Psyllid ID: psy3381

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MDRIARDSSAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVRS
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEcccccEEEccEEEEEEcccEEccccccHHHHHHHHHHcccEEEEcEEccccccccEEEEccccccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEEccccEEEEEEccccHHHHHHHHcccccHHHHHHHHHccccEEEEEEEEEEccccEEEEEEcccccEEccEEcEEEEcc
Coil and Loop (DISEMBL)
mdriardssavvcpvidvlddsslefhfrdSTGILKEALACIgvgwleplldriardnstvvspvielirdddfalrfcrpqfiqiggfswslevrs
Flexible Loop (DISEMBL)
mdriardssavvcpvidvlDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFiqiggfswslevrs
Low Complexity Region (SEG)
MDRIARDSSAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVRS
Disordered region (IsUnstruct)
*********AVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSL****
Disordered Region (DISOPRED)
*******SSAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVRS
Disordered Region (DISEMBL)
********SAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVRS
Disordered Region (DISPRO)
**RIARDSSAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRIARDSSAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
Q95ZJ1	626	Polypeptide N-acetylgalac	yes	N/A	0.515	0.079	0.52	2e-10
Q8MRC9	650	Putative polypeptide N-ac	yes	N/A	0.515	0.076	0.5	3e-09
Q07537	559	Polypeptide N-acetylgalac	yes	N/A	0.525	0.091	0.490	2e-07
Q29121	559	Polypeptide N-acetylgalac	yes	N/A	0.525	0.091	0.490	2e-07
Q10473	559	Polypeptide N-acetylgalac	yes	N/A	0.525	0.091	0.490	2e-07
Q10472	559	Polypeptide N-acetylgalac	yes	N/A	0.525	0.091	0.490	2e-07
Q8IUC8	556	Polypeptide N-acetylgalac	no	N/A	0.525	0.091	0.471	5e-07
Q6UE39	556	Polypeptide N-acetylgalac	no	N/A	0.525	0.091	0.471	6e-07
Q8CF93	556	Polypeptide N-acetylgalac	yes	N/A	0.525	0.091	0.471	6e-07
O08912	559	Polypeptide N-acetylgalac	no	N/A	0.515	0.089	0.480	6e-07

>sp|Q95ZJ1|GALT5_CAEEL Polypeptide N-acetylgalactosaminyltransferase 5 OS=Caenorhabditis elegans GN=gly-5 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 4EC: 1

>sp|Q8MRC9|GALT9_DROME Putative polypeptide N-acetylgalactosaminyltransferase 9 OS=Drosophila melanogaster GN=pgant9 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GWLEPLLDRIAR+++TVV PVI++I D+     +     + +GGF W+L+
Sbjct: 309 GWLEPLLDRIARNSTTVVCPVIDVISDETLEYHYRDSGGVNVGGFDWNLQ 358

May catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q07537|GALT1_BOVIN Polypeptide N-acetylgalactosaminyltransferase 1 OS=Bos taurus GN=GALNT1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 216 VGWLEPLLARIKHDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q29121|GALT1_PIG Polypeptide N-acetylgalactosaminyltransferase 1 OS=Sus scrofa GN=GALNT1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 216 VGWLEPLLARIKHDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q10473|GALT1_RAT Polypeptide N-acetylgalactosaminyltransferase 1 OS=Rattus norvegicus GN=Galnt1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 216 VGWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q10472|GALT1_HUMAN Polypeptide N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=GALNT1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 216 VGWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q8IUC8|GLT13_HUMAN Polypeptide N-acetylgalactosaminyltransferase 13 OS=Homo sapiens GN=GALNT13 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           +GWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 215 LGWLEPLLARIKEDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 265

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a much stronger activity than GALNT1 to transfer GalNAc to mucin peptides, such as Muc5Ac and Muc7. Able to glycosylate SDC3. May be responsible for the synthesis of Tn antigen in neuronal cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q6UE39|GLT13_RAT Polypeptide N-acetylgalactosaminyltransferase 13 OS=Rattus norvegicus GN=Galnt13 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           +GWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 215 LGWLEPLLARIKEDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 265

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a much stronger activity than GALNT1 to transfer GalNAc to mucin peptides, such as Muc5Ac and Muc7. Able to glycosylate SDC3. May be responsible for the synthesis of Tn antigen in neuronal cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q8CF93|GLT13_MOUSE Polypeptide N-acetylgalactosaminyltransferase 13 OS=Mus musculus GN=Galnt13 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           +GWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 215 LGWLEPLLARIKEDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 265

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a much stronger activity than GALNT1 to transfer GalNAc to mucin peptides, such as Muc5Ac and Muc7. Able to glycosylate SDC3. Probably responsible for the synthesis of Tn antigen in neuronal cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|O08912|GALT1_MOUSE Polypeptide N-acetylgalactosaminyltransferase 1 OS=Mus musculus GN=Galnt1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           GWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 217 GWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
324507488	632	Polypeptide N-acetylgalactosaminyltransf	0.515	0.079	0.54	7e-10
427779849	683	Putative polypeptide n-acetylgalactosami	0.793	0.112	0.395	3e-09
3047195	624	GLY5c [Caenorhabditis elegans]	0.515	0.080	0.52	8e-09
3047193	626	GLY5b [Caenorhabditis elegans]	0.515	0.079	0.52	8e-09
3047191	623	GLY5a [Caenorhabditis elegans]	0.515	0.080	0.52	8e-09
71993513	623	Protein GLY-5, isoform b [Caenorhabditis	0.515	0.080	0.52	8e-09
71993517	624	Protein GLY-5, isoform c [Caenorhabditis	0.515	0.080	0.52	8e-09
71993511	626	Protein GLY-5, isoform a [Caenorhabditis	0.515	0.079	0.52	8e-09
170572320	576	glycosyl transferase, group 2 family pro	0.515	0.086	0.52	9e-09
268576200	630	C. briggsae CBR-GLY-5 protein [Caenorhab	0.515	0.079	0.52	9e-09

>gi|324507488|gb|ADY43175.1| Polypeptide N-acetylgalactosaminyltransferase 5 [Ascaris suum]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI R++STVV PVI++I D+ F   + +  F  +GGF WSL+
Sbjct: 282 GWIEPLLDRIKRNSSTVVCPVIDVIDDETFEYHYSKAYFTNVGGFDWSLQ 331

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|427779849|gb|JAA55376.1| Putative polypeptide n-acetylgalactosaminyltransferase [Rhipicephalus pulchellus]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 19/96 (19%)

Query: 1   MDRIARDSSAV--VCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDN 58
           +DRIAR+S+ V    PV+  LD                    C   GWLEPLLDRIAR++
Sbjct: 306 LDRIARNSTTVXATAPVLTYLDSHC----------------ECTE-GWLEPLLDRIARNS 348

Query: 59  STVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           +TVV PVI++I D  F   +     + +GGF W+L+
Sbjct: 349 TTVVCPVIDVISDSTFEYHYRDSGGVNVGGFDWNLQ 384

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3047195|gb|AAC13673.1| GLY5c [Caenorhabditis elegans]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|3047193|gb|AAC13672.1| GLY5b [Caenorhabditis elegans]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|3047191|gb|AAC13671.1| GLY5a [Caenorhabditis elegans]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|71993513|ref|NP_001022851.1| Protein GLY-5, isoform b [Caenorhabditis elegans] gi|14530626|emb|CAC42368.1| Protein GLY-5, isoform b [Caenorhabditis elegans]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|71993517|ref|NP_001022852.1| Protein GLY-5, isoform c [Caenorhabditis elegans] gi|14530627|emb|CAC42369.1| Protein GLY-5, isoform c [Caenorhabditis elegans]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|71993511|ref|NP_001022850.1| Protein GLY-5, isoform a [Caenorhabditis elegans] gi|51316068|sp|Q95ZJ1.2|GALT5_CAEEL RecName: Full=Polypeptide N-acetylgalactosaminyltransferase 5; Short=pp-GaNTase 5; AltName: Full=Protein-UDP acetylgalactosaminyltransferase 5; AltName: Full=UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5 gi|5824785|emb|CAB54435.1| Protein GLY-5, isoform a [Caenorhabditis elegans]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|170572320|ref|XP_001892064.1| glycosyl transferase, group 2 family protein [Brugia malayi] gi|158602953|gb|EDP39125.1| glycosyl transferase, group 2 family protein [Brugia malayi]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI R+  TVV PVI++I D+ F   + +  F  +GGF WSL+
Sbjct: 190 GWVEPLLDRIKRNPKTVVCPVIDVIDDNTFEYHYSKAYFTNVGGFDWSLQ 239

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|268576200|ref|XP_002643080.1| C. briggsae CBR-GLY-5 protein [Caenorhabditis briggsae]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
           GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct: 280 GWIEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 329

Source: Caenorhabditis briggsae

Species: Caenorhabditis briggsae

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
WB|WBGene00001630	626	gly-5 [Caenorhabditis elegans	0.515	0.079	0.52	3.2e-09
FB|FBgn0050463	650	CG30463 [Drosophila melanogast	0.515	0.076	0.5	1.5e-08
UNIPROTKB|I3LM72	112	LOC100520461 "Uncharacterized	0.525	0.455	0.471	4.2e-08
UNIPROTKB|K7EJV8	387	GALNT1 "Polypeptide N-acetylga	0.525	0.131	0.490	1.6e-07
UNIPROTKB|Q07537	559	GALNT1 "Polypeptide N-acetylga	0.525	0.091	0.490	2.3e-07
UNIPROTKB|E2RM54	559	GALNT1 "Uncharacterized protei	0.525	0.091	0.490	2.3e-07
UNIPROTKB|F1SAI6	559	LOC100738545 "Uncharacterized	0.525	0.091	0.490	2.3e-07
UNIPROTKB|Q29121	559	GALNT1 "Polypeptide N-acetylga	0.525	0.091	0.490	2.3e-07
UNIPROTKB|F5GY99	499	GALNT1 "Polypeptide N-acetylga	0.525	0.102	0.490	2.5e-07
UNIPROTKB|Q10472	559	GALNT1 "Polypeptide N-acetylga	0.525	0.091	0.490	3e-07

WB|WBGene00001630 gly-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 146 (56.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query:    45 GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
             GW+EPLLDRI RD +TVV PVI++I D+ F     +  F  +GGF W L+
Sbjct:   276 GWMEPLLDRIKRDPTTVVCPVIDVIDDNTFEYHHSKAYFTSVGGFDWGLQ 325

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0046854 "phosphatidylinositol phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018243 "protein O-linked glycosylation via threonine" evidence=IDA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IDA

FB|FBgn0050463 CG30463 [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query:    45 GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
             GWLEPLLDRIAR+++TVV PVI++I D+     +     + +GGF W+L+
Sbjct:   309 GWLEPLLDRIARNSTTVVCPVIDVISDETLEYHYRDSGGVNVGGFDWNLQ 358

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=ISS

UNIPROTKB|I3LM72 LOC100520461 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             +GWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:    34 LGWLEPLLARIKEDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 84

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|K7EJV8 GALNT1 "Polypeptide N-acetylgalactosaminyltransferase 1 soluble form" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:   216 VGWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|Q07537 GALNT1 "Polypeptide N-acetylgalactosaminyltransferase 1" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:   216 VGWLEPLLARIKHDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0018243 "protein O-linked glycosylation via threonine" evidence=IEA

GO:0018242 "protein O-linked glycosylation via serine" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RM54 GALNT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:   216 VGWLEPLLARIKHDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0018243 "protein O-linked glycosylation via threonine" evidence=IEA

GO:0018242 "protein O-linked glycosylation via serine" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1SAI6 LOC100738545 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:   216 VGWLEPLLARIKHDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0018243 "protein O-linked glycosylation via threonine" evidence=IEA

GO:0018242 "protein O-linked glycosylation via serine" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q29121 GALNT1 "Polypeptide N-acetylgalactosaminyltransferase 1" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:   216 VGWLEPLLARIKHDRKTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

GO:0006486 "protein glycosylation" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F5GY99 GALNT1 "Polypeptide N-acetylgalactosaminyltransferase 1 soluble form" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:   156 VGWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 206

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0006493 "protein O-linked glycosylation" evidence=IEA

UNIPROTKB|Q10472 GALNT1 "Polypeptide N-acetylgalactosaminyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query:    44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
             VGWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct:   216 VGWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 266

GO:0016021 "integral to membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0006493 "protein O-linked glycosylation" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0016266 "O-glycan processing" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IDA

GO:0018242 "protein O-linked glycosylation via serine" evidence=IDA

GO:0018243 "protein O-linked glycosylation via threonine" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95ZJ1	GALT5_CAEEL	2, ., 4, ., 1, ., 4, 1	0.52	0.5154	0.0798	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	97
cd02510	299	cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo	3e-14
cd02510	299	cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo	6e-05

>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQF-IQIGGFSWSLE 94
           VGWLEPLL RIA +  TVV P+I++I  D F     R       GGF WSL 
Sbjct: 98  VGWLEPLLARIAENRKTVVCPIIDVIDADTFEY---RGSSGDARGGFDWSLH 146

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 2   DRIARDSSAVVCPVIDVLDDSSLEFH--FRDSTGILKEALACIGVGWLEPLLDRIARDNS 59
            RIA +   VVCP+IDV+D  + E+     D+ G    +L      WL    +   R++ 
Sbjct: 106 ARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFK---WLPLPEEERRRESP 162

Query: 60  T--VVSPVI 66
           T  + SP +
Sbjct: 163 TAPIRSPTM 171

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
KOG3736|consensus	578		99.95
KOG3738|consensus	559		99.95
KOG3737|consensus	603		99.85
KOG3736|consensus	578		99.63
KOG3738|consensus	559		99.55
KOG3737|consensus	603		99.01
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	98.48
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	92.97
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	92.78
PF02709	78	Glyco_transf_7C: N-terminal domain of galactosyltr	92.43
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	82.47

>KOG3736|consensus

Probab=99.95  E-value=3e-29  Score=200.48  Aligned_cols=94  Identities=29%  Similarity=0.425  Sum_probs=81.7

Q ss_pred             CcccccCCCeEEeceEEEEeCCCceEEec--CCcceEecccceeeeeecc-chhhhhh-cC-CCeEecceee----eEcc
Q psy3381           1 MDRIARDSSAVVCPVIDVLDDSSLEFHFR--DSTGILKEALACIGVGWLE-PLLDRIA-RD-NSTVVSPVIE----LIRD   71 (97)
Q Consensus         1 l~ri~~~~~~vv~PvID~Id~~tf~~~~~--~~~G~f~w~l~~~~~~Wl~-pll~ri~-~~-~~~i~sP~i~----~Id~   71 (97)
                      |+||++|+++|||||||+||.+||+|...  ...|+|+|.   ++|+|.. |+-...+ ++ ..||+||+|+    ||||
T Consensus       248 L~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~---l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r  324 (578)
T KOG3736|consen  248 LARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWE---LTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDR  324 (578)
T ss_pred             HHHhhhcCceeecceEEeecCcCceecccCccceeeeecc---eeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeH
Confidence            68999999999999999999999999983  345999999   6699964 4433333 44 4689999999    9999


Q ss_pred             cchhhhcc-CCCCceeEEEeeEEEEeC
Q psy3381          72 DDFALRFC-RPQFIQIGGFSWSLEVRS   97 (97)
Q Consensus        72 ~~F~~~g~-d~g~~~~Gg~nwelsfr~   97 (97)
                      +||+++|+ |+||++|||||+|||||+
T Consensus       325 ~yF~eiG~yD~gMdiwGGENlElSfrv  351 (578)
T KOG3736|consen  325 KYFGELGSYDEGMDIWGGENLELSFRV  351 (578)
T ss_pred             HHHhhccCccccccccChhhceeeEEE
Confidence            99999998 999999999999999984

>KOG3738|consensus

Probab=99.95  E-value=5.3e-29  Score=192.32  Aligned_cols=93  Identities=22%  Similarity=0.322  Sum_probs=82.4

Q ss_pred             CcccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeecc--chhhhhhcCCC-eEecceee----eEcc
Q psy3381           1 MDRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLE--PLLDRIARDNS-TVVSPVIE----LIRD   71 (97)
Q Consensus         1 l~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~--pll~ri~~~~~-~i~sP~i~----~Id~   71 (97)
                      |+|+|||+++||||+||+||.+||.|..+.+  .|+|||+   ++|+|..  |....-+.+|+ ||+||+|+    +||+
T Consensus       226 L~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWs---LhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk  302 (559)
T KOG3738|consen  226 LERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWS---LHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDK  302 (559)
T ss_pred             HHHHhhcccceeecccccccccccccccchhhhcCCcceE---EEEEehhcCHHHHhhccCCCCcccCccccceeEEecH
Confidence            6899999999999999999999999998655  4999999   7799964  44444445665 79999999    9999


Q ss_pred             cchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          72 DDFALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        72 ~~F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      .+|.++|. |+.|++|||||+|||||
T Consensus       303 ~wF~~LGkyd~~mdiWGGEn~Elsfr  328 (559)
T KOG3738|consen  303 EWFNELGKYDMDMDIWGGENLELSFR  328 (559)
T ss_pred             HHHHHhcccCccccccCCcceEEEEE
Confidence            99999998 99999999999999998

>KOG3737|consensus

Probab=99.85  E-value=3.7e-22  Score=154.64  Aligned_cols=96  Identities=22%  Similarity=0.276  Sum_probs=80.5

Q ss_pred             CcccccCCCeEEeceEEEEeCCCceEEec---CC---cceEecccceeeeeeccchhh-hhhcCCCeEecceee----eE
Q psy3381           1 MDRIARDSSAVVCPVIDVLDDSSLEFHFR---DS---TGILKEALACIGVGWLEPLLD-RIARDNSTVVSPVIE----LI   69 (97)
Q Consensus         1 l~ri~~~~~~vv~PvID~Id~~tf~~~~~---~~---~G~f~w~l~~~~~~Wl~pll~-ri~~~~~~i~sP~i~----~I   69 (97)
                      |++|.+|+|.+.+|+||.||.+|+||.+.   +.   .|+|+|.+.. ...=++|.-. +.++|+.|++||+++    ||
T Consensus       262 lAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLy-Ke~~~t~rE~r~RkhnsePyRSPthAGGLfAI  340 (603)
T KOG3737|consen  262 LAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLY-KEVPLTPREKRLRKHNSEPYRSPTHAGGLFAI  340 (603)
T ss_pred             ccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhhee-ccCCCCHHHHHhhhccCCCCCCcccccceeee
Confidence            68999999999999999999999999973   32   3999999762 1111223333 356788999999999    99


Q ss_pred             cccchhhhcc-CCCCceeEEEeeEEEEeC
Q psy3381          70 RDDDFALRFC-RPQFIQIGGFSWSLEVRS   97 (97)
Q Consensus        70 d~~~F~~~g~-d~g~~~~Gg~nwelsfr~   97 (97)
                      +|++|.++|. |+|+.+|||||+|||||+
T Consensus       341 nRe~F~ELG~YDpgLqiWGGEnfElSfKI  369 (603)
T KOG3737|consen  341 NREFFFELGLYDPGLQIWGGENFELSFKI  369 (603)
T ss_pred             hHHHHHHhccCCCcceeecCcceeEEEEE
Confidence            9999999998 999999999999999995

>KOG3736|consensus

Probab=99.63  E-value=1.5e-16  Score=127.88  Aligned_cols=92  Identities=37%  Similarity=0.612  Sum_probs=80.1

Q ss_pred             ccccCCCeEEeceEEEEeCCCceEEe------------------cCCcceEecccc-----------------eeeeeec
Q psy3381           3 RIARDSSAVVCPVIDVLDDSSLEFHF------------------RDSTGILKEALA-----------------CIGVGWL   47 (97)
Q Consensus         3 ri~~~~~~vv~PvID~Id~~tf~~~~------------------~~~~G~f~w~l~-----------------~~~~~Wl   47 (97)
                      .|...|..++..+|-+.|.++.+|..                  ..+.|++++++.                 |++.+||
T Consensus       165 vi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWL  244 (578)
T KOG3736|consen  165 VINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSKVRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWL  244 (578)
T ss_pred             ehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcceeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcc
Confidence            46678889999999999999988832                  234488887776                 5999999


Q ss_pred             cchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEEe
Q psy3381          48 EPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        48 ~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsfr   96 (97)
                      ||+++||++++++|+||+||+||.++|+|...  +...+|||||+|.|+
T Consensus       245 ePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~--~~~~rGgFdW~l~f~  291 (578)
T KOG3736|consen  245 EPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQ--SELMRGGFDWELTFK  291 (578)
T ss_pred             hHHHHHhhhcCceeecceEEeecCcCceeccc--CccceeeeecceeEE
Confidence            99999999999999999999999999999874  367899999999998

>KOG3738|consensus

Probab=99.55  E-value=7.7e-16  Score=119.71  Aligned_cols=90  Identities=33%  Similarity=0.606  Sum_probs=72.1

Q ss_pred             cccCCCeEEeceEEEEeCCCceEEe---------------cCCcceEeccc-----------------ceeeeeeccchh
Q psy3381           4 IARDSSAVVCPVIDVLDDSSLEFHF---------------RDSTGILKEAL-----------------ACIGVGWLEPLL   51 (97)
Q Consensus         4 i~~~~~~vv~PvID~Id~~tf~~~~---------------~~~~G~f~w~l-----------------~~~~~~Wl~pll   51 (97)
                      +.+.|..++..+|-|.|.+. +-.-               ..+.|+++=+.                 +|||.+||||++
T Consensus       148 lnrsP~~li~EiILVDD~S~-Dped~~~L~ri~kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL  226 (559)
T KOG3738|consen  148 LNRSPEHLIHEIILVDDFSQ-DPEDGKLLKRIPKVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLL  226 (559)
T ss_pred             HcCChHHhhheeEEecCCCC-ChHHHHHHhhhheeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHH
Confidence            45778888999999988766 2210               12225444322                 259999999999


Q ss_pred             hhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEEe
Q psy3381          52 DRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        52 ~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsfr   96 (97)
                      +|+++|++.|+||+||.||-++|.|+|.  ..+.+|||+|.|.|+
T Consensus       227 ~Rvaed~trvVsPiiDvIn~dnf~Y~~a--sadLrGGFDWsLhF~  269 (559)
T KOG3738|consen  227 ERVAEDTTRVVSPIIDVINLDNFSYVGA--SADLRGGFDWSLHFK  269 (559)
T ss_pred             HHHhhcccceeecccccccccccccccc--hhhhcCCcceEEEEE
Confidence            9999999999999999999999999997  357899999999997

>KOG3737|consensus

Probab=99.01  E-value=5.3e-11  Score=93.04  Aligned_cols=94  Identities=23%  Similarity=0.373  Sum_probs=76.6

Q ss_pred             ccccCCCeEEeceEEEEeCCCceEEe-------------------cCCcceEecccc-----------------eeeeee
Q psy3381           3 RIARDSSAVVCPVIDVLDDSSLEFHF-------------------RDSTGILKEALA-----------------CIGVGW   46 (97)
Q Consensus         3 ri~~~~~~vv~PvID~Id~~tf~~~~-------------------~~~~G~f~w~l~-----------------~~~~~W   46 (97)
                      -|++.|+..+..|+-+.|.++-++.+                   ..+.|+++++-.                 |++.+|
T Consensus       178 Vi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNW  257 (603)
T KOG3737|consen  178 VIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNW  257 (603)
T ss_pred             HHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecchhhhhhhhhccchhhccccEEEEEecceeeeccc
Confidence            36789999999999999998887644                   122366665544                 499999


Q ss_pred             ccchhhhhhcCCCeEecceeeeEcccchhhhc--cCCCCceeEEEeeEEEEe
Q psy3381          47 LEPLLDRIARDNSTVVSPVIELIRDDDFALRF--CRPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        47 l~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g--~d~g~~~~Gg~nwelsfr   96 (97)
                      |+|++++|..|+|....|+||.||.++|+|..  +.+....+|.|.|.|-+|
T Consensus       258 lpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyK  309 (603)
T KOG3737|consen  258 LPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYK  309 (603)
T ss_pred             ccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheec
Confidence            99999999999999999999999999999975  222336799999999876

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=98.48  E-value=3.9e-08  Score=72.31  Aligned_cols=92  Identities=25%  Similarity=0.368  Sum_probs=69.8

Q ss_pred             cccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeeccchhhh--hhcCCCeEecceee----eEcccc
Q psy3381           2 DRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLEPLLDR--IARDNSTVVSPVIE----LIRDDD   73 (97)
Q Consensus         2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~pll~r--i~~~~~~i~sP~i~----~Id~~~   73 (97)
                      +.+.++|..+++|.++.++.+++.|.....  .|++.|.+   .+.|.......  ......+..+|.+.    +|.|+.
T Consensus       106 ~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~  182 (299)
T cd02510         106 ARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSL---HFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREW  182 (299)
T ss_pred             HHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccc---eeccccCCHHHhhhcCCCCCccCccccceeeEEEHHH
Confidence            346788999999999999999999976543  58899984   47776432222  12222345666653    899999


Q ss_pred             hhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          74 FALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        74 F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      |..+|+ |+++..+|+|+.+|++|
T Consensus       183 ~~~vGgfDe~~~~~~~ED~Dl~~R  206 (299)
T cd02510         183 FLELGGYDEGMDIWGGENLELSFK  206 (299)
T ss_pred             HHHhCCCCCcccccCchhHHHHHH
Confidence            999998 99999999999998776

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=92.97  E-value=0.0099  Score=43.73  Aligned_cols=32  Identities=22%  Similarity=0.086  Sum_probs=28.2

Q ss_pred             eeeeEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          65 VIELIRDDDFALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        65 ~i~~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      ..-+|+|+.|..+|+ |+....||+|+.||.+|
T Consensus       171 ~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~R  203 (281)
T PF10111_consen  171 SCFLINREDFLEIGGFDERFRGWGYEDIDFGYR  203 (281)
T ss_pred             eEEEEEHHHHHHhCCCCccccCCCcchHHHHHH
Confidence            444999999999999 99999999999998765

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=92.78  E-value=0.087  Score=38.59  Aligned_cols=52  Identities=50%  Similarity=0.883  Sum_probs=42.0

Q ss_pred             eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEE
Q psy3381          42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEV   95 (97)
Q Consensus        42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsf   95 (97)
                      +..+||+++++.+..++..+++|.+..++...+.+.+..  ....|+++|.+.+
T Consensus        96 ~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  147 (299)
T cd02510          96 VNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSS--GDARGGFDWSLHF  147 (299)
T ss_pred             cCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCC--CceeEEeccccee
Confidence            689999999999999999999999999998888877651  2256777776654

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases

Probab=92.43  E-value=0.0048  Score=37.91  Aligned_cols=31  Identities=26%  Similarity=0.203  Sum_probs=25.1

Q ss_pred             eeeEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          66 IELIRDDDFALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        66 i~~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      +-++.++.|..+++ |+.+..||||+.+|..|
T Consensus        23 ~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~R   54 (78)
T PF02709_consen   23 VFAISREDFEKVNGFDERFWGWGGEDDDLYNR   54 (78)
T ss_dssp             EEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHH
T ss_pred             EEEEeHHHHHHcCCCCccccccCccHHHHHHH
Confidence            44899999999998 99999999999887644

The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=82.47  E-value=0.15  Score=37.24  Aligned_cols=29  Identities=17%  Similarity=0.117  Sum_probs=26.0

Q ss_pred             eEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          68 LIRDDDFALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        68 ~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      ++.++.|..+++ |++...||||+.||+.|
T Consensus       117 ~~~k~~f~~VNGf~n~f~GWGgEDdd~~~R  146 (219)
T cd00899         117 ALTREQFRKVNGFSNAYWGWGGEDDDLYNR  146 (219)
T ss_pred             eeEHHHHHHhCCcCCcCccCCcchHHHHHH
Confidence            899999999988 99999999999988644

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
1xhb_A	472	The Crystal Structure Of Udp-Galnac: Polypeptide Al		6e-08
2ffu_A	501	Crystal Structure Of Human Ppgalnact-2 Complexed Wi		2e-06
2d7i_A	570	Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac		4e-06

>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1 Length = 472

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           GWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 130 GWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 179

>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp And Ea2 Length = 501

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 46  WLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSL 93
           WLEPLL+R+A D + VVSP+I++I  D+F  ++        GGF W+L
Sbjct: 163 WLEPLLERVAEDRTRVVSPIIDVINMDNF--QYVGASADLKGGFDWNL 208

>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And Mn2+ Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSL 93
           V WL PLLDRIAR+  T+V P+I++I  DDF         ++ G F W +
Sbjct: 211 VNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMR-GAFDWEM 259

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	5e-12
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	2e-04
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	1e-10
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	5e-05
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	7e-10
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	1e-04

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score = 59.0 bits (142), Expect = 5e-12
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSL 93
             WLEPLL+R+A D + VVSP+I++I  D+F            GGF W+L
Sbjct: 161 EHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASAD--LKGGFDWNL 208

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 1   MDRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLEPLLDRIARDN 58
           ++R+A D + VV P+IDV++  + ++    +   G     L      W     ++     
Sbjct: 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVF---KWDYMTPEQRRSRQ 224

Query: 59  STVVSPV-IELIRDDDFALRFCRPQFIQIGGFSWSLEV 95
              V+P+   +I    F +   +  F ++G +   ++V
Sbjct: 225 GNPVAPIKTPMIAGGLFVMD--KFYFEELGKYDMMMDV 260

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
            WL PLLDRIAR+  T+V P+I++I  DDF            G F W + 
Sbjct: 212 NWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDA-MRGAFDWEMY 260

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 1   MDRIARDSSAVVCPVIDVLDDSSLEFHFRDST---GILKEALAC--IGVGWLEPLLDRIA 55
           +DRIAR+   +VCP+IDV+D     +  +      G     +    I +       D   
Sbjct: 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSD 277

Query: 56  RDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEV 95
              S V++  +  +          R  F ++GG+   LE+
Sbjct: 278 PFESPVMAGGLFAVD---------RKWFWELGGYDPGLEI 308

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score = 52.8 bits (126), Expect = 7e-10
 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           GWLEPLL RI  D  TVV P+I++I DD F            GGF+W L  R
Sbjct: 130 GWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDM--TYGGFNWKLNFR 179

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 1   MDRIARDSSAVVCPVIDVLDDSSLEFHFRD--STGILKEALACIGVGWLEPLLDRIARDN 58
           + RI  D   VVCP+IDV+ D + E+      + G     L        +  +DR   D 
Sbjct: 136 LARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR 195

Query: 59  STVV-SPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           +  V +P +             R  F +IG +   +++ 
Sbjct: 196 TLPVRTPTMAG-----GLFSIDRDYFQEIGTYDAGMDIW 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	98.67
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	98.6
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	98.57
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	94.64
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	94.45
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	91.86

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=98.67  E-value=3.8e-09  Score=80.46  Aligned_cols=92  Identities=28%  Similarity=0.433  Sum_probs=71.0

Q ss_pred             cccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeecc--ch-hhhhhcC-CCeEecceee----eEcc
Q psy3381           2 DRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLE--PL-LDRIARD-NSTVVSPVIE----LIRD   71 (97)
Q Consensus         2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~--pl-l~ri~~~-~~~i~sP~i~----~Id~   71 (97)
                      +.+++++..+++|.++.++.++++|.....  .|+|+|.+   .+.|..  +. ..+...+ ..++.+|.+.    +|.|
T Consensus       137 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr  213 (472)
T 1xhb_A          137 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKL---NFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDR  213 (472)
T ss_dssp             HHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTC---CEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEH
T ss_pred             HHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccc---eeecccCCHHHHhcccCCCCCcccCccccceeEEEEH
Confidence            456789999999999999999999976433  38999984   577753  21 1112222 3368888876    8999


Q ss_pred             cchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          72 DDFALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        72 ~~F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      +.|+.+|+ |+++..||+|+++|++|
T Consensus       214 ~~~~~iGgfde~~~~~g~ED~dl~~R  239 (472)
T 1xhb_A          214 DYFQEIGTYDAGMDIWGGENLEISFR  239 (472)
T ss_dssp             HHHHHTTSCCTTSCTTCCCCSHHHHH
T ss_pred             HHHHHcCCCCCcccccCchhHHHHHH
Confidence            99999998 99999999999999876

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=98.60  E-value=4e-09  Score=83.04  Aligned_cols=92  Identities=23%  Similarity=0.362  Sum_probs=72.3

Q ss_pred             cccccCCCeEEeceEEEEeCCCceEEec-C--CcceEecccceeeeeeccchhh-hhhcCCCeEecceee----eEcccc
Q psy3381           2 DRIARDSSAVVCPVIDVLDDSSLEFHFR-D--STGILKEALACIGVGWLEPLLD-RIARDNSTVVSPVIE----LIRDDD   73 (97)
Q Consensus         2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~-~--~~G~f~w~l~~~~~~Wl~pll~-ri~~~~~~i~sP~i~----~Id~~~   73 (97)
                      +++++++..+|+|.++.++.+++.|... .  ..|.|+|.+   .++|++.... .......++.+|.+.    +|.|+.
T Consensus       219 ~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~  295 (570)
T 2d7i_A          219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEM---YYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKW  295 (570)
T ss_dssp             HHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTC---CEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHH
T ss_pred             HHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccc---cccccccchhhhccCCCcceecccccceEEEEEHHH
Confidence            4577899999999999999999999763 2  238899994   4777653322 233334567888875    899999


Q ss_pred             hhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          74 FALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        74 F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      |..+|+ |+++..||+|+++|++|
T Consensus       296 ~~~iGgfDe~~~~~g~ED~dl~~R  319 (570)
T 2d7i_A          296 FWELGGYDPGLEIWGGEQYEISFK  319 (570)
T ss_dssp             HHHTTSSCTTCCSSSSHHHHHHHH
T ss_pred             HHhcCCCCCcccccCcchHHHHHH
Confidence            999998 99999999999998876

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=98.57  E-value=5.9e-09  Score=80.26  Aligned_cols=92  Identities=21%  Similarity=0.274  Sum_probs=70.9

Q ss_pred             cccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeecc-chhh---hhhcCCCeEecceee----eEcc
Q psy3381           2 DRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLE-PLLD---RIARDNSTVVSPVIE----LIRD   71 (97)
Q Consensus         2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~-pll~---ri~~~~~~i~sP~i~----~Id~   71 (97)
                      +++++++..+|+|+++.++.++|.|.....  .|+|.|.+   .+.|.. +...   +......++.+|.+.    +|.|
T Consensus       169 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr  245 (501)
T 2ffu_A          169 ERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNL---VFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDK  245 (501)
T ss_dssp             HHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTC---CEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEH
T ss_pred             HHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecC---CCccccCCHHHHhhccCCCCCcccCccccceEEEEEH
Confidence            456788999999999999999999976443  38899984   467743 2211   111333468888875    9999


Q ss_pred             cchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          72 DDFALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        72 ~~F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      +.|..+|+ |+++..||+|+++|++|
T Consensus       246 ~~~~~iGgfde~~~~~g~ED~dl~~R  271 (501)
T 2ffu_A          246 FYFEELGKYDMMMDVWGGENLEISFR  271 (501)
T ss_dssp             HHHHHTTCCCTTCCSSSSHHHHHHHH
T ss_pred             HHHHHhCCCCccccccCcchHHHHHH
Confidence            99999998 99999999999998765

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=94.64  E-value=0.016  Score=43.66  Aligned_cols=53  Identities=47%  Similarity=0.884  Sum_probs=44.4

Q ss_pred             eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEEe
Q psy3381          42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsfr   96 (97)
                      +..+||+++++.+..++..+++|.++.++.+.|++.+.  +....|+++|.+.|+
T Consensus       127 ~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  179 (472)
T 1xhb_A          127 CTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAG--SDMTYGGFNWKLNFR  179 (472)
T ss_dssp             ECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECC--CTTEEEEECTTCCEE
T ss_pred             eCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccC--CCcccceeeccceee
Confidence            78899999999999999999999999999999988654  245688888866553

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=94.45  E-value=0.015  Score=44.33  Aligned_cols=52  Identities=42%  Similarity=0.756  Sum_probs=43.9

Q ss_pred             eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEE
Q psy3381          42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEV   95 (97)
Q Consensus        42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsf   95 (97)
                      +..+||+++++.+..++..+++|.++.|+.+.|.+.+.  .....|+++|.+.|
T Consensus       159 ~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  210 (501)
T 2ffu_A          159 CNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGA--SADLKGGFDWNLVF  210 (501)
T ss_dssp             ECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECB--CSSEEEEECTTCCE
T ss_pred             cCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecC--CcccceEeeecCCC
Confidence            68899999999999998889999999999999998765  23467888887654

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=91.86  E-value=0.075  Score=41.54  Aligned_cols=52  Identities=42%  Similarity=0.773  Sum_probs=43.1

Q ss_pred             eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhcc-CCCCceeEEEeeEEEE
Q psy3381          42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFC-RPQFIQIGGFSWSLEV   95 (97)
Q Consensus        42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~-d~g~~~~Gg~nwelsf   95 (97)
                      +..+||+++++.+..++..+++|.++.++.+.|.+.+. .  ....|+++|.+.+
T Consensus       209 ~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  261 (570)
T 2d7i_A          209 ANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAG--DAMRGAFDWEMYY  261 (570)
T ss_dssp             ECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTT--SSCEEEECTTCCE
T ss_pred             ccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccC--Ccccccccccccc
Confidence            68899999999999999999999999999999988663 2  2357888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	98.35
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	90.37

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=3.6e-08  Score=69.63  Aligned_cols=91  Identities=29%  Similarity=0.448  Sum_probs=69.0

Q ss_pred             ccccCCCeEEeceEEEEeCCCceEEecCCc--ceEecccceeeeeecc-chhh--hhhcC-CCeEecceee----eEccc
Q psy3381           3 RIARDSSAVVCPVIDVLDDSSLEFHFRDST--GILKEALACIGVGWLE-PLLD--RIARD-NSTVVSPVIE----LIRDD   72 (97)
Q Consensus         3 ri~~~~~~vv~PvID~Id~~tf~~~~~~~~--G~f~w~l~~~~~~Wl~-pll~--ri~~~-~~~i~sP~i~----~Id~~   72 (97)
                      .+++++..+++|.++.|+.++++|......  |.|.|.+   .+.|.. +...  ....+ ..++.+|.+.    .|.|+
T Consensus       131 ~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~  207 (328)
T d1xhba2         131 RIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKL---NFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD  207 (328)
T ss_dssp             HHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTC---CEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred             HHhcCCCeEEecceeeeccCceeeccCCccccccccccc---cccccccchhhhhccccccccccccceecceeeeeeHH
Confidence            467889999999999999999999875443  8899984   466653 2222  22222 2346666664    78999


Q ss_pred             chhhhcc-CCCCceeEEEeeEEEEe
Q psy3381          73 DFALRFC-RPQFIQIGGFSWSLEVR   96 (97)
Q Consensus        73 ~F~~~g~-d~g~~~~Gg~nwelsfr   96 (97)
                      .|..+|+ |+++..+|||+++|++|
T Consensus       208 ~f~~vGgfDe~~~~~g~ED~Dl~~R  232 (328)
T d1xhba2         208 YFQEIGTYDAGMDIWGGENLEISFR  232 (328)
T ss_dssp             HHHHTTSCCTTSCTTCCCCSHHHHH
T ss_pred             HHHHhCCCCCCCcCcCchHHHHHHH
Confidence            9999999 99999999999998775

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.37  E-value=0.055  Score=36.82  Aligned_cols=52  Identities=46%  Similarity=0.871  Sum_probs=43.4

Q ss_pred             eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEE
Q psy3381          42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEV   95 (97)
Q Consensus        42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsf   95 (97)
                      +..+||+.+++.+..++..+++|.++.|+.+++.+.+.  ....+|+++|.+.+
T Consensus       120 ~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~  171 (328)
T d1xhba2         120 CTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAG--SDMTYGGFNWKLNF  171 (328)
T ss_dssp             ECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECC--CTTEEEEECTTCCE
T ss_pred             cChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccC--Cccccccccccccc
Confidence            68899999999999999999999999999999998875  24567888776544