Psyllid ID: psy336

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKILV
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEccccEEEEEcccccEEEEEccccccccEEEEccccccccccccccccccHHHHHHHHHcccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccHHHHHHccccEEEEEEEccccccEEEEEEEEccccEEEEccccEEEEEEEEcccccccEEEEEEEccHHHcccccccccHHHHHHHHHHccccHHHHHHHccccccccEEEc
Coil and Loop (DISEMBL)
MRKHLKNKRLESLKLLGLDriidlqfgtgeaEYHIIVELYdrgnivltdkdyiilnvlrphsdgeevRFYVREKYpvdlakvrsgaptQEMLYELFTKEKYGEQIKKILvpqlgpqakilv
Flexible Loop (DISEMBL)
MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILnvlrphsdgeevRFYVREKYpvdlakvrsgaptQEMLYELFTKEKYGEQIKKilvpqlgpqakilv
Low Complexity Region (SEG)
MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKILV
Disordered region (IsUnstruct)
***********SLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQ*********
Disordered Region (DISOPRED)
MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSD*****F****KYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKILV
Disordered Region (DISEMBL)
********RLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKILV
Disordered Region (DISPRO)
MRK*LKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKILV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKILV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9VBX1	992	Nuclear export mediator f	yes	N/A	0.950	0.115	0.521	4e-30
Q8CCP0	1064	Nuclear export mediator f	yes	N/A	0.950	0.108	0.533	7e-28
O60524	1076	Nuclear export mediator f	yes	N/A	0.950	0.106	0.533	8e-28
Q9USN8	1021	Uncharacterized protein C	yes	N/A	0.644	0.076	0.333	2e-07
Q12532	1038	Translation-associated el	yes	N/A	0.471	0.054	0.406	8e-06

>sp|Q9VBX1|NEMF_DROME Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster GN=Clbn PE=1 SV=2

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 85/117 (72%), Gaps = 2/117 (1%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           +RKHLKNKRLE ++ +G DRI+D QFGTG+A YH+I+ELYDRGN++LTD +   L +LRP
Sbjct: 79  LRKHLKNKRLEKVQQMGSDRIVDFQFGTGDAAYHVILELYDRGNVILTDYELTTLYILRP 138

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
           H++GE +RF +REKYPV+ AK  +     E L +L    + G+ +++IL P L  GP
Sbjct: 139 HTEGENLRFAMREKYPVERAKQPTKELELEALVKLLENARNGDYLRQILTPNLDCGP 195

Plays a role in regulating nuclear transport possibly through directly binding to both emb and cargo proteins.
Drosophila melanogaster (taxid: 7227)

>sp|Q8CCP0|NEMF_MOUSE Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 3/118 (2%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
            RKHLK++RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR 
Sbjct: 78  CRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRF 137

Query: 61  HSD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
            +D  ++V+F VRE+YP+D A+      T E L E+      GE +K++L P L  GP
Sbjct: 138 RTDEADDVKFAVRERYPIDHARAAEPLLTLERLTEVIAAAPKGEVLKRVLNPLLPYGP 195

Plays a role in nuclear export.

Mus musculus (taxid: 10090)

>sp|O60524|NEMF_HUMAN Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 3/118 (2%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
            RKHLK++RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR 
Sbjct: 78  CRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYVILNILRF 137

Query: 61  HSD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
            +D  ++V+F VRE+YP+D A+      T E L E+      GE +K++L P L  GP
Sbjct: 138 RTDEADDVKFAVRERYPLDHARAAEPLLTLERLTEIVASAPKGELLKRVLNPLLPYGP 195

Plays a role in nuclear export.

Homo sapiens (taxid: 9606)

>sp|Q9USN8|YJY1_SCHPO Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC132.01c PE=1 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAE------YHIIVELYDRGNIVLTDKDYII 54
           +RKH+K++RL  +  LG DR++   FG G  +      Y+++ E +  GN++L D  Y I
Sbjct: 77  LRKHIKSRRLTGVSQLGTDRVLVFTFGGGANDQDPDWTYYLVCEFFAAGNVLLLDGHYKI 136

Query: 55  LNVLRPHSDGEEVRFYVREKYPVD 78
           L++LR  +  ++  + V +KY +D
Sbjct: 137 LSLLRVVTFDKDQVYAVGQKYNLD 160

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12532|TAE2_YEAST Translation-associated element 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAE2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
           +RKHLK KRL +LK +  DRI+ LQF  G   +++++E +  GN++L D++  I+ + R
Sbjct: 80  LRKHLKAKRLTALKQVDQDRILVLQFADG--HFYLVLEFFSAGNVILLDENRRIMALQR 136

Involved in protein biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
357620683	1001	hypothetical protein KGM_20428 [Danaus p	0.991	0.119	0.608	2e-35
157116544	995	hypothetical protein AaeL_AAEL007639 [Ae	0.991	0.120	0.6	4e-34
347968346	1053	AGAP002680-PA [Anopheles gambiae str. PE	0.917	0.105	0.630	7e-34
242018711	1024	Serologically defined colon cancer antig	0.950	0.112	0.581	2e-33
189239405	972	PREDICTED: similar to CG11847 CG11847-PA	0.942	0.117	0.598	3e-33
170055538	995	serologically defined colon cancer antig	0.933	0.113	0.619	7e-33
307209071	989	Serologically defined colon cancer antig	0.925	0.113	0.619	7e-33
383852746	970	PREDICTED: nuclear export mediator facto	0.925	0.115	0.610	2e-32
340713692	971	PREDICTED: nuclear export mediator facto	0.925	0.115	0.592	9e-32
350409527	971	PREDICTED: nuclear export mediator facto	0.909	0.113	0.594	1e-31

>gi|357620683|gb|EHJ72794.1| hypothetical protein KGM_20428 [Danaus plexippus]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 92/120 (76%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           +RKHLKNKRLE L  LG+DRI++LQFG+GEA YH+I+ELYDRGNIVLTD ++ ILNVLRP
Sbjct: 77  LRKHLKNKRLEKLSQLGIDRIVELQFGSGEAAYHVILELYDRGNIVLTDCEWTILNVLRP 136

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKIL 120
           H +G++VRF V+EKYP+D AK    AP +  L E+  K K G+ +KKIL P L   A I+
Sbjct: 137 HVEGDKVRFAVKEKYPLDRAKTDYAAPNEGALKEILGKSKPGDNLKKILNPNLEYGASII 196

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116544|ref|XP_001658543.1| hypothetical protein AaeL_AAEL007639 [Aedes aegypti] gi|108876416|gb|EAT40641.1| AAEL007639-PA [Aedes aegypti]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 87/120 (72%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           +RKHLKNKRLES+K LG+DRI+D QFGTGEA YH+I+ELYDRGNI+LTD D  ILN+LRP
Sbjct: 78  LRKHLKNKRLESMKQLGVDRIVDFQFGTGEAAYHVILELYDRGNILLTDCDLKILNILRP 137

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKIL 120
           H +GEEVRF VREKYP D AK   G P  E + E   K   G+ ++  L P L   A ++
Sbjct: 138 HVEGEEVRFAVREKYPTDRAKEDKGPPAMEKVKETIAKAHPGDTLRTALNPILEYGASVI 197

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968346|ref|XP_312244.5| AGAP002680-PA [Anopheles gambiae str. PEST] gi|333468048|gb|EAA08148.6| AGAP002680-PA [Anopheles gambiae str. PEST]

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 86/111 (77%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           MRKHLKNKRLESL+ LG+DRI+D QFGTGEA YHII+ELYDRGNI+LTD +  ILN+LRP
Sbjct: 78  MRKHLKNKRLESLQQLGVDRIVDFQFGTGEAAYHIILELYDRGNILLTDCELRILNILRP 137

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVP 111
           H +GEE+RF VREKYP D AK  +G P+ E + E   K + G+ ++  L P
Sbjct: 138 HVEGEELRFAVREKYPKDRAKQDNGPPSMEQIKEAIQKAQPGDTLRTALNP 188

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018711|ref|XP_002429817.1| Serologically defined colon cancer antigen, putative [Pediculus humanus corporis] gi|212514835|gb|EEB17079.1| Serologically defined colon cancer antigen, putative [Pediculus humanus corporis]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           +RKHL+NKRLESLK LG DRI+ LQFGTG+A YH+ +ELYD+GNIVLTD D IILN+LRP
Sbjct: 77  LRKHLRNKRLESLKQLGFDRIVHLQFGTGDAAYHVFLELYDKGNIVLTDCDLIILNILRP 136

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
           H++G+++RF VREKYP++ A+     PT+E +  +F   K  + +KKIL   L  GP
Sbjct: 137 HTEGDKIRFAVREKYPINRARDVCNFPTEEQIKNIFASAKSNDNLKKILNFNLDYGP 193

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239405|ref|XP_001813943.1| PREDICTED: similar to CG11847 CG11847-PA [Tribolium castaneum] gi|270010510|gb|EFA06958.1| hypothetical protein TcasGA2_TC009916 [Tribolium castaneum]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 91/117 (77%), Gaps = 3/117 (2%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           +RKHLKNKRLESL  LG DRI+D QFG+GEA YH+I+ELYD+GNI+LTD ++ ILNVLRP
Sbjct: 77  LRKHLKNKRLESLAQLGTDRIVDFQFGSGEAAYHVILELYDKGNIILTDFEFTILNVLRP 136

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
           H++G+  +F VREKYP D A+ +S   T++ L +L    K G+Q+KK+LVP L  GP
Sbjct: 137 HTEGDRFKFVVREKYPQDRAR-QSSLITRDELVQLLKAAKNGDQLKKVLVPNLEYGP 192

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055538|ref|XP_001863626.1| serologically defined colon cancer antigen 1 [Culex quinquefasciatus] gi|167875449|gb|EDS38832.1| serologically defined colon cancer antigen 1 [Culex quinquefasciatus]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 84/113 (74%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           MRKHLKNKRLESL+ LG+DRI+D QFG+GEA YHII+ELYDRGNI+LTD +  ILN+LRP
Sbjct: 78  MRKHLKNKRLESLRQLGVDRIVDFQFGSGEAAYHIILELYDRGNILLTDCELKILNILRP 137

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL 113
           H +GEE+RF VREKYP D AK   G P  E + E   K   G+ ++  L P L
Sbjct: 138 HVEGEELRFAVREKYPEDRAKQDRGPPPMEKVRETIAKANPGDTLRTALNPIL 190

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209071|gb|EFN86238.1| Serologically defined colon cancer antigen 1-like protein [Harpegnathos saltator]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 89/113 (78%), Gaps = 1/113 (0%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           MRKHLKNKRLESL  +G+DRIIDLQFG+GEA YHII+ELYDRGNI+LTD + +IL +LRP
Sbjct: 77  MRKHLKNKRLESLMQVGIDRIIDLQFGSGEAAYHIILELYDRGNIILTDHEMVILYILRP 136

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL 113
           H++G+++RF VREKYP+D A   +  P  E ++E   K K GE +KK+L P L
Sbjct: 137 HTEGDKIRFAVREKYPLDRAHNEAMPPIDE-IHEHLQKAKTGESLKKVLNPIL 188

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852746|ref|XP_003701886.1| PREDICTED: nuclear export mediator factor NEMF homolog [Megachile rotundata]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           MRKHLKNKRLESL  +G+DRIIDLQFG+GEA YH+I+ELYDRGNIVLTD +  ILN+LRP
Sbjct: 77  MRKHLKNKRLESLTQVGVDRIIDLQFGSGEAAYHVILELYDRGNIVLTDHEMTILNILRP 136

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL 113
           H++G+++RF V++KYP+D A   +  P +E+   L    K GE +KKIL P L
Sbjct: 137 HTEGDKIRFAVKQKYPMDRAHQNTMPPIEEIQNHL-QNAKAGESLKKILNPLL 188

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713692|ref|XP_003395373.1| PREDICTED: nuclear export mediator factor NEMF homolog [Bombus terrestris]

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           MRKHLKNKRLESL  +G+DR+IDLQFG+GEA YH+I+ELYDRGNIVLTD +  ILN+LRP
Sbjct: 77  MRKHLKNKRLESLTQIGIDRMIDLQFGSGEAAYHVILELYDRGNIVLTDHEMTILNILRP 136

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL 113
           H++G+++RF V+EKYP+D A   +  P  E + +     K GE +KK+L P L
Sbjct: 137 HTEGDKIRFAVKEKYPMDRAHQNTMPPI-ENIQQHLQNAKAGESLKKLLNPLL 188

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409527|ref|XP_003488770.1| PREDICTED: nuclear export mediator factor NEMF homolog [Bombus impatiens]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
           MRKHLKNKRLESL  +G+DR+IDLQFG+GEA YH+I+ELYDRGNIVLTD +  ILN+LRP
Sbjct: 77  MRKHLKNKRLESLTQIGVDRMIDLQFGSGEAAYHVILELYDRGNIVLTDHEMTILNILRP 136

Query: 61  HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVP 111
           H++G+++RF V+EKYP+D A   +  P  E + +     K GE +KK+L P
Sbjct: 137 HTEGDKIRFAVKEKYPMDRAHQNTMPPI-ENIQQHLQSAKAGESLKKLLNP 186

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
UNIPROTKB|F1NTG2	190	NEMF "Uncharacterized protein"	0.909	0.578	0.576	2.3e-30
UNIPROTKB|F1N8T0	1071	NEMF "Uncharacterized protein"	0.983	0.111	0.553	9.9e-30
FB|FBgn0259152	992	Clbn "Caliban" [Drosophila mel	0.950	0.115	0.521	5.7e-28
UNIPROTKB|F1SHY2	1078	NEMF "Uncharacterized protein"	0.942	0.105	0.547	1.3e-26
MGI|MGI:1918305	1064	Nemf "nuclear export mediator	0.942	0.107	0.538	2e-26
UNIPROTKB|O60524	1076	NEMF "Nuclear export mediator	0.942	0.105	0.538	2e-26
UNIPROTKB|F1MKA1	1079	NEMF "Uncharacterized protein"	0.942	0.105	0.538	2.1e-26
ZFIN|ZDB-GENE-060929-284	883	zgc:153813 "zgc:153813" [Danio	0.925	0.126	0.486	6.9e-24
DICTYBASE|DDB_G0289583	1268	DDB_G0289583 "DUF814 family pr	0.942	0.089	0.425	1.9e-17
WB|WBGene00022350	921	Y82E9BR.18 [Caenorhabditis ele	0.752	0.098	0.473	4.8e-16

UNIPROTKB|F1NTG2 NEMF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/111 (57%), Positives = 85/111 (76%)

Query:     2 RKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPH 61
             RKHLK +RL S++ LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR  
Sbjct:    79 RKHLKTRRLVSVRQLGIDRIVDFQFGSNEAAYHLIIELYDRGNIVLTDHEYLILNILRFR 138

Query:    62 SD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVP 111
             +D  ++VRF VRE+YPVD AK  +  PT E L E+ +    GEQ+K++L P
Sbjct:   139 TDEADDVRFAVRERYPVDSAKAPTPLPTLERLTEIISNAPKGEQLKRVLNP 189

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051168 "nuclear export" evidence=IEA

UNIPROTKB|F1N8T0 NEMF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 341 (125.1 bits), Expect = 9.9e-30, P = 9.9e-30
 Identities = 67/121 (55%), Positives = 89/121 (73%)

Query:     2 RKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPH 61
             RKHLK +RL S++ LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR  
Sbjct:    79 RKHLKTRRLVSVRQLGIDRIVDFQFGSNEAAYHLIIELYDRGNIVLTDHEYLILNILRFR 138

Query:    62 SD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKIL 120
             +D  ++VRF VRE+YPVD AK  +  PT E L E+ +    GEQ+K++L P L P    L
Sbjct:   139 TDEADDVRFAVRERYPVDSAKAPTPLPTLERLTEIISNAPKGEQLKRVLNPHL-PYGATL 197

Query:   121 V 121
             +
Sbjct:   198 I 198

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051168 "nuclear export" evidence=IEA

FB|FBgn0259152 Clbn "Caliban" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 5.7e-28, P = 5.7e-28
 Identities = 61/117 (52%), Positives = 85/117 (72%)

Query:     1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
             +RKHLKNKRLE ++ +G DRI+D QFGTG+A YH+I+ELYDRGN++LTD +   L +LRP
Sbjct:    79 LRKHLKNKRLEKVQQMGSDRIVDFQFGTGDAAYHVILELYDRGNVILTDYELTTLYILRP 138

Query:    61 HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
             H++GE +RF +REKYPV+ AK  +     E L +L    + G+ +++IL P L  GP
Sbjct:   139 HTEGENLRFAMREKYPVERAKQPTKELELEALVKLLENARNGDYLRQILTPNLDCGP 195

GO:0006611 "protein export from nucleus" evidence=IMP

UNIPROTKB|F1SHY2 NEMF "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 64/117 (54%), Positives = 83/117 (70%)

Query:     2 RKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPH 61
             RKHLK +RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR  
Sbjct:    79 RKHLKGRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFR 138

Query:    62 SD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
             +D  ++V+F VRE+YPVD A+      T E L E+      GE +K++L P L  GP
Sbjct:   139 TDESDDVKFAVRERYPVDHARAAEPLLTLERLTEIIASAPKGELLKRVLNPLLPYGP 195

GO:0051168 "nuclear export" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1918305 Nemf "nuclear export mediator factor" [Mus musculus (taxid:10090)]

 Score = 310 (114.2 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 63/117 (53%), Positives = 84/117 (71%)

Query:     2 RKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPH 61
             RKHLK++RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR  
Sbjct:    79 RKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFR 138

Query:    62 SD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
             +D  ++V+F VRE+YP+D A+      T E L E+      GE +K++L P L  GP
Sbjct:   139 TDEADDVKFAVRERYPIDHARAAEPLLTLERLTEVIAAAPKGEVLKRVLNPLLPYGP 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0051168 "nuclear export" evidence=ISO

UNIPROTKB|O60524 NEMF "Nuclear export mediator factor NEMF" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 63/117 (53%), Positives = 84/117 (71%)

Query:     2 RKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPH 61
             RKHLK++RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR  
Sbjct:    79 RKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYVILNILRFR 138

Query:    62 SD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
             +D  ++V+F VRE+YP+D A+      T E L E+      GE +K++L P L  GP
Sbjct:   139 TDEADDVKFAVRERYPLDHARAAEPLLTLERLTEIVASAPKGELLKRVLNPLLPYGP 195

GO:0051168 "nuclear export" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MKA1 NEMF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 310 (114.2 bits), Expect = 2.1e-26, P = 2.1e-26
 Identities = 63/117 (53%), Positives = 84/117 (71%)

Query:     2 RKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPH 61
             RKHLK++RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR  
Sbjct:    79 RKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFR 138

Query:    62 SD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
             +D  ++V+F VRE+YP+D A+      T E L E+      GE +K++L P L  GP
Sbjct:   139 TDESDDVKFAVRERYPIDHARAAEPLLTLERLTEILAGAPKGELLKRVLNPLLPYGP 195

GO:0051168 "nuclear export" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-060929-284 zgc:153813 "zgc:153813" [Danio rerio (taxid:7955)]

 Score = 285 (105.4 bits), Expect = 6.9e-24, P = 6.9e-24
 Identities = 55/113 (48%), Positives = 84/113 (74%)

Query:     2 RKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPH 61
             RKHLK++RL  ++ LG+DRI+DLQFG+ EA YH+I+ELYDRGNI+LTD  ++ILN+LR  
Sbjct:    79 RKHLKSRRLVHVRQLGVDRIVDLQFGSDEAAYHLILELYDRGNIILTDHQFMILNLLRFR 138

Query:    62 S-DGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL 113
             + + E+V+  VRE+YPV+ A+      + + L ++ +  + G+Q+K+IL P L
Sbjct:   139 TAEAEDVKIAVRERYPVENARAEEPIISLQRLTQVLSGAQTGDQLKRILNPHL 191

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0289583 DDB_G0289583 "DUF814 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 227 (85.0 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 51/120 (42%), Positives = 77/120 (64%)

Query:     1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
             +RK+LK KRLES+K LG+DR++D  FG+G A  H+IVELY  GNI+LTD +Y IL +LR 
Sbjct:    79 LRKYLKTKRLESVKQLGVDRVVDFTFGSGVAVQHLIVELYSIGNIILTDGEYRILAILRT 138

Query:    61 HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELF--TKEKYGEQIKKILVPQL--GPQ 116
             H   ++    V + YP+D  KV +   T+ ++ ++   T +K  E +K++    L  GP+
Sbjct:   139 HQYNQDESVAVGDVYPIDKVKVPTEF-TESLIDQIIENTVDKK-ETLKQVFNKSLDFGPE 196

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00022350 Y82E9BR.18 [Caenorhabditis elegans (taxid:6239)]

 Score = 212 (79.7 bits), Expect = 4.8e-16, P = 4.8e-16
 Identities = 44/93 (47%), Positives = 64/93 (68%)

Query:     1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
             +RKH+  KRL S++++G DR+++L FGT + E  + VELYDRGN+VLTD++  ILN+LR 
Sbjct:    77 LRKHINQKRLTSIRVVGFDRLVELTFGTEDRENRLYVELYDRGNVVLTDQELTILNILRV 136

Query:    61 HSDGE-EVRFYVREKYPVDLAKVRSGAPTQEML 92
              +D +  VR+ VREK+     +  S A T E L
Sbjct:   137 RTDKDTSVRWAVREKFTFSDDE-NSAAKTGEKL 168

GO:0005525 "GTP binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O60524	NEMF_HUMAN	No assigned EC number	0.5338	0.9504	0.1068	yes	N/A
Q8CCP0	NEMF_MOUSE	No assigned EC number	0.5338	0.9504	0.1080	yes	N/A
Q9VBX1	NEMF_DROME	No assigned EC number	0.5213	0.9504	0.1159	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	1e-11
pfam05833	447	pfam05833, FbpA, Fibronectin-binding protein A N-t	6e-11

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDR-----GNIVLTDKDYIIL 55
           +RKHLK  R+E ++ LG DRI++L+F   E    IIVEL+       GN++L D++  I+
Sbjct: 81  LRKHLKGARIEKIEQLGFDRILELKFKKDEIGDKIIVELFLEIMGKHGNLILVDEERKII 140

Query: 56  NVLRP 60
             LR 
Sbjct: 141 EALRH 145

Length = 564

>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTG---EAEYHIIVELYDR-GNIVLTDKDYIILN 56
           +RKHL+  R+  ++ +G DRI++ +F      E EY +IVEL  R  NI+L D++  I++
Sbjct: 76  LRKHLEGGRIVDIEQIGFDRIVEFEFEKRDGDEIEYTLIVELMGRHSNIILVDENNKIID 135

Query: 57  VLR 59
            ++
Sbjct: 136 AIK 138

This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host. Length = 447

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PF05833	455	FbpA: Fibronectin-binding protein A N-terminus (Fb	99.94
COG1293	564	Predicted RNA-binding protein homologous to eukary	99.89
KOG2030|consensus	911		99.56

>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO

Probab=99.94  E-value=1.3e-27  Score=196.90  Aligned_cols=117  Identities=34%  Similarity=0.497  Sum_probs=81.5

Q ss_pred             CccccCCCceeEEEecCCCeEEEEEEccC-----CceEEEEEEeccC-ceEEEEcCCCcEEEeeccccCC----cceeec
Q psy336            1 MRKHLKNKRLESLKLLGLDRIIDLQFGTG-----EAEYHIIVELYDR-GNIVLTDKDYIILNVLRPHSDG----EEVRFY   70 (121)
Q Consensus         1 LRk~l~g~ri~~i~Q~~~DRIv~~~f~~~-----~~~~~L~~El~g~-~Niil~d~~~~Il~~lr~~~~~----~~v~~g   70 (121)
                      |||||+|++|++|+|+|+||||.|+|+++     ...++|++||||+ ||+||||++++|++|++++..+    |.+.+|
T Consensus        76 Lrk~l~g~~i~~i~q~~~dRii~~~~~~~~~~~~~~~~~Li~El~g~~~NiiL~d~~~~Il~a~~~~~~~~~~~R~i~~G  155 (455)
T PF05833_consen   76 LRKHLRGARIVSIEQLGFDRIIEIEFESGDELGDDEKYRLIIELMGRHSNIILTDEDGKILDALRRVSFSQSRDREILPG  155 (455)
T ss_dssp             HHHHHTT-EEEEEEESTTSSEEEEEEEEE-TTS-EEEEEEEEE--GGG-EEEEEETT-BEEEESS-B---------BSTT
T ss_pred             HHHHhCCCEEEEEEEcCCcEEEEEEeeccCcCCCceeEEEEEEEcCCcccEEEEcCCCeEEeehhhcCcccccceeeccC
Confidence            79999999999999999999999999998     4699999999999 9999999999999999999844    466777


Q ss_pred             ccccCCCCcccCCCCCCCH-HHHHHHHHhccCchhhHhhhhccC-CCCCcc
Q psy336           71 VREKYPVDLAKVRSGAPTQ-EMLYELFTKEKYGEQIKKILVPQL-GPQAKI  119 (121)
Q Consensus        71 ~~~~yp~~~~~~~~~~~~~-e~~~~~l~~~~~~~~l~~~L~~~l-glg~~~  119 (121)
                      ..|.+||++.+.+|.+.+. ++|.+.++.  ++.+++++|...+ ||||.+
T Consensus       156 ~~Y~~Pp~~~~~~p~~~~~~~~~~~~l~~--~~~~l~~~L~~~~~G~~~~l  204 (455)
T PF05833_consen  156 EPYIPPPPQDKLDPLDLEEFEEFIELLKK--KEKTLVKALSKNFQGFGPEL  204 (455)
T ss_dssp             SB---------B-CCC--H-HHHHHHHHC--CG-BHHHHHHHHCTT--HHH
T ss_pred             ccccccccccCCCcccchhHHHHHHhhcc--CcccHHHHHHHHHHHhHHHH
Confidence            7777777767889988776 778888876  3578999998877 999875

Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.

>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

Probab=99.89  E-value=1.5e-23  Score=178.59  Aligned_cols=115  Identities=28%  Similarity=0.439  Sum_probs=101.6

Q ss_pred             CccccCCCceeEEEecCCCeEEEEEEccC-----CceEEEEEEeccC-ceEEEEcCCCcEEEeeccccCC-cceeecccc
Q psy336            1 MRKHLKNKRLESLKLLGLDRIIDLQFGTG-----EAEYHIIVELYDR-GNIVLTDKDYIILNVLRPHSDG-EEVRFYVRE   73 (121)
Q Consensus         1 LRk~l~g~ri~~i~Q~~~DRIv~~~f~~~-----~~~~~L~~El~g~-~Niil~d~~~~Il~~lr~~~~~-~~v~~g~~~   73 (121)
                      |||||+|++|++|+|+||||||.|+|+ +     ...+.|++|+||+ ||+||||++++|++++|+++.+ |++.+|..|
T Consensus        81 LRK~l~g~~i~~i~Q~~~DRIl~~~f~-~~~~~~~~~~eL~~ei~g~~gNiil~d~~~~Ii~~~r~v~~~~R~i~pG~~Y  159 (564)
T COG1293          81 LRKHLKGARIEKIEQLGFDRILELKFK-KDEIGDKIIVELFLEIMGKHGNLILVDEERKIIEALRHVTFSDRTIKPGEIY  159 (564)
T ss_pred             HHHHhccCceEeEEecCCceEEEEEEe-ccCCCCceeeeeehhhccccceEEEEcCCCeeeeeeeeccccceeecCCCcc
Confidence            799999999999999999999999998 3     2478899999999 9999999999999999999955 788999888


Q ss_pred             cCCCCcccCCCCCCCHHHHHHHHHhccCchhhHhhhhccCCCCCcc
Q psy336           74 KYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQLGPQAKI  119 (121)
Q Consensus        74 ~yp~~~~~~~~~~~~~e~~~~~l~~~~~~~~l~~~L~~~lglg~~~  119 (121)
                      .+||...+ +|.+.+.+++.++....  +..+++++++.+|+||.+
T Consensus       160 ~~Pp~~~~-~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~  202 (564)
T COG1293         160 ILPPAQLK-NPYEQSEEDFKELQLNS--GADIVRLLARFLGLGGLL  202 (564)
T ss_pred             cCCcccCC-ChhhcChHHHHHHHhcc--chHHHHHHHHhcCCCHHH
Confidence            88988877 89998888877766653  678899999999999864

>KOG2030|consensus

Probab=99.56  E-value=2.6e-15  Score=130.59  Aligned_cols=120  Identities=35%  Similarity=0.566  Sum_probs=95.9

Q ss_pred             CccccCCCceeEEEecCCCeEEEEEEccCCceEEEEEEeccCceEEEEcCCCcEEEeeccccCC-cceeecccccCCCCc
Q psy336            1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDG-EEVRFYVREKYPVDL   79 (121)
Q Consensus         1 LRk~l~g~ri~~i~Q~~~DRIv~~~f~~~~~~~~L~~El~g~~Niil~d~~~~Il~~lr~~~~~-~~v~~g~~~~yp~~~   79 (121)
                      |||||+..|+++|.|+|+|||+.|+|+.++..+++++|||.+||+||+|++.+|+..+|.+..+ ......+.+.||...
T Consensus        74 LRKhik~kRledv~Q~g~DRivvlqfG~g~~~~~lvLE~~d~GNviLtdqe~~i~~llrv~~dd~~~~~~~~rer~~~s~  153 (911)
T KOG2030|consen   74 LRKHIKEKRLEDVRQVGFDRIVVLQFGTGDDEGYLVLEFFDRGNVLLTDQELRILQLLRVRTDDSESSRSASRERFDFSA  153 (911)
T ss_pred             HHHHHhHhhhchhhhcCcceEEEEEecCCCccceEEEEecCCCceEEecccceeeeEEeeeeccccchhhhhhhhcchhh
Confidence            7999999999999999999999999999999999999999999999999999999999888844 344455677787754


Q ss_pred             ccCC----CCCCCHH-HHHHHHHhccCchhhHhhhhccCCCCCccc
Q psy336           80 AKVR----SGAPTQE-MLYELFTKEKYGEQIKKILVPQLGPQAKIL  120 (121)
Q Consensus        80 ~~~~----~~~~~~e-~~~~~l~~~~~~~~l~~~L~~~lglg~~~~  120 (121)
                      ...+    -..+..+ ++.+++...+.+.++.++|...++.|++.+
T Consensus       154 ~e~~~~k~~~~le~s~dlk~~~~~~q~g~~~~~il~~~~~~g~sk~  199 (911)
T KOG2030|consen  154 KERNEMKSVKKLEKSGDLKALEPKDQNGITLESILHIETKEGPSKI  199 (911)
T ss_pred             hhhhhccccchhhhcchHHHhhccCccccchhhhhhhhccCCCccc
Confidence            2111    1112333 677777766666688899998999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
3doa_A	288	Fibrinogen binding protein; structural genomics, M	2e-10

>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} Length = 288

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGE-----AEYHIIVELYDR-GNIVLTDKDYII 54
            RKHL+   +ES+K +G DR I++   + +         +I+E+  +  N++L D++  I
Sbjct: 78  FRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKI 137

Query: 55  LNVLRPHSDGEE--VRFYVREKY--PVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILV 110
           +   +  +              Y  P    K+     T   + +    +     I K L+
Sbjct: 138 IEGFKHLTPNTNHYRTVMPGFNYEAPPTQHKINPYDITGAEVLKYI--DFNAGNIAKQLL 195

Query: 111 PQL 113
            Q 
Sbjct: 196 NQF 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3doa_A	288	Fibrinogen binding protein; structural genomics, M	99.96

>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}

Probab=99.96  E-value=7.7e-30  Score=200.39  Aligned_cols=117  Identities=23%  Similarity=0.320  Sum_probs=101.3

Q ss_pred             CccccCCCceeEEEecCCCeEEEEEEccCCc-----eEEEEEEeccC-ceEEEEcCCCcEEEeeccccCC----cceeec
Q psy336            1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEA-----EYHIIVELYDR-GNIVLTDKDYIILNVLRPHSDG----EEVRFY   70 (121)
Q Consensus         1 LRk~l~g~ri~~i~Q~~~DRIv~~~f~~~~~-----~~~L~~El~g~-~Niil~d~~~~Il~~lr~~~~~----~~v~~g   70 (121)
                      |||||+|++|++|+|+|+||||.|+|+++++     .++|++||||+ ||+||||++++||+++|+++.+    |.+.||
T Consensus        78 LRk~L~g~ri~~i~Q~~~DRIv~~~f~~~~e~g~~~~~~Li~El~gr~SNiIL~d~~~~Il~~lr~v~~~~~~~R~i~pG  157 (288)
T 3doa_A           78 FRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTPNTNHYRTVMPG  157 (288)
T ss_dssp             HHHHHTTCEEEEEEESTTSSEEEEEEEEECTTSCEEEEEEEEECCGGGCEEEEEETTCBEEEESSCBCC-----CCBSTT
T ss_pred             HHHHhCCCEEEEEEECCCceEEEEEEeeccccCCccceEEEEEEcCCCceEEEEcCCCcEeeeeeccCccccccceecCC
Confidence            7999999999999999999999999999753     79999999999 7999999999999999999643    466788


Q ss_pred             ccccCCCCcccCCCCCCCHHHHHHHHHhccCchhhHhhhhccC-CCCCcc
Q psy336           71 VREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL-GPQAKI  119 (121)
Q Consensus        71 ~~~~yp~~~~~~~~~~~~~e~~~~~l~~~~~~~~l~~~L~~~l-glg~~~  119 (121)
                      ..|.+||++.+.+|.+.+.++|.+.+...  ..+++++|++.+ |+||.+
T Consensus       158 ~~Y~~Pp~~~k~~p~~~~~e~~~~~l~~~--~~~l~~~l~~~~~G~s~~l  205 (288)
T 3doa_A          158 FNYEAPPTQHKINPYDITGAEVLKYIDFN--AGNIAKQLLNQFEGFSPLI  205 (288)
T ss_dssp             SBCCCCCCCCCBCGGGCCHHHHGGGCCGG--GCCHHHHHHHHBTTCCHHH
T ss_pred             CcccCCccccCCCcccCCHHHHHHHHhhC--cchHHHHHHHHcCCCCHHH
Confidence            77777888788899999999998887653  246889997776 999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00