Psyllid ID: psy3377

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGISPTDH
ccccccccccccccEEEEEcccccEEccccccccccEEEcccEEEEccccccccccccccccccccccccccccccEEEEccccccccccEEEEccccccccccHHHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHcccccEEEEEcccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccEEEcccccEEEEcccccccccccccccccccccccccccccc
ccccccEcccccccEEEEEcccccEEcccccccccccEcccEccccccccEEEcccccccccccccccEEEccccccccccHHHHHcccEEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccEEcccccEEEEcccccccHHHHccccHccccccccHHHHHHHHccccccccHHHHHccccccccccccc
msaggilyggdeIGALVFDVGSqslrvgyaqedspkaeipavvgvvedggqtasidtpmdvdvkpdtnnvtasgnkyfidtNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIesgseyhpvlmseapwniRSKREKLLELMFEKynvpafflVKNAVLAAFANGratglvfdsgathtsaipvhdgyVLTHAIaksplggdylTMQCKQFLqennidiippymvggkeaikdkeppkwtrkknlpevtqSWHNYSVKKVVQDFQQSVLqvsetpfdeksilnlppshyefpngyhqdfgcralpysrgsvvqnianmqpgsgisptdh
MSAGGILYGGDEIGALVFDVGSQSLRVGyaqedspkaeIPAVVGVVEDGGQtasidtpmdvdvkpdtnnvtasgnkyfidtnALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIkdkeppkwtrkknlPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIAnmqpgsgisptdh
MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGISPTDH
****GILYGGDEIGALVFDVGSQSLRVGYA********IPAVVGVVE*********************NVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEA****************EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQ****************
*****ILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDG**********************ASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPF********P*SHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPG********
MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGISPTDH
*******YGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQ**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGISPTDH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
Q9Z2N8 429 Actin-like protein 6A OS= yes N/A 0.907 0.710 0.566 1e-105
O96019 429 Actin-like protein 6A OS= yes N/A 0.907 0.710 0.562 1e-104
Q4R333 429 Actin-like protein 6A OS= N/A N/A 0.907 0.710 0.559 1e-104
O94805 426 Actin-like protein 6B OS= no N/A 0.904 0.713 0.556 1e-102
P86173 426 Actin-like protein 6B OS= no N/A 0.904 0.713 0.556 1e-101
Q99MR0 426 Actin-like protein 6B OS= no N/A 0.904 0.713 0.556 1e-101
A4FUX8 426 Actin-like protein 6B OS= no N/A 0.904 0.713 0.556 1e-101
Q84M92 441 Actin-related protein 4 O yes N/A 0.946 0.721 0.370 1e-60
Q6ZJW9 443 Actin-related protein 4 O yes N/A 0.860 0.652 0.391 1e-55
A2YR10 443 Actin-related protein 4 O N/A N/A 0.860 0.652 0.391 1e-55
>sp|Q9Z2N8|ACL6A_MOUSE Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2 Back     alignment and function desciption
 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/318 (56%), Positives = 226/318 (71%), Gaps = 13/318 (4%)

Query: 1   MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVV--EDGGQTASIDTP 58
           MS G  +YGGDE+GALVFD+GS ++R GYA ED PK + P  +GVV   D G T      
Sbjct: 1   MSGG--VYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTM----- 53

Query: 59  MDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSK 118
           M++D     +     G  Y+IDTNAL V R+ ME  S +K GM+EDWD F+ +LD+TY  
Sbjct: 54  MEID----GDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKM 109

Query: 119 CIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLV 178
            ++S +  HPVLMSEAPWN R+KREKL ELMFE Y++PAFFL K AVL AFANGR+TGL+
Sbjct: 110 HVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLI 169

Query: 179 FDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAI 238
            DSGATHT+AIPVHDGYVL   I KSPL GD++TMQC++  QE NI++IPPYM+  KEA+
Sbjct: 170 LDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELIPPYMIASKEAV 229

Query: 239 KDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEF 298
           ++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    +P  HYEF
Sbjct: 230 REGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEF 289

Query: 299 PNGYHQDFGCRALPYSRG 316
           PNGY+ DFG   L    G
Sbjct: 290 PNGYNCDFGAERLKIPEG 307
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for maximal ATPase activity of SMARCA4/BRG1/BAF190A and for association of the SMARCA4/BRG1/BAF190A containing remodeling complex BAF with chromatin/nuclear matrix. Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
Mus musculus (taxid: 10090)
>sp|O96019|ACL6A_HUMAN Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1 Back     alignment and function description
>sp|Q4R333|ACL6A_MACFA Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1 Back     alignment and function description
>sp|O94805|ACL6B_HUMAN Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1 Back     alignment and function description
>sp|P86173|ACL6B_RAT Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2 Back     alignment and function description
>sp|Q99MR0|ACL6B_MOUSE Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1 Back     alignment and function description
>sp|A4FUX8|ACL6B_BOVIN Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1 Back     alignment and function description
>sp|Q84M92|ARP4_ARATH Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1 Back     alignment and function description
>sp|A2YR10|ARP4_ORYSI Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
307202650 440 Actin-like protein 6A [Harpegnathos salt 0.907 0.693 0.734 1e-135
340724322 440 PREDICTED: actin-like protein 6A-like is 0.907 0.693 0.734 1e-134
383854559 440 PREDICTED: actin-like protein 6A-like [M 0.907 0.693 0.731 1e-134
332030233 440 Actin-like protein 6A [Acromyrmex echina 0.970 0.740 0.696 1e-134
66523552 440 PREDICTED: brahma associated protein 55k 0.907 0.693 0.731 1e-134
307168237 440 Actin-like protein 6A [Camponotus florid 0.907 0.693 0.724 1e-134
350397811 440 PREDICTED: actin-like protein 6A-like is 0.907 0.693 0.727 1e-133
156546458 439 PREDICTED: actin-like protein 6A-like is 0.901 0.690 0.716 1e-130
156542947 439 PREDICTED: actin-like protein 6A-like [N 0.898 0.687 0.721 1e-129
242016697 438 conserved hypothetical protein [Pediculu 0.904 0.694 0.690 1e-126
>gi|307202650|gb|EFN81970.1| Actin-like protein 6A [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/305 (73%), Positives = 261/305 (85%)

Query: 3   AGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVD 62
           +GG+LYGGDEIGALVFD+G  SLRVGYAQED+PKAEIPAVVG+ EDG  TAS   PMD+D
Sbjct: 2   SGGMLYGGDEIGALVFDLGHHSLRVGYAQEDTPKAEIPAVVGIGEDGNNTASKAEPMDID 61

Query: 63  VKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIES 122
            K   +N+T SG KY+IDT  L+V R+ MEI SYMK+GMIEDWD FEKVLDYTYSK I+S
Sbjct: 62  DKKPDSNITQSGTKYYIDTTILHVPRRNMEIASYMKDGMIEDWDHFEKVLDYTYSKVIQS 121

Query: 123 GSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSG 182
            +EYHPVL SE+PWNIRSKREKL ELMFEKYNVPAFF+VKNAVLAAFANGR+TG+V DSG
Sbjct: 122 DAEYHPVLFSESPWNIRSKREKLTELMFEKYNVPAFFIVKNAVLAAFANGRSTGIVVDSG 181

Query: 183 ATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKE 242
           ATHTSA+PV DG+VLT AI KSPLGGDY++MQC+QFLQ+N+ID+ PPYMVG KE +KD +
Sbjct: 182 ATHTSAVPVQDGFVLTQAIVKSPLGGDYISMQCRQFLQDNDIDLSPPYMVGSKEVVKDHD 241

Query: 243 PPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGY 302
            P+W +KK +PEVT+SWHNY VKKV+QDFQ +VLQVSETP+DEK +  +P   YEFP GY
Sbjct: 242 KPRWVKKKGIPEVTKSWHNYMVKKVIQDFQATVLQVSETPYDEKIVSTIPAVQYEFPTGY 301

Query: 303 HQDFG 307
           HQDFG
Sbjct: 302 HQDFG 306

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340724322|ref|XP_003400531.1| PREDICTED: actin-like protein 6A-like isoform 1 [Bombus terrestris] gi|340724324|ref|XP_003400532.1| PREDICTED: actin-like protein 6A-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|383854559|ref|XP_003702788.1| PREDICTED: actin-like protein 6A-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332030233|gb|EGI70016.1| Actin-like protein 6A [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|66523552|ref|XP_625202.1| PREDICTED: brahma associated protein 55kd [Apis mellifera] Back     alignment and taxonomy information
>gi|307168237|gb|EFN61463.1| Actin-like protein 6A [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350397811|ref|XP_003484999.1| PREDICTED: actin-like protein 6A-like isoform 1 [Bombus impatiens] gi|350397814|ref|XP_003485000.1| PREDICTED: actin-like protein 6A-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|156546458|ref|XP_001607305.1| PREDICTED: actin-like protein 6A-like isoform 1 [Nasonia vitripennis] gi|345498382|ref|XP_003428217.1| PREDICTED: actin-like protein 6A-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|156542947|ref|XP_001601923.1| PREDICTED: actin-like protein 6A-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242016697|ref|XP_002428884.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513652|gb|EEB16146.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
FB|FBgn0025716425 Bap55 "Brahma associated prote 0.889 0.703 0.617 1.8e-101
UNIPROTKB|O96019 429 ACTL6A "Actin-like protein 6A" 0.904 0.708 0.572 1.8e-96
UNIPROTKB|O94805 426 ACTL6B "Actin-like protein 6B" 0.895 0.706 0.569 2.2e-96
MGI|MGI:1861453 429 Actl6a "actin-like 6A" [Mus mu 0.904 0.708 0.569 2.9e-96
RGD|1307747 429 Actl6a "actin-like 6A" [Rattus 0.904 0.708 0.569 2.9e-96
UNIPROTKB|A4FUX8 426 ACTL6B "Actin-like protein 6B" 0.895 0.706 0.566 5.9e-96
UNIPROTKB|A4IFJ8 429 ACTL6A "ACTL6A protein" [Bos t 0.904 0.708 0.572 5.9e-96
UNIPROTKB|E2RCX1 426 ACTL6B "Uncharacterized protei 0.895 0.706 0.566 5.9e-96
UNIPROTKB|F2Z4Z7 426 ACTL6B "Uncharacterized protei 0.895 0.706 0.566 5.9e-96
MGI|MGI:1933548 426 Actl6b "actin-like 6B" [Mus mu 0.895 0.706 0.566 5.9e-96
FB|FBgn0025716 Bap55 "Brahma associated protein 55kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 192/311 (61%), Positives = 243/311 (78%)

Query:     1 MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMD 60
             MS G +LYGGDEIGALVFD G  SLRVGYAQEDSPKAEIP+VVG+    G  A+ +T +D
Sbjct:     1 MSGGTMLYGGDEIGALVFDPGHHSLRVGYAQEDSPKAEIPSVVGI----G--AAPETNLD 54

Query:    61 VDVKPDTNNVT---ASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYS 117
              + K D NN T   A   K+++DTN + V R  ME+Q+YMK+GMI++WDLFEKV+DY Y+
Sbjct:    55 PETKTD-NNATPNNADQRKFYVDTNYVTVPRSNMEVQTYMKDGMIDNWDLFEKVIDYAYA 113

Query:   118 KCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGL 177
               I+S  EYHPVL SEA WN+R+ REKL ELMFEKYNVPAFFLVKNAVLAAF++GRAT L
Sbjct:   114 NVIQSEPEYHPVLFSEASWNVRNNREKLTELMFEKYNVPAFFLVKNAVLAAFSSGRATAL 173

Query:   178 VFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEA 237
             V DSGATHTSA+PVH+GYVL+ A+ KSPLGGD+L+ QC+Q L+++ ID+ P Y +  K+ 
Sbjct:   174 VVDSGATHTSAVPVHEGYVLSQAVVKSPLGGDFLSRQCRQHLEKHGIDLSPVYKIASKDV 233

Query:   238 IKDKEPPKWTRKKNLPE-VTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHY 296
             +K+++  ++T +K LPE +TQSW NY ++ ++QDFQ +VLQV E PFDE+    +P  HY
Sbjct:   234 VKERDNGRFTLRK-LPENLTQSWQNYMLQLMMQDFQMNVLQVLENPFDERVAAQIPTVHY 292

Query:   297 EFPNGYHQDFG 307
             EFPNGYHQDFG
Sbjct:   293 EFPNGYHQDFG 303
GO:0006338 "chromatin remodeling" evidence=ISS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0035060 "brahma complex" evidence=IDA
GO:0003713 "transcription coactivator activity" evidence=IC
GO:0000910 "cytokinesis" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0007517 "muscle organ development" evidence=IMP
GO:0007067 "mitosis" evidence=IMP
GO:0070983 "dendrite guidance" evidence=IMP
GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IMP
UNIPROTKB|O96019 ACTL6A "Actin-like protein 6A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O94805 ACTL6B "Actin-like protein 6B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1861453 Actl6a "actin-like 6A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307747 Actl6a "actin-like 6A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A4FUX8 ACTL6B "Actin-like protein 6B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFJ8 ACTL6A "ACTL6A protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCX1 ACTL6B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4Z7 ACTL6B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1933548 Actl6b "actin-like 6B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q09849ARP42_SCHPONo assigned EC number0.30810.78570.6226yesN/A
Q9Z2N8ACL6A_MOUSENo assigned EC number0.56600.90770.7109yesN/A
Q84M92ARP4_ARATHNo assigned EC number0.37020.94640.7210yesN/A
O96019ACL6A_HUMANNo assigned EC number0.56280.90770.7109yesN/A
Q6ZJW9ARP4_ORYSJNo assigned EC number0.39110.86010.6523yesN/A
Q6C061ARP4_YARLINo assigned EC number0.35380.87790.6828yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
pfam00022367 pfam00022, Actin, Actin 1e-95
smart00268373 smart00268, ACTIN, Actin 7e-64
COG5277 444 COG5277, COG5277, Actin and related proteins [Cyto 3e-45
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 3e-33
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 9e-33
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-29
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 3e-27
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 2e-26
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 1e-12
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score =  287 bits (737), Expect = 1e-95
 Identities = 104/298 (34%), Positives = 157/298 (52%), Gaps = 57/298 (19%)

Query: 11  DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNV 70
           DE+ ALV D GS + + G+A ED+P+A IP+VVG     G                    
Sbjct: 1   DEVSALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRG-------------------- 40

Query: 71  TASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVL 130
                KY++   AL   R G+E++  +++G++E+WD  EK+ ++T+ + +    E HP+L
Sbjct: 41  --VMVKYYVGDEAL-SKRPGLEVRYPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLL 97

Query: 131 MSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIP 190
           ++E P N  + REK  E+MFE + VPA +L K AVL+A+A+GR TGLV DSGA  TS +P
Sbjct: 98  LTEPPLNPPANREKATEIMFETFGVPALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVP 157

Query: 191 VHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKK 250
           V++GYVL  AI +S L GD LT   ++ L                               
Sbjct: 158 VYEGYVLQKAIRRSDLAGDDLTDYLRKLLS------------------------------ 187

Query: 251 NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPF-DEKSILNLPPSHYEFPNGYHQDFG 307
                T S++ Y+ ++VV+D ++S+  VS+ PF D  +  + P   YE P+GY    G
Sbjct: 188 ---SRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYELPDGYVIILG 242

Length = 367
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
KOG0679|consensus 426 100.0
KOG0676|consensus372 100.0
KOG0677|consensus 389 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280 414 Actin-related protein 3; Provisional 100.0
PF00022 393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277 444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680|consensus400 100.0
KOG0678|consensus 415 100.0
KOG0681|consensus 645 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 99.96
PRK13927334 rod shape-determining protein MreB; Provisional 99.95
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.92
KOG0797|consensus 618 99.92
PRK13929335 rod-share determining protein MreBH; Provisional 99.91
PRK13928336 rod shape-determining protein Mbl; Provisional 99.82
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.78
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.56
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.14
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.01
CHL00094 621 dnaK heat shock protein 70 98.74
PLN03184 673 chloroplast Hsp70; Provisional 98.68
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 98.65
PRK13410 668 molecular chaperone DnaK; Provisional 98.59
PTZ00400 663 DnaK-type molecular chaperone; Provisional 98.58
PRK05183 616 hscA chaperone protein HscA; Provisional 98.58
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 98.57
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.56
PRK13411 653 molecular chaperone DnaK; Provisional 98.55
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.46
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 98.43
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.39
PRK01433 595 hscA chaperone protein HscA; Provisional 98.38
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.35
PRK11678450 putative chaperone; Provisional 98.32
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.17
PRK13917344 plasmid segregation protein ParM; Provisional 98.11
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 97.77
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 97.22
PRK09472420 ftsA cell division protein FtsA; Reviewed 97.17
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 96.67
PF06277 473 EutA: Ethanolamine utilisation protein EutA; Inter 96.51
KOG0104|consensus 902 96.42
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 96.11
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 96.1
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 96.05
KOG0681|consensus 645 95.94
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 95.87
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 95.83
KOG0101|consensus 620 95.48
COG4820277 EutJ Ethanolamine utilization protein, possible ch 95.1
PRK10854 513 exopolyphosphatase; Provisional 94.97
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 93.8
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 92.58
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 90.99
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 89.06
KOG0103|consensus 727 86.53
COG4819 473 EutA Ethanolamine utilization protein, possible ch 85.93
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 84.83
>KOG0679|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.6e-68  Score=487.13  Aligned_cols=303  Identities=50%  Similarity=0.887  Sum_probs=282.1

Q ss_pred             CCCCCCcccCCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEec
Q psy3377           1 MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFID   80 (336)
Q Consensus         1 ~~~~~~~~~~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG   80 (336)
                      ||++  +||||++++||||+||+++||||||+|.|++++||++|.....++..                  ...+.+|++
T Consensus         1 Ms~~--~yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~------------------~~~~~~y~~   60 (426)
T KOG0679|consen    1 MSGG--VYGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA------------------EDKKGYYVD   60 (426)
T ss_pred             CCCc--cccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc------------------ccccceEee
Confidence            6665  99999999999999999999999999999999999999764332211                  012458999


Q ss_pred             chhhhcccCCeEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEE
Q psy3377          81 TNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFL  160 (336)
Q Consensus        81 ~~~~~~~~~~~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~  160 (336)
                      .+++..+|..+++..|+++|+|.|||.++.+|+|+|.++|+++|++||+|+|||++++++.|+|++|++||.++||++|+
T Consensus        61 ~~ai~~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L  140 (426)
T KOG0679|consen   61 ENAIHVPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYL  140 (426)
T ss_pred             chhccCCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEE
Confidence            99999999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             ehhHHHHHHHcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccC
Q psy3377         161 VKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKD  240 (336)
Q Consensus       161 ~~~~~la~~s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~  240 (336)
                      +++++|++||+||.||||||||+..|+|+||+||++++++++++++||++|+..++++|..+++++.|.+.+++++.++.
T Consensus       141 ~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~  220 (426)
T KOG0679|consen  141 AKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVRE  220 (426)
T ss_pred             echHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             CCCCcccccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccc
Q psy3377         241 KEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQ  320 (336)
Q Consensus       241 ~~~~~~~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p  320 (336)
                      -..+.+.++...-.++.||+.|..+.|..|+|++++++++.|++++.....+.+.|++|||++.++|.|||++||.||.|
T Consensus       221 g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~P  300 (426)
T KOG0679|consen  221 GYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKP  300 (426)
T ss_pred             cCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCc
Confidence            76666666777778899999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             ccc
Q psy3377         321 NIA  323 (336)
Q Consensus       321 ~~~  323 (336)
                      ++.
T Consensus       301 s~v  303 (426)
T KOG0679|consen  301 SLV  303 (426)
T ss_pred             chh
Confidence            965

>KOG0676|consensus Back     alignment and domain information
>KOG0677|consensus Back     alignment and domain information
>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680|consensus Back     alignment and domain information
>KOG0678|consensus Back     alignment and domain information
>KOG0681|consensus Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>KOG0797|consensus Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>KOG0104|consensus Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>KOG0681|consensus Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0101|consensus Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>KOG0103|consensus Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 8e-31
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 2e-30
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 3e-30
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 4e-30
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 5e-30
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 5e-30
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 5e-30
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 5e-30
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 6e-30
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 6e-30
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 6e-30
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 7e-30
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 7e-30
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 7e-30
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 7e-30
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 7e-30
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 8e-30
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 9e-30
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 9e-30
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 9e-30
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 1e-29
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 1e-29
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 2e-29
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 2e-29
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 3e-29
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 3e-29
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 3e-29
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 3e-29
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 3e-29
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 3e-29
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 3e-29
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 7e-29
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 7e-29
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 8e-29
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 1e-28
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 1e-28
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 1e-28
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 3e-28
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 5e-28
3qb0_A 498 Crystal Structure Of Actin-Related Protein Arp4 Fro 3e-21
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 1e-19
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 9e-18
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 2e-17
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 2e-17
4i6m_A 477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 1e-13
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (328), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 20/214 (9%)
Query: 10  GDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNN 69
           GDE+ ALV D GS   + G+A +D+P+A  P++VG     G    +              
Sbjct: 2   GDEVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGM-------------- 47
Query: 70  VTASGNKYFIDTNALYVARKGMEIQSY-MKEGMIEDWDLFEKVLDYTYSKCIESGSEYHP 128
                + Y  D      +++G+    Y ++ G++ +WD  EK+  +T+   +    E HP
Sbjct: 48  --GQKDSYVGDEAQ---SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
Query: 129 VLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSA 188
           VL++EAP N ++ REK+ ++MFE +N PA ++   AVL+ +A+GR TG+V DSG   T  
Sbjct: 103 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 162
Query: 189 IPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222
           +P+++GY L HAI +  L G  LT    + L E 
Sbjct: 163 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
3qb0_A 498 Actin-related protein 4; actin fold, ATP binding, 5e-86
1k8k_A 418 ARP3, actin-like protein 3, actin-2; beta-propelle 2e-73
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 8e-70
3dwl_A 427 Actin-related protein 3; propellor, actin-binding, 1e-62
1k8k_B 394 ARP2, actin-like protein 2; beta-propeller, struct 4e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
 Score =  266 bits (682), Expect = 5e-86
 Identities = 74/313 (23%), Positives = 137/313 (43%), Gaps = 38/313 (12%)

Query: 1   MSAGGI-LYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPM 59
           MS   + +YGGDE+ A+V D GS +  +GY+  D P++ +P+V G               
Sbjct: 10  MSNAALQVYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTAD---------- 59

Query: 60  DVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKC 119
                         GNK      ++ + RK  E++  ++ G++ DWD  ++   +     
Sbjct: 60  -------------EGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNE 106

Query: 120 IESGSEYH-PVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLV 178
           +   S    P L++E  WN    R+K LE++ E     A +L   +   +FA GR   LV
Sbjct: 107 LYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLV 166

Query: 179 FDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAI 238
            D G    S  P+ DG  L+ +  ++ + G ++    K+ L+     IIP + +  ++  
Sbjct: 167 VDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKE--IIPLFAIKQRK-- 222

Query: 239 KDKEPPKWTRKKNLPEVTQSWHNYSVKK-VVQDFQQSVLQVSETPFDEKSILNLPPS--- 294
                P++ +K    EV +S ++Y+  +   Q+ ++++  +  T   E++   L  +   
Sbjct: 223 -----PEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKR 277

Query: 295 HYEFPNGYHQDFG 307
             E P      F 
Sbjct: 278 SIESPWNEEIVFD 290
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
3qb0_A 498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A 427 Actin-related protein 3; propellor, actin-binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B 394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A 593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A 418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A 655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.9
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.6
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.51
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.47
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.33
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.3
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.27
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.01
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 98.95
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 98.86
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 98.76
3js6_A355 Uncharacterized PARM protein; partition, segregati 98.65
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.63
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 98.5
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 98.47
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 98.44
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 97.22
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 96.44
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 95.83
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 95.75
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 95.41
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 95.0
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 90.37
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 90.21
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 89.35
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 83.16
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.3e-63  Score=487.74  Aligned_cols=303  Identities=25%  Similarity=0.458  Sum_probs=252.1

Q ss_pred             CCC-CCCcccCCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEe
Q psy3377           1 MSA-GGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFI   79 (336)
Q Consensus         1 ~~~-~~~~~~~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   79 (336)
                      ||+ +..+||||++.+||||+||++|||||||++.|++++||+|++++...                       .++.++
T Consensus        10 ~~~~~~~~yggde~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~-----------------------~~~~~v   66 (498)
T 3qb0_A           10 MSNAALQVYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE-----------------------GNKKIF   66 (498)
T ss_dssp             ---------CCCCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS-----------------------SCCEEC
T ss_pred             hccchhcccCCCCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC-----------------------CccEEE
Confidence            544 45599999999999999999999999999999999999999987532                       146789


Q ss_pred             cchhhhcccCCeEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCC-ceEEEeCCCCCHHHHHHHHHHHHhhcCCCeE
Q psy3377          80 DTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYH-PVLMSEAPWNIRSKREKLLELMFEKYNVPAF  158 (336)
Q Consensus        80 G~~~~~~~~~~~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~-pvllte~~~~~~~~r~~l~e~lFE~~~vp~v  158 (336)
                      |+++....++.+.+.+|+++|+|.|||++|+||+|+|.+.|++++++| |||||||+++++..|++++|++||+|++|++
T Consensus        67 G~e~~~~~r~~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav  146 (498)
T 3qb0_A           67 SEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEAC  146 (498)
T ss_dssp             CTTGGGSCCTTEEEEESEETTEESCHHHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEE
T ss_pred             ecHHHhcCcCceEEeccCcCCEEccHHHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeE
Confidence            997556678899999999999999999999999999988999999999 9999999999999999999999999999999


Q ss_pred             EEehhHHHHHHHcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceec
Q psy3377         159 FLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAI  238 (336)
Q Consensus       159 ~~~~~~~la~~s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v  238 (336)
                      +++.+++||+||+|++||||||+|++.|+|+||++|++++++++++++||++||++|+++|+++++  .|.+.+..+...
T Consensus       147 ~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i--~P~~~i~~k~~~  224 (498)
T 3qb0_A          147 YLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEI--IPLFAIKQRKPE  224 (498)
T ss_dssp             EEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCC--CCSTTEEECSSS
T ss_pred             eecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccc--cchhhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999987643  455444332110


Q ss_pred             cCCCCCcccccCCCC-CCChhhhhhh-hhHHHHHHHHHhhhccCC-Ccchh--hhcCCCCeEEECCCcceeeecCc-ccc
Q psy3377         239 KDKEPPKWTRKKNLP-EVTQSWHNYS-VKKVVQDFQQSVLQVSET-PFDEK--SILNLPPSHYEFPNGYHQDFGCR-ALP  312 (336)
Q Consensus       239 ~~~~~~~~~~Ke~~c-~~~~s~~~~~-~~~v~~d~~~~~~~~~~~-~~~~~--~~~~~~~~~y~LPDg~~i~l~~E-rf~  312 (336)
                             +. ++.+. .++.||.+|. .+.+++|+||.+|.++.. .+++.  .......+.|+||||++|.++.| ||+
T Consensus       225 -------~~-~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~  296 (498)
T 3qb0_A          225 -------FI-KKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYG  296 (498)
T ss_dssp             -------CE-ECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHH
T ss_pred             -------cc-cccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHhhh
Confidence                   00 11222 3567899998 455999999999998764 34332  12345678999999999999999 999


Q ss_pred             cccccccccccCCC-----CCCCCCCCCC
Q psy3377         313 YSRGSVVQNIANMQ-----PGSGISPTDH  336 (336)
Q Consensus       313 ~~E~lF~p~~~~~~-----~~~gi~~~~~  336 (336)
                      |||+||+|+++|+.     +..|+.++.|
T Consensus       297 ~pE~LF~P~~~g~~~~~~~~~~~~~~~~~  325 (498)
T 3qb0_A          297 FAEELFLPKEDDIPANWPRSNSGVVKTWR  325 (498)
T ss_dssp             HHHTTTSCCGGGSCTTSCCCSSSCCCCCS
T ss_pred             CchhhCCHhHcCCcccccccccccccccc
Confidence            99999999999982     1356655543
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 336
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 8e-39
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 1e-35
d1k8ka2 258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 1e-19
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 5e-17
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 1e-14
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  133 bits (335), Expect = 8e-39
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 11/165 (6%)

Query: 12  EIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVT 71
            + A V D G+   ++GYA    P+  IP+ + + E              D         
Sbjct: 2   RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES---------AKVGDQAQRRVMKG 52

Query: 72  ASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLM 131
                +FI   A  + +     +  ++ G++EDWDL E+ ++    K + +  E H  L+
Sbjct: 53  VDDLDFFIGDEA--IEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLL 110

Query: 132 SEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATG 176
           +E P N    RE   E+MFE +NVP  ++   AVLA  A+  +  
Sbjct: 111 TEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ 155
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.91
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.89
d1k8ka2 258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.86
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.32
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.57
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 97.21
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 96.91
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 94.53
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 94.45
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 93.63
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 93.3
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 90.51
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 89.74
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 89.43
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 89.34
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 88.58
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-38  Score=266.06  Aligned_cols=155  Identities=27%  Similarity=0.471  Sum_probs=130.5

Q ss_pred             CCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCe
Q psy3377          12 EIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGM   91 (336)
Q Consensus        12 ~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~   91 (336)
                      ..++||||+||+++|||||||+.|++++||++|.+.......         .............++++|++++  .+..+
T Consensus         2 ~~PavViD~GS~~~KaG~age~~P~~i~Ps~vg~~~~~~~~~---------~~~~~~~~~~~~~~~~ig~e~~--~~~~~   70 (158)
T d1k8ka1           2 RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGD---------QAQRRVMKGVDDLDFFIGDEAI--EKPTY   70 (158)
T ss_dssp             CSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC--------------------CCCTTGGGCEEEGGGGT--SCTTS
T ss_pred             CCCcEEEECCCCeEEEEECCCCCCCEEeccceeecccccccC---------chhcccccCCCccceecChhhh--hCCCc
Confidence            467899999999999999999999999999999875532210         0000000011235789999974  56789


Q ss_pred             EEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHc
Q psy3377          92 EIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN  171 (336)
Q Consensus        92 ~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~  171 (336)
                      .+.+|+++|.|.|||+++.+|+|+|++.|+++|++||||+|||+++++..|++++|+|||+|+||+++++++++||+||+
T Consensus        71 ~~~~pi~~G~i~dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~  150 (158)
T d1k8ka1          71 ATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAAS  150 (158)
T ss_dssp             EEECCEETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHG
T ss_pred             cccccccCCeEecHHHHHHHHHHHHHHhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEE
Q psy3377         172 GRATGL  177 (336)
Q Consensus       172 g~~tgl  177 (336)
                      |+++++
T Consensus       151 g~~~~~  156 (158)
T d1k8ka1         151 WTSRQV  156 (158)
T ss_dssp             GGSTTC
T ss_pred             CCCCCC
Confidence            998763
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure