCccCCHHHHHHHHHh--------hCCCCCccCCCCCCCCccCCHHHH
Confidence              99999999999999986        77899999997  99999988765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=7e-21  Score=117.52  Aligned_cols=97  Identities=14%  Similarity=0.290  Sum_probs=88.9

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceecccccc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGK  135 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  135 (180)
                      .+++.|.++++|.|.+|++.|.....|..|++.|       .++|.|..|++.|.....|..|+. |.++++|.|++|++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H-------~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~   77 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-------RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMR   77 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH-------HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTE
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHC-------CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccc
Confidence            3567788999999999999999999999999987       268999999999999999999996 99999999999999


Q ss_pred             ccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         136 RFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       136 ~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      .|.....|..|++.       +|+++++|.|+
T Consensus        78 ~f~~~~~L~~H~~~-------~H~~~~~~~~~  102 (107)
T 1wjp_A           78 TFKSSFSIWRHQVE-------VHNQNNMAPTS  102 (107)
T ss_dssp             ECSSHHHHHHHHHH-------TSCCCCCCCCC
T ss_pred             hhCCHHHHHHHHHH-------HcCCCCCCCCC
Confidence            99999999999985       48899999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.83  E-value=2e-20  Score=115.19  Aligned_cols=92  Identities=30%  Similarity=0.709  Sum_probs=85.6

Q ss_pred             CCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChH
Q psy3356          62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKS  141 (180)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  141 (180)
                      ..+++|.|.+|++.|.....|..|++.|     .++++|.|..|++.|.....|..|+..|.++++|.|..|++.|....
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   87 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTH-----TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR   87 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHH-----CCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHc-----CCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHH
Confidence            4567899999999999999999999998     78899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         142 ACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       142 ~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      .|..|+++        |.++++|.+
T Consensus        88 ~L~~H~~~--------H~~~~~~~~  104 (106)
T 2ee8_A           88 TLAVHKTL--------HMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHH--------TTSCCCCCC
T ss_pred             HHHHHHHH--------hCCCCCCcC
Confidence            99999997        667888764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=5.1e-20  Score=111.35  Aligned_cols=86  Identities=37%  Similarity=0.769  Sum_probs=80.6

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCCh
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQK  140 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  140 (180)
                      +.++++|.|.+|++.|.....|..|++.|     .+.++|.|+.|++.|.....|..|+..|.++++|.|+.|++.|...
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   77 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCH-----TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS   77 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGC-----CCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhc-----CCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCH
Confidence            45678999999999999999999999988     7889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q psy3356         141 SACNTHKRTHI  151 (180)
Q Consensus       141 ~~l~~H~~~h~  151 (180)
                      ..|..|+++|+
T Consensus        78 ~~l~~H~~~h~   88 (96)
T 2dmd_A           78 SQLTVHLRSHT   88 (96)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHHhc
Confidence            99999999754

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=7e-21  Score=118.97  Aligned_cols=98  Identities=16%  Similarity=0.262  Sum_probs=88.2

Q ss_pred             CCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHh--ccCCCcCCCcc-eeccccCccc--CChhhHHHHHhhcCC
Q psy3356          50 PLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRV--HISYLHVKDKP-YHCTECEATF--SWKQNLEVHMRTHTG  124 (180)
Q Consensus        50 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~~~~~~-~~C~~C~~~~--~~~~~l~~H~~~h~~  124 (180)
                      ....|..|+++|.++++|.|.+|++.|.....|..|++.  +     .+..+ +.|+.|++.|  .....|..|+..|.+
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h-----~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~   77 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGH-----YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA   77 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCC-----CBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCC
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCc-----cccCCCccCCCCCcccccccHHHHHHHhhccCC
Confidence            346788999999999999999999999999999999998  4     44554 4599999998  899999999999999


Q ss_pred             CCceeccccccccCChHHHHHHHHHcCC
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTHIP  152 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  152 (180)
                      +++|.|++|++.|.....|..|++.|++
T Consensus        78 ~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           78 QKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             CcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            9999999999999999999999998753

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.81  E-value=4.4e-20  Score=108.36  Aligned_cols=81  Identities=44%  Similarity=0.904  Sum_probs=76.0

Q ss_pred             CcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHH
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNT  145 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  145 (180)
                      ||.|++|++.|.....|..|++.|     .+++++.|+.|++.|.....|..|+..|.++++|.|+.|++.|.+...|..
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   75 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIH-----SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLIT   75 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH-----HTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHc-----CCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHH
Confidence            588999999999999999999998     788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q psy3356         146 HKRTHI  151 (180)
Q Consensus       146 H~~~h~  151 (180)
                      |+++|+
T Consensus        76 H~~~H~   81 (82)
T 2kmk_A           76 HSRKHT   81 (82)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=2.6e-19  Score=107.98  Aligned_cols=83  Identities=39%  Similarity=0.831  Sum_probs=77.4

Q ss_pred             CCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCC--CceeccccccccCC
Q psy3356          62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE--RPYECEICGKRFSQ  139 (180)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~  139 (180)
                      .++++|.|.+|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|+..|.+.  ++|.|+.|++.|..
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~   77 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSH-----SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR   77 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHS-----CSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhc-----CCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCC
Confidence            4678899999999999999999999998     7889999999999999999999999999887  89999999999999


Q ss_pred             hHHHHHHHHH
Q psy3356         140 KSACNTHKRT  149 (180)
Q Consensus       140 ~~~l~~H~~~  149 (180)
                      ...|..|++.
T Consensus        78 ~~~L~~H~~~   87 (95)
T 2yt9_A           78 PDHLNGHIKQ   87 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.80  E-value=7.7e-20  Score=109.22  Aligned_cols=84  Identities=40%  Similarity=0.979  Sum_probs=76.9

Q ss_pred             CCCCcccc--cchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCCh
Q psy3356          63 GERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQK  140 (180)
Q Consensus        63 ~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  140 (180)
                      ++++|.|+  .|++.|.....|..|++.|     .+.++|.|+.|++.|.....|..|+..|.++++|.|+.|++.|...
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   75 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIH-----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS   75 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHH-----HCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHh-----CCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCH
Confidence            35789998  6999999999999999998     7888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q psy3356         141 SACNTHKRTHI  151 (180)
Q Consensus       141 ~~l~~H~~~h~  151 (180)
                      ..|..|+++|+
T Consensus        76 ~~l~~H~~~H~   86 (90)
T 1a1h_A           76 DERKRHTKIHL   86 (90)
T ss_dssp             HHHHHHHGGGG
T ss_pred             HHHHHHHHHhc
Confidence            99999999753

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.4e-19  Score=112.08  Aligned_cols=86  Identities=37%  Similarity=0.807  Sum_probs=82.0

Q ss_pred             hcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCC
Q psy3356          60 THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQ  139 (180)
Q Consensus        60 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  139 (180)
                      .|.++++|.| .|++.|.....|..|++.|     .+.++|.|+.|++.|.....|..|+..|.++++|.|+.|++.|..
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMH-----LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHH-----SCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHc-----CCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            5778899999 9999999999999999998     788999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHcC
Q psy3356         140 KSACNTHKRTHI  151 (180)
Q Consensus       140 ~~~l~~H~~~h~  151 (180)
                      ...|..|++.|+
T Consensus        78 ~~~l~~H~~~~~   89 (110)
T 2csh_A           78 RDSFHRHVTSCT   89 (110)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=5.7e-19  Score=108.65  Aligned_cols=87  Identities=34%  Similarity=0.665  Sum_probs=79.6

Q ss_pred             ccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          24 VFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        24 ~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +.|+.|++.|.               ....|..|++.|.++++|.|.+|++.|.....|..|++.|     .++++|.|.
T Consensus        18 ~~C~~C~~~f~---------------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~   77 (106)
T 2ee8_A           18 FICKFCGRHFT---------------KSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-----SKEKPFKCQ   77 (106)
T ss_dssp             CBCSSSCCBCS---------------SHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGS-----CCCCTTSCS
T ss_pred             eECCCCCCccC---------------CHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHh-----CCCCCeECC
Confidence            46666666666               9999999999999999999999999999999999999998     788999999


Q ss_pred             ccCcccCChhhHHHHHhhcCCCCceec
Q psy3356         104 ECEATFSWKQNLEVHMRTHTGERPYEC  130 (180)
Q Consensus       104 ~C~~~~~~~~~l~~H~~~h~~~~~~~C  130 (180)
                      .|++.|.....|..|++.|.++++|..
T Consensus        78 ~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           78 ECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            999999999999999999999998764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.6e-18  Score=103.75  Aligned_cols=84  Identities=35%  Similarity=0.634  Sum_probs=77.6

Q ss_pred             ccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          24 VFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        24 ~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +.|+.|++.|.               ....|..|++.|.++++|.|++|++.|.....|..|++.|     .++++|.|+
T Consensus         9 ~~C~~C~~~f~---------------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~   68 (96)
T 2dmd_A            9 HKCEVCGKCFS---------------RKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH-----SDERPFKCQ   68 (96)
T ss_dssp             CCBTTTTBCCC---------------CHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHS-----CCCCCEECS
T ss_pred             eECCCCCCccC---------------CHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHh-----CCCCCccCC
Confidence            47777777776               9999999999999999999999999999999999999998     788999999


Q ss_pred             ccCcccCChhhHHHHHhhcCCCCc
Q psy3356         104 ECEATFSWKQNLEVHMRTHTGERP  127 (180)
Q Consensus       104 ~C~~~~~~~~~l~~H~~~h~~~~~  127 (180)
                      .|++.|.....|..|++.|+++++
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCC
Confidence            999999999999999999998764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=1.4e-18  Score=101.83  Aligned_cols=76  Identities=38%  Similarity=0.692  Sum_probs=68.9

Q ss_pred             eecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcC
Q psy3356          44 FSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        44 C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      |++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.|     .+++++.|+.|++.|.....|..|++.|+
T Consensus         7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A            7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-----TGEKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             SCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHH-----HTCCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHh-----cCCCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            3333339999999999999999999999999999999999999998     78899999999999999999999999886


Q ss_pred             C
Q psy3356         124 G  124 (180)
Q Consensus       124 ~  124 (180)
                      +
T Consensus        82 g   82 (82)
T 2kmk_A           82 G   82 (82)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.3e-18  Score=103.81  Aligned_cols=77  Identities=31%  Similarity=0.697  Sum_probs=71.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCC--CCcccCCCccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKD--RPFHCPACEGM  172 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~--~~~~C~~C~~~  172 (180)
                      .++++|.|..|++.|.+...|..|+..|.++++|.|+.|++.|.....|..|++.|        .++  ++|.|++|++.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------~~~~~~~~~C~~C~~~   74 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH--------DGSVGKPYICQSCGKG   74 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHH--------CCCCCSSBCCSSSCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHh--------cCCCCCceECCCccch
Confidence            67889999999999999999999999999999999999999999999999999985        444  89999999999


Q ss_pred             CCCccCC
Q psy3356         173 FTTKQNL  179 (180)
Q Consensus       173 F~~~~~L  179 (180)
                      |.+.++|
T Consensus        75 f~~~~~L   81 (95)
T 2yt9_A           75 FSRPDHL   81 (95)
T ss_dssp             BSSHHHH
T ss_pred             hCCHHHH
Confidence            9998766

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.73  E-value=5.4e-18  Score=100.90  Aligned_cols=82  Identities=38%  Similarity=0.851  Sum_probs=73.3

Q ss_pred             CCCccccc--chhhccChHHHHHHHHhccCCCcCCCcceecc--ccCcccCChhhHHHHHhhcCCCCceeccccccccCC
Q psy3356          64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQ  139 (180)
Q Consensus        64 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  139 (180)
                      ..+|.|..  |++.|.....|..|++.|     .++++|.|+  .|++.|.....|..|+..|.++++|.|+.|++.|..
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTH-----TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR   77 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTS-----CSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhc-----CCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCC
Confidence            45788988  999999999999999888     778889997  599999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHc
Q psy3356         140 KSACNTHKRTH  150 (180)
Q Consensus       140 ~~~l~~H~~~h  150 (180)
                      ...|..|+++|
T Consensus        78 ~~~l~~H~~~H   88 (89)
T 2wbs_A           78 SDHLALHMKRH   88 (89)
T ss_dssp             HHHHHHHGGGG
T ss_pred             HHHHHHHHHhh
Confidence            99999998875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=101.06  Aligned_cols=84  Identities=36%  Similarity=0.789  Sum_probs=76.1

Q ss_pred             CCCCccccc--chhhccChHHHHHHHHhccCCCcCCCcceecc--ccCcccCChhhHHHHHhhcCCCCceeccccccccC
Q psy3356          63 GERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEICGKRFS  138 (180)
Q Consensus        63 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  138 (180)
                      ..++|.|..  |++.|.....|..|++.|     .+.++|.|+  .|++.|.....|..|+..|.++++|.|++|++.|.
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   86 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTH-----TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS   86 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHH-----SCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHh-----CCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence            356789986  999999999999999988     788899996  69999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHcC
Q psy3356         139 QKSACNTHKRTHI  151 (180)
Q Consensus       139 ~~~~l~~H~~~h~  151 (180)
                      ....|..|+++|+
T Consensus        87 ~~~~l~~H~~~H~   99 (100)
T 2ebt_A           87 RSDHLALHMKRHQ   99 (100)
T ss_dssp             SHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999999863

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.73  E-value=4e-18  Score=101.70  Aligned_cols=78  Identities=29%  Similarity=0.646  Sum_probs=70.2

Q ss_pred             eecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcC
Q psy3356          44 FSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        44 C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      |++.|.....|..|++.|.++++|.|++|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.|.
T Consensus        12 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TGEKPFACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH-----HCCCCEECTTTCCEESSHHHHHHHHGGGG
T ss_pred             CCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHc-----CCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            3333339999999999999999999999999999999999999998     78899999999999999999999999998


Q ss_pred             CCC
Q psy3356         124 GER  126 (180)
Q Consensus       124 ~~~  126 (180)
                      +++
T Consensus        87 ~~k   89 (90)
T 1a1h_A           87 RQK   89 (90)
T ss_dssp             C--
T ss_pred             ccC
Confidence            765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=5.8e-18  Score=104.78  Aligned_cols=76  Identities=34%  Similarity=0.770  Sum_probs=72.0

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT  174 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~  174 (180)
                      .++++|.| .|++.|.....|..|+..|.+.++|.|+.|++.|.....|..|++.        |.++++|.|++|++.|.
T Consensus         6 ~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI--------HTGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT--------TCCCCCEECSSSCCEES
T ss_pred             CCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHH--------cCCCCCeeCCCCcchhc
Confidence            78899999 9999999999999999999999999999999999999999999986        77899999999999999


Q ss_pred             CccCC
Q psy3356         175 TKQNL  179 (180)
Q Consensus       175 ~~~~L  179 (180)
                      +.++|
T Consensus        77 ~~~~l   81 (110)
T 2csh_A           77 WRDSF   81 (110)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            88765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.7e-17  Score=96.59  Aligned_cols=72  Identities=25%  Similarity=0.482  Sum_probs=64.3

Q ss_pred             CCCcceeccc--cCcccCChhhHHHHHh-hcCCCCceeccc--cccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356          95 VKDKPYHCTE--CEATFSWKQNLEVHMR-THTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus        95 ~~~~~~~C~~--C~~~~~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .+++++.|..  |++.|.....|..|++ .|.++++|.|+.  |++.|.....|..|+++        |.+++||.|++|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   74 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL--------HSDTRDYICEFS   74 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHH--------HHTSCCCSCCSS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHH--------hCCCCCeeCCCC
Confidence            5677888887  9999999999999998 788899999998  99999999999999987        668899999999


Q ss_pred             cccCC
Q psy3356         170 EGMFT  174 (180)
Q Consensus       170 ~~~F~  174 (180)
                      +++|.
T Consensus        75 ~k~F~   79 (79)
T 2dlk_A           75 GPSSG   79 (79)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            99884

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2e-17  Score=101.90  Aligned_cols=85  Identities=22%  Similarity=0.296  Sum_probs=77.5

Q ss_pred             ccccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          24 VFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        24 ~~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +.|+.|++.|.               ....|..|++.|.  ++|.|.+|++.|.....|..|+. |     .++++|.|.
T Consensus        17 ~~C~~C~~~f~---------------~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H-----~~~~~~~C~   73 (107)
T 1wjp_A           17 YQCRLCNAKLS---------------SLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-K-----CEYKKLTCL   73 (107)
T ss_dssp             CBCTTTCCBCS---------------SHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-H-----CSTGGGEEG
T ss_pred             eECCCCCCccC---------------CHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-c-----CCCCCccCc
Confidence            48888887777               9999999999984  78999999999999999999995 7     789999999


Q ss_pred             ccCcccCChhhHHHHHh-hcCCCCceecc
Q psy3356         104 ECEATFSWKQNLEVHMR-THTGERPYECE  131 (180)
Q Consensus       104 ~C~~~~~~~~~l~~H~~-~h~~~~~~~C~  131 (180)
                      .|++.|.....|..|++ .|.++++|.+.
T Consensus        74 ~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           74 ECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             GGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999997 89999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.69  E-value=1.8e-17  Score=90.81  Aligned_cols=54  Identities=37%  Similarity=0.771  Sum_probs=41.1

Q ss_pred             CcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356          97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus        97 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ++||.|.+|++.|.....|..|+++|.+++||.|++|++.|.....|..|+++|
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~H   55 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH   55 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCcc
Confidence            567777777777777777777777777777777777777777777777777763

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.3e-19  Score=113.15  Aligned_cols=87  Identities=21%  Similarity=0.352  Sum_probs=75.7

Q ss_pred             HHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhh--cCCCCcee-cccccccc--CChHHHHHHHHHcCCCC
Q psy3356          80 STLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT--HTGERPYE-CEICGKRF--SQKSACNTHKRTHIPYL  154 (180)
Q Consensus        80 ~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~--h~~~~~~~-C~~C~~~f--~~~~~l~~H~~~h~~~~  154 (180)
                      ..|..|+++|     .++++|.|..|++.|.....|..|++.  |.+.+++. |+.|++.|  .....|..|+++     
T Consensus         5 ~~l~~H~~~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~-----   74 (115)
T 2dmi_A            5 SSGKLYGSIF-----TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK-----   74 (115)
T ss_dssp             CCCCCCCCCC-----CCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS-----
T ss_pred             hhhhhheeee-----CCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc-----
Confidence            3456677766     789999999999999999999999998  76666654 99999999  889999999875     


Q ss_pred             CCcCCCCCCcccCCCcccCCCccCC
Q psy3356         155 PRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       155 ~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                         |.+++||.|++|++.|.+.++|
T Consensus        75 ---H~~~~~~~C~~C~k~f~~~~~L   96 (115)
T 2dmi_A           75 ---EDAQKVLKCMYCGHSFESLQDL   96 (115)
T ss_dssp             ---CCCCSSCBCSSSCCBCSSHHHH
T ss_pred             ---cCCCcceECCCCCCccCCHHHH
Confidence               7899999999999999998776

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=4.5e-17  Score=96.25  Aligned_cols=83  Identities=29%  Similarity=0.501  Sum_probs=48.3

Q ss_pred             hhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccc
Q psy3356          53 VPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEI  132 (180)
Q Consensus        53 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  132 (180)
                      ++.+|+++|.++++|.|.+|++.|.....|..|++.++... ...++|.|..|++.|.....|..|++.|++++++.|..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~-~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~   80 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN-FVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGEN   80 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS-CCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc-CCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCC
Confidence            35567777777777777777777777777777776553100 00144555555555555555555555555555555555


Q ss_pred             cccc
Q psy3356         133 CGKR  136 (180)
Q Consensus       133 C~~~  136 (180)
                      |+..
T Consensus        81 ~~~~   84 (86)
T 1x6h_A           81 SGPS   84 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.69  E-value=2.9e-18  Score=101.95  Aligned_cols=82  Identities=22%  Similarity=0.448  Sum_probs=75.9

Q ss_pred             CCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHH
Q psy3356          64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSAC  143 (180)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  143 (180)
                      ++||.|++|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|+..|++ .+|.|+.|++.|.....|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L   74 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTH-----TGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHL   74 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH-----HCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHc-----CCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhh
Confidence            46899999999999999999999998     788999999999999999999999999885 789999999999999999


Q ss_pred             HHHHHHcC
Q psy3356         144 NTHKRTHI  151 (180)
Q Consensus       144 ~~H~~~h~  151 (180)
                      ..|++.++
T Consensus        75 ~~H~~~~h   82 (88)
T 1llm_C           75 ENEVARLK   82 (88)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.68  E-value=7.4e-17  Score=95.01  Aligned_cols=78  Identities=28%  Similarity=0.613  Sum_probs=71.5

Q ss_pred             Cccc--ccchhhccChHHHHHHHHhccCCCcCCCcceeccc--cCcccCChhhHHHHHhhcCCCCceeccc---cccccC
Q psy3356          66 PFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEVHMRTHTGERPYECEI---CGKRFS  138 (180)
Q Consensus        66 ~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~  138 (180)
                      ||.|  +.|++.|.....|..|++.|     .+++++.|+.  |++.|.....|..|++.|.+   |.|+.   |++.|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~   72 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSH-----TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGK   72 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH-----HTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEES
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHh-----CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccC
Confidence            5789  88999999999999999988     7889999988  99999999999999999987   99999   999999


Q ss_pred             ChHHHHHHHHHcC
Q psy3356         139 QKSACNTHKRTHI  151 (180)
Q Consensus       139 ~~~~l~~H~~~h~  151 (180)
                      ....|..|++.||
T Consensus        73 ~~~~l~~H~~~hh   85 (85)
T 2j7j_A           73 TWTLYLKHVAECH   85 (85)
T ss_dssp             SHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999998863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.67  E-value=5.8e-17  Score=88.79  Aligned_cols=58  Identities=34%  Similarity=0.796  Sum_probs=54.7

Q ss_pred             CCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCC
Q psy3356          64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER  126 (180)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  126 (180)
                      ++||.|.+|++.|.....|..|+++|     .++++|.|.+|++.|.....|..|+++|.+++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~H-----t~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAH-----LGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHH-----HTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHh-----CCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            68999999999999999999999999     89999999999999999999999999998764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=5.7e-17  Score=95.77  Aligned_cols=79  Identities=24%  Similarity=0.505  Sum_probs=70.9

Q ss_pred             HHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCC----CceeccccccccCChHHHHHHHHHcCCCCCCc
Q psy3356          82 LNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE----RPYECEICGKRFSQKSACNTHKRTHIPYLPRV  157 (180)
Q Consensus        82 l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  157 (180)
                      |..|+++|     .++++|.|..|++.|.....|..|+..++..    ++|.|+.|++.|.....|..|++.        
T Consensus         3 ~~~H~~~H-----~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~--------   69 (86)
T 1x6h_A            3 SGSSGRTH-----TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN--------   69 (86)
T ss_dssp             TTCCSTTC-----CCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH--------
T ss_pred             ccccccee-----cCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH--------
Confidence            44566777     7899999999999999999999999887765    789999999999999999999997        


Q ss_pred             CCCCCCcccCCCcccC
Q psy3356         158 HPKDRPFHCPACEGMF  173 (180)
Q Consensus       158 h~~~~~~~C~~C~~~F  173 (180)
                      |.+++++.|..|+.+|
T Consensus        70 h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           70 CAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCCCSCCCCCCCCCC
T ss_pred             ccCCCCcccCCCCCCC
Confidence            7789999999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.66  E-value=1.5e-16  Score=94.61  Aligned_cols=74  Identities=36%  Similarity=0.791  Sum_probs=67.3

Q ss_pred             ecccCCCchhhhHhhhcCCCCCcccc--cchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhc
Q psy3356          45 SFLFGPLLVPQIHMRTHTGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        45 ~~~~~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h  122 (180)
                      ++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.|
T Consensus        14 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           14 GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH-----TGHRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHH-----HCCCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHc-----CCCCCccCCCCCcccCCHHHHHHHHHhh
Confidence            33333999999999999999999997  5999999999999999998     7889999999999999999999999987


Q ss_pred             C
Q psy3356         123 T  123 (180)
Q Consensus       123 ~  123 (180)
                      .
T Consensus        89 ~   89 (89)
T 2wbs_A           89 F   89 (89)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.65  E-value=3.4e-16  Score=95.01  Aligned_cols=76  Identities=36%  Similarity=0.737  Sum_probs=68.7

Q ss_pred             eecccCCCchhhhHhhhcCCCCCcccc--cchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhh
Q psy3356          44 FSFLFGPLLVPQIHMRTHTGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT  121 (180)
Q Consensus        44 C~~~~~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~  121 (180)
                      |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.
T Consensus        23 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-----TGAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             CCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHH-----TSCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHh-----CCCCCeECCCCcCccCCHHHHHHHHHH
Confidence            333333999999999999999999996  6999999999999999998     788999999999999999999999998


Q ss_pred             cCC
Q psy3356         122 HTG  124 (180)
Q Consensus       122 h~~  124 (180)
                      |.+
T Consensus        98 H~~  100 (100)
T 2ebt_A           98 HQN  100 (100)
T ss_dssp             HCC
T ss_pred             hCC
Confidence            863

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.9e-16  Score=91.27  Aligned_cols=72  Identities=36%  Similarity=0.855  Sum_probs=66.0

Q ss_pred             CCCCCccccc--chhhccChHHHHHHHH-hccCCCcCCCcceeccc--cCcccCChhhHHHHHhhcCCCCceeccccccc
Q psy3356          62 TGERPFECDV--CGKRFAQKSTLNTHKR-VHISYLHVKDKPYHCTE--CEATFSWKQNLEVHMRTHTGERPYECEICGKR  136 (180)
Q Consensus        62 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~  136 (180)
                      .++++|.|..  |++.|.....|..|++ .|     .++++|.|+.  |++.|.....|..|++.|.++++|.|+.|++.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H-----~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~   77 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH-----IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS   77 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGG-----GSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHh-----CCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence            4567888886  9999999999999998 57     7889999999  99999999999999999999999999999998


Q ss_pred             cC
Q psy3356         137 FS  138 (180)
Q Consensus       137 f~  138 (180)
                      |.
T Consensus        78 F~   79 (79)
T 2dlk_A           78 SG   79 (79)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=5.6e-16  Score=89.65  Aligned_cols=64  Identities=42%  Similarity=0.813  Sum_probs=48.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      .++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++        |++++||.|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~--------H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV--------HTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGG--------SCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHH--------hCCCCCCCC
Confidence            4566777777777777777777777777777777777777777777777777765        667777776

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=5.4e-16  Score=94.09  Aligned_cols=69  Identities=19%  Similarity=0.329  Sum_probs=56.1

Q ss_pred             CCCcceeccccCcccCChhhHHHHHh-hc---CCCCceeccccccccCChHHHHHH-HHHcCCCCCCcCCCCCCcccCCC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMR-TH---TGERPYECEICGKRFSQKSACNTH-KRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .++++|.|..|++.|.....|..|++ .|   .+++||.|..|++.|.....|..| +++        |++++||.|.++
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~--------Htgekpy~C~~~   85 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY--------HPGEENFKLTMV   85 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHT--------STTCCCEEEEEC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh--------cCCCCCeeCCcc
Confidence            57788888888888888888888886 47   457888898899999888888888 564        778888888875


Q ss_pred             cc
Q psy3356         170 EG  171 (180)
Q Consensus       170 ~~  171 (180)
                      ..
T Consensus        86 ~~   87 (102)
T 2ghf_A           86 KR   87 (102)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.59  E-value=1.5e-17  Score=98.79  Aligned_cols=74  Identities=32%  Similarity=0.733  Sum_probs=67.9

Q ss_pred             CcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCc
Q psy3356          97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK  176 (180)
Q Consensus        97 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~  176 (180)
                      +++|.|+.|++.|.....|..|+..|.++++|.|+.|++.|.....|..|++.|+         ..+|.|+.|++.|.+.
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~---------~~~~~c~~C~~~f~~~   71 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH---------ILPILEDKVEELLSKN   71 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT---------HHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC---------CCcchHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999999853         3789999999999887


Q ss_pred             cCC
Q psy3356         177 QNL  179 (180)
Q Consensus       177 ~~L  179 (180)
                      .+|
T Consensus        72 ~~L   74 (88)
T 1llm_C           72 YHL   74 (88)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            665

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.6e-15  Score=87.74  Aligned_cols=68  Identities=38%  Similarity=0.772  Sum_probs=62.9

Q ss_pred             hhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceec
Q psy3356          58 MRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC  130 (180)
Q Consensus        58 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  130 (180)
                      ...+.++++|.|.+|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.|.+++||.|
T Consensus        10 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTH-----TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTT-----CCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCcCCCCCCEECCCCCcccCCHHHHHHHHHHc-----CCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34556788999999999999999999999988     788999999999999999999999999999999987

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=3.3e-15  Score=85.68  Aligned_cols=62  Identities=45%  Similarity=1.037  Sum_probs=50.4

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPF  164 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~  164 (180)
                      .+.++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++        |++++||
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI--------HSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHH--------HCCSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHh--------cCCCCCC
Confidence            5677788888888888888888888888888888888888888888888888886        5566665

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.58  E-value=1.8e-15  Score=89.02  Aligned_cols=71  Identities=28%  Similarity=0.458  Sum_probs=64.1

Q ss_pred             ecccCCCchhhhHhhhcCCCCCccccc--chhhccChHHHHHHHHhccCCCcCCCcceeccc---cCcccCChhhHHHHH
Q psy3356          45 SFLFGPLLVPQIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE---CEATFSWKQNLEVHM  119 (180)
Q Consensus        45 ~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~---C~~~~~~~~~l~~H~  119 (180)
                      ++.|.....|..|+++|.++++|.|++  |++.|.....|..|++.|     .+   +.|..   |++.|.....|..|+
T Consensus        10 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----~~---~~C~~~~~C~~~f~~~~~l~~H~   81 (85)
T 2j7j_A           10 GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH-----AG---YPCKKDDSCSFVGKTWTLYLKHV   81 (85)
T ss_dssp             CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHH-----HS---EECCSCSSCCCEESSHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHh-----CC---CCCCCCCCCCCccCCHHHHHHHH
Confidence            333339999999999999999999998  999999999999999998     44   99999   999999999999999


Q ss_pred             hhcC
Q psy3356         120 RTHT  123 (180)
Q Consensus       120 ~~h~  123 (180)
                      +.|+
T Consensus        82 ~~hh   85 (85)
T 2j7j_A           82 AECH   85 (85)
T ss_dssp             HHCC
T ss_pred             HhcC
Confidence            8874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=5.9e-15  Score=86.51  Aligned_cols=55  Identities=20%  Similarity=0.413  Sum_probs=48.1

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHH
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      .+.+++.|++|++.|.....|..|++.|++++||.|++|++.|.....|..|++.
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            4667788999999999999999999999889999999999999999999999865

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-15  Score=92.50  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             CCchhhhHhhhcCCCCCcccccchhhcc-ChHHHHHHHHhccCCCcCC-CcceeccccCcccCChhhHHHHHhhcCCCCc
Q psy3356          50 PLLVPQIHMRTHTGERPFECDVCGKRFA-QKSTLNTHKRVHISYLHVK-DKPYHCTECEATFSWKQNLEVHMRTHTGERP  127 (180)
Q Consensus        50 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~~~~~~-~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~  127 (180)
                      ....+..|+++|.++++|.|.+|++.|. ....|..|++.|     .+ +++|.|.+|++.|.....|..|++.|++++|
T Consensus         8 ~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h-----~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVC-----QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHH-----HHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHH-----cCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4555666777777777777777777777 777777777666     44 5566666666666666666666666666555


Q ss_pred             e
Q psy3356         128 Y  128 (180)
Q Consensus       128 ~  128 (180)
                      .
T Consensus        83 ~   83 (98)
T 2gqj_A           83 S   83 (98)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=6.7e-15  Score=88.64  Aligned_cols=70  Identities=21%  Similarity=0.356  Sum_probs=61.3

Q ss_pred             hccChHHHHHHHHhccCCCcCCCcceeccccCccc-CChhhHHHHHhhcCCCCceeccccccccCChHHHHHH-HHHc
Q psy3356          75 RFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATF-SWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTH-KRTH  150 (180)
Q Consensus        75 ~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h  150 (180)
                      .|.....+..|++.+     .++++|.|+.|++.| .....|..|++.| ++++|.|.+|++.|.....|..| +++|
T Consensus        15 ~~~~~~~~~~~~~~~-----~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEI-----VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             SSCTTCHHHHHHHHH-----HHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CCCCchHHHHHHHHh-----cCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            455667788888877     678899999999999 8999999999999 99999999999999999999999 7763

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2.4e-15  Score=91.08  Aligned_cols=70  Identities=19%  Similarity=0.314  Sum_probs=63.4

Q ss_pred             cChHHHHHHHHhccCCCcCCCcceeccccCcccC-ChhhHHHHHhhcCC-CCceeccccccccCChHHHHHHHHHcC
Q psy3356          77 AQKSTLNTHKRVHISYLHVKDKPYHCTECEATFS-WKQNLEVHMRTHTG-ERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        77 ~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .....+..|++.|     .++++|.|..|++.|. ....|..|++.|++ +++|.|.+|++.|.....|..|++.|+
T Consensus         7 ~~~~~~~~h~~~h-----~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A            7 GPGGPEEQWQRAI-----HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CCCCSCSHHHHTT-----TTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CCCCcHHHHHHHh-----ccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHc
Confidence            3445577888888     8899999999999999 99999999999998 899999999999999999999999854

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=82.71  Aligned_cols=65  Identities=42%  Similarity=0.915  Sum_probs=59.7

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCce
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPY  128 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  128 (180)
                      ..+.++++|.|.+|++.|.....|..|++.|     .++++|.|..|++.|.....|..|++.|.+++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVH-----TGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHH-----CCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHc-----CCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3556788999999999999999999999998     7889999999999999999999999999998875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.1e-14  Score=84.08  Aligned_cols=64  Identities=34%  Similarity=0.758  Sum_probs=33.6

Q ss_pred             hhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCC-cceeccccCcccCChhhHHHHHhh
Q psy3356          54 PQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKD-KPYHCTECEATFSWKQNLEVHMRT  121 (180)
Q Consensus        54 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~-~~~~C~~C~~~~~~~~~l~~H~~~  121 (180)
                      +.+|+++|.++++|.|++|++.|.....|..|++..+    .++ ++|.|+.|++.|.....|..|++.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h----~~~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH----TENVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHS----SSSCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhc----CCCCCccCCCCCCCccCCHHHHHHHHHH
Confidence            3456666666666666666666666666666654221    222 344444444444444444444443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.51  E-value=3.6e-15  Score=94.71  Aligned_cols=81  Identities=19%  Similarity=0.293  Sum_probs=70.0

Q ss_pred             CCCcccccchhhcc------ChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceecccccccc
Q psy3356          64 ERPFECDVCGKRFA------QKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRF  137 (180)
Q Consensus        64 ~~~~~C~~C~~~f~------~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  137 (180)
                      ++.+.|.+|.+.|.      ....|..|+ .|     .++++|.|..|++.|.....|..|+..|  ++||.|+.|++.|
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h-----~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f  110 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-AS-----KAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEF  110 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HH-----HHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBC
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-Hh-----CCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCccc
Confidence            45678888888776      556677776 45     6789999999999999999999999998  8899999999999


Q ss_pred             CChHHHHHHHHHcCC
Q psy3356         138 SQKSACNTHKRTHIP  152 (180)
Q Consensus       138 ~~~~~l~~H~~~h~~  152 (180)
                      .....|..|++.|++
T Consensus       111 ~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A          111 TSTDSALDHVCKKHN  125 (129)
T ss_dssp             SSHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHCC
Confidence            999999999998764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.3e-14  Score=86.94  Aligned_cols=75  Identities=21%  Similarity=0.433  Sum_probs=63.8

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHHHHh-ccCCCcCCCcceeccccCcccCChhhHHHH-HhhcCCCCceecccccc
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTHKRV-HISYLHVKDKPYHCTECEATFSWKQNLEVH-MRTHTGERPYECEICGK  135 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H-~~~h~~~~~~~C~~C~~  135 (180)
                      ..-.+++||.|.+|++.|.....|..|++. |...  .++++|.|..|++.|.....|..| ++.|.+++||.|.++..
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~--~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV--VLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC--CCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC--CCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            344578999999999999999999999975 5110  247899999999999999999999 89999999999987553

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.51  E-value=1.7e-14  Score=78.36  Aligned_cols=55  Identities=36%  Similarity=0.712  Sum_probs=43.0

Q ss_pred             CcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcC
Q psy3356          97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        97 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      +++|.|+.|++.|.....|..|+..|.++++|.|+.|++.|.....|..|++.|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4677888888888888888888888888888888888888888888888887753

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=4.2e-14  Score=80.11  Aligned_cols=57  Identities=30%  Similarity=0.594  Sum_probs=48.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .++++|.|..|++.|.....|..|+..|.++++|.|+.|++.|.....|..|++.|+
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   61 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH   61 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHh
Confidence            577888888888888888888888888888888888888888888888888888754

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=2.1e-14  Score=81.88  Aligned_cols=56  Identities=50%  Similarity=0.911  Sum_probs=37.4

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|.....|..|+++|
T Consensus        10 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A           10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            45566666666666666666666666666666667766777776666677776664

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=9.6e-15  Score=84.37  Aligned_cols=63  Identities=29%  Similarity=0.612  Sum_probs=56.0

Q ss_pred             HHHHhccCCCcCCCcceeccccCcccCChhhHHHHHh-hcCCC-CceeccccccccCChHHHHHHHHHcC
Q psy3356          84 THKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR-THTGE-RPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        84 ~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .|+++|     .++++|.|+.|++.|.....|..|+. .|.++ ++|.|+.|++.|.....|..|++.++
T Consensus         5 ~H~~~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            5 SSGRTH-----SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCC-----SCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             cccccc-----CCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            455566     78999999999999999999999997 67664 89999999999999999999999864

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=4.3e-14  Score=85.08  Aligned_cols=78  Identities=13%  Similarity=0.228  Sum_probs=68.3

Q ss_pred             ccCCCchhhhHhhhcCCCCCcccccchhhc-cChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHH-HhhcCC
Q psy3356          47 LFGPLLVPQIHMRTHTGERPFECDVCGKRF-AQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH-MRTHTG  124 (180)
Q Consensus        47 ~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H-~~~h~~  124 (180)
                      .|.....+..|++.+.++++|.|++|++.| .....|..|+++|      ++++|.|.+|++.|.....|..| +..|.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h------~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC------KQEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH------CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH------CCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            344778889999999999999999999999 9999999999987      46899999999999999999999 888876


Q ss_pred             CCceec
Q psy3356         125 ERPYEC  130 (180)
Q Consensus       125 ~~~~~C  130 (180)
                      +..|.+
T Consensus        89 ~p~~~~   94 (96)
T 2ctd_A           89 LPSGPS   94 (96)
T ss_dssp             CSSCSC
T ss_pred             CCCCCC
Confidence            554443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.9e-14  Score=80.25  Aligned_cols=64  Identities=27%  Similarity=0.593  Sum_probs=58.4

Q ss_pred             hcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCce
Q psy3356          60 THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPY  128 (180)
Q Consensus        60 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  128 (180)
                      .+.++++|.|.+|++.|.....|..|++.|     .++++|.|..|++.|.....|..|++.|++++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIH-----CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGG-----CCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHc-----CCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            466789999999999999999999999988     7889999999999999999999999999988764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=5.6e-14  Score=80.05  Aligned_cols=65  Identities=43%  Similarity=0.820  Sum_probs=59.7

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCC
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER  126 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  126 (180)
                      +.++|.++++|.|++|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.|.++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h-----~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH-----TGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGG-----GCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhc-----CCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            356788999999999999999999999999998     78899999999999999999999999987654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.46  E-value=3.8e-15  Score=94.61  Aligned_cols=105  Identities=19%  Similarity=0.288  Sum_probs=77.5

Q ss_pred             hcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccC------ChhhHHHHHhhcCCCCceecccc
Q psy3356          60 THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFS------WKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        60 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~------~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .+.+.++|.|...+.....  .+..+.+.+..  ....+.+.|++|...|.      ....|..|+ .|.+++||.|+.|
T Consensus         6 ~~~~~k~~~~~~k~~~~~~--s~ee~~~~~~l--~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C   80 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHV--TLEELKRYHQL--TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLC   80 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEEC--CHHHHHHHTTS--CHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTT
T ss_pred             hcccccccccccCCeeeee--cHHhhhccccC--ChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCC
Confidence            5667888988775544332  23334333211  13456677888776655      556676666 6888999999999


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCccCC
Q psy3356         134 GKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       134 ~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      ++.|.....|..|+++        |  ++||.|+.|++.|.+.++|
T Consensus        81 ~k~f~~~~~l~~H~~~--------H--~~~~~C~~C~k~f~~~~~l  116 (129)
T 2wbt_A           81 LMPFSSSVSLKQHIRY--------T--EHTKVCPVCKKEFTSTDSA  116 (129)
T ss_dssp             CCEESSHHHHHHHHHH--------T--CCCCBCTTTCCBCSSHHHH
T ss_pred             CcccCCHhHHHHHHHH--------C--CCCCCCCCCCcccCCHHHH
Confidence            9999999999999997        6  7899999999999998766

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.6e-16  Score=90.01  Aligned_cols=31  Identities=29%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             CchhhhHhhhcCCCCCcccccchhhccChHH
Q psy3356          51 LLVPQIHMRTHTGERPFECDVCGKRFAQKST   81 (180)
Q Consensus        51 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (180)
                      ...|..|+++|.++++|.|++|++.|.....
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~   33 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRST   33 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHH
Confidence            4556677777777777777777777766543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.45  E-value=1.7e-13  Score=74.29  Aligned_cols=52  Identities=35%  Similarity=0.695  Sum_probs=43.5

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +|.|+.|++.|.....|..|+..|.++++|.|+.|++.|.....|..|+++|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHh
Confidence            4678888888888888888888888888888888888888888888888864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=8.5e-14  Score=77.86  Aligned_cols=57  Identities=25%  Similarity=0.530  Sum_probs=45.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhh-c-CCCCceeccccccccCChHHHHHHHHHcC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRT-H-TGERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .++++|.|+.|++.|.....|..|+.. | .++++|.|+.|++.|.....|..|++.++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            567778888888888888888888876 5 46788888888888888888888887754

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.7e-13  Score=79.22  Aligned_cols=64  Identities=28%  Similarity=0.517  Sum_probs=51.8

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCC---CCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTG---ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFH  165 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~  165 (180)
                      .++++|.|..|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|++.+       |.++++..
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~-------H~~~~~~~   69 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS-------HPALLLAP   69 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHT-------STTTSSCC
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHh-------CCCCCCCc
Confidence            677888888888888888888888888875   78899999999999999999998763       55555543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=2.1e-13  Score=79.91  Aligned_cols=63  Identities=29%  Similarity=0.522  Sum_probs=55.2

Q ss_pred             hhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHh-hcCCC
Q psy3356          58 MRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR-THTGE  125 (180)
Q Consensus        58 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~  125 (180)
                      +..+...++|.|++|++.|.....|..|+++|     .++++|.|..|++.|.....|..|++ .|.++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLL-----HAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTT-----SCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhc-----cCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            45566778899999999999999999999998     78899999999999999999999974 56654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.43  E-value=1.4e-13  Score=74.62  Aligned_cols=57  Identities=39%  Similarity=0.706  Sum_probs=48.3

Q ss_pred             CCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCC
Q psy3356          63 GERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      ++++|.|++|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTH-----TGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHH-----HCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHc-----CCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357899999999999999999999988     788899999999999999999999988763

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=2.7e-13  Score=74.31  Aligned_cols=50  Identities=30%  Similarity=0.818  Sum_probs=40.4

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHH
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKR  148 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  148 (180)
                      +|.|+.|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            57788888888888888888888888888888888888888888888864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.40  E-value=4.6e-13  Score=72.53  Aligned_cols=56  Identities=38%  Similarity=0.775  Sum_probs=49.2

Q ss_pred             CcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCC
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER  126 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  126 (180)
                      ||.|++|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTH-----TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHT-----SSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhc-----CCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            578999999999999999999888     78888999999999999999999998887654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2.1e-13  Score=76.21  Aligned_cols=63  Identities=25%  Similarity=0.497  Sum_probs=55.8

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCC
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      .+|.++++|.|++|++.|.....|..|++.+|.   .++++|.|+.|++.|.....|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~---~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK---RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS---SSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcC---CCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            567889999999999999999999999988421   377899999999999999999999998865

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.40  E-value=4.8e-13  Score=71.73  Aligned_cols=49  Identities=31%  Similarity=0.618  Sum_probs=42.0

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK  176 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~  176 (180)
                      .+.++++|.|+.|++.|.....|..|++.       +|.+++||.|++|++.|++.
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~-------~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQ-------VHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHH-------TSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHH-------hcCCCCCccCCCCCCCCCCC
Confidence            45678899999999999999999999873       37889999999999999863

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2.2e-16  Score=90.27  Aligned_cols=69  Identities=19%  Similarity=0.396  Sum_probs=60.5

Q ss_pred             HHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCC
Q psy3356          81 TLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPK  160 (180)
Q Consensus        81 ~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~  160 (180)
                      .|..|++.|     .++++|.|..|++.|.....|..       +++|.|+.|++.|.....|..|+++        |.+
T Consensus         5 ~l~~H~~~h-----~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~--------H~~   64 (73)
T 2ctu_A            5 SSGKRQKIH-----LGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGN--------ESG   64 (73)
T ss_dssp             SCCCCCCCC-----CCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSC--------CCC
T ss_pred             hHHHHHHHh-----CCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHh--------hcC
Confidence            455666666     78899999999999999888765       7889999999999999999999875        789


Q ss_pred             CCCcccCCC
Q psy3356         161 DRPFHCPAC  169 (180)
Q Consensus       161 ~~~~~C~~C  169 (180)
                      ++||.|++|
T Consensus        65 ~~~~~C~~C   73 (73)
T 2ctu_A           65 KKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCC
T ss_pred             CCCCCCCCC
Confidence            999999988

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.7e-13  Score=80.71  Aligned_cols=60  Identities=28%  Similarity=0.394  Sum_probs=39.5

Q ss_pred             eeccccCcccCChhhHHHHHhh-cCCCCc--------eeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         100 YHCTECEATFSWKQNLEVHMRT-HTGERP--------YECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      +.|..|++.|.....|..|++. |.+.++        |.|+.|++.|.....|..|+++        |++++||.|+
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV--------HTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHH--------HHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHh--------cCCCCCCCCC
Confidence            3455555555555555555554 444444        7788888888888888888876        5677788775

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=7.2e-13  Score=75.51  Aligned_cols=56  Identities=43%  Similarity=0.921  Sum_probs=44.3

Q ss_pred             CCCcceecc--ccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356          95 VKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus        95 ~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .++++|.|+  .|++.|.....|..|+..|.++++|.|+.|++.|.....|..|+++|
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            567778886  48888888888888888888888888888888888888888887764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=9.2e-13  Score=76.08  Aligned_cols=68  Identities=25%  Similarity=0.474  Sum_probs=56.2

Q ss_pred             hcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHh-hcCCCCcee
Q psy3356          60 THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR-THTGERPYE  129 (180)
Q Consensus        60 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~  129 (180)
                      .|.++++|.|.+|++.|.....|..|++.|...  .++++|.|..|++.|.....|..|++ .|.+..+..
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~--~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAET--VAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHH--TTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc--CCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            367889999999999999999999999998210  03789999999999999999999994 565555543

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=6.9e-13  Score=68.60  Aligned_cols=44  Identities=32%  Similarity=0.584  Sum_probs=39.2

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL--------HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHH--------CCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHh--------cCCCCCCCCCCC
Confidence            66788889999999999999999999999986        778899999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=8.3e-13  Score=68.31  Aligned_cols=45  Identities=38%  Similarity=0.740  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .|+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHT--------TSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            366788889999999999999999999999986        778999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1e-12  Score=67.99  Aligned_cols=45  Identities=33%  Similarity=0.609  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .|+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI--------HTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHH--------TSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            367788889999999999999999999999986        778899999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=8.2e-13  Score=68.34  Aligned_cols=44  Identities=34%  Similarity=0.702  Sum_probs=39.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV--------HTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHH--------TTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            66778889999999999999999999999886        778899999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.3e-13  Score=68.78  Aligned_cols=44  Identities=34%  Similarity=0.659  Sum_probs=38.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTT--------TCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhh--------cCCCCCCCCCCC
Confidence            66778888999999999999999999999885        778899999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=6.6e-13  Score=68.02  Aligned_cols=44  Identities=32%  Similarity=0.593  Sum_probs=37.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT--------HAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHH--------HTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            45678888889999999999999999999886        668888999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.2e-13  Score=68.80  Aligned_cols=44  Identities=32%  Similarity=0.633  Sum_probs=38.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGG--------TSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhh--------cCCCCCCCCCCC
Confidence            56778888999999999999999999999875        778899999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=3e-12  Score=70.04  Aligned_cols=56  Identities=38%  Similarity=0.839  Sum_probs=48.8

Q ss_pred             CCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHH-hhcCCC
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHM-RTHTGE  125 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~-~~h~~~  125 (180)
                      +||.|++|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|+ ..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSH-----TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT-----TSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHh-----CCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            4789999999999999999999988     7888999999999999999999997 566553

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=9.3e-13  Score=68.10  Aligned_cols=45  Identities=36%  Similarity=0.526  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .|++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT--------HVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHH--------CCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            366788889999999999999999999999986        778899999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=7.5e-13  Score=68.47  Aligned_cols=44  Identities=34%  Similarity=0.582  Sum_probs=38.7

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHH--------HSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            66788889999999999999999999999886        678899999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.32  E-value=6e-13  Score=68.84  Aligned_cols=45  Identities=33%  Similarity=0.529  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .|++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS--------HTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGG--------SSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            366778888899999999999999999999875        778889999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.7e-13  Score=68.68  Aligned_cols=44  Identities=36%  Similarity=0.756  Sum_probs=37.9

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI--------HSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGG--------GSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHH--------hcCCCCCCCCCC
Confidence            66778888899999999999999999999886        678889999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.4e-13  Score=68.49  Aligned_cols=44  Identities=32%  Similarity=0.607  Sum_probs=38.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTT--------TCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            56778889999999999999999999999875        778899999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.9e-13  Score=68.39  Aligned_cols=44  Identities=34%  Similarity=0.668  Sum_probs=38.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI--------HTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHH--------HTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHH--------cCCCCCCCCCCC
Confidence            66778888999999999999999999999886        678899999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.1e-13  Score=68.56  Aligned_cols=44  Identities=41%  Similarity=0.699  Sum_probs=38.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT--------HAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHH--------HTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            66778888999999999999999999999886        668889999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.31  E-value=7.3e-13  Score=68.53  Aligned_cols=45  Identities=38%  Similarity=0.675  Sum_probs=38.7

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      +|++.|.++++|.|++|++.|.....|..|+++        |++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHH--------HSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            366778888999999999999999999999986        678899999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.7e-13  Score=68.65  Aligned_cols=44  Identities=36%  Similarity=0.648  Sum_probs=38.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI--------HTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGG--------GSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            66778888899999999999999999999876        678899999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=7.7e-13  Score=68.46  Aligned_cols=44  Identities=25%  Similarity=0.495  Sum_probs=38.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|++|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTT--------TSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            66778888999999999999999999999875        778899999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.5e-13  Score=68.28  Aligned_cols=44  Identities=34%  Similarity=0.662  Sum_probs=38.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTT--------TTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56778888999999999999999999999875        778899999887

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.31  E-value=1e-13  Score=76.57  Aligned_cols=53  Identities=21%  Similarity=0.515  Sum_probs=44.9

Q ss_pred             HHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcccCCCccCC
Q psy3356         116 EVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL  179 (180)
Q Consensus       116 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~~F~~~~~L  179 (180)
                      ..|++.|.+++||.|+.|++.|.....|.   +        +|++++||.|+.|++.|...+++
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~--------~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---L--------FDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---H--------EETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---h--------hcCCCCCEECCCCCCccccCccc
Confidence            35677889999999999999999888775   3        48899999999999999887765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.1e-13  Score=68.59  Aligned_cols=44  Identities=30%  Similarity=0.597  Sum_probs=37.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGG--------TSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56778888889999999999998899998875        678888988877

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=67.56  Aligned_cols=44  Identities=34%  Similarity=0.764  Sum_probs=38.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS--------HSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHH--------SCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56678888999999999999999999999886        778899999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=9.3e-13  Score=68.14  Aligned_cols=44  Identities=39%  Similarity=0.637  Sum_probs=38.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT--------HSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTT--------TCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56678888999999999999999999999875        778899999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.7e-13  Score=68.22  Aligned_cols=45  Identities=36%  Similarity=0.552  Sum_probs=39.1

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      +|++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI--------HTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTT--------TTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            366788889999999999999999999999875        778899999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.31  E-value=6.7e-13  Score=68.68  Aligned_cols=44  Identities=36%  Similarity=0.691  Sum_probs=37.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHH--------HSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            56678888889999999999999999999886        668888999887

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.2e-12  Score=77.27  Aligned_cols=62  Identities=27%  Similarity=0.391  Sum_probs=53.0

Q ss_pred             CCcccccchhhccChHHHHHHHHh-ccCCCcCCCcc--------eeccccCcccCChhhHHHHHhhcCCCCceecc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRV-HISYLHVKDKP--------YHCTECEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~~~~--------~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      ..+.|++|++.|.....|..|++. |     .+..+        +.|..|++.|.....|..|++.|.+++||.|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H-----~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEH-----VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTT-----TCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhc-----cCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            346799999999999999999887 5     55555        88999999999999999999999999999886

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=9.4e-13  Score=68.09  Aligned_cols=45  Identities=29%  Similarity=0.609  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .|+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGG--------GCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHh--------cCCCCCCCCCCC
Confidence            366778888899999999999999999999875        678889999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=9.1e-13  Score=68.14  Aligned_cols=44  Identities=27%  Similarity=0.434  Sum_probs=38.9

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV--------HMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTT--------TCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            66788889999999999999999999999875        778999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=7.4e-13  Score=68.50  Aligned_cols=44  Identities=32%  Similarity=0.617  Sum_probs=37.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTG--------GGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHh--------cCCCCCCCCCCC
Confidence            66778888899999999999999999999876        678889999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8e-13  Score=68.37  Aligned_cols=44  Identities=34%  Similarity=0.651  Sum_probs=38.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHH--------HSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHH--------HCCCCCCCCCCC
Confidence            56778888899999999999999999999886        668889999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.3e-13  Score=68.11  Aligned_cols=44  Identities=34%  Similarity=0.600  Sum_probs=38.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC--------HTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHH--------HSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHh--------cCCCCCCCCCCC
Confidence            66778888899999999999999999999886        668889999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.30  E-value=6.4e-13  Score=68.74  Aligned_cols=44  Identities=25%  Similarity=0.452  Sum_probs=37.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV--------HVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGG--------GSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHH--------cCCCCCcCCCCC
Confidence            56778888899999999999999999999875        678889999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.7e-13  Score=68.66  Aligned_cols=44  Identities=34%  Similarity=0.572  Sum_probs=38.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHH--------HHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            66778888999999999999999999999886        668889999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.7e-13  Score=68.22  Aligned_cols=44  Identities=39%  Similarity=0.699  Sum_probs=38.5

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTT--------TTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHh--------cCCCCCCCCCCC
Confidence            66778889999999999999999999999875        778899999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.7e-13  Score=68.23  Aligned_cols=44  Identities=34%  Similarity=0.684  Sum_probs=38.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV--------HTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTT--------SCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHh--------hCCCCCCCCCCC
Confidence            56678888899999999999999999999875        778899999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=8.3e-13  Score=68.31  Aligned_cols=44  Identities=34%  Similarity=0.611  Sum_probs=37.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGG--------GTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56678888889999999999998889998875        678888988887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.5e-13  Score=68.48  Aligned_cols=44  Identities=34%  Similarity=0.690  Sum_probs=38.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHH--------HHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHh--------cCCCCCCCCCCC
Confidence            66778888999999999999999999999886        668889999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.9e-13  Score=68.40  Aligned_cols=45  Identities=29%  Similarity=0.544  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .|+..|.++++|.|+.|++.|.....|..|+++        |++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR--------HFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHH--------HHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHH--------HcCCCCCCCCCC
Confidence            366778888999999999999999999999886        668889999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=67.66  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=37.5

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVL--------HMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHH--------HSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56678888889999999999999999999886        668888999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.29  E-value=9.7e-13  Score=68.04  Aligned_cols=44  Identities=34%  Similarity=0.634  Sum_probs=37.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV--------HSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGG--------GTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56778888889999999999988889888875        678888888887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1e-12  Score=67.95  Aligned_cols=45  Identities=36%  Similarity=0.737  Sum_probs=37.4

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .|++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGG--------GSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            366778888888898899888888888888875        678888888877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=67.84  Aligned_cols=44  Identities=41%  Similarity=0.738  Sum_probs=37.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHH--------HSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHH--------cCCCCCCCCCCC
Confidence            56678888899999999999999999999886        668889999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=9.5e-13  Score=68.10  Aligned_cols=44  Identities=25%  Similarity=0.525  Sum_probs=36.2

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV--------HMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGG--------GGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHh--------cCCCCCCCCCCC
Confidence            55677888888888888888888888888875        668888888877

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=6.8e-13  Score=68.65  Aligned_cols=44  Identities=36%  Similarity=0.679  Sum_probs=37.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV--------HTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHH--------HHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHh--------cCCCCCCCCCCC
Confidence            56778888899999999999999999999886        668889999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.5e-12  Score=67.57  Aligned_cols=44  Identities=34%  Similarity=0.586  Sum_probs=38.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHH-HcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKR-THIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|++ +        |++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~--------H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYY--------HTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTT--------TTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhh--------cCCCCCCCCCCC
Confidence            5677888899999999999999999999988 5        778899999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=9.8e-13  Score=68.05  Aligned_cols=44  Identities=39%  Similarity=0.768  Sum_probs=37.7

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL--------HTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHH--------HHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            56678888899999999999999999999886        668889999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-12  Score=67.10  Aligned_cols=44  Identities=30%  Similarity=0.544  Sum_probs=36.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|++|++.|.....|..|+++        |++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM--------HTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGG--------GCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            45678888889999999999999999999876        678888988887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=67.00  Aligned_cols=44  Identities=34%  Similarity=0.671  Sum_probs=38.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTT--------TTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            66778888999999999999999999999875        778899999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=7.7e-13  Score=68.45  Aligned_cols=44  Identities=30%  Similarity=0.649  Sum_probs=36.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGG--------GSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            56678888888888888888888888888875        678888888887

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=6.4e-12  Score=71.52  Aligned_cols=65  Identities=34%  Similarity=0.732  Sum_probs=55.7

Q ss_pred             hhhHhh-hcCCCCCcccc--cchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcC
Q psy3356          54 PQIHMR-THTGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        54 l~~H~~-~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      +..|+. ++.++++|.|+  .|++.|.....|..|++.|     .++++|.|+.|++.|.....|..|++.|+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHH-----HCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhh-----CCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            444433 46778999997  5999999999999999998     78899999999999999999999998873

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.7e-12  Score=67.10  Aligned_cols=44  Identities=25%  Similarity=0.549  Sum_probs=36.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV--------HTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHH--------HHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHH--------HcCCCCCCCCCC
Confidence            45677888889999999999998899999886        668888988887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.1e-12  Score=66.13  Aligned_cols=44  Identities=30%  Similarity=0.613  Sum_probs=37.7

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHH--------HCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            56678888999999999999999999999886        678889999875

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=7.5e-12  Score=69.85  Aligned_cols=55  Identities=18%  Similarity=0.362  Sum_probs=48.4

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecc-ccccccCChHHHHHHHHHcC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE-ICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .+.++|.|..|++.|. ...|..|++. .+++||.|+ .|++.|.....|..|+++|.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhc
Confidence            5678899999999999 9999999988 888999999 99999999999999998753

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.21  E-value=9.9e-12  Score=64.80  Aligned_cols=42  Identities=31%  Similarity=0.634  Sum_probs=32.6

Q ss_pred             cCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcc
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG  171 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~  171 (180)
                      +.++++|.|.+|++.|.....|..|+++        |++++||.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLS--------HSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG--------SCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHh--------cCCCCCccCCCCCC
Confidence            4566778888888888888888888775        66778888888875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.20  E-value=1.9e-11  Score=69.31  Aligned_cols=55  Identities=35%  Similarity=0.779  Sum_probs=42.4

Q ss_pred             CCCcceeccc--cCcccCChhhHHHHHhhcCCCCceeccc--cccccCChHHHHHHHHH
Q psy3356          95 VKDKPYHCTE--CEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRT  149 (180)
Q Consensus        95 ~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~  149 (180)
                      ...+++.|..  |++.|.....|..|+..|.++++|.|++  |++.|.....|..|+++
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            4556777877  8888888888888888888888888854  88888888888888764

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=1.2e-11  Score=63.50  Aligned_cols=42  Identities=33%  Similarity=0.694  Sum_probs=34.6

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACE  170 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~  170 (180)
                      .|.++++|.|++|++.|.....|..|+++        |+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--------H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRS--------HDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHH--------HSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHH--------ccCCCCCCCcCCC
Confidence            56778888888888888888888888886        6678888888886

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8e-12  Score=64.50  Aligned_cols=43  Identities=33%  Similarity=0.674  Sum_probs=35.8

Q ss_pred             HhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         119 MRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       119 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      +..|.++++|.|+.|++.|.....|..|+++        |.+++||.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI--------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTT--------TSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHH--------hCCCCCCCCCCC
Confidence            3467788889999999999999999999875        778888999887

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.19  E-value=8.1e-12  Score=64.48  Aligned_cols=43  Identities=40%  Similarity=0.711  Sum_probs=36.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHH--------HTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56778888899999999999999999999886        66888898874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.19  E-value=8.2e-12  Score=63.13  Aligned_cols=42  Identities=36%  Similarity=0.650  Sum_probs=33.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRT--------HAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGG--------GCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHh--------cCCCCCCCCC
Confidence            45667788888888888888888888888875        6678888874

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=8.2e-12  Score=64.48  Aligned_cols=43  Identities=40%  Similarity=0.724  Sum_probs=35.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|..|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS--------HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHH--------HSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHh--------cCCCCCCCCCC
Confidence            56678888889998899999888889999886        66888888864

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=63.82  Aligned_cols=45  Identities=31%  Similarity=0.588  Sum_probs=30.1

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      .|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH-----SGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHC-----CSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhc-----CCCCCCCCCCC
Confidence            3566666666777777777777777777776666     56666666655

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=63.82  Aligned_cols=43  Identities=37%  Similarity=0.664  Sum_probs=37.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHT--------SCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56778888999999999999999999999886        77889999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1e-11  Score=64.14  Aligned_cols=43  Identities=40%  Similarity=0.683  Sum_probs=36.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|..|++.|.....|..|+++        |++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTT--------TSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56778888899999999999999999999875        77888998874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=9.9e-12  Score=64.11  Aligned_cols=43  Identities=35%  Similarity=0.703  Sum_probs=36.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT--------HSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHH--------HCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHH--------cCCCCCCCCCC
Confidence            56778888899999999999999999999886        66888898874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=63.99  Aligned_cols=43  Identities=37%  Similarity=0.765  Sum_probs=36.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|..|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHH--------HCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56778888889999999999999999999886        66888888864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1e-11  Score=64.05  Aligned_cols=43  Identities=35%  Similarity=0.667  Sum_probs=36.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTT--------TTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHh--------hCCCCCCCCCC
Confidence            56778888899999999999999999999875        77888998874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=63.99  Aligned_cols=43  Identities=33%  Similarity=0.624  Sum_probs=36.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI--------HTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTT--------TSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56678888889999999999999999999875        77888898874

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.3e-11  Score=63.66  Aligned_cols=45  Identities=31%  Similarity=0.596  Sum_probs=27.8

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH-----TGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHH-----SCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhc-----CCCCCCCCCCC
Confidence            3555666666666666666666666666666665     55566666554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=64.04  Aligned_cols=44  Identities=39%  Similarity=0.706  Sum_probs=26.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHH-----SCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHh-----CCCCCCCCCCC
Confidence            555555666666666666666666666666555     45555555554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.16  E-value=1.2e-11  Score=63.78  Aligned_cols=45  Identities=40%  Similarity=0.722  Sum_probs=28.0

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHH-----SSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            3555666666666666666666666666666665     55566666554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.8e-11  Score=63.13  Aligned_cols=42  Identities=36%  Similarity=0.621  Sum_probs=36.2

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |++.|.++++|.|++|++.|.....|..|+++        |++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV--------HTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHH--------CSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH--------hCCCCCCCCC
Confidence            56678888999999999999999999999886        6788899886

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.9e-11  Score=61.69  Aligned_cols=42  Identities=24%  Similarity=0.482  Sum_probs=34.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKM--------HTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHH--------TSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHH--------hCCCCCCCCC
Confidence            45677888889999999999999999999886        6788888874

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.9e-11  Score=62.41  Aligned_cols=42  Identities=38%  Similarity=0.618  Sum_probs=36.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT--------HTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHH--------TTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHH--------hCCCCCCCCC
Confidence            56778888999999999999999999999886        6788888885

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=63.96  Aligned_cols=44  Identities=39%  Similarity=0.806  Sum_probs=22.4

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH-----SGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGG-----SSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHh-----cCCCCCCCCCC
Confidence            444555555555555555555555555555544     44445555443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=63.99  Aligned_cols=43  Identities=35%  Similarity=0.682  Sum_probs=36.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTT--------TSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHh--------cCCCCCCCCCC
Confidence            56778888999999999999999999999875        77889998874

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.3e-11  Score=63.71  Aligned_cols=44  Identities=39%  Similarity=0.815  Sum_probs=25.3

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTT-----SSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHh-----CCCCCCCCCCC
Confidence            455555555666666666666665666665555     45555555544

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=63.79  Aligned_cols=43  Identities=42%  Similarity=0.734  Sum_probs=35.5

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGG--------TSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHh--------cCCCCCcCCCC
Confidence            56678888888888888888888888888875        77888888864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-11  Score=62.87  Aligned_cols=39  Identities=38%  Similarity=0.617  Sum_probs=18.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344444444444444444444444444444444444443

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=9.2e-12  Score=64.28  Aligned_cols=45  Identities=31%  Similarity=0.606  Sum_probs=28.5

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH-----FREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHH-----HSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHH-----cCCCCCCCCCC
Confidence            3556666666666666666666666666666665     55566666554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2e-11  Score=62.30  Aligned_cols=42  Identities=26%  Similarity=0.545  Sum_probs=36.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |+..|.+++||.|+.|++.|.....|..|+++        |++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT--------HARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHH--------CCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHh--------cCCCCCCCCC
Confidence            56778888999999999999999999999886        6788888884

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=63.52  Aligned_cols=43  Identities=42%  Similarity=0.691  Sum_probs=35.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI--------HRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGG--------GCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhH--------hCCCCCCCCCC
Confidence            56678888888888888888888888888875        66888888863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=64.00  Aligned_cols=43  Identities=37%  Similarity=0.719  Sum_probs=36.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|..|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI--------HTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHH--------HHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHh--------cCCCCCCCCCC
Confidence            56778888889999999999999999999886        66888888874

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=63.70  Aligned_cols=44  Identities=39%  Similarity=0.711  Sum_probs=25.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH-----AGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHH-----TTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            455555555566666666665555555555555     45555555544

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=63.77  Aligned_cols=44  Identities=39%  Similarity=0.694  Sum_probs=36.3

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      .|+..|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI--------HTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGG--------GSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            356778888889999999999999999999876        67888888874

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.5e-11  Score=63.44  Aligned_cols=44  Identities=43%  Similarity=0.809  Sum_probs=26.3

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH-----TAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHT-----TCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            555566666666666666666666666666655     55555655554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.5e-11  Score=63.50  Aligned_cols=43  Identities=37%  Similarity=0.720  Sum_probs=36.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTT--------TSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHH--------cCCCCCCCCCC
Confidence            56778888899999999999999999999875        77888998864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.6e-11  Score=63.29  Aligned_cols=44  Identities=36%  Similarity=0.693  Sum_probs=24.7

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH-----TKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHT-----SCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            455555555555555555555555555555555     45555555543

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=64.07  Aligned_cols=43  Identities=37%  Similarity=0.705  Sum_probs=35.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGG--------GCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHH--------cCCCCCCCCCC
Confidence            56678888888888888888888888888875        67888888864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=63.67  Aligned_cols=44  Identities=39%  Similarity=0.721  Sum_probs=23.7

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH-----TGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGG-----SCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            445555555555555555555555555555554     44555555544

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.5e-11  Score=63.37  Aligned_cols=43  Identities=37%  Similarity=0.726  Sum_probs=36.4

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTT--------TSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHH--------cCCCCCCCCCC
Confidence            56778888899999999999999999999875        77888998864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.5e-11  Score=63.45  Aligned_cols=43  Identities=26%  Similarity=0.557  Sum_probs=35.9

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHH--------HTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHH--------cCCCCCCCCCC
Confidence            56678888889999999999999999999886        66888888874

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=63.56  Aligned_cols=44  Identities=36%  Similarity=0.724  Sum_probs=25.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHH-----SSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHH-----CCCCCCCCCCC
Confidence            455555555566666666665555555555555     45555555544

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=63.60  Aligned_cols=43  Identities=33%  Similarity=0.629  Sum_probs=36.2

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV--------HTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHH--------HSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            66778888889999999999999999999886        66888888863

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=63.79  Aligned_cols=45  Identities=33%  Similarity=0.615  Sum_probs=27.5

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHH-----HCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            3555666666666666666666666666666665     55556666554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=63.87  Aligned_cols=44  Identities=34%  Similarity=0.706  Sum_probs=21.3

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGT-----SCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhc-----CCCCCCCCCCC
Confidence            444444445555555555555555555554444     44444444443

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=63.53  Aligned_cols=43  Identities=35%  Similarity=0.669  Sum_probs=36.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTT--------TCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56778888899999999999999999999875        77888998864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=63.90  Aligned_cols=45  Identities=38%  Similarity=0.723  Sum_probs=27.4

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHH-----HCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhc-----CCCCCCCCCCC
Confidence            3555666666666666666666666666666665     55556666554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=63.77  Aligned_cols=43  Identities=37%  Similarity=0.794  Sum_probs=34.9

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGG--------GTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHh--------cCCCCCCCCCC
Confidence            56678888888888888888888888888875        66788888864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=1.2e-11  Score=63.83  Aligned_cols=44  Identities=32%  Similarity=0.562  Sum_probs=23.1

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH-----VGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGG-----SSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHc-----CCCCCcCCCCC
Confidence            445555555555555555555555555555554     44455555443

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.5e-11  Score=63.41  Aligned_cols=44  Identities=34%  Similarity=0.703  Sum_probs=22.3

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGG-----CCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhc-----CCCCCCCCCCC
Confidence            444555555555555555555555555555444     44444554443

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.14  E-value=1.2e-11  Score=63.75  Aligned_cols=44  Identities=32%  Similarity=0.687  Sum_probs=22.4

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGG-----GCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhc-----CCCCCCCCCCC
Confidence            444555555555555555555555555555544     44445555443

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=63.55  Aligned_cols=43  Identities=35%  Similarity=0.692  Sum_probs=35.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|++|++.|.....|..|+++        |++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV--------HSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTT--------TTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHh--------cCCCCCCCCCC
Confidence            45678888889999999999998889888875        77888888874

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=63.87  Aligned_cols=44  Identities=30%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTT-----SCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHh-----CCCCCCCCCCC
Confidence            444455555555555555555555555555444     44444444443

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.7e-11  Score=63.23  Aligned_cols=44  Identities=32%  Similarity=0.717  Sum_probs=24.8

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH-----TGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHH-----TCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHc-----CCCCCCCCCCC
Confidence            455555555555555555555555555555555     45555555544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.5e-11  Score=63.46  Aligned_cols=44  Identities=36%  Similarity=0.662  Sum_probs=24.8

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH-----TGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTT-----TTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            455555555555655555555555555555555     45555555544

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=63.27  Aligned_cols=44  Identities=41%  Similarity=0.628  Sum_probs=25.2

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH-----VDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHC-----CSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHh-----CCCCCCCCCCC
Confidence            455555555566666666666655566665555     45555555544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.14  E-value=1.2e-11  Score=63.80  Aligned_cols=39  Identities=44%  Similarity=0.719  Sum_probs=19.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|+.|++.|.....|..|+..|.+++||.|+.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            8 TGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344445555555555555555555555555555555443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=5.8e-11  Score=63.43  Aligned_cols=45  Identities=36%  Similarity=0.668  Sum_probs=35.5

Q ss_pred             CCCcceeccccCcccCChhhHHHHHh-hcCCCCceeccccccccCC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMR-THTGERPYECEICGKRFSQ  139 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  139 (180)
                      .++++|.|+.|++.|.....|..|++ .|.++++|.|++|++.|.+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            56777888888888888888888876 7878888888888888764

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=62.67  Aligned_cols=42  Identities=36%  Similarity=0.547  Sum_probs=36.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT--------HTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTT--------TCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhh--------cCCCCCCCCC
Confidence            66778888999999999999999999999875        7788898885

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.5e-11  Score=63.47  Aligned_cols=44  Identities=39%  Similarity=0.770  Sum_probs=25.1

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTT-----TTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhc-----CCCCCCCCCCC
Confidence            455555555666666666666655566665555     45555555544

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.5e-11  Score=62.74  Aligned_cols=42  Identities=38%  Similarity=0.611  Sum_probs=35.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT--------HSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTT--------SSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHH--------cCCCCCCCCC
Confidence            56778888889999999999999999998875        6788888884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.13  E-value=2.8e-11  Score=61.09  Aligned_cols=41  Identities=32%  Similarity=0.652  Sum_probs=34.0

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~--------H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS--------CSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHH--------TTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhh--------cCCCCCCCC
Confidence            45677888889998899999888889999886        678888887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-11  Score=63.52  Aligned_cols=44  Identities=36%  Similarity=0.735  Sum_probs=21.4

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTT-----CCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhc-----CCCCCCCCCCC
Confidence            444444455555555555555555555554444     44444444443

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.13  E-value=1.9e-11  Score=63.09  Aligned_cols=44  Identities=39%  Similarity=0.758  Sum_probs=24.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHH-----SCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            445555555555555555555555555555555     45555555544

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.9e-11  Score=63.03  Aligned_cols=42  Identities=36%  Similarity=0.688  Sum_probs=35.7

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS--------HTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHH--------HTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHH--------cCCCCCCCCC
Confidence            56778888889999999999999999999886        6688888886

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=63.43  Aligned_cols=39  Identities=36%  Similarity=0.659  Sum_probs=18.5

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|+.|++.|.....|..|++.|.+++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            8 TGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344444444444444444444444444444444444443

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.6e-11  Score=63.31  Aligned_cols=44  Identities=34%  Similarity=0.569  Sum_probs=23.2

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH-----MGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTT-----CCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHh-----CCCCCCCCCCC
Confidence            445555555555555555555555555555544     44455555443

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.1e-11  Score=64.04  Aligned_cols=42  Identities=33%  Similarity=0.646  Sum_probs=34.2

Q ss_pred             hhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       120 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      +.|.++++|.|+.|++.|.....|..|+++        |.+++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWIT--------HTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTH--------HHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            457778888888888888888888888876        667888888877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=63.13  Aligned_cols=39  Identities=36%  Similarity=0.704  Sum_probs=19.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|..|++.|.....|..|+..|.+++||.|+.|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            8 SGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344444555555555555555555555555555555443

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.1e-11  Score=62.86  Aligned_cols=44  Identities=39%  Similarity=0.736  Sum_probs=22.8

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTT-----TTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHh-----CCCCCCCCCCC
Confidence            444555555555555555555555555555544     44455555443

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2e-11  Score=62.94  Aligned_cols=44  Identities=39%  Similarity=0.761  Sum_probs=24.2

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHH-----SSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHc-----CCCCCCCCCCC
Confidence            445555555555555555555555555555555     45555555544

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=63.23  Aligned_cols=39  Identities=36%  Similarity=0.670  Sum_probs=20.5

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|+.|++.|.....|..|++.|.+++||.|+.|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            8 TGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            444555555555555555555555555555555555543

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.12  E-value=1.7e-11  Score=63.21  Aligned_cols=39  Identities=38%  Similarity=0.813  Sum_probs=19.4

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|+.|++.|.....|..|+..|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            8 TGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344445555555555555555555555555555555443

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.2e-11  Score=62.81  Aligned_cols=39  Identities=31%  Similarity=0.674  Sum_probs=18.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|..|++.|.....|..|++.|.+++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            8 SVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344444444444444444444444444444444444443

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.7e-11  Score=62.47  Aligned_cols=44  Identities=36%  Similarity=0.643  Sum_probs=21.9

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH-----SGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTT-----CCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHh-----CCCCCCCCCCC
Confidence            344455555555555555555555555555444     44444544443

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.3e-11  Score=62.09  Aligned_cols=44  Identities=34%  Similarity=0.662  Sum_probs=22.4

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH-----SGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHS-----CCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHh-----CCCCCCCCCCC
Confidence            344455555555555555555555555555554     44445555443

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.5e-11  Score=62.58  Aligned_cols=43  Identities=21%  Similarity=0.369  Sum_probs=36.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCC-CCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPK-DRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~-~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++ ++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERI--------HTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTT--------CCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHH--------cCCCCCCCCCCC
Confidence            56678888899999999999999999999875        778 88898863

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.8e-11  Score=62.43  Aligned_cols=44  Identities=32%  Similarity=0.668  Sum_probs=27.4

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH-----TGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHH-----HSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHc-----CCCCCCCCCCC
Confidence            455566666666666666666666666666665     55566666554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=62.85  Aligned_cols=44  Identities=32%  Similarity=0.717  Sum_probs=21.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH-----TGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTS-----CSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhh-----CCCCCCCCCCC
Confidence            444444455555555555555555555554444     44444444443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=6.9e-11  Score=65.85  Aligned_cols=59  Identities=22%  Similarity=0.483  Sum_probs=49.7

Q ss_pred             CCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc-ccCcccCChhhHHHHHhhcCCCCc
Q psy3356          62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT-ECEATFSWKQNLEVHMRTHTGERP  127 (180)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~-~C~~~~~~~~~l~~H~~~h~~~~~  127 (180)
                      -+.++|.|.+|++.|. ...|..|+++      .++++|.|+ .|++.|.....|..|++.|....+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~------~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ------CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH------CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH------cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4567899999999999 8999999876      377899999 999999999999999988865543

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.4e-11  Score=63.60  Aligned_cols=44  Identities=41%  Similarity=0.750  Sum_probs=23.8

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH-----TGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHH-----HSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhc-----CCCCCCCCCCC
Confidence            445555555555555555555555555555555     44555555544

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.4e-11  Score=62.05  Aligned_cols=42  Identities=19%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKT--------HAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGG--------GCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHH--------cCCCCCcCCC
Confidence            56678888888888888888888888888875        6788888884

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.4e-11  Score=62.06  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLH-----MGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHH-----SCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHh-----CCCCCCCCCCC
Confidence            444555555555555555555555555555554     44455555443

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.3e-11  Score=62.72  Aligned_cols=39  Identities=36%  Similarity=0.680  Sum_probs=21.0

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|+.|++.|.....|..|++.|.+++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            444555555555555555555555555555555555544

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.9e-11  Score=62.30  Aligned_cols=43  Identities=40%  Similarity=0.723  Sum_probs=35.9

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI--------HTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTT--------SCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56778888889999999999999999999875        77888888863

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.10  E-value=3e-11  Score=62.27  Aligned_cols=39  Identities=41%  Similarity=0.655  Sum_probs=19.9

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            8 AGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344455555555555555555555555555555555444

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.6e-11  Score=62.50  Aligned_cols=43  Identities=37%  Similarity=0.767  Sum_probs=23.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE  104 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~  104 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH-----TGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTT-----TTSCCCCTTC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHc-----CCCCCCCCCC
Confidence            445555555555555555555555555555554     4445555543

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.4e-11  Score=61.38  Aligned_cols=41  Identities=37%  Similarity=0.732  Sum_probs=33.5

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI--------HTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTT--------TSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHh--------cCCCCCCCC
Confidence            45677888888888888888888888888875        678888877

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.3e-11  Score=62.12  Aligned_cols=42  Identities=36%  Similarity=0.768  Sum_probs=33.5

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |++.|.++++|.|++|++.|.....|..|+++        |.+++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV--------HSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGG--------SCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH--------hCCCCCCCCC
Confidence            45567788888888888888888888888875        6778888886

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.2e-11  Score=63.76  Aligned_cols=39  Identities=33%  Similarity=0.695  Sum_probs=20.3

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|+.|++.|.....|..|+..|.+++||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            8 TGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444455555555555555555555555555555555544

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4e-11  Score=61.19  Aligned_cols=42  Identities=21%  Similarity=0.322  Sum_probs=34.2

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |+..|.++++|.|++|++.|.....|..|+++        |++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQAL--------HAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHH--------HTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHH--------HCCCCCCCCC
Confidence            45677788888888888888888888888886        6678888884

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.8e-11  Score=61.77  Aligned_cols=41  Identities=39%  Similarity=0.710  Sum_probs=33.3

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      |++.|.++++|.|+.|++.|.....|..|+++        |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV--------HTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGG--------TSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHH--------hCCCCCCCC
Confidence            56677888888888888888888888888875        678888877

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.7e-11  Score=61.93  Aligned_cols=44  Identities=30%  Similarity=0.604  Sum_probs=22.8

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH-----TGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHH-----HCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHH-----cCCCCCCCCCC
Confidence            344455555555555555555555555555554     44455555443

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2e-11  Score=61.64  Aligned_cols=41  Identities=34%  Similarity=0.645  Sum_probs=32.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI--------HTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHH--------HHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHH--------cCCCCCCCC
Confidence            45667788888888888888888888888876        667788876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.9e-11  Score=62.09  Aligned_cols=44  Identities=36%  Similarity=0.633  Sum_probs=24.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHH-hccCCCcCCCcceecccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKR-VHISYLHVKDKPYHCTEC  105 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~~~~~~C~~C  105 (180)
                      |+++|.++++|.|++|++.|.....|..|++ .|     .++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H-----~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH-----TGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTT-----TTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhc-----CCCCCCCCCCC
Confidence            4555555555555555555555555555555 44     45555555544

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.08  E-value=2.1e-11  Score=65.18  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=41.4

Q ss_pred             cccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCc
Q psy3356         107 ATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPF  164 (180)
Q Consensus       107 ~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~  164 (180)
                      +.|.....|..|+..|.++++|.|+.|++.|.....|..|+++        |++++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLEL--------RHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHH--------HTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHH--------hccCCCC
Confidence            4566677778888888888999999999999999999999886        5677776

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.8e-11  Score=61.71  Aligned_cols=43  Identities=33%  Similarity=0.628  Sum_probs=36.1

Q ss_pred             HhhcCCCCceecc--ccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCC
Q psy3356         119 MRTHTGERPYECE--ICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC  169 (180)
Q Consensus       119 ~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C  169 (180)
                      .+.|.++++|.|.  .|++.|.....|..|+++        |++++||.|+.|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS--------HSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTT--------SCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHH--------hCCCCCCCCCCC
Confidence            3467788889997  899999999999999875        778889999887

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.2e-11  Score=62.78  Aligned_cols=43  Identities=30%  Similarity=0.644  Sum_probs=35.7

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL--------HSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHH--------HHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHH--------hCCCCCCCCCC
Confidence            56678888889999999999999999999886        66788888863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.3e-11  Score=62.75  Aligned_cols=42  Identities=31%  Similarity=0.596  Sum_probs=35.6

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS--------HERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHH--------HHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHH--------hCCCCCCCCC
Confidence            66778888899999999999999999999886        6678888886

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=2.4e-10  Score=64.71  Aligned_cols=58  Identities=36%  Similarity=0.735  Sum_probs=50.4

Q ss_pred             hcCCCCCccccc--chhhccChHHHHHHHHhccCCCcCCCcceeccc--cCcccCChhhHHHHHhhc
Q psy3356          60 THTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        60 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h  122 (180)
                      .....++|.|..  |++.|.....|..|++.|     .++++|.|.+  |++.|.....|..|++.|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH-----TGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHH-----SSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhc-----CCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            345667899988  999999999999999998     7889999965  999999999999998765

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.6e-11  Score=60.67  Aligned_cols=41  Identities=34%  Similarity=0.698  Sum_probs=32.6

Q ss_pred             hhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       120 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      ..|.++++|.|..|++.|.....|..|+++        |++++||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRI--------HTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTT--------TSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHH--------hCCCCCCCCCC
Confidence            457778888888888888888888888875        67888888864

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=8.4e-11  Score=60.56  Aligned_cols=43  Identities=37%  Similarity=0.741  Sum_probs=23.3

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE  104 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~  104 (180)
                      |+++|.++++|.|.+|++.|.....|..|++.|     .++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH-----TGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHH-----CCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHh-----CCCCCCCCCC
Confidence            445555555555555555555555555555555     4455555543

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=58.83  Aligned_cols=40  Identities=20%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      .|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQ--------THSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHH--------HTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHh--------hCCCCCccCCC
Confidence            56777888888888888888888888886        66788888864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.04  E-value=9.7e-11  Score=62.53  Aligned_cols=51  Identities=18%  Similarity=0.163  Sum_probs=41.9

Q ss_pred             ecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcce
Q psy3356          45 SFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPY  100 (180)
Q Consensus        45 ~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~  100 (180)
                      ++.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|     .++++|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELR-----HFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHH-----TTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHh-----ccCCCC
Confidence            356668888888988888888899999999998888888888887     666654

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=59.82  Aligned_cols=41  Identities=34%  Similarity=0.550  Sum_probs=33.6

Q ss_pred             hhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       120 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      +.|.++++|.|+.|++.|.....|..|+++        |++++||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRI--------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHH--------HSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHH--------hCCCCCCCCCC
Confidence            467778888888888888888888888886        66788888864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.8e-11  Score=61.25  Aligned_cols=42  Identities=21%  Similarity=0.445  Sum_probs=34.5

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |+..|.++++|.|+.|++.|.....|..|+++        |++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI--------HTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHH--------HCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHH--------hCCCCCCCCC
Confidence            56678888888888888888888888888886        6678888873

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=2.4e-10  Score=59.38  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=34.1

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGK  135 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  135 (180)
                      .++++|.|..|++.|.....|..|++.|.++++|.|++|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            56778888888888888888888888888888888888874

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.02  E-value=2.1e-11  Score=67.10  Aligned_cols=52  Identities=19%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             hhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChh
Q psy3356          54 PQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQ  113 (180)
Q Consensus        54 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~  113 (180)
                      |..|+++|.++++|.|++|++.|.....|.   +.|     .++++|.|+.|++.|....
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H-----~~~k~~~C~~C~k~f~~~~   53 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFD-----PMTGTFRCTFCHTEVEEDE   53 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEE-----TTTTEEBCSSSCCBCEECT
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhc-----CCCCCEECCCCCCccccCc
Confidence            345666676677777777777776655554   444     5666666666666665443

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.02  E-value=1.1e-10  Score=60.13  Aligned_cols=42  Identities=45%  Similarity=0.823  Sum_probs=25.3

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHH-----TTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            555566666666666666666666666666655     555555554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=59.59  Aligned_cols=41  Identities=39%  Similarity=0.597  Sum_probs=33.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      |++.|.++++|.|++|++.|.....|..|+++        |++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT--------HAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGG--------GSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhH--------hcCCCCCCC
Confidence            56677888888888888888888888888875        667888776

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.1e-10  Score=60.07  Aligned_cols=42  Identities=38%  Similarity=0.758  Sum_probs=24.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTT-----TTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhh-----CCCCCCCCC
Confidence            455555566666666666666666666665555     455555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=59.81  Aligned_cols=42  Identities=36%  Similarity=0.739  Sum_probs=25.3

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH-----SGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHH-----CCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHc-----CCCCCCCCC
Confidence            555566666666666666666666666666655     555555554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=59.61  Aligned_cols=42  Identities=43%  Similarity=0.734  Sum_probs=25.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTS-----CSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            455555666666666666666666666666555     455555554

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.6e-10  Score=59.44  Aligned_cols=42  Identities=43%  Similarity=0.751  Sum_probs=25.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|.+|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH-----TGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHH-----SSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhc-----CCCCCCCCC
Confidence            455565666666666666666666666666655     555555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=59.69  Aligned_cols=43  Identities=40%  Similarity=0.783  Sum_probs=26.1

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH-----TGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGG-----SSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            3555666666666666666666666666666655     555555554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.5e-10  Score=59.60  Aligned_cols=42  Identities=40%  Similarity=0.789  Sum_probs=24.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|.+|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H-----~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHH-----CCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            455555556666666666666666666666555     455555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.3e-10  Score=59.78  Aligned_cols=43  Identities=37%  Similarity=0.696  Sum_probs=26.6

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH-----TQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHH-----SSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            3555666666666666666666666666666665     555566554

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.00  E-value=1.5e-10  Score=58.34  Aligned_cols=36  Identities=39%  Similarity=0.745  Sum_probs=19.9

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceec
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC  130 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  130 (180)
                      .++++|.|+.|++.|.....|..|+..|.++++|.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            445555555555555555555555555555555554

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=58.69  Aligned_cols=42  Identities=36%  Similarity=0.639  Sum_probs=26.1

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH-----TGESGPSS   43 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHT-----TTSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHh-----CCCCCCCC
Confidence            3555666666666666666666666666666665     55555555

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.7e-10  Score=57.08  Aligned_cols=38  Identities=39%  Similarity=0.743  Sum_probs=29.3

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      .|.++++|.|+.|++.|.....|..|+++        |++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERI--------HTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGG--------CCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHH--------hCCCCCcCC
Confidence            46677788888888888888888888775        667777776

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.8e-10  Score=59.29  Aligned_cols=42  Identities=33%  Similarity=0.681  Sum_probs=26.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH-----TGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHH-----TSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHc-----CCCCCCCCC
Confidence            555666666666666666666666666666665     555666554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=59.92  Aligned_cols=42  Identities=40%  Similarity=0.793  Sum_probs=23.1

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGG-----CCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHc-----CCCCCCCCC
Confidence            455555555555555555555555555555555     445555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=59.88  Aligned_cols=42  Identities=38%  Similarity=0.773  Sum_probs=25.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTT-----SCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhc-----CCCCCCCCC
Confidence            555566666666666666666666666666555     555555554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=59.51  Aligned_cols=42  Identities=45%  Similarity=0.810  Sum_probs=25.1

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH-----TGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTT-----SSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHc-----CCCCCCCCC
Confidence            555566666666666666666666666666555     555555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.4e-10  Score=57.54  Aligned_cols=32  Identities=28%  Similarity=0.783  Sum_probs=16.9

Q ss_pred             hhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          58 MRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        58 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +++|.++++|.|++|++.|.....|..|+++|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMH   33 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            34455555555555555555555555555554

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.3e-10  Score=59.77  Aligned_cols=42  Identities=48%  Similarity=0.795  Sum_probs=21.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTT-----SCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            444555555555555555555555555555544     444444443

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=4.7e-10  Score=57.39  Aligned_cols=40  Identities=30%  Similarity=0.611  Sum_probs=26.3

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICG  134 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~  134 (180)
                      .++++|.|..|++.|.....|..|++.|.++++|.|+.|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4566666666666666666666666666666666666664

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=59.70  Aligned_cols=37  Identities=43%  Similarity=0.785  Sum_probs=17.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      .++++|.|+.|++.|.....|..|++.|.+++||.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            8 TGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            3444444444444444444444444444444444443

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=59.50  Aligned_cols=42  Identities=38%  Similarity=0.767  Sum_probs=25.0

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTT-----CCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            555566666666666666666666666666555     455555554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2e-10  Score=58.51  Aligned_cols=41  Identities=29%  Similarity=0.618  Sum_probs=23.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH-----ARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHC-----CCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhc-----CCCCCCCC
Confidence            455555555666666666666655666665555     44555544

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.6e-10  Score=59.43  Aligned_cols=42  Identities=45%  Similarity=0.904  Sum_probs=21.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH-----TGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGG-----TTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhc-----CCCCCCCCC
Confidence            444555555555555555555555555555544     444444443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.7e-10  Score=59.36  Aligned_cols=42  Identities=33%  Similarity=0.680  Sum_probs=24.7

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH-----TGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHH-----TCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHc-----CCCCCCCCC
Confidence            555555566666666666666666666666555     455555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.7e-10  Score=59.31  Aligned_cols=42  Identities=36%  Similarity=0.725  Sum_probs=22.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH-----TGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTT-----SCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            445555555555555555555555555555554     444555543

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.7e-10  Score=59.35  Aligned_cols=42  Identities=38%  Similarity=0.807  Sum_probs=25.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|.+|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH-----TGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHH-----HSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhc-----CCCCCCCCC
Confidence            555566666666666666666666666666655     455555554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.8e-10  Score=58.54  Aligned_cols=42  Identities=36%  Similarity=0.682  Sum_probs=25.4

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH-----TGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHC-----SSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            455566666666666666666666666666665     555555554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.6e-10  Score=59.39  Aligned_cols=42  Identities=43%  Similarity=0.835  Sum_probs=22.6

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|.+|++.|.....|..|+++|     .++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTT-----SSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHc-----CCCCCCCCC
Confidence            445555555555555555555555555555554     444555543

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.2e-10  Score=58.94  Aligned_cols=42  Identities=48%  Similarity=0.793  Sum_probs=21.7

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH-----RGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGG-----CSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHh-----CCCCCCCCC
Confidence            444555555555555555555555555555554     444444443

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.9e-10  Score=58.54  Aligned_cols=41  Identities=34%  Similarity=0.635  Sum_probs=23.5

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH-----SGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTS-----SSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHc-----CCCCCCCC
Confidence            455555555666666666666666666665555     44555554

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.9e-10  Score=58.51  Aligned_cols=41  Identities=34%  Similarity=0.600  Sum_probs=23.8

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH-----TGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTT-----CCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhc-----CCCCCCCC
Confidence            455555556666666666666666666665555     45555554

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.5e-10  Score=58.70  Aligned_cols=39  Identities=38%  Similarity=0.772  Sum_probs=24.8

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|..|++.|.....|..|++.|.+++||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            8 TGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            455666666666666666666666666666666666655

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.3e-10  Score=58.79  Aligned_cols=42  Identities=40%  Similarity=0.810  Sum_probs=24.1

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|     .++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH-----TGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTS-----CCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            455555555666666666666666666665555     455555554

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.3e-10  Score=58.87  Aligned_cols=37  Identities=35%  Similarity=0.689  Sum_probs=18.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      .++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            8 TGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            3444455555555555555555555555555555543

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.3e-10  Score=58.87  Aligned_cols=43  Identities=37%  Similarity=0.732  Sum_probs=29.6

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +|+++|.++++|.|++|++.|.....|..|+++|     .++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH-----SREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHH-----HHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            3566677777777777777777777777777766     566666664

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.7e-10  Score=58.12  Aligned_cols=33  Identities=48%  Similarity=0.950  Sum_probs=17.2

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH   34 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGT
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHh
Confidence            444455555555555555555555555555544

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.5e-10  Score=58.74  Aligned_cols=39  Identities=38%  Similarity=0.610  Sum_probs=19.8

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|..|++.|.....|..|++.|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            8 EGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344445555555555555555555555555555555444

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.92  E-value=4.8e-10  Score=56.38  Aligned_cols=36  Identities=28%  Similarity=0.603  Sum_probs=18.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceec
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC  130 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  130 (180)
                      .++++|.|..|++.|.....|..|+..|.+++||.|
T Consensus         7 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            7 GGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            444455555555555555555555555555555544

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=2.6e-10  Score=58.05  Aligned_cols=33  Identities=21%  Similarity=0.515  Sum_probs=16.2

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTH   35 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGG
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            444444444555555555555554555554444

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.2e-10  Score=58.93  Aligned_cols=43  Identities=33%  Similarity=0.612  Sum_probs=27.9

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceecc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT  103 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~  103 (180)
                      +|+++|.++++|.|.+|++.|.....|..|+++|     .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H-----~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH-----ERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHH-----HHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHh-----CCCCCCCCC
Confidence            3566666666677777777776666666666666     555666554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3e-10  Score=57.20  Aligned_cols=33  Identities=36%  Similarity=0.868  Sum_probs=16.7

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH   34 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHH
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHc
Confidence            344444555555555555555555555555444

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=6.7e-10  Score=56.48  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      |+++|.++++|.|.+|++.|.....|..|+++|     .++++|.|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H-----~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALH-----AGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHH-----TTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHH-----CCCCCCCC
Confidence            344555555555555555555555555555555     44555544

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.4e-10  Score=57.76  Aligned_cols=37  Identities=38%  Similarity=0.779  Sum_probs=19.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      .++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            8 TGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4445555555555555555555555555555555553

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=3.8e-10  Score=58.00  Aligned_cols=36  Identities=36%  Similarity=0.591  Sum_probs=17.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCC-CCceec
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTG-ERPYEC  130 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~~C  130 (180)
                      .++++|.|..|++.|.....|..|++.|.+ +++|.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            8 QKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             CCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            344444444444444444444444444444 444444

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=2.9e-10  Score=64.96  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=41.9

Q ss_pred             chhhhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCCC
Q psy3356          52 LVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE  125 (180)
Q Consensus        52 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  125 (180)
                      ..|..|+..+.+.+++.|..|++.|. ...|..|+ .+     .+.+++.|+.|++.+. ...|..|+..+.+.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~-----c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DY-----CGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HH-----HHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hH-----cCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            34566666666677777777777763 56666666 44     5666666766666654 36666666665543

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=3.6e-10  Score=56.91  Aligned_cols=36  Identities=39%  Similarity=0.722  Sum_probs=19.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceec
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC  130 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  130 (180)
                      .++++|.|+.|++.|.....|..|++.|.+++||.|
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            7 GGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            444555555555555555555555555555555544

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.8e-10  Score=57.42  Aligned_cols=41  Identities=22%  Similarity=0.542  Sum_probs=23.6

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      |+++|.++++|.|++|++.|.....|..|+++|     .++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H-----~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH-----TRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHH-----CCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHh-----CCCCCCCC
Confidence            455555556666666666666666666665555     45555544

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.1e-09  Score=55.73  Aligned_cols=33  Identities=45%  Similarity=0.869  Sum_probs=18.2

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |+++|.++++|.|.+|++.|.....|..|+++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH   35 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHh
Confidence            445555555555555555555555555555554

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.83  E-value=4e-09  Score=52.02  Aligned_cols=37  Identities=27%  Similarity=0.494  Sum_probs=28.8

Q ss_pred             cCCCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCccc
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC  166 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C  166 (180)
                      |.++++|.|..|++.|.....|..|+++        |++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNV--------HRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHT--------TCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHH--------cCCCcccee
Confidence            4567788888888888888888888875        667787765

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.9e-09  Score=55.31  Aligned_cols=31  Identities=42%  Similarity=0.784  Sum_probs=15.5

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +.|.++++|.|.+|++.|.....|..|++.|
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIH   35 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHh
Confidence            3444445555555555555555555555544

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=4.1e-09  Score=58.08  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=31.7

Q ss_pred             cCCCCceeccc--cccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         122 HTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       122 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      ..+++||.|..  |++.|.....|..|++.       +|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rr-------iHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQA-------VHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHH-------HSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhh-------hCCCCCCccccc
Confidence            46788999964  99999999999999743       378888888854

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=55.43  Aligned_cols=37  Identities=41%  Similarity=0.723  Sum_probs=23.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      .++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            8 TGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            4555666666666666666666666666666666664

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=55.89  Aligned_cols=39  Identities=33%  Similarity=0.617  Sum_probs=24.3

Q ss_pred             CCCcceecc--ccCcccCChhhHHHHHhhcCCCCceecccc
Q psy3356          95 VKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEIC  133 (180)
Q Consensus        95 ~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  133 (180)
                      .++++|.|.  .|++.|.....|..|++.|.+++||.|..|
T Consensus         8 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            8 TGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566665  566666666666666666666666666554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=4.2e-09  Score=53.19  Aligned_cols=37  Identities=19%  Similarity=0.443  Sum_probs=22.4

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceecc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      .++++|.|..|++.|.....|..|+..|.+++||.|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            6 SGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            4555566666666666666666666666666666654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=1e-08  Score=51.11  Aligned_cols=36  Identities=36%  Similarity=0.685  Sum_probs=26.6

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceec
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC  130 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  130 (180)
                      .++++|.|+.|++.|.....|..|+..|.+++||.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            566777777777777777777777777777777765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=6e-10  Score=63.60  Aligned_cols=54  Identities=22%  Similarity=0.341  Sum_probs=48.1

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHcC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .+.+++.|..|+..|. ...|..|+ .+.+.+++.|+.|++.|. ...|..|++++.
T Consensus        13 c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A           13 CPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             CCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             CCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHcc
Confidence            7889999999999994 89999999 888999999999999887 588999998754

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=2.6e-09  Score=62.82  Aligned_cols=40  Identities=18%  Similarity=0.447  Sum_probs=25.2

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceeccccc
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICG  134 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~  134 (180)
                      .++++|.|..|++.|.....|..|+..|.+++||.|..|.
T Consensus        21 ~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           21 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             CCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            5566666666666666666666666666666666665443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=3.3e-08  Score=47.22  Aligned_cols=29  Identities=28%  Similarity=0.578  Sum_probs=22.6

Q ss_pred             cCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.++++|.|..|++.|.....|..|++.|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   30 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREV   30 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHH
Confidence            56677888888888888888888888763

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.65  E-value=1.1e-08  Score=49.73  Aligned_cols=33  Identities=30%  Similarity=0.727  Sum_probs=27.1

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |++.|.+++||.|+.|++.|.....|..|+++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            556778888888888888888888888888764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-08  Score=49.25  Aligned_cols=30  Identities=30%  Similarity=0.707  Sum_probs=23.6

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|.++++|.|+.|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h   32 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTN   32 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHH
Confidence            566778888888888888888888888764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.62  E-value=2.4e-08  Score=47.25  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=24.4

Q ss_pred             CceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFH  165 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~  165 (180)
                      +||.|++|++.|.....|..|+++        |++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~--------H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL--------HELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH--------HTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH--------hCCCCCCC
Confidence            467888888888888888888876        56777664

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=1.2e-09  Score=64.33  Aligned_cols=61  Identities=13%  Similarity=0.322  Sum_probs=48.9

Q ss_pred             hhHhhhcCCCCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhcCC
Q psy3356          55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        55 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      ..+..+|.++++|.|++|++.|.....|..|+++|     .++++|.|..|.+    ...+..|.+.|.+
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~H-----t~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIH-----NEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHH-----HHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHh-----CCCCCcccchhhh----HHHHHhhhccccc
Confidence            34456788999999999999999999999999998     7889999987654    3444556666654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.59  E-value=3.7e-08  Score=47.08  Aligned_cols=29  Identities=38%  Similarity=0.956  Sum_probs=21.0

Q ss_pred             cCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.++++|.|..|++.|.....|..|+++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H   30 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHc
Confidence            55667777777777777777777777653

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.55  E-value=3.5e-08  Score=47.81  Aligned_cols=33  Identities=33%  Similarity=0.785  Sum_probs=24.9

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |+++|.++++|.|++|++.|.....|..|++.|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            566777777777777777777777777777766

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4.6e-08  Score=47.37  Aligned_cols=30  Identities=23%  Similarity=0.680  Sum_probs=18.6

Q ss_pred             hcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          60 THTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        60 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +|.++++|.|.+|++.|.....|..|++.|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h   32 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTN   32 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHH
Confidence            455566666666666666666666666655

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=1e-07  Score=46.61  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=22.9

Q ss_pred             cCCCCceeccc--cccccCChHHHHHHHHHcC
Q psy3356         122 HTGERPYECEI--CGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       122 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~  151 (180)
                      +.+++||.|+.  |++.|.....|..|+++|+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            45677888875  8888888888888888754

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.51  E-value=8.4e-08  Score=47.08  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=23.8

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCCceec
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC  130 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  130 (180)
                      .++++|.|..|++.|.....|..|+..|.++++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            355666777777777777777777766666666543

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=8.3e-08  Score=46.76  Aligned_cols=35  Identities=29%  Similarity=0.698  Sum_probs=25.2

Q ss_pred             cCCCCceecc--ccccccCChHHHHHHHHHcCCCCCCcCCCCCCc
Q psy3356         122 HTGERPYECE--ICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPF  164 (180)
Q Consensus       122 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~  164 (180)
                      |.++++|.|.  .|++.|.....|..|+++        |++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--------H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHK--------HEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHH--------HHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHH--------hCCCCCC
Confidence            4566778887  488888888888888776        4566655

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=46.21  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=24.9

Q ss_pred             hhcCCCCceeccccccccCChHHHHHH-HHHc
Q psy3356         120 RTHTGERPYECEICGKRFSQKSACNTH-KRTH  150 (180)
Q Consensus       120 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h  150 (180)
                      +.|.+++||.|+.|++.|.....|..| ++.|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            356778888888888888888888888 7764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=2.3e-07  Score=44.49  Aligned_cols=30  Identities=23%  Similarity=0.598  Sum_probs=23.3

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|.++++|.|+.|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            456777888888888888888888888764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.9e-07  Score=44.80  Aligned_cols=30  Identities=30%  Similarity=0.625  Sum_probs=22.9

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|.++++|.|+.|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            356677788888888888888888887764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.42  E-value=1.8e-07  Score=44.47  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=14.6

Q ss_pred             CCcceeccccCcccCChhhHHHHHhhcCCC
Q psy3356          96 KDKPYHCTECEATFSWKQNLEVHMRTHTGE  125 (180)
Q Consensus        96 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  125 (180)
                      ++++|.|..|++.|.....|..|++.|.++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            344445555555555555555555444443

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.7e-07  Score=45.00  Aligned_cols=30  Identities=23%  Similarity=0.600  Sum_probs=22.3

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|.++++|.|..|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            356677788888888888888888887753

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.41  E-value=3.3e-07  Score=50.53  Aligned_cols=37  Identities=32%  Similarity=0.617  Sum_probs=22.7

Q ss_pred             CCCcceeccc--cCcccCChhhHHHHH-hhcCCCCceecc
Q psy3356          95 VKDKPYHCTE--CEATFSWKQNLEVHM-RTHTGERPYECE  131 (180)
Q Consensus        95 ~~~~~~~C~~--C~~~~~~~~~l~~H~-~~h~~~~~~~C~  131 (180)
                      .+++||.|..  |++.|....+|..|+ .+|++++|+.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            4566666643  666666666666665 456666666654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.40  E-value=1.8e-07  Score=44.60  Aligned_cols=32  Identities=28%  Similarity=0.593  Sum_probs=16.9

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGER  126 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  126 (180)
                      .++++|.|..|++.|.....|..|++.|.+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            34455555555555555555555555555443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=2.6e-07  Score=44.27  Aligned_cols=30  Identities=30%  Similarity=0.708  Sum_probs=22.3

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|.++++|.|+.|++.|.....|..|+++|
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            355677788888888888888888887764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.37  E-value=2.7e-07  Score=43.48  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=17.1

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCce
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPY  128 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  128 (180)
                      +|.|+.|++.|.....|..|+..|.++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            455555555555555555555555555554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.37  E-value=2.9e-07  Score=47.41  Aligned_cols=30  Identities=33%  Similarity=0.944  Sum_probs=23.9

Q ss_pred             cCCCCceeccccccccCChHHHHHHHH-HcC
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKR-THI  151 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~  151 (180)
                      |.++++|.|.+|++.|.....|..|++ +|+
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            667788888888888888888888888 643

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.7e-07  Score=45.34  Aligned_cols=30  Identities=23%  Similarity=0.464  Sum_probs=22.9

Q ss_pred             hcCCCCceeccccccccCCh-HHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQK-SACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h  150 (180)
                      .|.++++|.|+.|++.|... ..|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            46677778888888888887 7888887764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=4.3e-07  Score=40.44  Aligned_cols=26  Identities=42%  Similarity=0.843  Sum_probs=21.1

Q ss_pred             CCceeccccccccCChHHHHHHHHHc
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ++||.|+.|++.|.....|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            35788888888888888888888875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=4.3e-07  Score=43.53  Aligned_cols=29  Identities=31%  Similarity=0.629  Sum_probs=21.8

Q ss_pred             cCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.++++|.|+.|++.|.....|..|+++|
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            45667778888888888888888887764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.3e-07  Score=44.90  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=20.1

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHH-HHhc
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTH-KRVH   89 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~   89 (180)
                      ++|.+++||.|++|++.|.....|..| ++.|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            345566666777777777666666666 5555

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.29  E-value=3.7e-07  Score=40.75  Aligned_cols=25  Identities=28%  Similarity=0.701  Sum_probs=19.4

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5778888888888888888887754

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.27  E-value=2.9e-06  Score=46.71  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=23.7

Q ss_pred             cCCCCceeccccccccCChHHHHHHHHHcCC
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKRTHIP  152 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  152 (180)
                      +..++||.|..|++.|.....|..|+++|++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            4556788888888888888888888887653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=7.1e-07  Score=42.72  Aligned_cols=29  Identities=31%  Similarity=0.662  Sum_probs=15.4

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.++++|.|++|++.|.....|..|++.|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            44445555555555555555555555544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=8e-07  Score=42.46  Aligned_cols=29  Identities=34%  Similarity=0.667  Sum_probs=15.2

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.++++|.|++|++.|.....|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            34445555555555555555555555544

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.23  E-value=7.9e-07  Score=39.86  Aligned_cols=25  Identities=60%  Similarity=1.180  Sum_probs=19.3

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ++|.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            5678888888888888888887764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.23  E-value=1.3e-06  Score=39.64  Aligned_cols=25  Identities=40%  Similarity=0.980  Sum_probs=20.0

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHh
Confidence            5788888888888888888888764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.21  E-value=9.1e-07  Score=42.55  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=17.1

Q ss_pred             CCCCceeccccccccCChHHHHHHH
Q psy3356         123 TGERPYECEICGKRFSQKSACNTHK  147 (180)
Q Consensus       123 ~~~~~~~C~~C~~~f~~~~~l~~H~  147 (180)
                      .+++||.|++|++.|.....|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4566777777777777777777765

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.21  E-value=3.4e-08  Score=46.31  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=21.8

Q ss_pred             CceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPF  164 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~  164 (180)
                      +||.|..|++.|.....|..|+++        |++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~--------H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT--------AFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS--------SSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH--------HccCCCC
Confidence            357777777777777777777764        5566665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=5.8e-07  Score=43.32  Aligned_cols=30  Identities=27%  Similarity=0.544  Sum_probs=17.3

Q ss_pred             hcCCCCCcccccchhhccCh-HHHHHHHHhc
Q psy3356          60 THTGERPFECDVCGKRFAQK-STLNTHKRVH   89 (180)
Q Consensus        60 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~   89 (180)
                      +|.++++|.|++|++.|... ..|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            34455556666666666665 5666665554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=1.2e-06  Score=41.81  Aligned_cols=29  Identities=41%  Similarity=0.866  Sum_probs=15.7

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.++++|.|++|++.|.....|..|+++|
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            34445555555555555555555555554

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=7e-07  Score=42.73  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=14.5

Q ss_pred             CCcceeccccCcccCChhhHHHHHhhcCC
Q psy3356          96 KDKPYHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        96 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      ++++|.|..|++.|.....|..|+..|.+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            44445555555555555555555544443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=1.9e-06  Score=41.97  Aligned_cols=30  Identities=23%  Similarity=0.468  Sum_probs=15.8

Q ss_pred             CCCcceeccc--cCcccCChhhHHHHHhhcCC
Q psy3356          95 VKDKPYHCTE--CEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        95 ~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~  124 (180)
                      .+++||.|++  |++.|.....|..|+++|++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3455555543  55555555555555555543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.18  E-value=8.7e-07  Score=42.63  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=17.9

Q ss_pred             CCCcceeccccCcccCChhhHHHHH
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHM  119 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~  119 (180)
                      .++++|.|+.|++.|.....|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4667777777777777777777776

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.17  E-value=1.5e-07  Score=48.27  Aligned_cols=35  Identities=23%  Similarity=0.497  Sum_probs=27.3

Q ss_pred             HHHhhcCCCCceecc--ccccccCChHHHHHHHHHcC
Q psy3356         117 VHMRTHTGERPYECE--ICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .|...|.+++||.|+  .|++.|.....|..|+++|+
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            344567888888895  69999988888888888743

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.16  E-value=1.2e-06  Score=42.30  Aligned_cols=29  Identities=28%  Similarity=0.475  Sum_probs=21.1

Q ss_pred             cCCCCceecc--ccccccCChHHHHHHHHHc
Q psy3356         122 HTGERPYECE--ICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       122 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.++++|.|.  .|++.|.....|..|+++|
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            5566777777  3777777777777777764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.15  E-value=1.7e-06  Score=38.99  Aligned_cols=25  Identities=32%  Similarity=0.862  Sum_probs=19.3

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.|++.|.....|..|+++|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHh
Confidence            3677888888888888888888764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.14  E-value=1.2e-06  Score=45.06  Aligned_cols=29  Identities=34%  Similarity=0.936  Sum_probs=16.7

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHH-hc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKR-VH   89 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~   89 (180)
                      |.++++|.|.+|++.|.....|..|++ .|
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H   31 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSH   31 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSS
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhc
Confidence            445555666666666666656666655 44

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=1.8e-06  Score=41.22  Aligned_cols=27  Identities=37%  Similarity=0.794  Sum_probs=13.0

Q ss_pred             CCCCcccccchhhccChHHHHHHHHhc
Q psy3356          63 GERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++++|.|++|++.|.....|..|+++|
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            344444555555444444444444444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.12  E-value=1.7e-06  Score=41.91  Aligned_cols=33  Identities=33%  Similarity=0.689  Sum_probs=18.8

Q ss_pred             CCcceecc--ccCcccCChhhHHHHHhhcCCCCce
Q psy3356          96 KDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPY  128 (180)
Q Consensus        96 ~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~  128 (180)
                      ++++|.|.  .|++.|.....|..|++.|.++++|
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            45555665  3666666666666666555555543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.12  E-value=1.2e-06  Score=39.51  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=18.0

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.|++.|.....|..|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLH   25 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHh
Confidence            3577777777777777777777664

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=4e-07  Score=40.16  Aligned_cols=25  Identities=56%  Similarity=1.048  Sum_probs=19.2

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            3678888888888888888887764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=1.5e-06  Score=39.10  Aligned_cols=25  Identities=36%  Similarity=0.821  Sum_probs=19.1

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.|++.|.....|..|+++|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHh
Confidence            3677888888888888888887764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.08  E-value=2.7e-06  Score=39.08  Aligned_cols=25  Identities=52%  Similarity=1.120  Sum_probs=19.2

Q ss_pred             Cceecc--ccccccCChHHHHHHHHHc
Q psy3356         126 RPYECE--ICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~--~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+  .|++.|.....|..|+++|
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H   27 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHh
Confidence            367786  7888888888888888763

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.07  E-value=9.8e-07  Score=45.14  Aligned_cols=35  Identities=23%  Similarity=0.478  Sum_probs=25.3

Q ss_pred             hhHhhhcCCCCCcccc--cchhhccChHHHHHHHHhc
Q psy3356          55 QIHMRTHTGERPFECD--VCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        55 ~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~   89 (180)
                      ..|+..|.++++|.|.  .|++.|.....|..|+++|
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            3445567777778884  6888888777788887776

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.06  E-value=2.5e-06  Score=38.64  Aligned_cols=25  Identities=32%  Similarity=0.662  Sum_probs=19.0

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ++|.|..|++.|.....|..|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h   25 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHH
Confidence            3577888888888888888887764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.03  E-value=3.3e-06  Score=39.05  Aligned_cols=25  Identities=40%  Similarity=0.891  Sum_probs=19.1

Q ss_pred             Cceecc--ccccccCChHHHHHHHHHc
Q psy3356         126 RPYECE--ICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~--~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|.  .|++.|.....|..|+++|
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H   28 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHc
Confidence            567787  7888888888888887764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.03  E-value=2.6e-06  Score=37.65  Aligned_cols=24  Identities=42%  Similarity=0.967  Sum_probs=18.3

Q ss_pred             ceeccccccccCChHHHHHHHHHc
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ||.|..|++.|.....|..|+++|
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHc
Confidence            477888888888888888887764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=4.8e-06  Score=37.60  Aligned_cols=25  Identities=32%  Similarity=0.933  Sum_probs=12.7

Q ss_pred             CCcccccchhhccChHHHHHHHHhc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++|.|..|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHh
Confidence            3455555555555555555555444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.00  E-value=3.5e-06  Score=37.29  Aligned_cols=25  Identities=36%  Similarity=0.832  Sum_probs=14.3

Q ss_pred             CCcccccchhhccChHHHHHHHHhc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++|.|++|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4555666666666665666655543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.25  E-value=8e-07  Score=40.20  Aligned_cols=25  Identities=44%  Similarity=0.929  Sum_probs=19.1

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|..|++.|.....|..|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQH   25 (29)
Confidence            3677888888888888888887764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.99  E-value=4.7e-06  Score=37.42  Aligned_cols=26  Identities=27%  Similarity=0.673  Sum_probs=13.0

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCC
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      +|.|+.|++.|.....|..|+..|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            34455555555555555555554443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=2.2e-06  Score=38.45  Aligned_cols=25  Identities=28%  Similarity=0.646  Sum_probs=18.5

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.|++.|.....|..|+++|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHh
Confidence            3577777777777777777777764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.98  E-value=2.7e-07  Score=43.09  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=16.2

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCce
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPY  128 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  128 (180)
                      +|.|..|++.|.....|..|++.|.+++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            345555555555555555555555555443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.97  E-value=3.3e-06  Score=38.29  Aligned_cols=24  Identities=21%  Similarity=0.769  Sum_probs=17.7

Q ss_pred             CceeccccccccCChHHHHHH-HHH
Q psy3356         126 RPYECEICGKRFSQKSACNTH-KRT  149 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H-~~~  149 (180)
                      +||.|+.|++.|.....|..| +++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~   25 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI   25 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH
Confidence            357788888888888888888 454

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.96  E-value=6.7e-06  Score=36.83  Aligned_cols=24  Identities=42%  Similarity=0.917  Sum_probs=13.1

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +|.|++|++.|.....|..|++.|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHHh
Confidence            455555555555555555555544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.18  E-value=1.2e-06  Score=39.88  Aligned_cols=25  Identities=36%  Similarity=0.828  Sum_probs=19.4

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            5678888888888888888887764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.92  E-value=6.9e-06  Score=37.05  Aligned_cols=24  Identities=33%  Similarity=0.668  Sum_probs=13.0

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +|.|++|++.|.....|..|++.|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h   25 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHH
Confidence            455555555555555555555544

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.92  E-value=8.7e-06  Score=36.20  Aligned_cols=24  Identities=58%  Similarity=1.221  Sum_probs=12.0

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +|.|++|++.|.....|..|++.|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CccCCCCCcccCCHHHHHHHHHhc
Confidence            445555555555555555554433

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.91  E-value=6.5e-06  Score=39.53  Aligned_cols=28  Identities=32%  Similarity=0.703  Sum_probs=13.3

Q ss_pred             CCCCCccccc--chhhccChHHHHHHHHhc
Q psy3356          62 TGERPFECDV--CGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        62 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~   89 (180)
                      .++++|.|.+  |++.|.....|..|+++|
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            3444455542  555555555555554444

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.90  E-value=6.8e-06  Score=36.79  Aligned_cols=24  Identities=42%  Similarity=1.024  Sum_probs=12.6

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +|.|++|++.|.....|..|++.|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHHh
Confidence            445555555555555555555544

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.89  E-value=8.6e-06  Score=36.02  Aligned_cols=24  Identities=21%  Similarity=0.618  Sum_probs=12.8

Q ss_pred             CCcccccchhhccChHHHHHHHHh
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRV   88 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~   88 (180)
                      +||.|++|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            345555555555555555555543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.87  E-value=8.5e-06  Score=36.47  Aligned_cols=24  Identities=38%  Similarity=0.890  Sum_probs=18.0

Q ss_pred             ceecc--ccccccCChHHHHHHHHHc
Q psy3356         127 PYECE--ICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       127 ~~~C~--~C~~~f~~~~~l~~H~~~h  150 (180)
                      +|.|.  .|++.|.....|..|+++|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            57777  7777777777777777764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.85  E-value=1.2e-05  Score=44.24  Aligned_cols=29  Identities=28%  Similarity=0.597  Sum_probs=17.1

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +.+++||.|.+|++.|.....|..|+++|
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~H   36 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQH   36 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhh
Confidence            34455666666666666666666666655

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.85  E-value=1.4e-05  Score=36.51  Aligned_cols=25  Identities=44%  Similarity=0.861  Sum_probs=12.3

Q ss_pred             eecc--ccCcccCChhhHHHHHhhcCC
Q psy3356         100 YHCT--ECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus       100 ~~C~--~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      |.|+  .|++.|.....|..|++.|.+
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            4444  455555555555555554443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.84  E-value=1.3e-05  Score=35.23  Aligned_cols=24  Identities=42%  Similarity=0.761  Sum_probs=12.6

Q ss_pred             eeccccCcccCChhhHHHHHhhcC
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      |.|..|++.|.....|..|++.|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            445555555555555555555443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.84  E-value=1.5e-05  Score=36.63  Aligned_cols=26  Identities=31%  Similarity=0.797  Sum_probs=12.5

Q ss_pred             ceecc--ccCcccCChhhHHHHHhhcCC
Q psy3356          99 PYHCT--ECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        99 ~~~C~--~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      +|.|.  .|++.|.....|..|++.|.+
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            34444  455555555555555444443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=7.9e-06  Score=36.51  Aligned_cols=24  Identities=33%  Similarity=0.786  Sum_probs=13.2

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ||.|+.|++.|.....|..|++.|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHh
Confidence            455555555555555555555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.81  E-value=5.4e-05  Score=41.31  Aligned_cols=45  Identities=20%  Similarity=0.389  Sum_probs=29.3

Q ss_pred             cCcccCChhhHHHHH-hhcCCCC------ceecc--ccccccCChHHHHHHHHH
Q psy3356         105 CEATFSWKQNLEVHM-RTHTGER------PYECE--ICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       105 C~~~~~~~~~l~~H~-~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~  149 (180)
                      |++.|.+...|..|+ ..|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            666666666666665 3454433      57775  677777777777777765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.99  E-value=3.1e-06  Score=38.11  Aligned_cols=24  Identities=50%  Similarity=0.948  Sum_probs=14.2

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ||.|++|++.|.....|..|++.|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQH   25 (29)
Confidence            455666666666666666665554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.98  E-value=3.2e-06  Score=37.07  Aligned_cols=24  Identities=54%  Similarity=1.081  Sum_probs=15.3

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ||.|++|++.|.....|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            566666666666666666666544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.73  E-value=2e-05  Score=35.53  Aligned_cols=26  Identities=31%  Similarity=0.709  Sum_probs=13.0

Q ss_pred             ceeccccCcccCChhhHHHH-HhhcCC
Q psy3356          99 PYHCTECEATFSWKQNLEVH-MRTHTG  124 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H-~~~h~~  124 (180)
                      +|.|..|++.|.....|..| +..|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            34455555555555555555 344443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.90  E-value=4.6e-06  Score=37.74  Aligned_cols=25  Identities=36%  Similarity=0.895  Sum_probs=15.3

Q ss_pred             CCcccccchhhccChHHHHHHHHhc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++|.|+.|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            4566666666666666666666554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.51  E-value=8.4e-05  Score=32.97  Aligned_cols=23  Identities=30%  Similarity=0.765  Sum_probs=11.3

Q ss_pred             eecc--ccCcccCChhhHHHHHhhc
Q psy3356         100 YHCT--ECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus       100 ~~C~--~C~~~~~~~~~l~~H~~~h  122 (180)
                      |.|.  .|++.|.....|..|++.|
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHHh
Confidence            4444  4555555555555554444

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00019  Score=39.10  Aligned_cols=54  Identities=17%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             cccchhhccChHHHHHHHH-hccCCCcC-CCcceecc--ccCcccCChhhHHHHHhhc
Q psy3356          69 CDVCGKRFAQKSTLNTHKR-VHISYLHV-KDKPYHCT--ECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        69 C~~C~~~f~~~~~l~~H~~-~~~~~~~~-~~~~~~C~--~C~~~~~~~~~l~~H~~~h  122 (180)
                      +..|++.|.+...|..|+. .|...... ...+|.|.  .|++.+.....|..|++..
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3457788888888888874 44221101 12368886  5888888888888887653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.56  E-value=0.0021  Score=42.14  Aligned_cols=18  Identities=11%  Similarity=0.220  Sum_probs=11.8

Q ss_pred             ccCCcccccccceeeeec
Q psy3356          19 QKNPLVFIPACVFRFSVE   36 (180)
Q Consensus        19 ~~~~~~~c~~C~~~~~~~   36 (180)
                      .-...+.|++|...+...
T Consensus        14 ~~~~~~~C~IC~~~~~~p   31 (170)
T 3hcs_A           14 PLESKYECPICLMALREA   31 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSE
T ss_pred             CCCCCCCCCCCChhhcCc
Confidence            334456888888777643

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.45  E-value=0.0006  Score=42.01  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=23.8

Q ss_pred             hhcCCCCceeccccccccCChHHHHHHHHH
Q psy3356         120 RTHTGERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       120 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ..+.|.++|.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            456677888888888888888888888764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.31  E-value=0.0033  Score=31.29  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=19.4

Q ss_pred             CceeccccccccCChHHHHHHHHH
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      .+|.|+.|+..|.....|..||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            457888888888888888888874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.95  E-value=0.0098  Score=36.99  Aligned_cols=76  Identities=21%  Similarity=0.352  Sum_probs=47.5

Q ss_pred             CCcccccchhhccChHHHHHHH--HhccCCCcCCCcceeccc------cCcccCChhhHHHHHhhcCCCCceeccccccc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHK--RVHISYLHVKDKPYHCTE------CEATFSWKQNLEVHMRTHTGERPYECEICGKR  136 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~--~~~~~~~~~~~~~~~C~~------C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~  136 (180)
                      +++.|.+|...|.+...+..|.  +.|..    ..+.+.+..      =+..+....    +.........|.|..|+..
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~----~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~  102 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHAN----KVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMT  102 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHH----HHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEE
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHH----HHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCE
Confidence            5688999999999999999998  44411    001111100      011111110    1123445667889999999


Q ss_pred             cCChHHHHHHHH
Q psy3356         137 FSQKSACNTHKR  148 (180)
Q Consensus       137 f~~~~~l~~H~~  148 (180)
                      |.+...+..|..
T Consensus       103 f~s~~~~~~H~~  114 (127)
T 1zu1_A          103 FSSPVVAESHYI  114 (127)
T ss_dssp             CSSHHHHHHHHT
T ss_pred             eCCHHHHHHHHC
Confidence            999999999975

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.91  E-value=0.0074  Score=37.56  Aligned_cols=74  Identities=20%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             CeeEeeeecccCCCchhhhHh--hhcCCC-CCcccccc------hhhccChHHHHHHHHhccCCCcCCCcceeccccCcc
Q psy3356          38 EKRFFFFSFLFGPLLVPQIHM--RTHTGE-RPFECDVC------GKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEAT  108 (180)
Q Consensus        38 ~~~~~~C~~~~~~~~~l~~H~--~~h~~~-~~~~C~~C------~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~  108 (180)
                      .+.|.+|+..|.....+..|.  +.|... +.+.+...      +..+....    +     .....+...+.|..|+..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~C~~C~~~  102 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----A-----EISDGEDRSKCCPVCNMT  102 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----S-----CCSSCCCTTTEETTTTEE
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----c-----ccccCCCCCeEcCCCCCE
Confidence            578999999999999999998  444321 12222100      11111100    0     011245667899999999


Q ss_pred             cCChhhHHHHHh
Q psy3356         109 FSWKQNLEVHMR  120 (180)
Q Consensus       109 ~~~~~~l~~H~~  120 (180)
                      |.+...+..|..
T Consensus       103 f~s~~~~~~H~~  114 (127)
T 1zu1_A          103 FSSPVVAESHYI  114 (127)
T ss_dssp             CSSHHHHHHHHT
T ss_pred             eCCHHHHHHHHC
Confidence            999999999975

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.66  E-value=0.013  Score=27.26  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             ceeccccccccCChHHHHHHHHHc
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|.|+.|.+.|.+...|..|....
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhc
Confidence            488999999999999999997764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.31  E-value=0.0031  Score=38.84  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHHHHh
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTHKRV   88 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (180)
                      ..+.+.++|.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            456677788888888888888888888654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.94  E-value=0.065  Score=34.93  Aligned_cols=103  Identities=15%  Similarity=0.263  Sum_probs=69.0

Q ss_pred             cccccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCccc--ccchhhccChHHHHHHHHhccCCCcCCCcceec
Q psy3356          25 FIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC  102 (180)
Q Consensus        25 ~c~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C  102 (180)
                      .||.|...+......          ....+.+-+.    .-...|  .-|+..+. ...+..|....      .-.+..|
T Consensus        55 ~CP~Cr~~~~~~~~~----------~~~~~~~~i~----~l~v~C~n~GC~~~~~-~~~l~~H~~~C------~~~~v~C  113 (170)
T 3hcs_A           55 KCPVDNEILLENQLF----------PDNFAKREIL----SLMVKCPNEGCLHKME-LRHLEDHQAHC------EFALMDC  113 (170)
T ss_dssp             BCTTTCCBCCGGGCE----------ECHHHHHHHH----TSEEECCSTTCCCEEE-GGGHHHHHTTC------TTSEEEC
T ss_pred             CCCCCccCcchhhhh----------hhHHHHHHHh----hcccCCCCCCCCceec-HhHHHHHHhcC------CceeeEC
Confidence            899998877632211          1111222221    233556  35776654 45788887543      5567889


Q ss_pred             cccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         103 TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       103 ~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +.|+..+ ....+..|+...-..+.-.|+.|+..+.. ..+..|...+
T Consensus       114 ~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~  159 (170)
T 3hcs_A          114 PQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNC  159 (170)
T ss_dssp             TTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTC
T ss_pred             CCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhC
Confidence            9999877 57788999987777788899999988754 5689998763

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.21  E-value=0.044  Score=27.27  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=14.5

Q ss_pred             cceeccccCcccCChhhHHHHHh
Q psy3356          98 KPYHCTECEATFSWKQNLEVHMR  120 (180)
Q Consensus        98 ~~~~C~~C~~~~~~~~~l~~H~~  120 (180)
                      ..+.|+.|+..|.....|..|++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            45566666666666666666665

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=93.97  E-value=0.03  Score=31.21  Aligned_cols=61  Identities=18%  Similarity=0.372  Sum_probs=37.1

Q ss_pred             CCceeeeeecccCCcccc-cccceeeeecCCeeEeeeecccCCCchhhhHhhhcCCCCCcccccchhhccChHHHHHHH
Q psy3356           9 SPSVTFDINIQKNPLVFI-PACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHK   86 (180)
Q Consensus         9 ~~~~~~~~~~~~~~~~~c-~~C~~~~~~~~~~~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   86 (180)
                      +..+..|+..-....+.| ..|+..+.                +..|..|+...-...+..|..|+..+.. ..|..|.
T Consensus         2 ~~~l~~H~~~C~~~~v~C~~~C~~~v~----------------r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A            2 SSGSSGHLNTCSFNVIPCPNRCPMKLS----------------RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             CCSCSCCCCCCCCSCCBCTTCCSCBCC----------------SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             chHHHHHHHHCCCcccCCCccccHHhh----------------HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHH
Confidence            345666766555555577 46765544                4556667654444556778888877654 4466665

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.88  E-value=0.16  Score=23.68  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             CCceeccccccccCChHHHHHHHHH
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ...+.|..|+..|....++..|.+-
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhee
Confidence            3457899999999999999999773

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.43  E-value=0.13  Score=23.86  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             CcccccchhhccChHHHHHHHHhcc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVHI   90 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~~   90 (180)
                      .|.||+|.+.+.+...|..|....|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            3788999998888888888876554

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=91.00  E-value=0.031  Score=31.15  Aligned_cols=16  Identities=19%  Similarity=0.796  Sum_probs=8.9

Q ss_pred             eeccccCcccCChhhH
Q psy3356         100 YHCTECEATFSWKQNL  115 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l  115 (180)
                      -.||.||....+...+
T Consensus         9 ~~~PlCG~~L~W~eLI   24 (95)
T 2k5c_A            9 AKCPICGSPLKWEELI   24 (95)
T ss_dssp             EECSSSCCEECHHHHH
T ss_pred             ccCCcCCCccCHHHHH
Confidence            3566666665554443

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=90.55  E-value=0.32  Score=27.14  Aligned_cols=39  Identities=26%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCCCCceeccccccccC
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFS  138 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  138 (180)
                      .+.|..|+.++. +..+..|.....+-..|.|..|+..|.
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeC
Confidence            345555554432 444555544433333455555555554

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=89.15  E-value=0.41  Score=21.04  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=17.5

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      |.|++|+....+...+..|...
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e~   25 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVME   25 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHHH
Confidence            6788888888888888888653

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=88.04  E-value=0.46  Score=26.53  Aligned_cols=47  Identities=19%  Similarity=0.449  Sum_probs=34.8

Q ss_pred             CCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHH
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH  118 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H  118 (180)
                      ..|.|..|+.++.. ..+..|....     .+...+.|..|+..|.. ..+..|
T Consensus         9 V~F~C~~Cgd~lKK-~kv~~H~~~C-----r~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A            9 VFFTCNACGESVKK-IQVEKHVSNC-----RNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             CEEEESSSCCEEET-THHHHHHHHC-----TTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             eEEEcCCCCCeeec-ccchhHHhhC-----CCCCcEEecccCCeeCC-CCEeCE
Confidence            45889999988765 4688898776     44567899999999874 444444

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=85.00  E-value=0.46  Score=27.90  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             CCCcccc---cchhhccChHHHHHHHHhccC
Q psy3356          64 ERPFECD---VCGKRFAQKSTLNTHKRVHIS   91 (180)
Q Consensus        64 ~~~~~C~---~C~~~f~~~~~l~~H~~~~~~   91 (180)
                      +..|.|.   .|.++|.+..+|+.|+..-|.
T Consensus        56 ~~if~C~~~~~CkrtyLs~rdlqaHI~~~H~   86 (101)
T 3vk6_A           56 GSLFMCSIVQGCKRTYLSQRDLQAHINHRHM   86 (101)
T ss_dssp             GGCCCCCCCCCCCCCCSSHHHHHHHHHHHTT
T ss_pred             CCEEECCCCCCHHHHhcCHHHHHHHHHHHhh
Confidence            4557777   488888888888888876553

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=84.72  E-value=1.4  Score=22.58  Aligned_cols=21  Identities=29%  Similarity=0.695  Sum_probs=10.2

Q ss_pred             cccchhhccChHHHHHHHHhc
Q psy3356          69 CDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        69 C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.+|.....+...|..|....
T Consensus         6 C~~C~~ECET~kEl~~H~~sC   26 (57)
T 2k9h_A            6 CDVCHHECETAKELESHRQSC   26 (57)
T ss_dssp             CTTTCCBCSSTTTHHHHHHHH
T ss_pred             hhHHHhhhhhHHHHHHHhccC
Confidence            444444444444555554443

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=84.44  E-value=0.64  Score=27.29  Aligned_cols=45  Identities=13%  Similarity=0.330  Sum_probs=32.8

Q ss_pred             eeccccCcccCChhhHHHHHhhcCCCCceecc---ccccccCChHHHHHHHHHcC
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTHTGERPYECE---ICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~---~C~~~f~~~~~l~~H~~~h~  151 (180)
                      -.|+.|...+.....       +..+..|.|.   .|.++|.+..+|+.|+..-|
T Consensus        38 k~Cp~C~~~V~rVe~-------~~~~~if~C~~~~~CkrtyLs~rdlqaHI~~~H   85 (101)
T 3vk6_A           38 KMCPGCSDPVQRIEQ-------CTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRH   85 (101)
T ss_dssp             CBCTTTCCBCSEEEE-------EEGGGCCCCCCCCCCCCCCSSHHHHHHHHHHHT
T ss_pred             CCCcCcCCeeeeeEE-------eccCCEEECCCCCCHHHHhcCHHHHHHHHHHHh
Confidence            468888877654322       2335668897   59999999999999998643

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=83.50  E-value=1.8  Score=19.42  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=12.8

Q ss_pred             eeccccCcccCChhhHHHHHhh
Q psy3356         100 YHCTECEATFSWKQNLEVHMRT  121 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~  121 (180)
                      ..|..|.+.+.+..+|..|++.
T Consensus        10 qhcrfckkkysdvknlikhire   31 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666666666553

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=83.11  E-value=0.5  Score=23.49  Aligned_cols=9  Identities=33%  Similarity=0.899  Sum_probs=3.7

Q ss_pred             eeccccCcc
Q psy3356         100 YHCTECEAT  108 (180)
Q Consensus       100 ~~C~~C~~~  108 (180)
                      |.|.+||..
T Consensus         5 y~C~vCGyv   13 (46)
T 6rxn_A            5 YVCNVCGYE   13 (46)
T ss_dssp             EEETTTCCE
T ss_pred             EECCCCCeE
Confidence            344444433

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=82.32  E-value=0.96  Score=26.78  Aligned_cols=12  Identities=42%  Similarity=1.093  Sum_probs=8.5

Q ss_pred             Cceecccccccc
Q psy3356         126 RPYECEICGKRF  137 (180)
Q Consensus       126 ~~~~C~~C~~~f  137 (180)
                      .|+.|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            457777777777

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=81.50  E-value=0.5  Score=31.75  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=18.9

Q ss_pred             CceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCCCcc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG  171 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~C~~  171 (180)
                      ..|.|.+||..+.                     |..|..||+|+-
T Consensus       170 ~~~~C~~CG~i~~---------------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHK---------------------GEDFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEE---------------------SSCCSBCTTTCC
T ss_pred             cEEEECCCCCEEc---------------------CcCCCCCCCCCC
Confidence            4589999998753                     235688999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-12
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	3e-12
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-11
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-07
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-11
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	5e-11
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-07
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	4e-11
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-10
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	4e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	4e-11
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	7e-11
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	2e-09
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	9e-11
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	2e-10
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	6e-08
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-10
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-10
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	9e-06
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	1e-08
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-08
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	1e-06
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-08
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	4e-07
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	7e-07
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	3e-08
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.002
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-08
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-06
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	6e-08
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	6e-08
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	1e-07
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	4e-07
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	5e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	1e-06
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	4e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	4e-05
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	3e-06
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	5e-06
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	9e-06
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	3e-06
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	6e-06
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	3e-05
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-05
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	2e-05
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	4e-05
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	2e-05
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	2e-04
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	3e-04
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	3e-05
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	8e-05
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	1e-04
d1a1ia3	28	g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus)	9e-05
d1a1ia3	28	g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus)	0.001
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.002
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.002
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.004

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (138), Expect = 1e-12
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHIS 91
            R  TG +PF+C  C + F++   L  H++ H+ 
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (136), Expect = 3e-12
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHI 151
             R  TG +P++C  C + FS+      H++ H+
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 97  DKPYHCTECEATFSWKQNLEVHMR-THTGERPYECEI 132
            KPY C  C   FS   +L  H++  HT ERP++C++
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC 166
           +  +PY C+ CGK FS+    N H +       +VH  +RP  C
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIK-------QVHTSERPHKC 37

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (129), Expect = 3e-11
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
          RTHTGE+P+ C  C K F QK  L+ H + +
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (127), Expect = 5e-11
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           RTHTGE+PY C  C K F QK   + H + +
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (103), Expect = 2e-07
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
           H  +KPY C+ C+ TF  KQ L++H + +   
Sbjct: 3   HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 4e-11
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 97  DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           DK Y C +C  +F+ K   + HM  H G RPY C +CGK+F  K     H + H
Sbjct: 1   DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 3e-10
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 64  ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
           ++ + C  CGK F  KS  + H  +H+           C  C   F  K +L  HM+ H
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYG-----CGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
            HM  H G RP+ C VCGK+F  K  L  H ++H
Sbjct: 19 DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 4e-04
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
           ++ Y C+ CGK F+ KS  + H   H+          RP+ C  C   F  K +L
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL--------RPYGCGVCGKKFKMKHHL 46

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (128), Expect = 4e-11
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVH 89
          H+GE+P+ C  CGK F++ S L  H+RVH
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (127), Expect = 7e-11
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
           H+GE+PY C  CGK FS+ S    H+R H
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (116), Expect = 2e-09
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
           H  +KPY C EC   FS    L  H R HTGE
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 9e-11
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
                  R ++CD CGK F+  S L+ H+R H
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (123), Expect = 2e-10
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
                   R Y+C+ CGK FS  S  + H+RTH
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 6e-08
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 85  HKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
            +         + + Y C EC  +FS   +L  H RTHTGE
Sbjct: 3   SEWQQR-----ERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (125), Expect = 1e-10
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
          RTH+GE+P+EC +C  RF Q  T+  H    
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQK 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (125), Expect = 1e-10
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
           RTH+GE+PYEC IC  RF+Q      H    
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQK 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (91), Expect = 9e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVH-MRTHTGE 125
           H  +KPY C  C A F+    +++H ++ HT  
Sbjct: 3   HSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (110), Expect = 1e-08
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
            +G+RP+ C IC   F+ K+ C  H + H
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVH 30

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (110), Expect = 2e-08
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVH 89
           +G+RPF C +C   F  K+    H +VH
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKVH 30

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (96), Expect = 1e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 94  HVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
               +P+ C  C + F+ K N   H++ HT  
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 46.1 bits (110), Expect = 2e-08
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGER 126
           + + C  C   F+ +++L+ H R+HT E+
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 42.2 bits (100), Expect = 4e-07
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
          R F C+VC + FA++  L  H R H
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSH 25

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 41.8 bits (99), Expect = 7e-07
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
           R + CE+C + F+++     H R+H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSH 25

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 3e-08
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 100 YHCTE--CEATFSWKQNLEVHMRTHTGERPYECE 131
           + C E  C  +F++K++L+ HM+ H+  R Y CE
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 55 QIHMRTHTGERPFECD 70
          + HM+ H+  R + C+
Sbjct: 20 KEHMKLHSDTRDYICE 35

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (108), Expect = 3e-08
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTGER 126
           K + C EC   F    +L  H++TH  ++
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 3e-06
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
          + F C  C KRF +   L+ H + H
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTH 25

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 3e-06
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
           + + C  C KRF +    + H +TH
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTH 25

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (106), Expect = 6e-08
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
           ++P++C IC + FS+     TH RTH
Sbjct: 1   QKPFQCRICMRNFSRSDHLTTHIRTH 26

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (106), Expect = 6e-08
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
          ++PF+C +C + F++   L TH R H
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTHIRTH 26

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (104), Expect = 1e-07
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHTG 124
           KP+ C  C   FS   +L  H+RTHTG
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (100), Expect = 4e-07
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 98  KPYHCT--ECEATFSWKQNLEVHMRTHTGER 126
           +P+ CT   C   F+    L+ H RTHTGE+
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
          RPF C    CGKRF +   L  HKR H
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTH 27

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 5e-05
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
           RP+ C    CGKRF++      HKRTH
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTH 27

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 98  KPYHCTE--CEATFSWKQNLEVHMRTHTGE 125
           KP+ CT   C  ++S  +NL+ H+R+HTGE
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 4e-05
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
          +P +C    C K +++   L TH R H
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSH 27

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 4e-05
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
           +P++C  E C K +S+     TH R+H
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSH 27

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (94), Expect = 3e-06
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
           +PY+C  CGK FSQ S    H+R H
Sbjct: 1   KPYKCLECGKAFSQNSGLINHQRIH 25

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (93), Expect = 5e-06
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
          +P++C  CGK F+Q S L  H+R+H
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIH 25

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (91), Expect = 9e-06
 Identities = 13/26 (50%), Positives = 13/26 (50%)

Query: 98  KPYHCTECEATFSWKQNLEVHMRTHT 123
           KPY C EC   FS    L  H R HT
Sbjct: 1   KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (94), Expect = 3e-06
 Identities = 7/41 (17%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 112 KQNLEVHMRTHTGERPYECEIC--GKRFSQKSACNTHKRTH 150
           + +++ +++    ++ +EC      K F ++    +H +TH
Sbjct: 4   RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (92), Expect = 6e-06
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 77  AQKSTLNTHKRVHISYLHVKDKPYHCTECEA--TFSWKQNLEVHMRTHTGER 126
             + +++ + +       + DK + C       TF  + N+  H++TH  +R
Sbjct: 2   LPRGSIDKYVK------EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 57 HMRTHTGERPFECDVC--GKRFAQKSTLNTHKRVH 89
                 ++ FEC      K F ++  + +H + H
Sbjct: 9  KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVH 89
          +RP+ CD   C K F +   L  HK+ H
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTH 150
           +RPY C    C K F +      HK++H
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (86), Expect = 4e-05
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 97  DKPYHCTE--CEATFSWKQNLEVHMRTHTGE 125
           D+PY C    C+  F    +L  H ++H  +
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 98  KPYHCTE--CEATFSWKQNLEVHMRTHTGE 125
           KP+ CT   C   FS   NL  H+R HTG+
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
          +PF+C    CGKRF+    L TH R+H
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIH 27

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 3e-04
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 126 RPYECEI--CGKRFSQKSACNTHKRTH 150
           +P++C    CGKRFS      TH R H
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRIH 27

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (87), Expect = 3e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 98  KPYHCTE--CEATFSWKQNLEVHMRTHTG 124
           +PY C    C+  FS   +L  H+R HTG
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (84), Expect = 8e-05
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
           RPY C  E C +RFS+ +    H R H
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIH 27

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
          RP+ C V  C +RF++ + L  H R+H
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIH 27

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 9e-05
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHI 90
          E+PF CD+CG++FA+      H ++H+
Sbjct: 1  EKPFACDICGRKFARSDERKRHTKIHL 27

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.9 bits (75), Expect = 0.001
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
           E+P+ C+ICG++F++      H + H+
Sbjct: 1   EKPFACDICGRKFARSDERKRHTKIHL 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
          RP+ C    C K+FAQ + L +H   H
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (73), Expect = 0.002
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 126 RPYECEI--CGKRFSQKSACNTHKRTH 150
           RPY C    C K+F+Q +   +H  TH
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.6 bits (72), Expect = 0.004
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 98  KPYHCTE--CEATFSWKQNLEVHMRTHT 123
           +PY C    C   F+   NL+ H+ TH 
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.63
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.55
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.17
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.12
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.09
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.08
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.06
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.03
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.03
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.0
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.98
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.97
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.96
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.93
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.93
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.9
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.89
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.84
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.81
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.73
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.72
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.67
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.65
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.62
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.62
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.54
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.54
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.43
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.43
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.38
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.32
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.24
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.19
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.09
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.07
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.02
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.89
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.88
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.77
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.77
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.75
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.75
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.66
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.48
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.44
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.42
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.36
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.35
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.34
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.27
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.26
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.25
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.21
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.16
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.1
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.08
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.07
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.04
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.94
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.94
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.9
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.87
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.86
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.86
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.72
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.68
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.64
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.6
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.56
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.51
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.42
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.29
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.13
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.92
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.66
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.51
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.46
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.45
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.23
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.14
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.12
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.0
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.76
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.72
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.46
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.45
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	94.04
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.01
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.68
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.91
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.26
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.25
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.98
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.21
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.0
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.6
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.43
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.75
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.57
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.98
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	86.94
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	86.49
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	85.11
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	85.02
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	82.61
d1fu9a_	36	U-shaped transcription factor, different fingers {	81.63
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	81.55
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	81.5
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	80.81
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	80.17

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-16  Score=83.62  Aligned_cols=53  Identities=42%  Similarity=0.862  Sum_probs=42.8

Q ss_pred             CcceeccccCcccCChhhHHHHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356          97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus        97 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +++|.|. ||+.|.....|..|+++|.+++||.|.+|++.|.....|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4678884 8888888888888888888888888888888888888888887753

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-15  Score=78.70  Aligned_cols=53  Identities=36%  Similarity=0.792  Sum_probs=48.3

Q ss_pred             CCCcccccchhhccChHHHHHHHHhccCCCcCCCcceeccccCcccCChhhHHHHHhhc
Q psy3356          64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h  122 (180)
                      ++||+| .|++.|.....|..|+++|     .++++|.|..|++.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~H-----t~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMH-----LGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHH-----SCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhcc-----ccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578999 5999999999999999998     8999999999999999999999998876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.4e-14  Score=67.16  Aligned_cols=38  Identities=39%  Similarity=0.851  Sum_probs=33.2

Q ss_pred             CCCceeccccccccCChHHHHHHHHHcCCCCCCcCCCCCCcccCC
Q psy3356         124 GERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA  168 (180)
Q Consensus       124 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~~  168 (180)
                      .++||.|..|++.|....+|..|++.       +|++++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~-------~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQ-------VHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH-------TSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcC-------ccCCCcCcCCcC
Confidence            36899999999999999999999875       588999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.5e-12  Score=61.78  Aligned_cols=34  Identities=38%  Similarity=0.726  Sum_probs=30.0

Q ss_pred             HHHhhcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       117 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +|+..|.+++||.|++|++.|...++|..|+++|
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~H   35 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH   35 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccC
Confidence            4678899999999999999999999999999874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.3e-11  Score=57.70  Aligned_cols=35  Identities=43%  Similarity=0.917  Sum_probs=24.7

Q ss_pred             CcceeccccCcccCChhhHHHHHh-hcCCCCceecc
Q psy3356          97 DKPYHCTECEATFSWKQNLEVHMR-THTGERPYECE  131 (180)
Q Consensus        97 ~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~  131 (180)
                      ++||.|..|++.|....+|..|++ .|.+++||.|+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            567777777777777777777764 57777777765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.2e-11  Score=56.07  Aligned_cols=30  Identities=50%  Similarity=0.985  Sum_probs=25.6

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .|++++||+|.+|+++|...+.|..|+++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            478888999999999999999999998874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-11  Score=58.97  Aligned_cols=34  Identities=35%  Similarity=0.744  Sum_probs=28.2

Q ss_pred             hHhhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        56 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +|+.+|.+++||.|++|++.|.....|..|+++|
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~H   35 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH   35 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccC
Confidence            5778888888888888888888888888888877

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.5e-11  Score=58.57  Aligned_cols=34  Identities=29%  Similarity=0.730  Sum_probs=28.8

Q ss_pred             HHhhcCCCCceeccccccccCChHHHHHHHHHcC
Q psy3356         118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       118 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      |.+.|++++||.|++|++.|.....|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5678888999999999999999999999988753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.2e-11  Score=55.77  Aligned_cols=32  Identities=47%  Similarity=0.840  Sum_probs=27.0

Q ss_pred             hhcCCCCceeccccccccCChHHHHHHHHHcC
Q psy3356         120 RTHTGERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       120 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      ++|++++||.|.+|++.|.....|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            36888889999999999999999999988754

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=3.9e-11  Score=57.12  Aligned_cols=33  Identities=33%  Similarity=0.785  Sum_probs=27.7

Q ss_pred             HhhhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        57 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.++|.+++||.|++|++.|.....|..|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            567888888888888888888888888888876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=8.2e-11  Score=54.87  Aligned_cols=30  Identities=37%  Similarity=0.917  Sum_probs=24.0

Q ss_pred             cCCCCceeccccccccCChHHHHHHHHHcC
Q psy3356         122 HTGERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       122 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      |+|++||.|++|++.|.....|..|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            567888888888888888888888888753

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=7.9e-11  Score=51.99  Aligned_cols=27  Identities=41%  Similarity=0.915  Sum_probs=22.6

Q ss_pred             CCceeccccccccCChHHHHHHHHHcC
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      ++||.|++|++.|.....|..|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            578888888888888888888888754

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.98  E-value=1.8e-10  Score=51.41  Aligned_cols=24  Identities=29%  Similarity=0.815  Sum_probs=21.3

Q ss_pred             CceeccccccccCChHHHHHHHHH
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      +||.|++|++.|.....|..|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             CcCCCCCCCCCCCCchHcccccCc
Confidence            578999999999999999999987

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.9e-10  Score=52.83  Aligned_cols=29  Identities=52%  Similarity=1.084  Sum_probs=17.2

Q ss_pred             cCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          61 HTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      |.+++||.|.+|++.|.....|..|+++|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            45555666666666666666666665555

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-10  Score=54.02  Aligned_cols=30  Identities=47%  Similarity=0.922  Sum_probs=25.4

Q ss_pred             hcCCCCceeccccccccCChHHHHHHHHHc
Q psy3356         121 THTGERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       121 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +|+|++||.|+.|++.|....+|..|++.+
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            688889999999999999999999997653

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.5e-10  Score=53.31  Aligned_cols=31  Identities=48%  Similarity=0.902  Sum_probs=21.0

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++|.+++||.|.+|++.|.....|..|+++|
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            3566667777777777777776777776666

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-10  Score=53.81  Aligned_cols=32  Identities=31%  Similarity=0.755  Sum_probs=25.5

Q ss_pred             eeccc--cccccCChHHHHHHHHHcCCCCCCcCCCCCCcccC
Q psy3356         128 YECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP  167 (180)
Q Consensus       128 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~h~~~~~~~C~  167 (180)
                      |.|+.  |++.|.....|.+|+++        |+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~--------Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL--------HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH--------HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe--------eCCCCCEeCC
Confidence            66765  88888888888888886        6788888886

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3e-10  Score=48.85  Aligned_cols=25  Identities=52%  Similarity=1.002  Sum_probs=21.6

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||+|.+||+.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            5888999999999999999998875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.9e-10  Score=50.24  Aligned_cols=25  Identities=32%  Similarity=0.731  Sum_probs=21.0

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|++|++.|...+.|..|+++|
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~H   25 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTH   25 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCcc
Confidence            5788888888888888888888873

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.4e-10  Score=52.10  Aligned_cols=31  Identities=45%  Similarity=0.937  Sum_probs=22.7

Q ss_pred             hhcCCCCCcccccchhhccChHHHHHHHHhc
Q psy3356          59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        59 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++|.+++||.|++|++.|....+|..|++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            3577777777777777777777777776554

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.3e-09  Score=50.69  Aligned_cols=29  Identities=31%  Similarity=0.680  Sum_probs=14.1

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      +|++||.|.+|++.|....+|..|++.|.
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccC
Confidence            34444444444444444444444444443

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.1e-10  Score=57.38  Aligned_cols=36  Identities=22%  Similarity=0.611  Sum_probs=28.5

Q ss_pred             hHHHHHhhcCCCCceeccc--cccccCChHHHHHHHHHc
Q psy3356         114 NLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       114 ~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  150 (180)
                      .+..|+. |.+++||.|++  |++.|.....|..|+++|
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~H   43 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccc
Confidence            4455664 88888899976  999999999999998874

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2e-09  Score=47.41  Aligned_cols=26  Identities=38%  Similarity=0.993  Sum_probs=15.6

Q ss_pred             CCCcccccchhhccChHHHHHHHHhc
Q psy3356          64 ERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++||.|++|++.|.....|..|+++|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCc
Confidence            35566666666666666666666555

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.73  E-value=4e-09  Score=46.94  Aligned_cols=24  Identities=42%  Similarity=0.917  Sum_probs=12.9

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ||.|++|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~H   25 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTT
T ss_pred             cCCCCCCCCCCCCchHcccccCcc
Confidence            455555555555555555555555

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.8e-09  Score=49.92  Aligned_cols=32  Identities=41%  Similarity=0.999  Sum_probs=25.0

Q ss_pred             eeccc--cCcccCChhhHHHHHhhcCCCCceecc
Q psy3356         100 YHCTE--CEATFSWKQNLEVHMRTHTGERPYECE  131 (180)
Q Consensus       100 ~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~  131 (180)
                      |.|+.  |++.|.....|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56665  888888888888888888888888875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.8e-09  Score=46.32  Aligned_cols=24  Identities=38%  Similarity=0.816  Sum_probs=13.8

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ||.|++|++.|.....|..|+++|
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~H   25 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTH   25 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGG
T ss_pred             CEECCcCCCeecchHHhhhhcCcc
Confidence            455555555555555555555555

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.2e-08  Score=45.50  Aligned_cols=26  Identities=35%  Similarity=0.758  Sum_probs=21.6

Q ss_pred             Cceeccc--cccccCChHHHHHHHHHcC
Q psy3356         126 RPYECEI--CGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       126 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  151 (180)
                      +||.|+.  |++.|.....|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            5788877  9999999999999988743

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=3.2e-09  Score=52.99  Aligned_cols=37  Identities=22%  Similarity=0.484  Sum_probs=25.0

Q ss_pred             chhhhHhhhcCCCCCccccc--chhhccChHHHHHHHHhc
Q psy3356          52 LVPQIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        52 ~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~   89 (180)
                      ..+..|+. |.+++||.|.+  |++.|.....|..|+++|
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~H   43 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccc
Confidence            44555653 67777777765  777777777777777776

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.8e-09  Score=44.31  Aligned_cols=25  Identities=48%  Similarity=1.047  Sum_probs=15.2

Q ss_pred             CCcccccchhhccChHHHHHHHHhc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +||+|++||+.|.....|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            3566666666666666666666554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.5e-08  Score=45.30  Aligned_cols=26  Identities=46%  Similarity=0.968  Sum_probs=20.8

Q ss_pred             Cceeccc--cccccCChHHHHHHHHHcC
Q psy3356         126 RPYECEI--CGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       126 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  151 (180)
                      +||.|+.  |++.|.....|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            5788866  8888888888888888743

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.7e-08  Score=44.84  Aligned_cols=24  Identities=50%  Similarity=1.084  Sum_probs=19.5

Q ss_pred             Cceecc--ccccccCChHHHHHHHHH
Q psy3356         126 RPYECE--ICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       126 ~~~~C~--~C~~~f~~~~~l~~H~~~  149 (180)
                      +||.|+  .|++.|.....|..|+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc
Confidence            478884  588888888888888886

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=3.4e-08  Score=43.63  Aligned_cols=26  Identities=42%  Similarity=0.986  Sum_probs=20.2

Q ss_pred             Cceeccc--cccccCChHHHHHHHHHcC
Q psy3356         126 RPYECEI--CGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       126 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  151 (180)
                      +||.|++  |++.|.....|..|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            5788866  8888888888888888753

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=6.6e-08  Score=43.74  Aligned_cols=27  Identities=37%  Similarity=0.864  Sum_probs=21.4

Q ss_pred             CCceeccc--cccccCChHHHHHHHHHcC
Q psy3356         125 ERPYECEI--CGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       125 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~  151 (180)
                      ++||.|+.  |++.|.....|..|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            46788876  8888888888888888754

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.8e-08  Score=43.00  Aligned_cols=25  Identities=44%  Similarity=0.947  Sum_probs=20.0

Q ss_pred             Cceeccc--cccccCChHHHHHHHHHc
Q psy3356         126 RPYECEI--CGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~--C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|+.  |++.|...++|..|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            4788866  888888888888888875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.3e-07  Score=42.06  Aligned_cols=26  Identities=46%  Similarity=0.942  Sum_probs=12.6

Q ss_pred             ceeccc--cCcccCChhhHHHHHhhcCC
Q psy3356          99 PYHCTE--CEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        99 ~~~C~~--C~~~~~~~~~l~~H~~~h~~  124 (180)
                      ||.|++  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            344444  55555555555555544443

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.5e-07  Score=41.95  Aligned_cols=26  Identities=50%  Similarity=0.967  Sum_probs=12.7

Q ss_pred             ceeccc--cCcccCChhhHHHHHhhcCC
Q psy3356          99 PYHCTE--CEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        99 ~~~C~~--C~~~~~~~~~l~~H~~~h~~  124 (180)
                      ||.|++  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            444544  55555555555555554443

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.6e-07  Score=40.65  Aligned_cols=27  Identities=48%  Similarity=0.935  Sum_probs=15.9

Q ss_pred             ceecc--ccCcccCChhhHHHHHhhcCCC
Q psy3356          99 PYHCT--ECEATFSWKQNLEVHMRTHTGE  125 (180)
Q Consensus        99 ~~~C~--~C~~~~~~~~~l~~H~~~h~~~  125 (180)
                      ||.|+  .|++.|...++|..|+++|+++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            45553  3666666666666666666554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=5.5e-07  Score=37.86  Aligned_cols=26  Identities=35%  Similarity=1.069  Sum_probs=22.0

Q ss_pred             CCceeccccccccCChHHHHHHHHHc
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ++||.|..||+.|..+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            47889999999999888888888875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=8.1e-07  Score=38.77  Aligned_cols=22  Identities=45%  Similarity=0.770  Sum_probs=11.6

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ..|..||+.|.+...|.+|.-.
T Consensus         6 ~~ce~cgk~frdvyhlnrhkls   27 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLS   27 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGG
T ss_pred             hhHHHHHHHHHHHHHHHhhhcc
Confidence            3455555555555555555443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.4e-06  Score=37.16  Aligned_cols=28  Identities=43%  Similarity=0.923  Sum_probs=23.2

Q ss_pred             CCceeccccccccCChHHHHHHHHHcCC
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTHIP  152 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  152 (180)
                      ++||.|++|...|.....+..|.+.|.+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4788899999999888888888888653

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=1.4e-06  Score=39.20  Aligned_cols=26  Identities=31%  Similarity=0.857  Sum_probs=13.1

Q ss_pred             cceeccc--cCcccCChhhHHHHHhhcC
Q psy3356          98 KPYHCTE--CEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        98 ~~~~C~~--C~~~~~~~~~l~~H~~~h~  123 (180)
                      +||.|.+  |++.|....+|.+|+++|.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            3445544  5555555555555555544

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=8.3e-07  Score=39.04  Aligned_cols=25  Identities=44%  Similarity=0.938  Sum_probs=12.8

Q ss_pred             ceeccc--cCcccCChhhHHHHHhhcC
Q psy3356          99 PYHCTE--CEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        99 ~~~C~~--C~~~~~~~~~l~~H~~~h~  123 (180)
                      ||.|++  |++.|....+|.+|+++|+
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccC
Confidence            445544  5555555555555555543

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.2e-06  Score=37.36  Aligned_cols=31  Identities=35%  Similarity=0.662  Sum_probs=27.8

Q ss_pred             cceeccccCcccCChhhHHHHHhhcCCCCce
Q psy3356          98 KPYHCTECEATFSWKQNLEVHMRTHTGERPY  128 (180)
Q Consensus        98 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  128 (180)
                      +...|..||+.|.+...|.+|...|.+++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4567999999999999999999999999987

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.1e-06  Score=36.59  Aligned_cols=26  Identities=46%  Similarity=1.044  Sum_probs=22.1

Q ss_pred             CCCcccccchhhccChHHHHHHHHhc
Q psy3356          64 ERPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ++||.|++|+..|..+..|.-|++.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            47888888888888888888888887

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-06  Score=35.21  Aligned_cols=23  Identities=52%  Similarity=0.969  Sum_probs=15.7

Q ss_pred             eeccccccccCChHHHHHHHHHc
Q psy3356         128 YECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      .+|++|++-|.....|..|++.|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CccchhhhHhcchhHHHHHhhcc
Confidence            46677777777777777777664

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.1e-06  Score=37.29  Aligned_cols=24  Identities=42%  Similarity=0.940  Sum_probs=11.4

Q ss_pred             Cccccc--chhhccChHHHHHHHHhc
Q psy3356          66 PFECDV--CGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~--C~~~f~~~~~l~~H~~~~   89 (180)
                      ||.|+.  |++.|.....|..|+++|
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            444444  455554444454444443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=6.1e-06  Score=34.31  Aligned_cols=27  Identities=37%  Similarity=0.752  Sum_probs=21.1

Q ss_pred             CCceeccccccccCChHHHHHHHHHcC
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      ++||+|..|.+.-...++|..|++.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            467888888888888888888888743

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.1e-05  Score=32.65  Aligned_cols=23  Identities=48%  Similarity=0.878  Sum_probs=12.8

Q ss_pred             eccccCcccCChhhHHHHHhhcC
Q psy3356         101 HCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus       101 ~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      .|++|++-|..+..|..|++.|+
T Consensus         3 kc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             ccchhhhHhcchhHHHHHhhccC
Confidence            45555555555555555555554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.6e-05  Score=33.79  Aligned_cols=25  Identities=36%  Similarity=0.887  Sum_probs=18.4

Q ss_pred             Cceeccc--cccccCChHHHHHHHHHc
Q psy3356         126 RPYECEI--CGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~--C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|..  |++++..+++|..|++.+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            4677755  778888888888887764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.7e-05  Score=33.25  Aligned_cols=25  Identities=28%  Similarity=0.707  Sum_probs=14.5

Q ss_pred             cceeccccCcccCChhhHHHHHhhc
Q psy3356          98 KPYHCTECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        98 ~~~~C~~C~~~~~~~~~l~~H~~~h  122 (180)
                      +|+.|.+||+.|.......+|.+.|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4555666666666555555555554

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2e-05  Score=32.95  Aligned_cols=24  Identities=46%  Similarity=0.754  Sum_probs=19.0

Q ss_pred             eeccccccccCChHHHHHHHHHcC
Q psy3356         128 YECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      |.|+.|+.....++-|+.|++.|+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccccCcccCCHHHHHHHHHHhc
Confidence            678888888888888888888743

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.6e-05  Score=32.11  Aligned_cols=25  Identities=36%  Similarity=0.797  Sum_probs=23.2

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||+|..|.+.-.+.++|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            6899999999999999999999985

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=4e-05  Score=32.13  Aligned_cols=25  Identities=32%  Similarity=0.662  Sum_probs=17.9

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|..|.....+.++|..|+++.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhcc
Confidence            4677777777777777777777763

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=6.3e-05  Score=31.37  Aligned_cols=26  Identities=38%  Similarity=0.615  Sum_probs=14.8

Q ss_pred             eeccccCcccCChhhHHHHHhhcCCC
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTHTGE  125 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h~~~  125 (180)
                      |.|+.|+....-++-|.+|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            45555555555555666666655543

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=7.9e-05  Score=30.87  Aligned_cols=27  Identities=37%  Similarity=0.815  Sum_probs=15.0

Q ss_pred             cceeccccCcccCChhhHHHHHhhcCC
Q psy3356          98 KPYHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        98 ~~~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      +||+|..|.....+.+.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=8.2e-05  Score=31.55  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=14.3

Q ss_pred             ceeccc--cCcccCChhhHHHHHhhcC
Q psy3356          99 PYHCTE--CEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        99 ~~~C~~--C~~~~~~~~~l~~H~~~h~  123 (180)
                      ||.|.+  |++.+...+.|.+|++.++
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhC
Confidence            455554  5566666666666665543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=7.1e-05  Score=31.22  Aligned_cols=23  Identities=30%  Similarity=0.771  Sum_probs=20.0

Q ss_pred             ceeccccccccCChHHHHHHHHH
Q psy3356         127 PYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ||.|..|..+|.+..+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68888899999999999999876

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.35  E-value=7.6e-05  Score=31.96  Aligned_cols=23  Identities=26%  Similarity=0.827  Sum_probs=18.9

Q ss_pred             ceeccccccccCChHHHHHHHHH
Q psy3356         127 PYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ||.|..|++.|..+..|.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            67888888888888888888765

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=8.3e-05  Score=30.64  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=14.0

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ..|.+||+.|...+.|.+|+-.
T Consensus         3 hvc~ecgkaf~essklkrh~lv   24 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLV   24 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGG
T ss_pred             chHHHHhHHHHHHHHHHHHhhc
Confidence            3566666666666666666654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00018  Score=29.64  Aligned_cols=25  Identities=36%  Similarity=0.618  Sum_probs=15.9

Q ss_pred             eeccccCcccCChhhHHHHHhhcCC
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      ..|..||+.|.-.+.|.+|+..|++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            3566666666666666666666654

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00017  Score=33.17  Aligned_cols=25  Identities=44%  Similarity=0.978  Sum_probs=18.4

Q ss_pred             CCCceeccccccccCChHHHHHHHH
Q psy3356         124 GERPYECEICGKRFSQKSACNTHKR  148 (180)
Q Consensus       124 ~~~~~~C~~C~~~f~~~~~l~~H~~  148 (180)
                      |-+||.|..|++.|-...++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4567777777777777777777764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00016  Score=30.03  Aligned_cols=27  Identities=22%  Similarity=0.632  Sum_probs=19.8

Q ss_pred             CCceeccccccccCChHHHHHHHHHcC
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      +..|.|..|...|.....|..|+-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            345778888888888888888877643

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.21  E-value=9.3e-05  Score=29.53  Aligned_cols=23  Identities=43%  Similarity=0.993  Sum_probs=18.7

Q ss_pred             eeccccccccCChHHHHHHHHHc
Q psy3356         128 YECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |+|..|.++|...+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57888888888888888888764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00024  Score=29.57  Aligned_cols=22  Identities=55%  Similarity=1.046  Sum_probs=13.0

Q ss_pred             ceeccccCcccCChhhHHHHHh
Q psy3356          99 PYHCTECEATFSWKQNLEVHMR  120 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~  120 (180)
                      ||.|..|++.|.++.+|..|++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            3556666666666666666654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00024  Score=28.80  Aligned_cols=18  Identities=33%  Similarity=0.554  Sum_probs=6.8

Q ss_pred             cccccccCChHHHHHHHH
Q psy3356         131 EICGKRFSQKSACNTHKR  148 (180)
Q Consensus       131 ~~C~~~f~~~~~l~~H~~  148 (180)
                      +.|.+.|.+..-|..|-+
T Consensus         4 p~c~k~f~skyylkvhnr   21 (27)
T d2dlqa4           4 PTCHKKFLSKYYLKVHNR   21 (27)
T ss_dssp             TTTCCCCSSHHHHHHHHH
T ss_pred             cchHHHHHHhHhhhhccc
Confidence            333333333333333333

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00023  Score=32.23  Aligned_cols=26  Identities=35%  Similarity=0.901  Sum_probs=22.9

Q ss_pred             CCceec--cccccccCChHHHHHHHHHc
Q psy3356         125 ERPYEC--EICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       125 ~~~~~C--~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ++||.|  +.|+..|.+...|..|+..|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            789999  66999999999999998875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00023  Score=28.81  Aligned_cols=26  Identities=46%  Similarity=0.818  Sum_probs=23.9

Q ss_pred             eccccCcccCChhhHHHHHhhcCCCC
Q psy3356         101 HCTECEATFSWKQNLEVHMRTHTGER  126 (180)
Q Consensus       101 ~C~~C~~~~~~~~~l~~H~~~h~~~~  126 (180)
                      +|+.|.+.|.++..|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999998864

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.0004  Score=31.64  Aligned_cols=25  Identities=32%  Similarity=0.759  Sum_probs=20.5

Q ss_pred             CceeccccccccCChHHHHHHHHHc
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +.|+|..|++.|.+...|--|++.|
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CccCCCCCCCccCCcccccchHhhh
Confidence            4588888888888888888888875

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00036  Score=27.76  Aligned_cols=23  Identities=35%  Similarity=0.781  Sum_probs=20.1

Q ss_pred             CceeccccccccCChHHHHHHHH
Q psy3356         126 RPYECEICGKRFSQKSACNTHKR  148 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~  148 (180)
                      .||+|..|...|-....|+.|+-
T Consensus         1 mpykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999974

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00021  Score=28.46  Aligned_cols=23  Identities=35%  Similarity=0.852  Sum_probs=19.5

Q ss_pred             CcccccchhhccChHHHHHHHHh
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRV   88 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~   88 (180)
                      ||+|..|.+.|.++.+|+.|+..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999888753

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00042  Score=31.79  Aligned_cols=26  Identities=31%  Similarity=0.870  Sum_probs=20.3

Q ss_pred             CCcceeccccCcccCChhhHHHHHhh
Q psy3356          96 KDKPYHCTECEATFSWKQNLEVHMRT  121 (180)
Q Consensus        96 ~~~~~~C~~C~~~~~~~~~l~~H~~~  121 (180)
                      |-+||.|..|++.|.+...+.+|...
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            56788888888888888888887653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00069  Score=28.08  Aligned_cols=26  Identities=38%  Similarity=0.880  Sum_probs=12.9

Q ss_pred             ceeccccCcccCChhhHHHHHhhcCC
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~~  124 (180)
                      .+.|..|...|.....|..|+-.|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            34455555555555555555544443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00041  Score=28.41  Aligned_cols=25  Identities=40%  Similarity=0.905  Sum_probs=16.5

Q ss_pred             CCcccccchhhccChHHHHHHHHhc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +||+|..|...-...++|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4666666666666666666666665

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00046  Score=28.82  Aligned_cols=24  Identities=33%  Similarity=0.668  Sum_probs=13.9

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      ||.|..|........+|..|+++.
T Consensus         2 py~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhcc
Confidence            555666665555555666665544

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.72  E-value=0.00067  Score=28.09  Aligned_cols=25  Identities=48%  Similarity=0.885  Sum_probs=16.8

Q ss_pred             Cceecc--ccccccCChHHHHHHHHHc
Q psy3356         126 RPYECE--ICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~--~C~~~f~~~~~l~~H~~~h  150 (180)
                      .||.|+  .|++.|..++.|.+|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            356674  3777777777777776653

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.0011  Score=30.11  Aligned_cols=25  Identities=32%  Similarity=0.804  Sum_probs=15.1

Q ss_pred             CCcccccchhhccChHHHHHHHHhc
Q psy3356          65 RPFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      +.|.|.+|++.|.+...|--|+..|
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CccCCCCCCCccCCcccccchHhhh
Confidence            3456666666666666666666555

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0011  Score=27.61  Aligned_cols=24  Identities=29%  Similarity=0.658  Sum_probs=21.2

Q ss_pred             CceeccccccccCChHHHHHHHHH
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      +||+|..|......+++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            579999999999999999999876

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00074  Score=30.52  Aligned_cols=27  Identities=41%  Similarity=0.954  Sum_probs=19.6

Q ss_pred             CCCCcccc--cchhhccChHHHHHHHHhc
Q psy3356          63 GERPFECD--VCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        63 ~~~~~~C~--~C~~~f~~~~~l~~H~~~~   89 (180)
                      +++||.|.  -|+++|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            36777774  4778888877777777766

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.56  E-value=0.0011  Score=27.40  Aligned_cols=24  Identities=38%  Similarity=0.912  Sum_probs=12.1

Q ss_pred             ceeccc--cCcccCChhhHHHHHhhc
Q psy3356          99 PYHCTE--CEATFSWKQNLEVHMRTH  122 (180)
Q Consensus        99 ~~~C~~--C~~~~~~~~~l~~H~~~h  122 (180)
                      ||.|+.  |++.|...+.|.+|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            444443  555555555555555443

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.51  E-value=0.0012  Score=26.20  Aligned_cols=23  Identities=43%  Similarity=0.793  Sum_probs=14.4

Q ss_pred             eeccccCcccCChhhHHHHHhhc
Q psy3356         100 YHCTECEATFSWKQNLEVHMRTH  122 (180)
Q Consensus       100 ~~C~~C~~~~~~~~~l~~H~~~h  122 (180)
                      |.|..|.+.|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            35666666666666666666655

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.42  E-value=0.0015  Score=27.79  Aligned_cols=25  Identities=28%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             ceeccccCcccCChhhHHHHHhhcC
Q psy3356          99 PYHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        99 ~~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      ||.|.+|++.|.....+.+|.+.-+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            5778888888888888888876433

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0016  Score=26.68  Aligned_cols=24  Identities=38%  Similarity=0.674  Sum_probs=20.4

Q ss_pred             ceeccccccccCChHHHHHHHHHc
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |-+|+.|.++..+...|..|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            457899999999999999998875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0022  Score=26.11  Aligned_cols=23  Identities=35%  Similarity=0.768  Sum_probs=18.8

Q ss_pred             ceeccccccccCChHHHHHHHHH
Q psy3356         127 PYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ||+|..||+.+-...+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            58888899888888888888653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.92  E-value=0.0041  Score=24.70  Aligned_cols=22  Identities=32%  Similarity=0.745  Sum_probs=15.8

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      |.|+.|-+.|....++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5677777777777777777665

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0038  Score=27.15  Aligned_cols=25  Identities=24%  Similarity=0.676  Sum_probs=22.0

Q ss_pred             ceeccccccccCChHHHHHHHHHcC
Q psy3356         127 PYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      .|.|..|++.|..+..+.+|-....
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            5899999999999999999987643

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.011  Score=24.04  Aligned_cols=22  Identities=27%  Similarity=0.611  Sum_probs=15.6

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      |.|+.|.-.....+.|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5677777777777777777665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0063  Score=25.23  Aligned_cols=23  Identities=35%  Similarity=0.717  Sum_probs=14.2

Q ss_pred             CcccccchhhccChHHHHHHHHh
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRV   88 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~   88 (180)
                      ||+|..|+....+.++|..|++.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHH
Confidence            56666666666666666666544

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.45  E-value=0.0034  Score=26.02  Aligned_cols=25  Identities=32%  Similarity=0.704  Sum_probs=15.5

Q ss_pred             Cceecc--ccccccCChHHHHHHHHHc
Q psy3356         126 RPYECE--ICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       126 ~~~~C~--~C~~~f~~~~~l~~H~~~h  150 (180)
                      +||.|.  .|.+.|.+.-.|.+|.-+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~th   27 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTH   27 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhccc
Confidence            356663  3667777777777766553

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0057  Score=25.98  Aligned_cols=22  Identities=45%  Similarity=0.909  Sum_probs=14.8

Q ss_pred             Cceeccc--cccccCChHHHHHHH
Q psy3356         126 RPYECEI--CGKRFSQKSACNTHK  147 (180)
Q Consensus       126 ~~~~C~~--C~~~f~~~~~l~~H~  147 (180)
                      +||.|..  |.+.|...+.-..|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            4666654  777777777777775

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.14  E-value=0.0068  Score=24.05  Aligned_cols=22  Identities=27%  Similarity=0.798  Sum_probs=15.1

Q ss_pred             cccccchhhccChHHHHHHHHh
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRV   88 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~   88 (180)
                      |.|+.|-+.|..+.+|..|++.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5677777777777777777654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0057  Score=24.99  Aligned_cols=23  Identities=30%  Similarity=0.683  Sum_probs=15.6

Q ss_pred             cccccchhhccChHHHHHHHHhc
Q psy3356          67 FECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      -+|+.|.++..++..|..|.++|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            45677777777777777776665

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.00  E-value=0.0066  Score=26.11  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=20.6

Q ss_pred             CCceeccccccccCChHHHHHHHH
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKR  148 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~  148 (180)
                      ...|.|.-||..|.+.+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            345899999999999999999864

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.76  E-value=0.011  Score=24.39  Aligned_cols=20  Identities=45%  Similarity=0.683  Sum_probs=10.8

Q ss_pred             cCcccCChhhHHHHHhhcCC
Q psy3356         105 CEATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus       105 C~~~~~~~~~l~~H~~~h~~  124 (180)
                      |.+.|.+...|.+|..+|++
T Consensus        10 c~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhhhccccC
Confidence            55555555555555555543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.013  Score=23.75  Aligned_cols=22  Identities=45%  Similarity=0.940  Sum_probs=12.5

Q ss_pred             CcccccchhhccChHHHHHHHH
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKR   87 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~   87 (180)
                      ||.|..|++.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4556666666655555555543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.013  Score=27.74  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=22.0

Q ss_pred             CceeccccccccCChHHHHHHHHHcC
Q psy3356         126 RPYECEICGKRFSQKSACNTHKRTHI  151 (180)
Q Consensus       126 ~~~~C~~C~~~f~~~~~l~~H~~~h~  151 (180)
                      ..|.|-.|++.|.....|..|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            34789999999999999999987764

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.45  E-value=0.0077  Score=27.44  Aligned_cols=12  Identities=33%  Similarity=0.957  Sum_probs=8.1

Q ss_pred             CCCCcccCCCcc
Q psy3356         160 KDRPFHCPACEG  171 (180)
Q Consensus       160 ~~~~~~C~~C~~  171 (180)
                      |+.|-.|++|+.
T Consensus        17 g~~P~~CPvCg~   28 (37)
T d1nnqa2          17 DEAPEYCPVCGA   28 (37)
T ss_dssp             SCCCSBCTTTCC
T ss_pred             CCCCCcCCCCCC
Confidence            455667887774

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.04  E-value=0.012  Score=26.62  Aligned_cols=12  Identities=25%  Similarity=0.531  Sum_probs=7.8

Q ss_pred             CCCCcccCCCcc
Q psy3356         160 KDRPFHCPACEG  171 (180)
Q Consensus       160 ~~~~~~C~~C~~  171 (180)
                      |+.|-+|++|+.
T Consensus        17 g~~Pe~CPvCg~   28 (36)
T d1yuza2          17 GEDFEKCPICFR   28 (36)
T ss_dssp             SSCCSBCTTTCC
T ss_pred             CCCCCcCCCCCC
Confidence            455667777774

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.018  Score=23.56  Aligned_cols=18  Identities=44%  Similarity=0.695  Sum_probs=12.3

Q ss_pred             cccccCChHHHHHHHHHc
Q psy3356         133 CGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       133 C~~~f~~~~~l~~H~~~h  150 (180)
                      |++.|.+.+.+..|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            667777777777776654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.02  Score=27.05  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             cceeccccCcccCChhhHHHHHhhcC
Q psy3356          98 KPYHCTECEATFSWKQNLEVHMRTHT  123 (180)
Q Consensus        98 ~~~~C~~C~~~~~~~~~l~~H~~~h~  123 (180)
                      ..+.|-.|+++|.....|.+|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35778899999999999999988774

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.021  Score=29.19  Aligned_cols=37  Identities=16%  Similarity=0.471  Sum_probs=17.0

Q ss_pred             CCcceeccccCcccCChhhHHHHHhhcCCCCceecccccc
Q psy3356          96 KDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGK  135 (180)
Q Consensus        96 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  135 (180)
                      ....|.|+.|++.|.....+.   ........|.|..|+-
T Consensus        11 ~~~~y~Cp~C~~~ys~Lda~~---L~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCC
T ss_pred             cCCceECCCCCCCcchhhHHH---hcCcCCCeEEecCCCC
Confidence            344556666665554333221   1222334455555553

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.066  Score=22.01  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=17.6

Q ss_pred             CcccccchhhccChHHHHHHHHhc
Q psy3356          66 PFECDVCGKRFAQKSTLNTHKRVH   89 (180)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~~   89 (180)
                      .|+|..|++...+...|+-|+...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEeec
Confidence            367778888877777777776654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.25  E-value=0.11  Score=24.33  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=7.2

Q ss_pred             eeccccccccCChHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTH  146 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H  146 (180)
                      -.|+.|+.......+|.+|
T Consensus        25 atcpic~avirqsrnlrrh   43 (54)
T d1yuja_          25 ATCPICYAVIRQSRNLRRH   43 (54)
T ss_dssp             EECTTTCCEESSHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHH
Confidence            3333333333333333333

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.021  Score=29.70  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=17.8

Q ss_pred             ceeccccccccCChHHHHHHHHH
Q psy3356         127 PYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       127 ~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      .|-|..|++.|.+...|..|.++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            37788888888888888888653

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.075  Score=27.06  Aligned_cols=14  Identities=21%  Similarity=0.945  Sum_probs=6.5

Q ss_pred             eeccccccccCChH
Q psy3356         128 YECEICGKRFSQKS  141 (180)
Q Consensus       128 ~~C~~C~~~f~~~~  141 (180)
                      |.|+.|++.|....
T Consensus        15 y~Cp~C~~~ys~Ld   28 (62)
T d1vd4a_          15 FKCPVCSSTFTDLE   28 (62)
T ss_dssp             EECSSSCCEEEHHH
T ss_pred             eECCCCCCCcchhh
Confidence            44444444444433

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.00  E-value=0.071  Score=21.37  Aligned_cols=23  Identities=39%  Similarity=0.868  Sum_probs=17.0

Q ss_pred             eec--cccccccCChHHHHHHHHHc
Q psy3356         128 YEC--EICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       128 ~~C--~~C~~~f~~~~~l~~H~~~h  150 (180)
                      |.|  ..|++.|....+|..|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            445  35888888888888887654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.60  E-value=0.15  Score=23.84  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=26.9

Q ss_pred             CCCcceeccccCcccCChhhHHHHHhhcCCCC
Q psy3356          95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGER  126 (180)
Q Consensus        95 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  126 (180)
                      ..+.|-.|+.|+.+.....+|.+|+..-+-.+
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            46788999999999999999999998655443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.43  E-value=0.15  Score=22.04  Aligned_cols=24  Identities=21%  Similarity=0.571  Sum_probs=12.7

Q ss_pred             CcceeccccCcccCChhhHHHHHh
Q psy3356          97 DKPYHCTECEATFSWKQNLEVHMR  120 (180)
Q Consensus        97 ~~~~~C~~C~~~~~~~~~l~~H~~  120 (180)
                      +..|.|.+|.+++...+++-+|..
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHH
Confidence            344555555555555555555543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=0.07  Score=27.66  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=19.6

Q ss_pred             CCcceeccccCcccCChhhHHHHHhh
Q psy3356          96 KDKPYHCTECEATFSWKQNLEVHMRT  121 (180)
Q Consensus        96 ~~~~~~C~~C~~~~~~~~~l~~H~~~  121 (180)
                      |...|-|..|++.|.+...|..|.++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            44557788888888888888888753

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.095  Score=22.86  Aligned_cols=18  Identities=50%  Similarity=0.667  Sum_probs=10.0

Q ss_pred             cccCChhhHHHHHhhcCC
Q psy3356         107 ATFSWKQNLEVHMRTHTG  124 (180)
Q Consensus       107 ~~~~~~~~l~~H~~~h~~  124 (180)
                      +.|.....|..|++.|++
T Consensus        15 ~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHC
T ss_pred             CcchhHHHHHHHHhhcCC
Confidence            345555555566555554

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.98  E-value=0.23  Score=20.70  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=12.1

Q ss_pred             eecc--ccccccCChHHHHHHHHH
Q psy3356         128 YECE--ICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~--~C~~~f~~~~~l~~H~~~  149 (180)
                      |+|+  .|+..|...-.|..|+-.
T Consensus         4 ~iCsf~dC~A~ynk~wkL~AHLck   27 (31)
T d1tf3a1           4 YICSFADCGAAYNKNWKLQAHLSK   27 (31)
T ss_dssp             EECSSGGGCCEESSHHHHHHHHHH
T ss_pred             eEeeCCCcchhhccchhhhHHhhh
Confidence            5552  355556555556666554

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=0.011  Score=25.44  Aligned_cols=21  Identities=19%  Similarity=0.388  Sum_probs=18.1

Q ss_pred             CCCcccccCCceeeeeecccC
Q psy3356           1 ACSSKWITSPSVTFDINIQKN   21 (180)
Q Consensus         1 ~C~~~f~~~~~~~~~~~~~~~   21 (180)
                      +|+..|.+...|..||..+..
T Consensus         8 ~C~~eFdtQd~LV~HinndHI   28 (32)
T d2glia1           8 GCSQEFDSQEQLVHHINSEHI   28 (32)
T ss_dssp             TCCCBCSCHHHHHHHHHHHTS
T ss_pred             ccccccCCHHHHHHHcccccc
Confidence            699999999999999886654

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.47  Score=20.53  Aligned_cols=25  Identities=24%  Similarity=0.553  Sum_probs=19.4

Q ss_pred             CCceeccccccccCChHHHHHHHHH
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      .+-|.|..|-+-..+...+.+|+..
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHh
Confidence            4568888888888888888888764

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.35  Score=19.65  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=14.9

Q ss_pred             cccccccCChHHHHHHHHHc
Q psy3356         131 EICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       131 ~~C~~~f~~~~~l~~H~~~h  150 (180)
                      +.|++.|..+.-|.-|.+-.
T Consensus         6 ~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHG
T ss_pred             CCchhhhccHHHHHhHHHHH
Confidence            45888888888887777653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.61  E-value=0.48  Score=23.83  Aligned_cols=26  Identities=19%  Similarity=0.627  Sum_probs=20.4

Q ss_pred             CCceeccccccccCChHHHHHHHHHc
Q psy3356         125 ERPYECEICGKRFSQKSACNTHKRTH  150 (180)
Q Consensus       125 ~~~~~C~~C~~~f~~~~~l~~H~~~h  150 (180)
                      ...|.|..|...|.+...|..|+..|
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhc
Confidence            34588888888888888888887765

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.63  E-value=0.54  Score=20.49  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=17.7

Q ss_pred             eccccccccCChHHHHHHHHH
Q psy3356         129 ECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       129 ~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      -|..|...|.....+..|.+-
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk~   30 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHhhCCceehhHHHHHHHHHh
Confidence            588899999999999998763

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=81.55  E-value=0.13  Score=24.08  Aligned_cols=11  Identities=27%  Similarity=0.815  Sum_probs=6.4

Q ss_pred             ceecccccccc
Q psy3356         127 PYECEICGKRF  137 (180)
Q Consensus       127 ~~~C~~C~~~f  137 (180)
                      .|+|..||...
T Consensus         8 ~W~C~~CGyi~   18 (44)
T d1lkoa2           8 KWRCRNCGYVH   18 (44)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEcCCCCcEE
Confidence            35666666554

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.81  E-value=0.37  Score=23.54  Aligned_cols=14  Identities=7%  Similarity=0.245  Sum_probs=9.9

Q ss_pred             cccccccceeeeec
Q psy3356          23 LVFIPACVFRFSVE   36 (180)
Q Consensus        23 ~~~c~~C~~~~~~~   36 (180)
                      .+.|..||..+...
T Consensus         2 ky~C~~CgyiYd~~   15 (53)
T d1brfa_           2 KWVCKICGYIYDED   15 (53)
T ss_dssp             EEEETTTCCEEETT
T ss_pred             ceECCCCCcEECcc
Confidence            35788888888733

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.17  E-value=1.4  Score=19.07  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=16.5

Q ss_pred             eeccccccccCChHHHHHHHHH
Q psy3356         128 YECEICGKRFSQKSACNTHKRT  149 (180)
Q Consensus       128 ~~C~~C~~~f~~~~~l~~H~~~  149 (180)
                      ..|.+|.+.|.+.-++.+|+-.
T Consensus         4 ltclecmrtfkssfsiwrhqve   25 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVE   25 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhe
Confidence            4677788888888777777665