Psyllid ID: psy3430

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT
Secondary Structure (PSIPRED)
cEEccccccccccccccEEEEEEcccEEcccccccEEEEEcccccccEEEEEccccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEccccccccccccEEEEEEccccccEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
mlasgklppdalpgdlagqdcvlglefsgrdtkgrRVMGLVAARSLATtvladpsflwevpakwtleeastipVVYATAYYSLIVrgkmrpgesllvhagaggLGQAAISIALHMGCTVYT
Flexible Loop (DISEMBL)
mlasgklppdalpgdlAGQDCVLGLEfsgrdtkgrRVMGLVAARSlattvladpsfLWEVPAKwtleeastipvVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT
Low Complexity Region (SEG)
MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT
Disordered region (IsUnstruct)
****************AGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY*
Disordered Region (DISOPRED)
MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT
Disordered Region (DISEMBL)
********PDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT
Disordered Region (DISPRO)
*LASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
P49327	2511	Fatty acid synthase OS=Ho	yes	N/A	1.0	0.048	0.661	2e-45
P12785	2505	Fatty acid synthase OS=Ra	yes	N/A	1.0	0.048	0.669	4e-45
P19096	2504	Fatty acid synthase OS=Mu	yes	N/A	1.0	0.048	0.661	4e-44
P12276	2512	Fatty acid synthase OS=Ga	yes	N/A	0.991	0.047	0.666	7e-44
Q71SP7	2513	Fatty acid synthase OS=Bo	yes	N/A	0.958	0.046	0.594	2e-38
B2HIL7	2104	Phenolphthiocerol synthes	no	N/A	0.917	0.052	0.353	3e-11
Q54KU3	2380	Probable polyketide synth	yes	N/A	0.785	0.039	0.355	1e-10
Q7TXK8	2112	Phenolphthiocerol synthes	no	N/A	0.578	0.033	0.385	7e-10
P96285	1616	Putative inactive phenolp	no	N/A	0.561	0.042	0.397	7e-10
Q558Y6	2998	Probable polyketide synth	no	N/A	0.909	0.036	0.325	2e-09

>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 105/121 (86%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL PDA+PG    QD +LG+EFSGRD  G+RVMGLV A+ LAT+VL  P FLW+V
Sbjct: 1577 MLATGKLSPDAIPGKWTSQDSLLGMEFSGRDASGKRVMGLVPAKGLATSVLLSPDFLWDV 1636

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+ WTLEEA+++PVVY+TAYY+L+VRG++RPGE+LL+H+G+GG+GQAAI+IAL +GC V+
Sbjct: 1637 PSNWTLEEAASVPVVYSTAYYALVVRGRVRPGETLLIHSGSGGVGQAAIAIALSLGCRVF 1696

Query: 121  T 121
            T
Sbjct: 1697 T 1697

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 4

>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3

 Score =  179 bits (455), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 104/121 (85%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL PDA+PG  A +DC+LG+EFSGRD  GRRVMGLV A  LAT+VL  P FLW+V
Sbjct: 1571 MLATGKLSPDAIPGKWASRDCMLGMEFSGRDKCGRRVMGLVPAEGLATSVLLSPDFLWDV 1630

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+ WTLEEA+++PVVY TAYYSL+VRG+++ GE++L+H+G+GG+GQAAISIAL +GC V+
Sbjct: 1631 PSSWTLEEAASVPVVYTTAYYSLVVRGRIQHGETVLIHSGSGGVGQAAISIALSLGCRVF 1690

Query: 121  T 121
            T
Sbjct: 1691 T 1691

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 103/121 (85%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL PDA+PG  A +DC+LG+EFSGRD  GRRVMGLV A  LAT+VL    FLW+V
Sbjct: 1570 MLATGKLSPDAIPGKWASRDCMLGMEFSGRDRCGRRVMGLVPAEGLATSVLLSSDFLWDV 1629

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+ WTLEEA+++PVVY TAYYSL+VRG+++ GE++L+H+G+GG+GQAAISIAL +GC V+
Sbjct: 1630 PSSWTLEEAASVPVVYTTAYYSLVVRGRIQRGETVLIHSGSGGVGQAAISIALSLGCRVF 1689

Query: 121  T 121
            T
Sbjct: 1690 T 1690

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

>sp|P12276|FAS_CHICK Fatty acid synthase OS=Gallus gallus GN=FASN PE=1 SV=5

 Score =  175 bits (444), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 100/120 (83%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL PDA+PG+   Q C+LG+EFSGRD  GRRVMGL+ A+ LAT V  D  FLWEV
Sbjct: 1581 MLATGKLSPDAIPGNWTLQQCMLGMEFSGRDLAGRRVMGLLPAKGLATVVDCDKRFLWEV 1640

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P  WTLEEA+++PVVYATAYY+L+VRG M+ GES+L+H+G+GG+GQAAI+IAL MGC V+
Sbjct: 1641 PENWTLEEAASVPVVYATAYYALVVRGGMKKGESVLIHSGSGGVGQAAIAIALSMGCRVF 1700

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 96/116 (82%)

Query: 5    GKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKW 64
            G+  P   P + A ++C+LG+EFSGRD  G+RVMGLV A  LAT+ L   SFLW+VP+ W
Sbjct: 1583 GQAVPRRHPRNWASRNCLLGMEFSGRDASGKRVMGLVPAEGLATSTLVPQSFLWDVPSNW 1642

Query: 65   TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            TLEEA+++PVVY+TAYY+L+VRG+M+PGE++L+H+G+GG+GQAAI+IAL +GC V+
Sbjct: 1643 TLEEAASVPVVYSTAYYALMVRGRMQPGETVLIHSGSGGVGQAAIAIALSLGCRVF 1698

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

>sp|B2HIL7|MSL7_MYCMM Phenolphthiocerol synthesis polyketide synthase type I Pks15/1 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pks15/1 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 5    GKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKW 64
            G+ PP  L  + AG    +G + SG    G  VMG +      + V  D   +  +P  W
Sbjct: 1445 GEAPP--LGAEGAGVVLEVGPQVSGV-AVGDSVMGFLGGAGPLSVV--DQQLITRMPQGW 1499

Query: 65   TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            +  +A+ +PVV+ TA + L    K++PGES+L+HAG GG+G AA+ +A H G  ++
Sbjct: 1500 SFAQAAAVPVVFLTALFGLQDLAKIQPGESVLIHAGTGGVGMAAVQLARHWGVEIF 1555

Catalyzes the elongation by iterative transfer of p-hydroxybenzoyl group from FadD22 (pHBA-S-FAdD22) to form p-hydroxyphenylalkanoate (pHPA) intermediates during phenolphthiocerol (PPOL) biosynthesis. PPOL is an important intermediate in the biosynthesis of phenolic glycolipid (mycosid B).

Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q54KU3|PKS25_DICDI Probable polyketide synthase 25 OS=Dictyostelium discoideum GN=pks25 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 12/107 (11%)

Query: 16   LAGQDCVLGLEFSGRDTK-----------GRRVMGLVAARSLATTVLADPSFLWEVPAKW 64
            L G     GL+FSGR ++           G  V G+  + S ++ ++ D       P+K 
Sbjct: 1720 LKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTS-SSHIIIDSMHACHKPSKI 1778

Query: 65   TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISI 111
            T  +A++IP VYAT+ +SL   G +R GES+L+H+G+GG+G +A+ I
Sbjct: 1779 THVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEI 1825

Probable polyketide synthase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q7TXK8|MSL7_MYCBO Phenolphthiocerol synthesis polyketide synthase type I Pks15/1 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=pks15/1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%)

Query: 51   LADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAIS 110
            + D   +  VP  W+  +A+ +PVV+ TA+Y L    +++ GES+L+HAG GG+G AA+ 
Sbjct: 1492 VVDQQLVTRVPQGWSFAQAAAVPVVFLTAWYGLADLAEIKAGESVLIHAGTGGVGMAAVQ 1551

Query: 111  IALHMGCTVY 120
            +A   G  V+
Sbjct: 1552 LARQWGVEVF 1561

Catalyzes the elongation by iterative transfer of p-hydroxybenzoyl group from FadD22 (pHBA-S-FAdD22) to form p-hydroxyphenylalkanoate (pHPA) intermediates during phenolphthiocerol (PPOL) biosynthesis. PPOL is an important intermediate in the biosynthesis of phenolic glycolipid (mycosid B).

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|P96285|PKS1_MYCTU Putative inactive phenolphthiocerol synthesis polyketide synthase type I Pks1 OS=Mycobacterium tuberculosis GN=pks1 PE=3 SV=4

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%)

Query: 53   DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIA 112
            D   +  VP  W+  +A+ +PVV+ TA+Y L    +++ GES+L+HAG GG+G AA+ +A
Sbjct: 998  DQQLVTRVPQGWSFAQAAAVPVVFLTAWYGLADLAEIKAGESVLIHAGTGGVGMAAVQLA 1057

Query: 113  LHMGCTVY 120
               G  V+
Sbjct: 1058 RQWGVEVF 1065

May play a role in phthiocerol biosynthesis.

Mycobacterium tuberculosis (taxid: 1773)

>sp|Q558Y6|PKS14_DICDI Probable polyketide synthase 14 OS=Dictyostelium discoideum GN=pks14 PE=3 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 13/123 (10%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSG---------RDTK-GRRVMGLVAARSLATTV 50
            +L  G LPP+ +  +    D   GLEFSG          D K G ++ G +   + +T +
Sbjct: 1875 LLYCGLLPPEMVSHNNDINDPEFGLEFSGIVSAIGSNINDFKIGDQIYG-IGYDTTSTHI 1933

Query: 51   LADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG--KMRPGESLLVHAGAGGLGQAA 108
            + D + ++  P      EA++IP VY T+Y+S+   G  K++  ES+L+H+G+GG+G +A
Sbjct: 1934 IVDYNQIYHKPTNINHIEAASIPGVYLTSYHSIFNVGNLKIKRNESILIHSGSGGIGLSA 1993

Query: 109  ISI 111
            ++I
Sbjct: 1994 LNI 1996

Probable polyketide synthase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
328705168	2113	PREDICTED: fatty acid synthase-like [Acy	1.0	0.057	0.826	5e-56
328705164	2389	PREDICTED: fatty acid synthase-like isof	1.0	0.050	0.834	7e-56
328705166	2395	PREDICTED: fatty acid synthase-like isof	1.0	0.050	0.834	7e-56
189233593	3189	PREDICTED: similar to fatty acid synthas	1.0	0.037	0.801	2e-55
270014917	2383	hypothetical protein TcasGA2_TC011522 [T	1.0	0.050	0.801	9e-55
242023225	2381	fatty acid synthase, putative [Pediculus	1.0	0.050	0.785	3e-54
345479260	2408	PREDICTED: fatty acid synthase-like isof	1.0	0.050	0.785	1e-52
345479258	2398	PREDICTED: fatty acid synthase-like isof	1.0	0.050	0.785	1e-52
374092388	2392	fatty acid synthase [Bombus lucorum]	1.0	0.050	0.727	2e-51
340718780	2392	PREDICTED: fatty acid synthase-like [Bom	1.0	0.050	0.727	2e-51

>gi|328705168|ref|XP_001945287.2| PREDICTED: fatty acid synthase-like [Acyrthosiphon pisum]

 Score =  221 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 100/121 (82%), Positives = 113/121 (93%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLASGKLPPDALPGDLAGQDC+LGLEFSGR++KG+R+MG++AA  LATTVLADP FLWEV
Sbjct: 1481 MLASGKLPPDALPGDLAGQDCILGLEFSGRNSKGKRIMGMLAATGLATTVLADPKFLWEV 1540

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+KWTLEEASTIPVVY TAYY+L VRG+M+PG SLLVHAG GG+GQAAI+IALHMG TVY
Sbjct: 1541 PSKWTLEEASTIPVVYGTAYYALCVRGQMKPGNSLLVHAGTGGVGQAAIAIALHMGVTVY 1600

Query: 121  T 121
            T
Sbjct: 1601 T 1601

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705164|ref|XP_003242717.1| PREDICTED: fatty acid synthase-like isoform 2 [Acyrthosiphon pisum]

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 101/121 (83%), Positives = 113/121 (93%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLASGKLPPDALPGDLAGQDC+LGLEFSGR++KG RVMG++AAR LAT+VLADP FLWEV
Sbjct: 1479 MLASGKLPPDALPGDLAGQDCILGLEFSGRNSKGTRVMGMLAARGLATSVLADPGFLWEV 1538

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+KWTLEEASTIPVVY TAYY+L VRG+M+PG SLLVHAG GG+GQAAI+IALHMG TVY
Sbjct: 1539 PSKWTLEEASTIPVVYGTAYYALCVRGRMKPGNSLLVHAGTGGVGQAAIAIALHMGVTVY 1598

Query: 121  T 121
            T
Sbjct: 1599 T 1599

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705166|ref|XP_001945190.2| PREDICTED: fatty acid synthase-like isoform 1 [Acyrthosiphon pisum]

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 101/121 (83%), Positives = 113/121 (93%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLASGKLPPDALPGDLAGQDC+LGLEFSGR++KG RVMG++AAR LAT+VLADP FLWEV
Sbjct: 1485 MLASGKLPPDALPGDLAGQDCILGLEFSGRNSKGTRVMGMLAARGLATSVLADPGFLWEV 1544

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+KWTLEEASTIPVVY TAYY+L VRG+M+PG SLLVHAG GG+GQAAI+IALHMG TVY
Sbjct: 1545 PSKWTLEEASTIPVVYGTAYYALCVRGRMKPGNSLLVHAGTGGVGQAAIAIALHMGVTVY 1604

Query: 121  T 121
            T
Sbjct: 1605 T 1605

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233593|ref|XP_970417.2| PREDICTED: similar to fatty acid synthase [Tribolium castaneum]

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/121 (80%), Positives = 113/121 (93%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKLPPDALPGDLAGQDC+LGLEFSGRD+KGRRVMG+V ARSLATTV+AD  FLWEV
Sbjct: 2277 MLATGKLPPDALPGDLAGQDCILGLEFSGRDSKGRRVMGMVEARSLATTVIADTGFLWEV 2336

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P KW+LEEA+TIPVVY T+YY+LIVRG M+PGES+L+HAG GG+GQA+I+IALHMGC V+
Sbjct: 2337 PEKWSLEEAATIPVVYGTSYYALIVRGGMKPGESILIHAGTGGVGQASIAIALHMGCKVF 2396

Query: 121  T 121
            T
Sbjct: 2397 T 2397

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014917|gb|EFA11365.1| hypothetical protein TcasGA2_TC011522 [Tribolium castaneum]

 Score =  217 bits (552), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 97/121 (80%), Positives = 113/121 (93%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKLPPDALPGDLAGQDC+LGLEFSGRD+KGRRVMG+V ARSLATTV+AD  FLWEV
Sbjct: 1471 MLATGKLPPDALPGDLAGQDCILGLEFSGRDSKGRRVMGMVEARSLATTVIADTGFLWEV 1530

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P KW+LEEA+TIPVVY T+YY+LIVRG M+PGES+L+HAG GG+GQA+I+IALHMGC V+
Sbjct: 1531 PEKWSLEEAATIPVVYGTSYYALIVRGGMKPGESILIHAGTGGVGQASIAIALHMGCKVF 1590

Query: 121  T 121
            T
Sbjct: 1591 T 1591

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023225|ref|XP_002432036.1| fatty acid synthase, putative [Pediculus humanus corporis] gi|212517394|gb|EEB19298.1| fatty acid synthase, putative [Pediculus humanus corporis]

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/121 (78%), Positives = 110/121 (90%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKLPPDALPGDLAGQDCVLGLEFSGR T G+RVMG+V AR LAT+VL DP FLWEV
Sbjct: 1476 MLATGKLPPDALPGDLAGQDCVLGLEFSGRVTSGKRVMGMVVARGLATSVLVDPEFLWEV 1535

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P  W+LEEA+T+PVVY+T+YY+LIVRG+M+PGE+LLVHAG GG+GQAAISIAL MGC V+
Sbjct: 1536 PNDWSLEEAATVPVVYSTSYYALIVRGRMKPGETLLVHAGTGGVGQAAISIALSMGCKVF 1595

Query: 121  T 121
            T
Sbjct: 1596 T 1596

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479260|ref|XP_001605059.2| PREDICTED: fatty acid synthase-like isoform 1 [Nasonia vitripennis]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/121 (78%), Positives = 113/121 (93%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL  DALPGDLA QDC+LGLEF+GRD+KGRRVMG+VAAR LATT+LADP F+WEV
Sbjct: 1491 MLATGKLNADALPGDLASQDCILGLEFAGRDSKGRRVMGMVAARGLATTLLADPGFMWEV 1550

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P KWTLE+A+TIPVVYAT+YY+L VRG MRPGES+L+HAG+GG+GQA+I+IALHMGCTV+
Sbjct: 1551 PDKWTLEQAATIPVVYATSYYALCVRGGMRPGESVLIHAGSGGVGQASIAIALHMGCTVF 1610

Query: 121  T 121
            T
Sbjct: 1611 T 1611

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479258|ref|XP_003423914.1| PREDICTED: fatty acid synthase-like isoform 2 [Nasonia vitripennis]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/121 (78%), Positives = 113/121 (93%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL  DALPGDLA QDC+LGLEF+GRD+KGRRVMG+VAAR LATT+LADP F+WEV
Sbjct: 1481 MLATGKLNADALPGDLASQDCILGLEFAGRDSKGRRVMGMVAARGLATTLLADPGFMWEV 1540

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P KWTLE+A+TIPVVYAT+YY+L VRG MRPGES+L+HAG+GG+GQA+I+IALHMGCTV+
Sbjct: 1541 PDKWTLEQAATIPVVYATSYYALCVRGGMRPGESVLIHAGSGGVGQASIAIALHMGCTVF 1600

Query: 121  T 121
            T
Sbjct: 1601 T 1601

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|374092388|gb|AEY83835.1| fatty acid synthase [Bombus lucorum]

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/121 (72%), Positives = 110/121 (90%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKLPPDALPG+LA QDC+LGLEFSGRD+KG+RVM +V AR LATTV+ADP F+W+V
Sbjct: 1479 MLATGKLPPDALPGNLATQDCILGLEFSGRDSKGQRVMAMVPARGLATTVIADPGFMWKV 1538

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P KW+LEEA+T+PV YAT+YY+L VRG M+PG+S+L+HAG+GG+GQA+ISIALH GC V+
Sbjct: 1539 PDKWSLEEAATVPVAYATSYYALCVRGHMKPGDSVLIHAGSGGVGQASISIALHAGCKVF 1598

Query: 121  T 121
            T
Sbjct: 1599 T 1599

Source: Bombus lucorum

Species: Bombus lucorum

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718780|ref|XP_003397841.1| PREDICTED: fatty acid synthase-like [Bombus terrestris] gi|363980846|gb|AEW43642.1| fatty acid synthase [Bombus terrestris]

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/121 (72%), Positives = 110/121 (90%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKLPPDALPG+LA QDC+LGLEFSGRD+KG+RVM +V AR LATTV+ADP F+W+V
Sbjct: 1479 MLATGKLPPDALPGNLATQDCILGLEFSGRDSKGQRVMAMVPARGLATTVIADPGFMWKV 1538

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P KW+LEEA+T+PV YAT+YY+L VRG M+PG+S+L+HAG+GG+GQA+ISIALH GC V+
Sbjct: 1539 PDKWSLEEAATVPVAYATSYYALCVRGHMKPGDSVLIHAGSGGVGQASISIALHAGCKVF 1598

Query: 121  T 121
            T
Sbjct: 1599 T 1599

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
ZFIN|ZDB-GENE-030131-7802	2514	fasn "fatty acid synthase" [Da	1.0	0.048	0.694	1.7e-42
UNIPROTKB|P49327	2511	FASN "Fatty acid synthase" [Ho	1.0	0.048	0.661	3.3e-41
UNIPROTKB|F1Q2F6	2518	FASN "Uncharacterized protein"	1.0	0.048	0.661	5.3e-41
RGD|620665	2505	Fasn "fatty acid synthase" [Ra	1.0	0.048	0.669	8.6e-41
UNIPROTKB|P12785	2505	Fasn "Fatty acid synthase" [Ra	1.0	0.048	0.669	8.6e-41
FB|FBgn0042627	2409	v(2)k05816 "v(2)k05816" [Droso	1.0	0.050	0.694	1.7e-40
FB|FBgn0027571	2544	CG3523 [Drosophila melanogaste	1.0	0.047	0.669	2.3e-40
MGI|MGI:95485	2504	Fasn "fatty acid synthase" [Mu	1.0	0.048	0.661	6.1e-40
UNIPROTKB|F1N8A8	2512	FASN "Fatty acid synthase" [Ga	0.991	0.047	0.666	4.4e-39
UNIPROTKB|P12276	2512	FASN "Fatty acid synthase" [Ga	0.991	0.047	0.666	4.4e-39

ZFIN|ZDB-GENE-030131-7802 fasn "fatty acid synthase" [Danio rerio (taxid:7955)]

 Score = 466 (169.1 bits), Expect = 1.7e-42, P = 1.7e-42
 Identities = 84/121 (69%), Positives = 107/121 (88%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKLPPDA+PGD+A Q C+LG+EFSGRD  GRRVMGL+ A+ LAT V AD  FLW+V
Sbjct:  1586 MLATGKLPPDAIPGDVALQQCMLGMEFSGRDPSGRRVMGLLPAKGLATCVDADKRFLWDV 1645

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P+ WTLE+A+++PVVYATAYYSL+VRG++RPGES+L+H+G+GG+GQAAI+IAL M C V+
Sbjct:  1646 PSSWTLEQAASVPVVYATAYYSLVVRGRLRPGESVLIHSGSGGVGQAAIAIALSMRCRVF 1705

Query:   121 T 121
             T
Sbjct:  1706 T 1706

GO:0016297 "acyl-[acyl-carrier-protein

GO:0016740 "transferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004312 "fatty acid synthase activity" evidence=IEA

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0008152 "metabolic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0004314 "[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|P49327 FASN "Fatty acid synthase" [Homo sapiens (taxid:9606)]

 Score = 454 (164.9 bits), Expect = 3.3e-41, P = 3.3e-41
 Identities = 80/121 (66%), Positives = 105/121 (86%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKL PDA+PG    QD +LG+EFSGRD  G+RVMGLV A+ LAT+VL  P FLW+V
Sbjct:  1577 MLATGKLSPDAIPGKWTSQDSLLGMEFSGRDASGKRVMGLVPAKGLATSVLLSPDFLWDV 1636

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P+ WTLEEA+++PVVY+TAYY+L+VRG++RPGE+LL+H+G+GG+GQAAI+IAL +GC V+
Sbjct:  1637 PSNWTLEEAASVPVVYSTAYYALVVRGRVRPGETLLIHSGSGGVGQAAIAIALSLGCRVF 1696

Query:   121 T 121
             T
Sbjct:  1697 T 1697

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0047451 "3-hydroxyoctanoyl-[acyl-carrier-protein

GO:0005739 "mitochondrion" evidence=IEA

GO:0006084 "acetyl-CoA metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0042587 "glycogen granule" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0004312 "fatty acid synthase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0015939 "pantothenate metabolic process" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0031325 "positive regulation of cellular metabolic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1Q2F6 FASN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 452 (164.2 bits), Expect = 5.3e-41, P = 5.3e-41
 Identities = 80/121 (66%), Positives = 104/121 (85%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKL PDA+PG  A +DC+LG+EFSGRD  G+RVMGLV A  LAT+VL  P FLW+V
Sbjct:  1582 MLATGKLSPDAIPGKWAARDCMLGMEFSGRDASGKRVMGLVPAEGLATSVLLSPDFLWDV 1641

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P+ WTLEEA+T+PVVY TAYYSL+VRG+++ GE++L+H+G+GG+GQAAI+IAL +GC V+
Sbjct:  1642 PSSWTLEEAATVPVVYTTAYYSLVVRGRVQRGETVLIHSGSGGVGQAAIAIALSLGCRVF 1701

Query:   121 T 121
             T
Sbjct:  1702 T 1702

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004313 "[acyl-carrier-protein

GO:0000166 "nucleotide binding" evidence=IEA

RGD|620665 Fasn "fatty acid synthase" [Rattus norvegicus (taxid:10116)]

 Score = 450 (163.5 bits), Expect = 8.6e-41, P = 8.6e-41
 Identities = 81/121 (66%), Positives = 104/121 (85%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKL PDA+PG  A +DC+LG+EFSGRD  GRRVMGLV A  LAT+VL  P FLW+V
Sbjct:  1571 MLATGKLSPDAIPGKWASRDCMLGMEFSGRDKCGRRVMGLVPAEGLATSVLLSPDFLWDV 1630

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P+ WTLEEA+++PVVY TAYYSL+VRG+++ GE++L+H+G+GG+GQAAISIAL +GC V+
Sbjct:  1631 PSSWTLEEAASVPVVYTTAYYSLVVRGRIQHGETVLIHSGSGGVGQAAISIALSLGCRVF 1690

Query:   121 T 121
             T
Sbjct:  1691 T 1691

GO:0004312 "fatty acid synthase activity" evidence=IMP;IDA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006084 "acetyl-CoA metabolic process" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IMP

GO:0008144 "drug binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=TAS

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0042470 "melanosome" evidence=IEA

GO:0042587 "glycogen granule" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0047451 "3-hydroxyoctanoyl-[acyl-carrier-protein

GO:0070402 "NADPH binding" evidence=IDA

GO:0071353 "cellular response to interleukin-4" evidence=ISO

UNIPROTKB|P12785 Fasn "Fatty acid synthase" [Rattus norvegicus (taxid:10116)]

 Score = 450 (163.5 bits), Expect = 8.6e-41, P = 8.6e-41
 Identities = 81/121 (66%), Positives = 104/121 (85%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKL PDA+PG  A +DC+LG+EFSGRD  GRRVMGLV A  LAT+VL  P FLW+V
Sbjct:  1571 MLATGKLSPDAIPGKWASRDCMLGMEFSGRDKCGRRVMGLVPAEGLATSVLLSPDFLWDV 1630

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P+ WTLEEA+++PVVY TAYYSL+VRG+++ GE++L+H+G+GG+GQAAISIAL +GC V+
Sbjct:  1631 PSSWTLEEAASVPVVYTTAYYSLVVRGRIQHGETVLIHSGSGGVGQAAISIALSLGCRVF 1690

Query:   121 T 121
             T
Sbjct:  1691 T 1691

GO:0042802 "identical protein binding" evidence=IPI

FB|FBgn0042627 v(2)k05816 "v(2)k05816" [Drosophila melanogaster (taxid:7227)]

 Score = 447 (162.4 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 84/121 (69%), Positives = 104/121 (85%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLASGKL  DALPGDLA QDCVLGLEF+GRD+ GRRVM +V A+SLAT  LA+ + LWEV
Sbjct:  1484 MLASGKLGVDALPGDLAYQDCVLGLEFAGRDSCGRRVMAMVTAKSLATNCLANRNLLWEV 1543

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P+KWT+E+AST+P VYAT YY+L+VRG+M+ GE +L+HAG+GG+GQAAIS+AL  G TV+
Sbjct:  1544 PSKWTMEQASTVPCVYATVYYALVVRGQMKEGERILIHAGSGGVGQAAISVALAHGLTVF 1603

Query:   121 T 121
             T
Sbjct:  1604 T 1604

GO:0004313 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0009058 "biosynthetic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

FB|FBgn0027571 CG3523 [Drosophila melanogaster (taxid:7227)]

 Score = 446 (162.1 bits), Expect = 2.3e-40, P = 2.3e-40
 Identities = 81/121 (66%), Positives = 102/121 (84%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             ML SGKL  DALPGDLA QDCVLGLEF+GRDT+GRRVM +V A+SLATT +A    +W++
Sbjct:  1610 MLTSGKLAADALPGDLAEQDCVLGLEFAGRDTQGRRVMAMVPAKSLATTCVASKRMMWQI 1669

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P KWT+EEAST+P VY+T YY+L+VRG+M+ GE +L+HAG+GG+GQAAIS+AL  G TV+
Sbjct:  1670 PEKWTMEEASTVPCVYSTVYYALVVRGQMKKGEKILIHAGSGGVGQAAISVALAHGLTVF 1729

Query:   121 T 121
             T
Sbjct:  1730 T 1730

GO:0004312 "fatty acid synthase activity" evidence=ISS

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004314 "[acyl-carrier-protein

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

MGI|MGI:95485 Fasn "fatty acid synthase" [Mus musculus (taxid:10090)]

 Score = 442 (160.7 bits), Expect = 6.1e-40, P = 6.1e-40
 Identities = 80/121 (66%), Positives = 103/121 (85%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKL PDA+PG  A +DC+LG+EFSGRD  GRRVMGLV A  LAT+VL    FLW+V
Sbjct:  1570 MLATGKLSPDAIPGKWASRDCMLGMEFSGRDRCGRRVMGLVPAEGLATSVLLSSDFLWDV 1629

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P+ WTLEEA+++PVVY TAYYSL+VRG+++ GE++L+H+G+GG+GQAAISIAL +GC V+
Sbjct:  1630 PSSWTLEEAASVPVVYTTAYYSLVVRGRIQRGETVLIHSGSGGVGQAAISIALSLGCRVF 1689

Query:   121 T 121
             T
Sbjct:  1690 T 1690

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004312 "fatty acid synthase activity" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0016297 "acyl-[acyl-carrier-protein

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0019171 "3-hydroxyacyl-[acyl-carrier-protein

GO:0042587 "glycogen granule" evidence=IDA

GO:0047451 "3-hydroxyoctanoyl-[acyl-carrier-protein

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=IDA

UNIPROTKB|F1N8A8 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)]

 Score = 434 (157.8 bits), Expect = 4.4e-39, P = 4.4e-39
 Identities = 80/120 (66%), Positives = 100/120 (83%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKL PDA+PG+   Q C+LG+EFSGRD  GRRVMGL+ A+ LAT V  D  FLWEV
Sbjct:  1581 MLATGKLSPDAIPGNWTLQQCMLGMEFSGRDLAGRRVMGLLPAKGLATVVDCDKRFLWEV 1640

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P  WTLEEA+++PVVYATAYY+L+VRG M+ GES+L+H+G+GG+GQAAI+IAL MGC V+
Sbjct:  1641 PENWTLEEAASVPVVYATAYYALVVRGGMKKGESVLIHSGSGGVGQAAIAIALSMGCRVF 1700

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

UNIPROTKB|P12276 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)]

 Score = 434 (157.8 bits), Expect = 4.4e-39, P = 4.4e-39
 Identities = 80/120 (66%), Positives = 100/120 (83%)

Query:     1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
             MLA+GKL PDA+PG+   Q C+LG+EFSGRD  GRRVMGL+ A+ LAT V  D  FLWEV
Sbjct:  1581 MLATGKLSPDAIPGNWTLQQCMLGMEFSGRDLAGRRVMGLLPAKGLATVVDCDKRFLWEV 1640

Query:    61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             P  WTLEEA+++PVVYATAYY+L+VRG M+ GES+L+H+G+GG+GQAAI+IAL MGC V+
Sbjct:  1641 PENWTLEEAASVPVVYATAYYALVVRGGMKKGESVLIHSGSGGVGQAAIAIALSMGCRVF 1700

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0047451 "3-hydroxyoctanoyl-[acyl-carrier-protein

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q71SP7	FAS_BOVIN	3, ., 1, ., 2, ., 1, 4	0.5948	0.9586	0.0461	yes	N/A
P12785	FAS_RAT	3, ., 1, ., 2, ., 1, 4	0.6694	1.0	0.0483	yes	N/A
P12276	FAS_CHICK	3, ., 1, ., 2, ., 1, 4	0.6666	0.9917	0.0477	yes	N/A
P19096	FAS_MOUSE	3, ., 1, ., 2, ., 1, 4	0.6611	1.0	0.0483	yes	N/A
P49327	FAS_HUMAN	3, ., 1, ., 2, ., 1, 4	0.6611	1.0	0.0481	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
smart00829	287	smart00829, PKS_ER, Enoylreductase	2e-45
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	9e-42
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	6e-27
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	2e-25
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	1e-23
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	8e-20
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-18
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	8e-18
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-17
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	3e-17
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	5e-17
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-16
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-14
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	3e-12
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	7e-12
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-11
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	4e-10
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	9e-09
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-08
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-08
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-08
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	4e-08
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	8e-08
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-07
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	2e-07
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-07
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	3e-07
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	6e-07
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	1e-06
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	1e-06
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-06
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-06
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	6e-06
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	7e-06
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	3e-05
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	3e-05
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	4e-05
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	4e-05
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-04
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-04
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	5e-04
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	6e-04
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	7e-04
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	0.001
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	0.001

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score =  147 bits (375), Expect = 2e-45
 Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 3/122 (2%)

Query: 1   MLASGKLP-PDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWE 59
           ++A G  P    L G+ AG    +G   +G    G RVMGL    + AT V+ D   +  
Sbjct: 14  LIALGLYPGEAVLGGECAGVVTRVGPGVTGLA-VGDRVMGLAPG-AFATRVVTDARLVVP 71

Query: 60  VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           +P  W+ EEA+T+PVV+ TAYY+L+   ++RPGES+L+HA AGG+GQAAI +A H+G  V
Sbjct: 72  IPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLARHLGAEV 131

Query: 120 YT 121
           + 
Sbjct: 132 FA 133

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score =  138 bits (351), Expect = 9e-42
 Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 11/118 (9%)

Query: 14  GDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAARSLATTVLADPSFLWEVPAK 63
           G L G +  LGLE SG  T+          G RVMGL A  + AT V  D   + ++P  
Sbjct: 22  GLLPGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL-APGAFATHVRVDARLVVKIPDS 80

Query: 64  WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
            + EEA+T+PV Y TAYY+L+   +++ GES+L+HA AGG+GQAAI +A H+G  V+ 
Sbjct: 81  LSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFA 138

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  101 bits (253), Expect = 6e-27
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 10/108 (9%)

Query: 22  VLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
           V G E +G              G RV+ L      A  V+   + ++ +P   + EEA+ 
Sbjct: 60  VPGSEVAGVVEAVGEGVTGFKVGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAA 119

Query: 72  IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           +PV Y TAY++L+ R +++PGE++LV   AGG+G AA+ +A  +G  V
Sbjct: 120 LPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARV 167

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 96.7 bits (242), Expect = 2e-25
 Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 18/124 (14%)

Query: 8   PPDALPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFL 57
           PP A          +LGLE +G              G RV  L+A    A  V+     L
Sbjct: 54  PPGASD--------ILGLEVAGVVVAVGPGVTGWKVGDRVCALLAGGGYAEYVVVPAGQL 105

Query: 58  WEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC 117
             VP   +L EA+ +P V+ TA+ +L   G ++ GE++L+H GA G+G AAI +A  +G 
Sbjct: 106 LPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA 165

Query: 118 TVYT 121
            V  
Sbjct: 166 RVIA 169

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 92.3 bits (230), Expect = 1e-23
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 10/102 (9%)

Query: 21  CVLGLEFSG---------RDTK-GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70
            V G E +G         +D K G RVMGL      A  V      ++ +P   + EEA+
Sbjct: 58  FVPGFECAGTVEAVGEGVKDFKVGDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAA 117

Query: 71  TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIA 112
             PV Y TAYY+L   G +RPG+S+LVH+ AGG+G AA  + 
Sbjct: 118 AFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLC 159

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 81.9 bits (203), Expect = 8e-20
 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%)

Query: 8   PPDA--LPG-DLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKW 64
           PP A  + G ++AG+   +G   S R   G RV  LVA    A  V      +  VP   
Sbjct: 54  PPGASDILGLEVAGEVVAVGEGVS-RWKVGDRVCALVAGGGYAEYVAVPAGQVLPVPEGL 112

Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           +L EA+ +P  + T + +L  RG ++ GE++L+H GA G+G  AI +A   G  V+T
Sbjct: 113 SLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFT 169

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 78.8 bits (195), Expect = 1e-18
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 13/114 (11%)

Query: 21  CVLGLEFSGRDTK----------GRRVMGLVAAR---SLATTVLADPSFLWEVPAKWTLE 67
            + G++F+G              G  V G +  +   +LA  V+A  S L + P   + E
Sbjct: 60  PIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFE 119

Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           EA+ +PV   TA  +L   GK++PG+ +L++  +GG+G  A+ IA  +G  V  
Sbjct: 120 EAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTG 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 76.6 bits (189), Expect = 8e-18
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 22  VLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
           +LGLE +G          R  +G RVM L+     A   +A    +  +P  +T EEA+ 
Sbjct: 61  ILGLEVAGYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAA 120

Query: 72  IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
           IP  + TA+  L   G ++ G+S+L+HAGA G+G AA  +A   G
Sbjct: 121 IPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYG 165

Length = 334

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGL 104
           SLA   + D   L   PA  ++ EA+ +P+V  TA+  L+ R  ++ G+++L+H GAGG+
Sbjct: 98  SLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGV 157

Query: 105 GQAAISIALHMGCTVYT 121
           G  A+ +A   G  VY 
Sbjct: 158 GHVAVQLAKAAGARVYA 174

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 75.0 bits (185), Expect = 3e-17
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 60  VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           +P   + EEA+  P+ + TA++ L+ R ++RPGE++LVH    G+G AAI IA   G TV
Sbjct: 135 IPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATV 194

Query: 120 YT 121
             
Sbjct: 195 IA 196

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 74.3 bits (183), Expect = 5e-17
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 13/113 (11%)

Query: 22  VLGLEFSG----------RDTKGRRVMGLVAAR---SLATTVLADPSFLWEVPAKWTLEE 68
           + G E +G              G RV  L         A  V+    +L  +P   + EE
Sbjct: 60  IPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEE 119

Query: 69  ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           A+ +P+   TA+ +L  R  ++PGE++LVH  AGG+G AAI +A  +G TV  
Sbjct: 120 AAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVA 172

Length = 326

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 33  KGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPG 92
            G  ++G       A  V+     L  +P   +LEEA+ +P   ATAY++L   G ++PG
Sbjct: 76  PGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPG 135

Query: 93  ESLLVHAGAGGLGQAAISIALHMGCTVY 120
           +++LV  GAGG+G  A  +A   G  V 
Sbjct: 136 DTVLVL-GAGGVGLLAAQLAKAAGARVI 162

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 22  VLGLEFSGR-------DTK---GRRVMGLVAAR---SLATTVLADPSFLWEVPAKWTLEE 68
           + G + +G         T    G  V G+       + A  V+     L   PA  + EE
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEE 121

Query: 69  ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           A+ +P+   TA+ +L   G ++ G+++L+H  AGG+G  A+ +A   G  V  
Sbjct: 122 AAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIA 174

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 47  ATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQ 106
           AT V      +   PA  + EEA  +PVV+ T   +   R  +  GE +L+    GG G 
Sbjct: 77  ATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTATGGTGL 135

Query: 107 AAISIALHMGCTVY 120
            A+ +A   G  +Y
Sbjct: 136 MAVQLARLKGAEIY 149

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 33  KGRRVM--GLVAARSLATT---VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG 87
            G RV    L   R   T    V+     L  +P   + E+ + + +   TAY +L  R 
Sbjct: 81  VGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRA 140

Query: 88  KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
             + GE++LVH G+G +G AA+ +A   G  V  
Sbjct: 141 GAKAGETVLVHGGSGAVGHAAVQLARWAGARVIA 174

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 28/136 (20%)

Query: 14  GDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAARSLATT--------VLADPS 55
           G +     +LG +F+G          R   G RV G V   +            V+AD  
Sbjct: 49  GFIPSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADAD 108

Query: 56  FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMR----------PGESLLVHAGAGGLG 105
              ++P   + EEA+T+PV   TA  +L  +  +            G+ +L+  G+  +G
Sbjct: 109 LTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVG 168

Query: 106 QAAISIALHMGCTVYT 121
             AI +A   G  V T
Sbjct: 169 TLAIQLAKLAGYKVIT 184

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 30/87 (34%), Positives = 42/87 (48%)

Query: 34  GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGE 93
           G RV  L      A  +  D  +L  VP      EA  + + Y TAY  L    K+  G+
Sbjct: 82  GDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQ 141

Query: 94  SLLVHAGAGGLGQAAISIALHMGCTVY 120
            +L+H  +GG+GQA + +AL  G  VY
Sbjct: 142 RVLIHGASGGVGQALLELALLAGAEVY 168

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 50  VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAI 109
           ++     L  VP      +A+       T Y++++  G+++PGE++LV  G GGLG  A+
Sbjct: 124 IVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLV-IGLGGLGLNAV 182

Query: 110 SIALHMGCTVY 120
            IA  MG  V 
Sbjct: 183 QIAKAMGAAVI 193

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 47  ATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQ 106
           A  V+    ++ ++P    L EA+ +     T Y +L  +  ++PG+ + V  GAGGLG 
Sbjct: 123 AEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVV-GAGGLGH 180

Query: 107 AAISIALHMGCTVY 120
            A+  A  MG  V 
Sbjct: 181 MAVQYAKAMGAEVI 194

Length = 339

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 61  PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           P   +  EA+ + + Y TAY +L+    +RPG+S+L+ A +  +G AAI IA   G TV
Sbjct: 114 PDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATV 172

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 22  VLGLEFSGRDTK----------GRRVM---GLVAARSLATTVLADPSFLWEVPAKWTLEE 68
           V G++ +G              G RV     L    S A   + D   +  +P   + EE
Sbjct: 59  VPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEE 118

Query: 69  ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           A+ +P    TAY +L  + ++  G ++L+  GAGG+G  A+ +A   G  V T
Sbjct: 119 AAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVIT 171

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           E   + V   TA  +L   G+M+ GE++LV A AGG GQ A+ +A   GC V
Sbjct: 116 EVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHV 167

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.7 bits (117), Expect = 8e-08
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 46  LATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLG 105
           LA  V+     L   P   + EEA+T+P    TA+ +L   G ++PG+++LV  G GG+ 
Sbjct: 115 LAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQ-GTGGVS 173

Query: 106 QAAISIALHMGCTV 119
             A+  A   G  V
Sbjct: 174 LFALQFAKAAGARV 187

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 78  TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           TAY+ L   GK +PGE+++V A AG +G     IA  +G  V
Sbjct: 132 TAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARV 173

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 43  ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAG 100
           A   AT ++  P  L       + EEA+   +V ATAY  L       ++PG+++L+   
Sbjct: 150 ALVQATQLMPKPKHL-------SWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGA 202

Query: 101 AGGLGQAAISIALHMG 116
           +GGLG  AI +A   G
Sbjct: 203 SGGLGSMAIQLARAAG 218

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 78  TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           TAY+ L+  G+ + GE+++V A AG +G     IA   GC V
Sbjct: 137 TAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRV 178

Length = 340

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 28  SGRDTKGRRV------MGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYY 81
            G  T G+RV      MG     S A   L     ++ + +  +  E + +P  Y TA+ 
Sbjct: 73  GGTFTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWG 132

Query: 82  SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
           SL     ++PG++LL+  G   +G AA+ +A  +G TV 
Sbjct: 133 SLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVT 171

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAG 102
           S A   L     L   P   T EEA+   +  ATAY  L+      ++PG+++L+   AG
Sbjct: 141 SFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPAAVKPGDNVLIWGAAG 200

Query: 103 GLGQAAISIALHMG 116
           GLG  A  +A   G
Sbjct: 201 GLGSYATQLARAGG 214

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 33  KGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPG 92
            G RV+GL A  + A  V     +L  +P   +  +A+T+PV   TA  +L  RG    G
Sbjct: 75  VGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRAL-RRGGPLLG 133

Query: 93  ESLLVHAGAGGLGQAAISIA 112
             +LV   +GG+G+ A+ +A
Sbjct: 134 RRVLVTGASGGVGRFAVQLA 153

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 60  VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           V +  +  E +T P  Y+TA  +++ R  +  GE++LV   +GG+G A + +A   G  V
Sbjct: 147 VNSPLSDVELATFPCSYSTAE-NMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIV 205

Query: 120 Y 120
            
Sbjct: 206 I 206

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 37  VMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLL 96
           ++G+V+    A  ++     L+++P   + E A+++PV   TAY++L     + PGE+++
Sbjct: 109 IIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-KTAGLGPGETVV 167

Query: 97  VHAGAGGLGQAAISIALHMGCTVY 120
           V   +G  G  A+ +A  MG  V 
Sbjct: 168 VFGASGNTGIFAVQLAKMMGAEVI 191

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 34  GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGE 93
           G RV       + A   +   S L ++P   + E A+ + +   TA+Y L     ++PG+
Sbjct: 79  GDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGD 138

Query: 94  SLLVHAGAGGLGQAAISIALHMGCTVYT 121
           ++LVHA AGG+G      A  +G TV  
Sbjct: 139 TVLVHAAAGGVGLLLTQWAKALGATVIG 166

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 76  YATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           +ATA+ +L+ + +++PGE + VH G GG+G +A+ IA  +G  V
Sbjct: 150 FATAFRALVHQARVKPGEWVAVH-GCGGVGLSAVMIASALGARV 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 22  VLGLEFS------GRDTK----GRRVMGLVAAR---SLATTVLADPSFLWEVPAKWTLEE 68
            LG + S      G   K    G  V G V      + A  V+   + + + P   + EE
Sbjct: 76  TLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEE 135

Query: 69  ASTIPVVYATAYYSLIVRGKMRP----GESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           A+++P    TA+ +L+  G + P    G+ +L+  G+GG+G  AI +    G  V T
Sbjct: 136 AASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTT 192

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 34  GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGE 93
           G+RV+ L    +    V+A    L  VP   + E+A+ + +   TA+  L    K+ PG+
Sbjct: 81  GQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGD 140

Query: 94  SLLVHAGAGGLGQAAISIALHMG 116
            ++ +A    +G+  I +A  +G
Sbjct: 141 WVIQNAANSAVGRMLIQLAKLLG 163

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 47  ATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQ 106
            T  +     L +VP     E+A+T+ V   TAY  L    K++PG+ ++ +     +GQ
Sbjct: 102 RTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQ 161

Query: 107 AAISIALHMGCTV 119
           A I +A  +G   
Sbjct: 162 AVIQLAKLLGIKT 174

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 61  PAKWTLEEASTIPVVYATAYYSLIVRGKMRP-----GESLLVHAGAGGLGQAAISIA 112
           P   +  EA+ +P+   TA+ +L  R  +       G++LL+  GAGG+G  AI +A
Sbjct: 114 PKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLA 170

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 50  VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAI 109
           V      L ++P   + E A+    V  TA ++L  R  ++ G+++LV    GG+G  AI
Sbjct: 122 VKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRAGVKKGDTVLVTGAGGGVGIHAI 180

Query: 110 SIALHMGCTVY 120
            +A  +G  V 
Sbjct: 181 QLAKALGARVI 191

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 35  RRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS-TIPVVYATAYYSLIVRGKMRPGE 93
           R+ +G  A    A  VL     L E+P   +LE A+ T P+  A A +++  R  +RPG+
Sbjct: 109 RKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAALTEPL--AVAVHAVAERSGIRPGD 166

Query: 94  SLLVHAGAGGLGQAAISIALHMGCTV 119
           +++V  G G +G  A  +A   G TV
Sbjct: 167 TVVV-FGPGPIGLLAAQVAKLQGATV 191

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 60  VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
           +P      E++ +     TAY +L     +RPGE++ V  G GG+G +AI +A   G
Sbjct: 156 LPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAV-IGVGGVGSSAIQLAKAFG 211

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 57  LWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
           L +VP   + E A  +P V    Y  L  R  ++ GE++LV    GG+G  AI +A  +G
Sbjct: 129 LVKVPPNVSDEGAVIVPCVTGMVYRGL-RRAGVKKGETVLVTGAGGGVGIHAIQVAKALG 187

Query: 117 CTV 119
             V
Sbjct: 188 AKV 190

Length = 334

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 21/111 (18%)

Query: 23  LGLEFSGRDTK-----------GRRVMGLV-----AARSLATTVLADPSFLWEV----PA 62
           LG ++SG   K           G  V G+         +L+  +L DP    +     P 
Sbjct: 62  LGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPE 121

Query: 63  KWTLEEASTIPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIA 112
             +LEEA+  P+V  TAY  L   G+   P   +LV  G+  +G+ AI +A
Sbjct: 122 NISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLA 172

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 34  GRRVMGLVAARS--LATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRP 91
           GRRV+          A   +AD   L  VP    LE A  +     TA   L+    + P
Sbjct: 84  GRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTP 142

Query: 92  GESLLVHAGAGGLGQAAISIALHMGCTV 119
           G+ +LV A AGGLG   + +A   G TV
Sbjct: 143 GDVVLVTAAAGGLGSLLVQLAKAAGATV 170

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 77  ATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
            TAY+ L+   K + GE+++V+  AG +G     IA   GC V
Sbjct: 129 LTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKV 171

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 34  GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGE 93
           G RV         A  V+   + L  +P     E A+   +  ATA    +   + R GE
Sbjct: 45  GDRV---FCFGPHAERVVVPANLLVPLPDGLPPERAALTALA-ATALNG-VRDAEPRLGE 99

Query: 94  SLLVHAGAGGLGQAAISIALHMGCTV 119
            + V  G G +G  A  +A   G   
Sbjct: 100 RVAV-VGLGLVGLLAAQLAKAAGARE 124

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.95
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.94
KOG1197|consensus	336		99.92
KOG0025|consensus	354		99.89
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.87
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.86
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.86
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.86
KOG0023|consensus	360		99.86
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.86
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.85
PLN02740	381	Alcohol dehydrogenase-like	99.85
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.85
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.85
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.85
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.85
KOG0024|consensus	354		99.84
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.84
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.84
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.84
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.84
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.84
KOG1198|consensus	347		99.84
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.84
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.84
PLN02827	378	Alcohol dehydrogenase-like	99.84
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.83
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.83
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.83
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.82
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.82
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.82
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.82
PTZ00354	334	alcohol dehydrogenase; Provisional	99.81
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.81
KOG1202|consensus	2376		99.81
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.8
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.8
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.8
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.8
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.8
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.8
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.8
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.79
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.79
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.79
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.79
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.79
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.79
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.79
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.79
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.79
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.78
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.78
KOG0022|consensus	375		99.78
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.78
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.78
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.78
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.78
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.78
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.78
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.77
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.77
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.77
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.77
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.77
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.77
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.76
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.76
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.76
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.76
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.76
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.76
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.76
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.76
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.76
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.76
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.76
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.76
PRK10083	339	putative oxidoreductase; Provisional	99.76
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.75
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.75
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.75
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.75
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.75
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.75
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.75
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.75
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.75
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.75
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.75
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.74
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.74
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.74
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.74
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.74
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.74
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.73
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.73
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.73
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.73
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.73
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.73
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.72
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.72
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.72
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.72
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.72
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.72
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.72
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.71
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.7
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.7
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.7
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.7
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.69
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.69
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.68
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.68
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.66
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.66
PLN02702	364	L-idonate 5-dehydrogenase	99.65
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.64
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.62
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.61
KOG1196|consensus	343		99.54
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	98.64
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.86
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.75
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.71
PRK08324	681	short chain dehydrogenase; Validated	96.46
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.14
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.03
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.77
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.49
PRK07831	262	short chain dehydrogenase; Provisional	95.48
PLN02494	477	adenosylhomocysteinase	95.46
PRK12367	245	short chain dehydrogenase; Provisional	95.41
PLN03209	576	translocon at the inner envelope of chloroplast su	95.32
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.29
PRK05866	293	short chain dehydrogenase; Provisional	95.18
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.17
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.16
PRK06841	255	short chain dehydrogenase; Provisional	95.14
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.95
PRK06128	300	oxidoreductase; Provisional	94.93
PRK08213	259	gluconate 5-dehydrogenase; Provisional	94.91
PLN02780	320	ketoreductase/ oxidoreductase	94.89
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.86
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.85
PRK05854	313	short chain dehydrogenase; Provisional	94.82
PRK06197	306	short chain dehydrogenase; Provisional	94.81
PLN02253	280	xanthoxin dehydrogenase	94.81
PRK06196	315	oxidoreductase; Provisional	94.79
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.75
PRK07985	294	oxidoreductase; Provisional	94.67
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	94.63
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.42
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	94.4
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.33
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	94.04
KOG1201|consensus	300		94.04
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.01
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.99
PLN02572	442	UDP-sulfoquinovose synthase	93.97
PRK06701	290	short chain dehydrogenase; Provisional	93.79
PLN02686	367	cinnamoyl-CoA reductase	93.78
PLN02206	442	UDP-glucuronate decarboxylase	93.71
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.62
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.6
PF10686	71	DUF2493: Protein of unknown function (DUF2493); In	93.59
PRK06720	169	hypothetical protein; Provisional	93.45
KOG1205|consensus	282		93.4
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	93.13
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.12
PRK06484	520	short chain dehydrogenase; Validated	93.11
PLN02166	436	dTDP-glucose 4,6-dehydratase	92.67
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.57
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.56
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.42
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	92.38
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.16
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.06
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	91.99
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	91.87
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	91.82
PRK14031	444	glutamate dehydrogenase; Provisional	91.68
PRK14030	445	glutamate dehydrogenase; Provisional	91.62
PRK07201	657	short chain dehydrogenase; Provisional	91.5
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.22
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	91.08
PRK05855	582	short chain dehydrogenase; Validated	91.0
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.94
PRK06932	314	glycerate dehydrogenase; Provisional	90.9
PLN02928	347	oxidoreductase family protein	90.83
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	90.62
PRK06487	317	glycerate dehydrogenase; Provisional	90.41
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	90.38
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	90.31
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.25
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	90.24
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	90.24
PLN02477	410	glutamate dehydrogenase	90.05
KOG1200|consensus	256		89.89
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	89.87
PRK12548	289	shikimate 5-dehydrogenase; Provisional	89.84
PLN02427	386	UDP-apiose/xylose synthase	89.78
KOG1208|consensus	314		89.68
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	89.63
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	89.54
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	89.5
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.25
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	89.14
PRK09414	445	glutamate dehydrogenase; Provisional	89.08
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	88.89
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	88.88
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	88.78
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	88.71
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.71
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	88.31
PRK06436	303	glycerate dehydrogenase; Provisional	88.18
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	87.94
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.87
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	87.65
KOG1252|consensus	362		87.5
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	87.48
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	87.47
PRK13243	333	glyoxylate reductase; Reviewed	87.25
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	86.95
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	86.78
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	86.68
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	86.5
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	86.23
KOG1210|consensus	331		85.59
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	85.54
KOG2862|consensus	385		85.52
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	85.5
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.27
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	85.18
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.02
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.95
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	84.68
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	84.65
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	84.6
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	84.49
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	84.44
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.3
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	84.18
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	84.08
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.98
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.88
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.81
PLN02306	386	hydroxypyruvate reductase	83.5
KOG1610|consensus	322		83.44
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	83.26
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	83.22
PRK06719	157	precorrin-2 dehydrogenase; Validated	83.1
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.08
PRK07574	385	formate dehydrogenase; Provisional	83.05
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	82.77
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.53
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.43
PRK12480	330	D-lactate dehydrogenase; Provisional	82.27
COG0503	179	Apt Adenine/guanine phosphoribosyltransferases and	82.24
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.21
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	82.14
KOG1203|consensus	411		82.13
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.09
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	81.81
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	81.68
PRK12831	464	putative oxidoreductase; Provisional	81.55
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.95
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.71
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	80.51
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	80.43
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.4
PRK13984	604	putative oxidoreductase; Provisional	80.39
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.12
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	80.07

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.95  E-value=5.4e-28  Score=177.55  Aligned_cols=116  Identities=34%  Similarity=0.502  Sum_probs=103.6

Q ss_pred             CCCCCCCCCCCCC-----CCCCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCC
Q psy3430           4 SGKLPPDALPGDL-----AGQDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWT   65 (121)
Q Consensus         4 ~g~~~~~~~~~~~-----~~~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~   65 (121)
                      .|.+|.|.+....     .++|.++|.|++|+|          ++||+|+...   .+|+|+||.++|++.++++|+++|
T Consensus        37 ~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls  116 (326)
T COG0604          37 AGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLS  116 (326)
T ss_pred             eecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCC
Confidence            3555655554432     237999999999999          6999999986   679999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          66 LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        66 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                      +++||+++++++|||+++.+..++++|++|||+||+|++|++++|+||++|+++
T Consensus       117 ~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~  170 (326)
T COG0604         117 FEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATV  170 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcE
Confidence            999999999999999999999999999999999999999999999999999644

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.94  E-value=6.8e-27  Score=170.94  Aligned_cols=102  Identities=27%  Similarity=0.397  Sum_probs=93.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEE----------------------------EccCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMG----------------------------LVAARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~----------------------------~~~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||.+|+|          ++||||..                            +..+|+|+||+++|++++++
T Consensus        56 ~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~  135 (339)
T COG1064          56 KLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVK  135 (339)
T ss_pred             CCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEE
Confidence            47999999999998          78999942                            23469999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+++|+++||.+.|++.|.|++| +..+++||++|+|.| .|++|++++|+|+++|++|++
T Consensus       136 iP~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G-~GGlGh~avQ~Aka~ga~Via  195 (339)
T COG1064         136 IPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVG-AGGLGHMAVQYAKAMGAEVIA  195 (339)
T ss_pred             CCCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEE
Confidence            999999999999999999999999 569999999999999 679999999999999999974

>KOG1197|consensus

Probab=99.92  E-value=8.3e-25  Score=153.64  Aligned_cols=114  Identities=29%  Similarity=0.382  Sum_probs=105.1

Q ss_pred             CccCCCCCCCCCCCCCCCCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHh
Q psy3430           1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS   70 (121)
Q Consensus         1 ~~~~g~~~~~~~~~~~~~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa   70 (121)
                      |++.|.|..       .+.|+++|.|.+|+|          ++||||.-+.+.|.|+|+..+|...+.++|+.++++++|
T Consensus        53 y~RkGlY~~-------~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aa  125 (336)
T KOG1197|consen   53 YFRKGLYDP-------APLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAA  125 (336)
T ss_pred             HHhccccCC-------CCCCcCCCcccceEEEEecCCccccccccEEEEeccchhhheeccccceeeccCCcccCHHHHH
Confidence            356677732       247899999999998          899999999888999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++.+.++|||..+++..++++|++||+|.|+|++|++++|++|+.|+++|+
T Consensus       126 a~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~  176 (336)
T KOG1197|consen  126 ALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIA  176 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEE
Confidence            999999999999999999999999999999999999999999999998773

>KOG0025|consensus

Probab=99.89  E-value=6.7e-23  Score=146.03  Aligned_cols=110  Identities=28%  Similarity=0.303  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCCCCCCCCCccCcceEEEE----------ccCCEEEEEccC-CceeEEEEeCCCCeEEcCCCCCHHHHhhc
Q psy3430           4 SGKLPPDALPGDLAGQDCVLGLEFSGRD----------TKGRRVMGLVAA-RSLATTVLADPSFLWEVPAKWTLEEASTI   72 (121)
Q Consensus         4 ~g~~~~~~~~~~~~~~~~~~G~e~~G~V----------~~Gd~V~~~~~~-g~~~~~~~v~~~~~~~~p~~~~~~~aa~l   72 (121)
                      +|.||.+      +++|.+-|+|++|+|          ++||+|+....+ |+|+||.+.+++.++++++.++.+.||++
T Consensus        68 QGvYpvr------P~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~  141 (354)
T KOG0025|consen   68 QGVYPVR------PELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATL  141 (354)
T ss_pred             ccccCCC------CCCCcccCCcceEEEEEecCCcCccCCCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhhee
Confidence            4555554      467899999999998          899999987654 99999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          73 PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        73 ~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                      ..+.+|||++|.+.-++++||+|..+||.+++|++.+|+||++|.+-
T Consensus       142 ~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gikt  188 (354)
T KOG0025|consen  142 SVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKT  188 (354)
T ss_pred             ccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcce
Confidence            99999999999999999999999999999999999999999999864

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.87  E-value=1.7e-21  Score=144.82  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=92.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc---------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA---------------------------------------------   42 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~---------------------------------------------   42 (121)
                      .+|.++|||++|+|          ++||+|+....                                             
T Consensus        54 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~  133 (368)
T TIGR02818        54 VFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYH  133 (368)
T ss_pred             CCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccc
Confidence            35789999999998          68999976421                                             


Q ss_pred             ---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          43 ---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        43 ---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                         +|+|+||+++|++.++++|+++++++++.+++++.|+|+++.+..++++|++|||+| +|++|++++|+||++|+ +
T Consensus       134 ~~~~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~  212 (368)
T TIGR02818       134 YMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASR  212 (368)
T ss_pred             cccCccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence               268999999999999999999999999999999999999997888999999999998 69999999999999999 6


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       213 Vi  214 (368)
T TIGR02818       213 II  214 (368)
T ss_pred             EE
Confidence            76

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.86  E-value=2.1e-21  Score=144.06  Aligned_cols=102  Identities=25%  Similarity=0.360  Sum_probs=91.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-c----------------------------------cCCceeEEEEe
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-V----------------------------------AARSLATTVLA   52 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-~----------------------------------~~g~~~~~~~v   52 (121)
                      .+|.++|||++|+|          ++||+|+.. .                                  .+|+|+||+++
T Consensus        65 ~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v  144 (360)
T PLN02586         65 RYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVV  144 (360)
T ss_pred             CCCccCCcceeEEEEEECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEE
Confidence            35889999999998          689999731 1                                  15899999999


Q ss_pred             CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++.++++|+++++++++.+.+.+.|+|+++.+...+++|++|+|.| +|++|++++|+||.+|++|+
T Consensus       145 ~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi  211 (360)
T PLN02586        145 DQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVT  211 (360)
T ss_pred             chHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            99999999999999999999999999999997777788999999988 69999999999999999875

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.86  E-value=3.9e-21  Score=141.08  Aligned_cols=100  Identities=23%  Similarity=0.282  Sum_probs=90.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~~   60 (121)
                      +|.++|||++|+|          ++||+|+..                            ..+|+|+||++++++.++++
T Consensus        56 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l  135 (329)
T TIGR02822        56 PRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRL  135 (329)
T ss_pred             CCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEEC
Confidence            4689999999998          689999642                            12589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |+++++++++.+++++.|||+++ +..++++|++|||+|+ |++|++++|+|+.+|++|+
T Consensus       136 P~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi  193 (329)
T TIGR02822       136 PTGYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVH  193 (329)
T ss_pred             CCCCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEE
Confidence            99999999999999999999999 5689999999999995 9999999999999999876

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.86  E-value=4.2e-21  Score=142.73  Aligned_cols=102  Identities=23%  Similarity=0.266  Sum_probs=91.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc---------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA---------------------------------------------   42 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~---------------------------------------------   42 (121)
                      .+|.++|||++|+|          ++||+|+....                                             
T Consensus        60 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~  139 (371)
T cd08281          60 PLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINH  139 (371)
T ss_pred             CCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCccccc
Confidence            35789999999998          68999986310                                             


Q ss_pred             ---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          43 ---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        43 ---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                         .|+|+||++++++.++++|+++++++++.+.++..|||+++.+..++++|++|+|.| +|++|++++|+||.+|+ +
T Consensus       140 ~~g~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~  218 (371)
T cd08281         140 HLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQ  218 (371)
T ss_pred             ccCcccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCc
Confidence               268999999999999999999999999999999999999987888999999999998 69999999999999999 5


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       219 Vi  220 (371)
T cd08281         219 VV  220 (371)
T ss_pred             EE
Confidence            65

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG0023|consensus

Probab=99.86  E-value=5.8e-22  Score=142.89  Aligned_cols=103  Identities=27%  Similarity=0.375  Sum_probs=91.3

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEE------------------------------EEccC-----CceeEEEE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVM------------------------------GLVAA-----RSLATTVL   51 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~------------------------------~~~~~-----g~~~~~~~   51 (121)
                      .+.|.++|||.+|+|          ++||+|=                              ++..+     |+|++|++
T Consensus        63 s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~  142 (360)
T KOG0023|consen   63 SKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAV  142 (360)
T ss_pred             ccCCccCCceeeEEEEEECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEE
Confidence            468999999999998          7899981                              11123     55999999


Q ss_pred             eCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          52 ADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        52 v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +++..++++|++++.++||.+.|++.|.|..| ...++.||+++-|.| .|++|.+++|+||++|.+|++
T Consensus       143 v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~G-lGGLGh~aVq~AKAMG~rV~v  210 (360)
T KOG0023|consen  143 VDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVG-LGGLGHMAVQYAKAMGMRVTV  210 (360)
T ss_pred             EeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEec-CcccchHHHHHHHHhCcEEEE
Confidence            99999999999999999999999999999999 778899999999999 555999999999999999874

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.86  E-value=7.2e-21  Score=138.83  Aligned_cols=99  Identities=27%  Similarity=0.390  Sum_probs=91.0

Q ss_pred             CCCccCcceEEEE-------ccCCEEEEEccCCceeEEEEeCCCCeEEc----CCCCCHHHH-hhcchHHHHHHHHHHhh
Q psy3430          19 QDCVLGLEFSGRD-------TKGRRVMGLVAARSLATTVLADPSFLWEV----PAKWTLEEA-STIPVVYATAYYSLIVR   86 (121)
Q Consensus        19 ~~~~~G~e~~G~V-------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~----p~~~~~~~a-a~l~~~~~ta~~~l~~~   86 (121)
                      .|.++|.|++|+|       ++||+|+++   ++|+||++++.+.+.++    |++++++++ +++++++.|||+++.+.
T Consensus        57 ~~~i~G~~~~g~v~~~~~~~~~GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~  133 (325)
T TIGR02825        57 GDTMMGQQVARVVESKNVALPKGTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEI  133 (325)
T ss_pred             CCcEecceEEEEEEeCCCCCCCCCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHH
Confidence            4679999999999       789999986   46999999999888777    899999987 68999999999999888


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++|++|||+|++|++|++++|+||.+|++|+
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi  167 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVV  167 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999999999876

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.85  E-value=7e-21  Score=139.51  Aligned_cols=100  Identities=26%  Similarity=0.314  Sum_probs=90.9

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      +|.++|||++|+|          ++||+|+...                            .+|+|+||++++++.++++
T Consensus        54 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~  133 (339)
T cd08239          54 QGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPL  133 (339)
T ss_pred             CCceeccCceEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEEC
Confidence            4789999999998          6899997642                            2589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      |+++++++++.+++++.|+|+++ +..++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus       134 P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi  192 (339)
T cd08239         134 PDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVI  192 (339)
T ss_pred             CCCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999999 567899999999998 699999999999999997 76

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02740 Alcohol dehydrogenase-like

Probab=99.85  E-value=6.3e-21  Score=142.34  Aligned_cols=102  Identities=17%  Similarity=0.228  Sum_probs=92.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+...                                              
T Consensus        64 ~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (381)
T PLN02740         64 AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQP  143 (381)
T ss_pred             CCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCc
Confidence            45889999999998          6899998642                                              


Q ss_pred             -----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430          42 -----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG  116 (121)
Q Consensus        42 -----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G  116 (121)
                           .+|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+||.+|
T Consensus       144 ~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G  222 (381)
T PLN02740        144 IYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARG  222 (381)
T ss_pred             ccccccCccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCC
Confidence                 1489999999999999999999999999999999999999987888999999999998 6999999999999999


Q ss_pred             C-EEe
Q psy3430         117 C-TVY  120 (121)
Q Consensus       117 ~-~vi  120 (121)
                      + +|+
T Consensus       223 ~~~Vi  227 (381)
T PLN02740        223 ASKII  227 (381)
T ss_pred             CCcEE
Confidence            9 575

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.85  E-value=1.4e-20  Score=139.65  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=92.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+.+.                                              
T Consensus        55 ~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~  134 (369)
T cd08301          55 LFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIY  134 (369)
T ss_pred             CCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCccee
Confidence            45889999999998          6899998641                                              


Q ss_pred             ---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-
Q psy3430          42 ---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-  117 (121)
Q Consensus        42 ---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-  117 (121)
                         ..|+|+||+++++..++++|+++++++++.++++..|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|+ 
T Consensus       135 ~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~  213 (369)
T cd08301         135 HFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGAS  213 (369)
T ss_pred             eeeccccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence               1278999999999999999999999999999999999999987888999999999998 69999999999999998 


Q ss_pred             EEe
Q psy3430         118 TVY  120 (121)
Q Consensus       118 ~vi  120 (121)
                      +|+
T Consensus       214 ~vi  216 (369)
T cd08301         214 RII  216 (369)
T ss_pred             eEE
Confidence            675

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.85  E-value=9.3e-21  Score=138.93  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=88.7

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHH----HhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEE----ASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~----aa~l~~~~~ta~~~l   83 (121)
                      ++|.++|+|++|+|          ++||+|+++.  ++|+||++++++.++++|+++++.+    +++++.++.|||+++
T Consensus        67 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al  144 (345)
T cd08293          67 PWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGI  144 (345)
T ss_pred             CccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHH
Confidence            45789999999998          6899998764  6799999999999999999854322    457788999999999


Q ss_pred             HhhcCCCCC--CEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          84 IVRGKMRPG--ESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        84 ~~~~~~~~g--~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      .+.+++++|  ++|||+||+|++|++++|+||++|+ +|++
T Consensus       145 ~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~  185 (345)
T cd08293         145 QEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVG  185 (345)
T ss_pred             HHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEE
Confidence            888889887  9999999999999999999999999 7763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.85  E-value=9.4e-21  Score=139.47  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=85.9

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEE--------------------------------ccCCceeEEEEeCCCCe
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGL--------------------------------VAARSLATTVLADPSFL   57 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~--------------------------------~~~g~~~~~~~v~~~~~   57 (121)
                      .+|.++|||++|+|        ++||+|+..                                ..+|+|+||++++++.+
T Consensus        58 ~~p~v~GhE~~G~V~~v~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  137 (343)
T PRK09880         58 KAPMVLGHEVIGKIVHSDSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQC  137 (343)
T ss_pred             cCCcccCcccEEEEEEecCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHe
Confidence            46899999999998        789999742                                12599999999999999


Q ss_pred             EEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          58 WEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        58 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +++|++++++++ ++..++.|+|+++ +.....+|++|+|+| +|++|++++|+|+++|+ +|+
T Consensus       138 ~~~P~~l~~~~a-a~~~~~~~a~~al-~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi  198 (343)
T PRK09880        138 IPYPEKADEKVM-AFAEPLAVAIHAA-HQAGDLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIV  198 (343)
T ss_pred             EECCCCCCHHHH-HhhcHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            999999999765 4667888999999 445667899999998 59999999999999999 565

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.85  E-value=9.1e-21  Score=139.69  Aligned_cols=101  Identities=15%  Similarity=0.068  Sum_probs=85.3

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEc------------------------cCCceeEEEEeCCCCeEEcCCCCC
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLV------------------------AARSLATTVLADPSFLWEVPAKWT   65 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------------------------~~g~~~~~~~v~~~~~~~~p~~~~   65 (121)
                      .+|.++|||++|+|        ++||+|+...                        .+|+|+||+++|++.++++|++++
T Consensus        57 ~~P~i~GhE~~G~V~~~g~~~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~  136 (341)
T cd08237          57 KLPMALIHEGIGVVVSDPTGTYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVD  136 (341)
T ss_pred             CCCeeccceeEEEEEeeCCCccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCC
Confidence            46899999999998        7999997531                        258899999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHhh--cCCCCCCEEEEecCCchHHHHHHHHHHH-CC-CEEe
Q psy3430          66 LEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALH-MG-CTVY  120 (121)
Q Consensus        66 ~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vli~ga~g~vG~~aiqla~~-~G-~~vi  120 (121)
                      +++++ +..+..++++++...  ..+++||+|+|.| +|++|++++|+++. .| ++|+
T Consensus       137 ~~~aa-~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~vi  193 (341)
T cd08237         137 PEVAA-FTELVSVGVHAISRFEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKLV  193 (341)
T ss_pred             hHHhh-hhchHHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcEE
Confidence            98875 556889999998543  4568999999999 69999999999986 55 4665

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG0024|consensus

Probab=99.84  E-value=4e-21  Score=138.77  Aligned_cols=100  Identities=26%  Similarity=0.308  Sum_probs=89.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      +.|.++|||.+|+|          ++||||.-=.                            .+|+++||++.++..++|
T Consensus        60 k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~K  139 (354)
T KOG0024|consen   60 KKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYK  139 (354)
T ss_pred             ccccccccccccchhhhcccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheee
Confidence            47999999999999          8999994210                            259999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +||++|++++ +|..++.+++|+. +++++++|++|||+| +|++|+.+...||++|| +|+
T Consensus       140 LPd~vs~eeG-Al~ePLsV~~HAc-r~~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~~VV  198 (354)
T KOG0024|consen  140 LPDNVSFEEG-ALIEPLSVGVHAC-RRAGVKKGSKVLVLG-AGPIGLLTGLVAKAMGASDVV  198 (354)
T ss_pred             CCCCCchhhc-ccccchhhhhhhh-hhcCcccCCeEEEEC-CcHHHHHHHHHHHHcCCCcEE
Confidence            9999999988 4556899999999 899999999999999 89999999999999999 554

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.84  E-value=2.9e-20  Score=134.78  Aligned_cols=101  Identities=23%  Similarity=0.205  Sum_probs=93.4

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      .|.++|||++|+|          ++||+|+++..+|+|++|+.+++..++++|+++++++++.++..+.|+|+++ +..+
T Consensus        58 ~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~  136 (324)
T cd08292          58 LPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLG  136 (324)
T ss_pred             CCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhC
Confidence            4678999999998          5799999986568999999999999999999999999999999999999998 5689


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++|++|+|+|++|.+|++++|+|+++|++++
T Consensus       137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~  168 (324)
T cd08292         137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVI  168 (324)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHCCCeEE
Confidence            99999999999999999999999999999876

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.84  E-value=5.1e-20  Score=133.92  Aligned_cols=100  Identities=25%  Similarity=0.343  Sum_probs=89.8

Q ss_pred             CCCCccCcceEEEE-------ccCCEEEEEccCCceeEEEEeCCC---CeEEcCCCCC-----HHHHhhcchHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD-------TKGRRVMGLVAARSLATTVLADPS---FLWEVPAKWT-----LEEASTIPVVYATAYYS   82 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-------~~Gd~V~~~~~~g~~~~~~~v~~~---~~~~~p~~~~-----~~~aa~l~~~~~ta~~~   82 (121)
                      ..|.++|+|++|+|       ++||+|++.   ++|++|++++++   .++++|++++     ....+++++++.|||++
T Consensus        58 ~~p~v~G~e~~G~V~~~~~~~~~Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~a  134 (329)
T cd08294          58 EGDTMIGTQVAKVIESKNSKFPVGTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFG  134 (329)
T ss_pred             CCCcEecceEEEEEecCCCCCCCCCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHH
Confidence            35789999999998       689999986   579999999999   9999999988     23335788999999999


Q ss_pred             HHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          83 LIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        83 l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+..++++|++|||+||+|++|++++|+|+.+|++|+
T Consensus       135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi  172 (329)
T cd08294         135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVI  172 (329)
T ss_pred             HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence            98889999999999999999999999999999999876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.84  E-value=2.6e-20  Score=138.35  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=91.7

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+...                                              
T Consensus        55 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~  134 (368)
T cd08300          55 LFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYH  134 (368)
T ss_pred             CCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCccccc
Confidence            46789999999998          6899998641                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                        ..|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|||+| +|++|++++|+||.+|+ +
T Consensus       135 ~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~  213 (368)
T cd08300         135 FMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASR  213 (368)
T ss_pred             ccccccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence              1258999999999999999999999999999999999999987888999999999998 69999999999999999 5


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       214 vi  215 (368)
T cd08300         214 II  215 (368)
T ss_pred             EE
Confidence            75

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.84  E-value=4.7e-20  Score=136.32  Aligned_cols=99  Identities=24%  Similarity=0.271  Sum_probs=87.6

Q ss_pred             CCCccCc--ceEEEE----------ccCCEEEEEccCCceeEEEEeCCCC--eEE--cCCCCCHH-HHhhcchHHHHHHH
Q psy3430          19 QDCVLGL--EFSGRD----------TKGRRVMGLVAARSLATTVLADPSF--LWE--VPAKWTLE-EASTIPVVYATAYY   81 (121)
Q Consensus        19 ~~~~~G~--e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~--~~~--~p~~~~~~-~aa~l~~~~~ta~~   81 (121)
                      +|.++|+  |++|+|          ++||+|+++   ++|+||.++++..  +.+  +|++++++ +++++++++.|||+
T Consensus        72 ~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~  148 (348)
T PLN03154         72 PPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYA  148 (348)
T ss_pred             CCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHH
Confidence            5788998  788887          689999876   6899999998753  544  48999986 68899999999999


Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.+..++++|++|||+|++|++|++++|+||++|++|+
T Consensus       149 al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi  187 (348)
T PLN03154        149 GFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVV  187 (348)
T ss_pred             HHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence            998889999999999999999999999999999999876

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.84  E-value=1.6e-20  Score=137.79  Aligned_cols=99  Identities=22%  Similarity=0.212  Sum_probs=86.2

Q ss_pred             CCCccCcce-----EEEE-------ccCCEEEEEccCCceeEEEEeCC-CCeEEcC-CCCCHH-HHhhcchHHHHHHHHH
Q psy3430          19 QDCVLGLEF-----SGRD-------TKGRRVMGLVAARSLATTVLADP-SFLWEVP-AKWTLE-EASTIPVVYATAYYSL   83 (121)
Q Consensus        19 ~~~~~G~e~-----~G~V-------~~Gd~V~~~~~~g~~~~~~~v~~-~~~~~~p-~~~~~~-~aa~l~~~~~ta~~~l   83 (121)
                      +|.++|++.     +++|       ++||+|+++   |+|+||+++++ ..++++| ++++++ +++++++++.|||+++
T Consensus        67 ~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l  143 (338)
T cd08295          67 PPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGF  143 (338)
T ss_pred             CCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHH
Confidence            456777543     3334       689999976   68999999999 7999995 678887 7899999999999999


Q ss_pred             HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+..++++|++|+|+||+|++|++++|+||.+|++|+
T Consensus       144 ~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi  180 (338)
T cd08295         144 YEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVV  180 (338)
T ss_pred             HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence            8889999999999999999999999999999999876

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG1198|consensus

Probab=99.84  E-value=1.6e-20  Score=138.93  Aligned_cols=103  Identities=32%  Similarity=0.497  Sum_probs=89.7

Q ss_pred             CCCCccCcceEEEE--------------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.+.+.++.|++              ..||.+.....+|+|+||.++|+..++++|++++++++++++.++.|||.++
T Consensus        64 ~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al  143 (347)
T KOG1198|consen   64 EFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSAL  143 (347)
T ss_pred             CCCCccccccCCceeEEeccccccccceEeeeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHH
Confidence            46666666666663              3455555566679999999999999999999999999999999999999999


Q ss_pred             Hhhc------CCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          84 IVRG------KMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        84 ~~~~------~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ....      +.++|++|||+||+|++|++++|+|+.++ ++|+
T Consensus       144 ~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~  187 (347)
T KOG1198|consen  144 FQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVV  187 (347)
T ss_pred             HhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEE
Confidence            9999      99999999999999999999999999999 5654

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.84  E-value=3.1e-20  Score=135.51  Aligned_cols=103  Identities=29%  Similarity=0.366  Sum_probs=94.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      +|.++|+|++|+|          ++||+|+++.   ..|+|+||++++++.++++|+++++++++.++++..|||+++.+
T Consensus        58 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~  137 (336)
T TIGR02817        58 QPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFD  137 (336)
T ss_pred             CCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHH
Confidence            4678999999998          5899999874   25899999999999999999999999999999999999999988


Q ss_pred             hcCCCC-----CCEEEEecCCchHHHHHHHHHHHC-CCEEeC
Q psy3430          86 RGKMRP-----GESLLVHAGAGGLGQAAISIALHM-GCTVYT  121 (121)
Q Consensus        86 ~~~~~~-----g~~vli~ga~g~vG~~aiqla~~~-G~~vi~  121 (121)
                      ..++++     |++|+|+|++|++|++++|+||.+ |++|++
T Consensus       138 ~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~  179 (336)
T TIGR02817       138 RLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIA  179 (336)
T ss_pred             hcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEE
Confidence            888887     999999999999999999999998 998763

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.84  E-value=4.9e-20  Score=136.73  Aligned_cols=102  Identities=22%  Similarity=0.316  Sum_probs=92.0

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+...                                              
T Consensus        54 ~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~  133 (365)
T cd08277          54 LFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHF  133 (365)
T ss_pred             CCCeecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccc
Confidence            45789999999998          6899998742                                              


Q ss_pred             -cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430          42 -AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TV  119 (121)
Q Consensus        42 -~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~v  119 (121)
                       ..|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|+ +|
T Consensus       134 ~~~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~V  212 (365)
T cd08277         134 LGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRI  212 (365)
T ss_pred             cccccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeE
Confidence             1378999999999999999999999999999999999999987888999999999997 69999999999999999 66


Q ss_pred             e
Q psy3430         120 Y  120 (121)
Q Consensus       120 i  120 (121)
                      +
T Consensus       213 i  213 (365)
T cd08277         213 I  213 (365)
T ss_pred             E
Confidence            5

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02827 Alcohol dehydrogenase-like

Probab=99.84  E-value=3.5e-20  Score=138.38  Aligned_cols=102  Identities=17%  Similarity=0.169  Sum_probs=90.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc---------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA---------------------------------------------   42 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~---------------------------------------------   42 (121)
                      .+|.++|||++|+|          ++||+|+....                                             
T Consensus        62 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~  141 (378)
T PLN02827         62 LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYH  141 (378)
T ss_pred             CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCccccc
Confidence            35789999999998          68999987531                                             


Q ss_pred             ---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-
Q psy3430          43 ---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-  118 (121)
Q Consensus        43 ---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-  118 (121)
                         +|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|||+| +|++|++++|+||++|++ 
T Consensus       142 ~~~~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~  220 (378)
T PLN02827        142 YCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQ  220 (378)
T ss_pred             ccccccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence               279999999999999999999999999999989999999886778899999999998 699999999999999984 


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       221 vi  222 (378)
T PLN02827        221 II  222 (378)
T ss_pred             EE
Confidence            54

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.83  E-value=3.7e-20  Score=138.28  Aligned_cols=102  Identities=24%  Similarity=0.334  Sum_probs=89.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-----------------------------------cCCceeEEEEe
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-----------------------------------AARSLATTVLA   52 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-----------------------------------~~g~~~~~~~v   52 (121)
                      .+|.++|||++|+|          ++||+|....                                   .+|+|+||+++
T Consensus        59 ~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v  138 (375)
T PLN02178         59 RYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVV  138 (375)
T ss_pred             CCCcccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEE
Confidence            35789999999998          6899997311                                   15899999999


Q ss_pred             CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++.++++|+++++++++++.+...|+|+++.+... .++|++|+|.| +|++|++++|+||.+|++|+
T Consensus       139 ~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi  206 (375)
T PLN02178        139 DHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVT  206 (375)
T ss_pred             chHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEE
Confidence            999999999999999999999999999999855543 36899999998 69999999999999999876

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.83  E-value=5.2e-20  Score=136.23  Aligned_cols=102  Identities=22%  Similarity=0.214  Sum_probs=91.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------cCCcee
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------AARSLA   47 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------~~g~~~   47 (121)
                      .+|.++|||++|+|          ++||+|+...                                        .+|+|+
T Consensus        53 ~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~a  132 (358)
T TIGR03451        53 EFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFA  132 (358)
T ss_pred             cCCcccccceEEEEEEeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCccccccccccccc
Confidence            35789999999998          6899997521                                        248999


Q ss_pred             EEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          48 TTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        48 ~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      ||+.++++.++++|+++++++++.+.++..|+|+++.+..++++|++|||+| +|++|++++|+||.+|++ |+
T Consensus       133 ey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi  205 (358)
T TIGR03451       133 EKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKII  205 (358)
T ss_pred             ceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            9999999999999999999999999999999999887888999999999998 699999999999999995 65

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.83  E-value=1.1e-19  Score=130.65  Aligned_cols=76  Identities=24%  Similarity=0.181  Sum_probs=68.7

Q ss_pred             CCceeEEEEeCCC-CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          43 ARSLATTVLADPS-FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        43 ~g~~~~~~~v~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      +|+|+||++++++ .++++|+++++++++.+.+...|+|+++ +....++|++|+|+| +|++|++++|+||++|++ |+
T Consensus        72 ~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~~Vi  149 (280)
T TIGR03366        72 SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVG-AGMLGLTAAAAAAAAGAARVV  149 (280)
T ss_pred             cccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            4899999999997 6999999999999999999999999998 445667999999998 599999999999999996 65

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.82  E-value=1.3e-19  Score=134.31  Aligned_cols=101  Identities=26%  Similarity=0.282  Sum_probs=90.5

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEE-----------------------------------ccCCceeEEEEeC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------VAARSLATTVLAD   53 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------~~~g~~~~~~~v~   53 (121)
                      +|.++|||++|+|          ++||+|+..                                   ..+|+|+||++++
T Consensus        63 ~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~  142 (357)
T PLN02514         63 YPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVD  142 (357)
T ss_pred             CCccCCceeeEEEEEECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEc
Confidence            5789999999998          689999731                                   1248999999999


Q ss_pred             CCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          54 PSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        54 ~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.++++|+++++++++.+++++.|||+++.+....++|++++|+| +|++|++++|+||.+|++++
T Consensus       143 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi  208 (357)
T PLN02514        143 QKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVT  208 (357)
T ss_pred             hHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEE
Confidence            9999999999999999999999999999997767778999999997 79999999999999999875

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.82  E-value=2.2e-19  Score=131.67  Aligned_cols=103  Identities=26%  Similarity=0.348  Sum_probs=93.6

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc-------------------cCCceeEEEEeCCCCeEEcCCCCCHH
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV-------------------AARSLATTVLADPSFLWEVPAKWTLE   67 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------~~g~~~~~~~v~~~~~~~~p~~~~~~   67 (121)
                      ...|.++|||++|+|          ++||+|+...                   .+|+|++|+.++++.++++|++++++
T Consensus        75 ~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~  154 (350)
T cd08274          75 LSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDV  154 (350)
T ss_pred             CCCCcccCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHH
Confidence            346789999999998          5799998731                   24899999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        68 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++.+++++.|+|+++ +..++++|++|+|+|++|++|++++|+|+.+|++++
T Consensus       155 ~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi  206 (350)
T cd08274         155 ELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI  206 (350)
T ss_pred             HHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEE
Confidence            9999999999999998 778999999999999889999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.82  E-value=1.1e-19  Score=133.03  Aligned_cols=102  Identities=27%  Similarity=0.295  Sum_probs=94.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG   87 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~   87 (121)
                      .|.++|||++|+|          ++||+|++.. ..|+|+||+.++++.++++|+++++++++.++++..|+|+++.+..
T Consensus        63 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~  142 (341)
T cd08290          63 PPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFV  142 (341)
T ss_pred             CCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhc
Confidence            5678999999998          5899999875 3589999999999999999999999999999999999999998778


Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++|||+|++|++|++++|+|+++|++++
T Consensus       143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~  175 (341)
T cd08290         143 KLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTI  175 (341)
T ss_pred             ccCCCCEEEEccchhHHHHHHHHHHHHcCCeEE
Confidence            899999999999999999999999999999875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.82  E-value=2e-19  Score=129.71  Aligned_cols=102  Identities=30%  Similarity=0.461  Sum_probs=94.5

Q ss_pred             CCCccCcceEEEE--------ccCCEEEEEcc------CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430          19 QDCVLGLEFSGRD--------TKGRRVMGLVA------ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        19 ~~~~~G~e~~G~V--------~~Gd~V~~~~~------~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~   84 (121)
                      .|.++|+|++|+|        ++||+|+++..      +|+|++|+.+++..++++|+++++++++.++.++.|||+++.
T Consensus        56 ~~~~~g~e~~G~v~~vG~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~  135 (320)
T cd08243          56 FPRVLGIEAVGEVEEAPGGTFTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLF  135 (320)
T ss_pred             CCccccceeEEEEEEecCCCCCCCCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHH
Confidence            3578999999998        68999998753      489999999999999999999999999999999999999998


Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +..++++|++|+|+|++|++|++++|+|+.+|++|+
T Consensus       136 ~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~  171 (320)
T cd08243         136 RSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVT  171 (320)
T ss_pred             HhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEE
Confidence            888899999999999999999999999999999876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.81  E-value=4.1e-19  Score=129.03  Aligned_cols=101  Identities=36%  Similarity=0.596  Sum_probs=94.1

Q ss_pred             CCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCC
Q psy3430          20 DCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKM   89 (121)
Q Consensus        20 ~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~   89 (121)
                      +.++|+|++|+|          ++||+|+++..+|+|+||++++.+.++++|+++++++++.++.++.|+|+++.+..++
T Consensus        59 ~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~  138 (334)
T PTZ00354         59 SEILGLEVAGYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDV  138 (334)
T ss_pred             CcccceeeEEEEEEeCCCCCCCCCCCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            458999999998          5799999986678999999999999999999999999999999999999999888899


Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++|+|+|++|++|++++|+|+.+|++++
T Consensus       139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~  169 (334)
T PTZ00354        139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATI  169 (334)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999999764

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.81  E-value=3e-19  Score=128.56  Aligned_cols=101  Identities=31%  Similarity=0.432  Sum_probs=92.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      .+.++|+|++|+|          ++||+|+++..+|+|++|+.++.+.++++|+++++++++++++.+.|||+++.+...
T Consensus        51 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~  130 (305)
T cd08270          51 DGAVPGWDAAGVVERAAADGSGPAVGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGP  130 (305)
T ss_pred             CCCcccceeEEEEEEeCCCCCCCCCCCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCC
Confidence            3568999999998          579999998767999999999999999999999999999999999999999966665


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      . +|++++|+|+.|++|++++|+++.+|++|+
T Consensus       131 ~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~  161 (305)
T cd08270         131 L-LGRRVLVTGASGGVGRFAVQLAALAGAHVV  161 (305)
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence            5 599999999889999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1202|consensus

Probab=99.81  E-value=1.5e-20  Score=152.18  Aligned_cols=121  Identities=75%  Similarity=1.283  Sum_probs=116.6

Q ss_pred             CccCCCCCCCCCCCCCCCCCCccCcceEEEEccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHH
Q psy3430           1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAY   80 (121)
Q Consensus         1 ~~~~g~~~~~~~~~~~~~~~~~~G~e~~G~V~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~   80 (121)
                      |+..|+++.+.+|++...-++.+|.|++|+-+-|.||.++.+.-++++-+.++.+.++.+|++.+.+||++.|+.+.|+|
T Consensus      1462 MLasGkL~~DAiPG~~a~qdclLGmEFsGRd~~GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaY 1541 (2376)
T KOG1202|consen 1462 MLASGKLSPDAIPGDLASQDCLLGMEFSGRDASGRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAY 1541 (2376)
T ss_pred             HHhcCCCCcccCCCccchhhheeceeeccccCCCcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeeh
Confidence            67889999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          81 YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        81 ~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++|..++..++||+||||+++|++|++||.+|.+.|++|+.
T Consensus      1542 YALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFT 1582 (2376)
T KOG1202|consen 1542 YALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFT 1582 (2376)
T ss_pred             hhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEE
Confidence            99999999999999999999999999999999999999873

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.80  E-value=6.2e-19  Score=128.08  Aligned_cols=102  Identities=22%  Similarity=0.269  Sum_probs=90.1

Q ss_pred             CCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430          19 QDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        19 ~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~   84 (121)
                      +|.++|||++|+|        ++||+|+...      .+|+|+||+.++++.++++|+++++++++.+++++.|++.++.
T Consensus        57 ~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~  136 (326)
T cd08289          57 YPFIPGIDLAGTVVESNDPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIH  136 (326)
T ss_pred             CCcCcccceeEEEEEcCCCCCCCCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHH
Confidence            4789999999998        5799999874      3689999999999999999999999999999999999999885


Q ss_pred             hhc--C-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRG--K-MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~--~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...  . ...+++|+|+|++|++|++++|+|+.+|++|+
T Consensus       137 ~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~  175 (326)
T cd08289         137 RLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVV  175 (326)
T ss_pred             HHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEE
Confidence            433  2 34578999999999999999999999999876

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.80  E-value=3.4e-19  Score=129.73  Aligned_cols=98  Identities=18%  Similarity=0.114  Sum_probs=81.9

Q ss_pred             CCCCccCcceEEEE---------ccCCEEEEEc---------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHH
Q psy3430          18 GQDCVLGLEFSGRD---------TKGRRVMGLV---------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATA   79 (121)
Q Consensus        18 ~~~~~~G~e~~G~V---------~~Gd~V~~~~---------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta   79 (121)
                      .+|.++|||++|+|         ++||||+...         ..|+|+||++++++.++++|++++++. +.+ ....||
T Consensus        57 ~~P~i~GhE~~G~V~~vG~~v~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a  134 (308)
T TIGR01202        57 GYPLVPGYESVGRVVEAGPDTGFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATA  134 (308)
T ss_pred             CCCccCcceeEEEEEEecCCCCCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHH
Confidence            46899999999998         6899998632         148999999999999999999999864 444 457899


Q ss_pred             HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |+++.+ . ..++++++|+| +|++|++++|+||++|++++
T Consensus       135 ~~~~~~-~-~~~~~~vlV~G-~G~vG~~a~q~ak~~G~~~v  172 (308)
T TIGR01202       135 RHAVAG-A-EVKVLPDLIVG-HGTLGRLLARLTKAAGGSPP  172 (308)
T ss_pred             HHHHHh-c-ccCCCcEEEEC-CCHHHHHHHHHHHHcCCceE
Confidence            999954 3 34689999998 79999999999999999743

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.80  E-value=6.9e-19  Score=131.12  Aligned_cols=102  Identities=24%  Similarity=0.336  Sum_probs=92.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+...                                              
T Consensus        59 ~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (373)
T cd08299          59 PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHH  138 (373)
T ss_pred             CCCccccccceEEEEEeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCccccc
Confidence            35779999999998          5899998651                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                        ..|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|+ +
T Consensus       139 ~~~~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~  217 (373)
T cd08299         139 FLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASR  217 (373)
T ss_pred             ccCCCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence              2478999999999999999999999999999999999999987889999999999996 79999999999999999 6


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       218 Vi  219 (373)
T cd08299         218 II  219 (373)
T ss_pred             EE
Confidence            76

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.80  E-value=6.2e-19  Score=130.08  Aligned_cols=101  Identities=25%  Similarity=0.342  Sum_probs=90.2

Q ss_pred             CCCCccCcceEEEE---------ccCCEEEEE---------------------------ccCCceeEEEEeCCCCeEEcC
Q psy3430          18 GQDCVLGLEFSGRD---------TKGRRVMGL---------------------------VAARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        18 ~~~~~~G~e~~G~V---------~~Gd~V~~~---------------------------~~~g~~~~~~~v~~~~~~~~p   61 (121)
                      .+|.++|||++|+|         .+||+|+..                           ..+|+|+||++++++.++++|
T Consensus        52 ~~p~i~GhE~~G~V~~vG~~v~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip  131 (349)
T TIGR03201        52 ALPLALGHEISGRVIQAGAGAASWIGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVD  131 (349)
T ss_pred             CCCeeccccceEEEEEeCCCcCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECC
Confidence            45789999999998         279999752                           135899999999999999999


Q ss_pred             C------CCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          62 A------KWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        62 ~------~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +      ++++++++.+.+++.|+|+++. ..++++|++|+|+|+ |++|++++|+|+++|++|+
T Consensus       132 ~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi  194 (349)
T TIGR03201       132 EARLAAAGLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVV  194 (349)
T ss_pred             cccccccCCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEE
Confidence            9      8999999999999999999994 578999999999997 9999999999999999876

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.80  E-value=9.8e-19  Score=130.74  Aligned_cols=100  Identities=30%  Similarity=0.384  Sum_probs=91.1

Q ss_pred             CccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEcCC
Q psy3430          21 CVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEVPA   62 (121)
Q Consensus        21 ~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~p~   62 (121)
                      .++|||++|+|          ++||+|+.+.                            .+|+|+||+++++..++++|+
T Consensus        83 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~  162 (393)
T cd08246          83 HIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPK  162 (393)
T ss_pred             cccccceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCC
Confidence            58999999998          5799998764                            248999999999999999999


Q ss_pred             CCCHHHHhhcchHHHHHHHHHHhh--cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          63 KWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        63 ~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++++.+++++.|||+++...  ++++++++|+|+|++|++|++++|+|+.+|++++
T Consensus       163 ~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv  222 (393)
T cd08246         163 HLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPV  222 (393)
T ss_pred             CCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEE
Confidence            999999999999999999998655  7899999999999889999999999999999865

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.80  E-value=1.6e-19  Score=131.34  Aligned_cols=116  Identities=26%  Similarity=0.304  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCCC---CCCCCCccCcceEEEE----------ccCCEEEEEc-----------------------------
Q psy3430           4 SGKLPPDALPGD---LAGQDCVLGLEFSGRD----------TKGRRVMGLV-----------------------------   41 (121)
Q Consensus         4 ~g~~~~~~~~~~---~~~~~~~~G~e~~G~V----------~~Gd~V~~~~-----------------------------   41 (121)
                      .|.++.|....+   ...+|.++|||++|+|          ++||+|+...                             
T Consensus        37 tGVCHTD~~~~~G~~p~~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~  116 (366)
T COG1062          37 TGVCHTDAHTLSGDDPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGT  116 (366)
T ss_pred             eeccccchhhhcCCCCCCCceecccccccEEEEecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhccccc
Confidence            455555554432   1348999999999998          8999994321                             


Q ss_pred             -------------------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCc
Q psy3430          42 -------------------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAG  102 (121)
Q Consensus        42 -------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g  102 (121)
                                         ..++|+||.++++.+++|++++.+++.++.+.|..+|.+.+..+.+++++|++|.|.| .|
T Consensus       117 m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lG  195 (366)
T COG1062         117 MPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LG  195 (366)
T ss_pred             ccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-cc
Confidence                               0149999999999999999999999999999999999999999999999999999999 99


Q ss_pred             hHHHHHHHHHHHCCC-EEe
Q psy3430         103 GLGQAAISIALHMGC-TVY  120 (121)
Q Consensus       103 ~vG~~aiqla~~~G~-~vi  120 (121)
                      ++|++++|-|+..|+ ++|
T Consensus       196 gVGlaaI~gA~~agA~~Ii  214 (366)
T COG1062         196 GVGLAAIQGAKAAGAGRII  214 (366)
T ss_pred             HhHHHHHHHHHHcCCceEE
Confidence            999999999999999 554

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.80  E-value=1.6e-18  Score=122.03  Aligned_cols=102  Identities=32%  Similarity=0.425  Sum_probs=92.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-----------------------cCCceeEEEEeCCCCeEEcCCCC
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-----------------------AARSLATTVLADPSFLWEVPAKW   64 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-----------------------~~g~~~~~~~v~~~~~~~~p~~~   64 (121)
                      .+|.++|+|++|+|          ++||+|++..                       .+|+|++|+.++.+.++++|+++
T Consensus        28 ~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  107 (271)
T cd05188          28 KLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGL  107 (271)
T ss_pred             CCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCC
Confidence            35779999999998          6899999875                       25899999999999999999999


Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++.++.++.|||+++.+...++++++|+|+|+++ +|++++|+++..|.+|+
T Consensus       108 ~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~  162 (271)
T cd05188         108 SLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVI  162 (271)
T ss_pred             CHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEE
Confidence            99999999999999999998888789999999999776 99999999999999876

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.79  E-value=2.2e-18  Score=124.90  Aligned_cols=102  Identities=23%  Similarity=0.275  Sum_probs=90.1

Q ss_pred             CCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430          19 QDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        19 ~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~   84 (121)
                      +|.++|||++|+|        ++||+|++..      .+|+|+||++++++.++++|+++++++++.+++.+.|+|+++.
T Consensus        57 ~~~~~g~e~~G~v~~~~~~~~~~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~  136 (325)
T cd05280          57 YPHTPGIDAAGTVVSSDDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVH  136 (325)
T ss_pred             CCCccCcccEEEEEEeCCCCCCCCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHH
Confidence            4678999999997        5899999753      3689999999999999999999999999999999999999986


Q ss_pred             hhcCC--C-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKM--R-PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~--~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...+.  + .+++|+|+|++|++|++++|+|+.+|++|+
T Consensus       137 ~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~  175 (325)
T cd05280         137 RLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVV  175 (325)
T ss_pred             HHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEE
Confidence            55433  5 457999999999999999999999999876

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.79  E-value=1.4e-18  Score=127.23  Aligned_cols=101  Identities=28%  Similarity=0.349  Sum_probs=90.6

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEE----------------------------EccCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMG----------------------------LVAARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~----------------------------~~~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||++|+|          ++||+|+.                            +..+|+++||+.++++.+++
T Consensus        53 ~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~  132 (333)
T cd08296          53 SYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALAR  132 (333)
T ss_pred             CCCcccCcceeEEEEEECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEe
Confidence            34679999999998          57999976                            22358999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+++++++++.+++++.|+|+++.. .+++++++|+|+| +|++|++++|+|+++|++|+
T Consensus       133 lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi  191 (333)
T cd08296         133 IPDDLDAAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTV  191 (333)
T ss_pred             CCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence            99999999999999999999999954 4899999999999 89999999999999999876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.79  E-value=2.3e-18  Score=124.71  Aligned_cols=102  Identities=33%  Similarity=0.388  Sum_probs=92.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc--CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA--ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~--~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      ..|.++|+|++|+|          ++||+|+++..  +|+|++|+.++.+.++++|+++++++++.+++.+.|+| ++.+
T Consensus        58 ~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~  136 (324)
T cd08244          58 ELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLD  136 (324)
T ss_pred             CCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHH
Confidence            34678999999998          57999998752  58999999999999999999999999999999999995 4557


Q ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+++++++|+|+|++|++|++++|+|+.+|++|+
T Consensus       137 ~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~  171 (324)
T cd08244         137 LATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVV  171 (324)
T ss_pred             hcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEE
Confidence            88999999999999999999999999999999876

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.79  E-value=1.3e-18  Score=126.95  Aligned_cols=101  Identities=26%  Similarity=0.249  Sum_probs=86.2

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEEEcc-CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMGLVA-ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      .+|.++|||++|+|           ++||+|+++.. +|+|+||++++++.++++|+++++++++++++.+.|+|..+ +
T Consensus        59 ~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~  137 (324)
T cd08291          59 ALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-E  137 (324)
T ss_pred             CCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-H
Confidence            35789999999997           37999998754 38999999999999999999999999998888999998655 5


Q ss_pred             hcCCCCCCEEEEe-cCCchHHHHHHHHHHHCCCEEe
Q psy3430          86 RGKMRPGESLLVH-AGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        86 ~~~~~~g~~vli~-ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+. ++++++|+ +++|++|++++|+||.+|++|+
T Consensus       138 ~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi  172 (324)
T cd08291         138 TARE-EGAKAVVHTAAASALGRMLVRLCKADGIKVI  172 (324)
T ss_pred             hhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEE
Confidence            5555 55566665 7899999999999999999876

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.79  E-value=1.9e-18  Score=125.15  Aligned_cols=102  Identities=25%  Similarity=0.269  Sum_probs=94.4

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      .|.++|+|++|+|          ++||+|+++..+|+|++|+.++.+.++++|+++++++++.+++...|+|+++.+..+
T Consensus        56 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~  135 (323)
T cd05282          56 LPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLK  135 (323)
T ss_pred             CCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhcc
Confidence            4679999999998          579999998645899999999999999999999999999999999999999988888


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++|+|+|++|.+|++++|+|+++|++++
T Consensus       136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~  167 (323)
T cd05282         136 LPPGDWVIQNAANSAVGRMLIQLAKLLGFKTI  167 (323)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHCCCeEE
Confidence            99999999999999999999999999999876

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.79  E-value=2.7e-18  Score=126.85  Aligned_cols=102  Identities=28%  Similarity=0.311  Sum_probs=90.3

Q ss_pred             CCCCccCcceEEEE----------------ccCCEEEEEc----------------------------------cCCcee
Q psy3430          18 GQDCVLGLEFSGRD----------------TKGRRVMGLV----------------------------------AARSLA   47 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------------~~Gd~V~~~~----------------------------------~~g~~~   47 (121)
                      .+|.++|||++|+|                ++||+|+.+.                                  ..|+|+
T Consensus        53 ~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a  132 (361)
T cd08231          53 PLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYA  132 (361)
T ss_pred             CCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccc
Confidence            46789999999997                2599998762                                  248999


Q ss_pred             EEEEeCCC-CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          48 TTVLADPS-FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        48 ~~~~v~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ||++++++ .++++|+++++++++.+++++.|||+++.+....++|++|||+| +|++|++++|+|+.+|+ +|+
T Consensus       133 ~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~  206 (361)
T cd08231         133 EHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVI  206 (361)
T ss_pred             eEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            99999996 79999999999999998899999999997777777999999997 79999999999999999 775

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.79  E-value=1.7e-18  Score=126.62  Aligned_cols=102  Identities=25%  Similarity=0.299  Sum_probs=91.0

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|+|++|+|          ++||+|+++.                           .+|+|+||+.++++.++++
T Consensus        56 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~  135 (340)
T cd05284          56 KLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKL  135 (340)
T ss_pred             CCCeecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEEC
Confidence            34689999999998          5799998763                           2589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      |+++++++++.++..+.|||+++.+. .+++++++|||+| ++++|++++|+|+.+| .+|+
T Consensus       136 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~  196 (340)
T cd05284         136 PRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVI  196 (340)
T ss_pred             CCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEE
Confidence            99999999999999999999999766 5788999999999 6679999999999999 6775

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.79  E-value=2.3e-18  Score=126.27  Aligned_cols=103  Identities=29%  Similarity=0.417  Sum_probs=93.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~   84 (121)
                      ..|.++|||++|+|          ++||+|+++.   ..|+|++|+.++++.++++|+++++++++.+++++.|+|+++.
T Consensus        72 ~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~  151 (350)
T cd08248          72 EFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALV  151 (350)
T ss_pred             CCCeeecceeEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHH
Confidence            45779999999998          5799999875   2589999999999999999999999999999999999999997


Q ss_pred             hhcCCCC----CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRP----GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~----g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +..++++    |++|+|+|++|++|++++++|+.+|++|+
T Consensus       152 ~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~  191 (350)
T cd08248         152 NVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVT  191 (350)
T ss_pred             HhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEE
Confidence            7777764    99999999999999999999999999876

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.79  E-value=3.1e-18  Score=124.52  Aligned_cols=102  Identities=32%  Similarity=0.476  Sum_probs=95.1

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      +|.++|+|++|+|          ++||+|+++..+|+|++|+.++.+.++++|+++++++++.++.++.|+|+++.+..+
T Consensus        57 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~  136 (331)
T cd08273          57 LPFTPGYDLVGRVDALGSGVTGFEVGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAK  136 (331)
T ss_pred             CCcccccceEEEEEEeCCCCccCCCCCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcC
Confidence            5778999999998          579999998766899999999999999999999999999999999999999988889


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++|++++|+|++|++|++++|+|+.+|++|+
T Consensus       137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~  168 (331)
T cd08273         137 VLTGQRVLIHGASGGVGQALLELALLAGAEVY  168 (331)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.78  E-value=3.6e-18  Score=124.03  Aligned_cols=103  Identities=21%  Similarity=0.328  Sum_probs=91.5

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      ..|.++|||++|+|        ++||+|+...      .+|+|++|+.++++.++++|+++++++++.++..+.|++.++
T Consensus        55 ~~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~  134 (323)
T TIGR02823        55 SYPMIPGIDAAGTVVSSEDPRFREGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSV  134 (323)
T ss_pred             CCCccceeeeEEEEEecCCCCCCCCCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence            34778999999998        5899999864      358999999999999999999999999999999999999887


Q ss_pred             Hhh--cCCCCCC-EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          84 IVR--GKMRPGE-SLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        84 ~~~--~~~~~g~-~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...  ..+++++ +|+|+|++|.+|++++|+|+++|++++
T Consensus       135 ~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi  174 (323)
T TIGR02823       135 MALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVV  174 (323)
T ss_pred             HHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEE
Confidence            544  3488998 999999889999999999999999875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.78  E-value=2e-18  Score=129.70  Aligned_cols=101  Identities=23%  Similarity=0.306  Sum_probs=85.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-------------------------------------cCCceeEEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-------------------------------------AARSLATTV   50 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------------------------~~g~~~~~~   50 (121)
                      .+|.++|||++|+|          ++||||....                                     .+|+|+||+
T Consensus        60 ~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~  139 (393)
T TIGR02819        60 PTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYV  139 (393)
T ss_pred             CCCccccceeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEE
Confidence            35889999999998          7899996520                                     248999999


Q ss_pred             EeCCC--CeEEcCCCCCH----HHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          51 LADPS--FLWEVPAKWTL----EEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        51 ~v~~~--~~~~~p~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++.  .++++|++++.    .+++++..++.|+|+++ +..++++|++|+|.| +|++|++++|+|+.+|++++
T Consensus       140 ~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~v  213 (393)
T TIGR02819       140 MVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAVV  213 (393)
T ss_pred             EechhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceE
Confidence            99964  69999998753    34678888999999998 568899999999976 79999999999999999754

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG0022|consensus

Probab=99.78  E-value=1e-18  Score=126.05  Aligned_cols=102  Identities=22%  Similarity=0.273  Sum_probs=93.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|+++|||.+|+|          ++||+|+.+.                                              
T Consensus        60 ~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iy  139 (375)
T KOG0022|consen   60 LFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIY  139 (375)
T ss_pred             cCceEecccceeEEEEecCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceE
Confidence            57999999999999          8999995432                                              


Q ss_pred             ---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-
Q psy3430          42 ---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-  117 (121)
Q Consensus        42 ---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-  117 (121)
                         .-.+|+||.++++..+.++++..+++.++.+.+...|+|.+..+.+++++|+++.|+| .|++|++++|-||+.|| 
T Consensus       140 Hfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAs  218 (375)
T KOG0022|consen  140 HFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGAS  218 (375)
T ss_pred             EecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcc
Confidence               0148999999999999999999999999999999999999998999999999999999 99999999999999999 


Q ss_pred             EEe
Q psy3430         118 TVY  120 (121)
Q Consensus       118 ~vi  120 (121)
                      ++|
T Consensus       219 rII  221 (375)
T KOG0022|consen  219 RII  221 (375)
T ss_pred             cEE
Confidence            665

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.78  E-value=2.4e-18  Score=125.12  Aligned_cols=101  Identities=30%  Similarity=0.448  Sum_probs=91.7

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p   61 (121)
                      +|.++|||++|+|          ++||+|+.+.                           ..|+|++|++++++.++++|
T Consensus        54 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p  133 (325)
T cd08264          54 MPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIP  133 (325)
T ss_pred             CCeecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCC
Confidence            4668999999998          5899998652                           35899999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++++.+++++.|+|+++. ..++++|++|+|+|++|++|++++++|+++|++|+
T Consensus       134 ~~~~~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~  191 (325)
T cd08264         134 DSISDELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI  191 (325)
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEE
Confidence            99999999999999999999995 48999999999999889999999999999999876

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.78  E-value=3.8e-18  Score=126.67  Aligned_cols=100  Identities=23%  Similarity=0.318  Sum_probs=90.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+...                                              
T Consensus        52 ~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  131 (365)
T cd05279          52 PLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHH  131 (365)
T ss_pred             CCCcccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCcccc
Confidence            35679999999998          5799998752                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                        ..|+|+||+.+++..++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|++
T Consensus       132 ~~~~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~  209 (365)
T cd05279         132 FLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGAS  209 (365)
T ss_pred             ccccccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence              1268999999999999999999999999999999999999988889999999999996 799999999999999985

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08251 polyketide_synthase polyketide synthase

Probab=99.78  E-value=4.5e-18  Score=121.53  Aligned_cols=102  Identities=28%  Similarity=0.417  Sum_probs=93.7

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc--cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV--AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~--~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      .+|.++|+|++|+|          ++||+|+++.  .+|+|++|++++++.++++|+++++++++.++.++.|+|+++ +
T Consensus        36 ~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~  114 (303)
T cd08251          36 PYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-A  114 (303)
T ss_pred             CCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-H
Confidence            35779999999998          5799999874  358999999999999999999999999999999999999998 6


Q ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..++++|++++|+++++++|++++|+++++|++++
T Consensus       115 ~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~  149 (303)
T cd08251         115 RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIY  149 (303)
T ss_pred             hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence            88999999999999999999999999999999876

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.78  E-value=4.9e-18  Score=123.27  Aligned_cols=101  Identities=28%  Similarity=0.356  Sum_probs=92.6

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p   61 (121)
                      .|.++|+|++|+|          ++||+|+++.                           ..|+|++|++++...++++|
T Consensus        54 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  133 (332)
T cd08259          54 YPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLP  133 (332)
T ss_pred             CCeeccccceEEEEEECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECC
Confidence            4578999999998          5799999874                           15899999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++++.+++++.|||+++.. .+++++++++|+|++|++|++++++++..|++|+
T Consensus       134 ~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~  191 (332)
T cd08259         134 DNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVI  191 (332)
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEE
Confidence            999999999999999999999966 8999999999999999999999999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.78  E-value=3.8e-18  Score=125.65  Aligned_cols=99  Identities=28%  Similarity=0.393  Sum_probs=88.1

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      +|.++|+|++|+|          ++||+|+...                            .+|+|+||+.+++..++++
T Consensus        64 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  143 (351)
T cd08233          64 APVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKL  143 (351)
T ss_pred             CCceecccceEEEEEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEEC
Confidence            5789999999998          6899998621                            1589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      |+++++++++.+ .+..|||+++ +..++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus       144 P~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~  201 (351)
T cd08233         144 PDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKII  201 (351)
T ss_pred             cCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            999999988765 6888999999 788999999999998 69999999999999999 665

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.78  E-value=3.3e-18  Score=125.92  Aligned_cols=98  Identities=21%  Similarity=0.298  Sum_probs=85.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      ..|.++|||++|+|          ++||+|+.+.                           .+|+|+||++++++.++++
T Consensus        52 ~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l  131 (347)
T PRK10309         52 YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFAL  131 (347)
T ss_pred             CCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEEC
Confidence            35789999999998          6899998752                           2589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      |+++++++++.+. +..++++++ +..++++|++|+|+| +|++|++++|+|+.+|++
T Consensus       132 P~~~s~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~  186 (347)
T PRK10309        132 PTDMPIEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIG-AGTIGLLAIQCAVALGAK  186 (347)
T ss_pred             cCCCCHHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            9999999987663 556688886 677899999999997 699999999999999996

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.77  E-value=6e-18  Score=119.60  Aligned_cols=101  Identities=47%  Similarity=0.781  Sum_probs=93.9

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      +|.++|+|++|+|          ++||+|+++. +|+|+||+.++.+.++++|+++++.+++.++++..|++.++.+..+
T Consensus        27 ~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~  105 (293)
T cd05195          27 DETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLAR  105 (293)
T ss_pred             CCCccceeeeEEEEeecCCccCCCCCCEEEEEe-cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhc
Confidence            5779999999997          5799999875 4889999999999999999999999999999999999999988889


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++|++|+|+|+.|++|++++|+++.+|++++
T Consensus       106 ~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~  137 (293)
T cd05195         106 LQKGESVLIHAAAGGVGQAAIQLAQHLGAEVF  137 (293)
T ss_pred             cCCCCEEEEecCCCHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999876

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.77  E-value=6.5e-18  Score=119.48  Aligned_cols=100  Identities=49%  Similarity=0.809  Sum_probs=93.2

Q ss_pred             CCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCC
Q psy3430          20 DCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKM   89 (121)
Q Consensus        20 ~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~   89 (121)
                      |.++|+|++|+|          ++||+|+++.. |+|+||+.++.+.++++|+++++++++.+.++..|++.++.+..++
T Consensus        24 ~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~-g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~  102 (288)
T smart00829       24 EAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP-GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARL  102 (288)
T ss_pred             CCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC-CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCC
Confidence            578999999998          58999998754 8899999999999999999999999999999999999998788899


Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++|++|+|+|+.|++|++++|+++.+|++|+
T Consensus       103 ~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~  133 (288)
T smart00829      103 RPGESVLIHAAAGGVGQAAIQLAQHLGAEVF  133 (288)
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999999876

Enoylreductase in Polyketide synthases.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.77  E-value=4.3e-18  Score=122.12  Aligned_cols=102  Identities=37%  Similarity=0.585  Sum_probs=95.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      .|.++|+|++|+|          ++||+|+++..+|+|++|+.++++.++++|+++++.+++.++.++.++|+++.+..+
T Consensus        57 ~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~  136 (323)
T cd05276          57 ASDILGLEVAGVVVAVGPGVTGWKVGDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGG  136 (323)
T ss_pred             CCCcccceeEEEEEeeCCCCCCCCCCCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcC
Confidence            4678999999997          579999998777899999999999999999999999999999999999999988889


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++++|+|+++++|++++++++..|++++
T Consensus       137 ~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~  168 (323)
T cd05276         137 LKAGETVLIHGGASGVGTAAIQLAKALGARVI  168 (323)
T ss_pred             CCCCCEEEEEcCcChHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999875

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.77  E-value=5e-18  Score=123.56  Aligned_cols=102  Identities=26%  Similarity=0.294  Sum_probs=93.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG   87 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~   87 (121)
                      .|.++|+|++|+|          ++||+|+... ..|+|++|+.++.+.++++|+++++++++.++..+.|+|.++.+..
T Consensus        57 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~  136 (327)
T PRK10754         57 LPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTY  136 (327)
T ss_pred             CCCccCcceEEEEEEeCCCCCCCCCCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            4668999999998          5799998653 3589999999999999999999999999999999999999998888


Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++|++++|+|+.|.+|++++|+||.+|++++
T Consensus       137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~  169 (327)
T PRK10754        137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLI  169 (327)
T ss_pred             CCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEE
Confidence            999999999999999999999999999999875

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.77  E-value=6.6e-18  Score=125.35  Aligned_cols=102  Identities=28%  Similarity=0.286  Sum_probs=91.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------------------   40 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------------------   40 (121)
                      .+|.++|+|++|+|          ++||+|+..                                               
T Consensus        54 ~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (365)
T cd08278          54 PLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHG  133 (365)
T ss_pred             CCCcccccceeEEEEEeCCCcccCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCccccc
Confidence            35779999999998          689999841                                               


Q ss_pred             --ccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          41 --VAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        41 --~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                        ...|+|+||+.++++.++++|+++++++++.+++++.||+.++.+..+++++++|+|+| +|++|++++|+|+++|++
T Consensus       134 ~~~~~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~G~~  212 (365)
T cd08278         134 HFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIAGCT  212 (365)
T ss_pred             ccccccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence              12378999999999999999999999999999999999999988888999999999997 699999999999999994


Q ss_pred             -Ee
Q psy3430         119 -VY  120 (121)
Q Consensus       119 -vi  120 (121)
                       ++
T Consensus       213 ~v~  215 (365)
T cd08278         213 TII  215 (365)
T ss_pred             eEE
Confidence             54

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.77  E-value=4.1e-18  Score=125.15  Aligned_cols=102  Identities=30%  Similarity=0.493  Sum_probs=92.7

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEcc--------CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHH
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVA--------ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAY   80 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~--------~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~   80 (121)
                      .+.++|+|++|+|          ++||+|+++..        +|+|++|++++.+.++++|+++++++++.+++.+.|+|
T Consensus        54 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~  133 (339)
T cd08249          54 YPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAA  133 (339)
T ss_pred             CCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHH
Confidence            4678999999998          57999998854        48999999999999999999999999999999999999


Q ss_pred             HHHHhhcCC----------CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          81 YSLIVRGKM----------RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        81 ~~l~~~~~~----------~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++.+..++          +++++++|+|++|++|++++|+|+.+|++|+
T Consensus       134 ~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~  183 (339)
T cd08249         134 LALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVI  183 (339)
T ss_pred             HHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEE
Confidence            998766655          7999999999999999999999999999876

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.76  E-value=1e-17  Score=119.49  Aligned_cols=97  Identities=26%  Similarity=0.260  Sum_probs=88.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG   87 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~   87 (121)
                      ++|.++|+|++|+|          ++||+|+.+   ++|++|++++.+.++++|+++++++++.+ .++.|+|+++ +..
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~---~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~   93 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDA   93 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec---CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-Hhc
Confidence            36789999999998          579999987   46999999999999999999999998888 8899999998 578


Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      +++++++++|+| +|++|++++|+|+.+|++ |+
T Consensus        94 ~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi  126 (277)
T cd08255          94 EPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVV  126 (277)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEE
Confidence            999999999997 799999999999999997 65

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.76  E-value=9.5e-18  Score=123.10  Aligned_cols=101  Identities=31%  Similarity=0.450  Sum_probs=91.5

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCC--CeEE
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPS--FLWE   59 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~--~~~~   59 (121)
                      +|.++|+|++|+|          ++||+|++                           +..+|+|++|+.+++.  .+++
T Consensus        54 ~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~  133 (345)
T cd08260          54 LPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVR  133 (345)
T ss_pred             CCeeeccceeEEEEEECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEE
Confidence            4678999999998          58999986                           3336899999999974  8999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+++++++++.++.++.|||+++.+..+++++++|+|+| +|++|++++|+|+.+|++|+
T Consensus       134 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi  193 (345)
T cd08260         134 LPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVI  193 (345)
T ss_pred             CCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999999999998888999999999999 79999999999999999876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.76  E-value=9.5e-18  Score=122.41  Aligned_cols=102  Identities=29%  Similarity=0.402  Sum_probs=92.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      ++|.++|+|++|+|          ++||+|++..                           .+|+|++|+.++.+.++++
T Consensus        53 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  132 (334)
T PRK13771         53 KYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKV  132 (334)
T ss_pred             CCCeeccccceEEEEEeCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEEC
Confidence            34678999999998          5799998864                           1589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |+++++.+++.+.+.+.|+|+++.+. +++++++|+|+|++|.+|++++|+|+.+|++++
T Consensus       133 p~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi  191 (334)
T PRK13771        133 PPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVI  191 (334)
T ss_pred             CCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999665 899999999999889999999999999999876

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.76  E-value=5.4e-18  Score=125.29  Aligned_cols=99  Identities=23%  Similarity=0.231  Sum_probs=80.0

Q ss_pred             CCCccCcceEEEE---------ccCCEEEEEc------------------------------cCCceeEEEEeCCCCeEE
Q psy3430          19 QDCVLGLEFSGRD---------TKGRRVMGLV------------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        19 ~~~~~G~e~~G~V---------~~Gd~V~~~~------------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      +|.++|||++|+|         ++||+|+...                              .+|+|+||++++++.+++
T Consensus        57 ~p~i~G~e~~G~V~~vG~~~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~  136 (355)
T cd08230          57 DFLVLGHEALGVVEEVGDGSGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVK  136 (355)
T ss_pred             CCeeeccccceEEEEecCCCCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEE
Confidence            4689999999999         5899997642                              248899999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHh------hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIV------RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~------~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++++  +++++..++.+++.++..      ..++++|++|+|+| +|++|++++|+||++|++|+
T Consensus       137 ~P~~~~--~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi  200 (355)
T cd08230         137 VPPSLA--DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLRGFEVY  200 (355)
T ss_pred             CCCCCC--cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            999999  444555666665554422      23367899999998 69999999999999999876

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.76  E-value=1.4e-17  Score=119.79  Aligned_cols=103  Identities=28%  Similarity=0.376  Sum_probs=94.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYS   82 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~   82 (121)
                      ..|.++|||++|+|          ++||+|+.+.     ..|++++|+.++++.++++|+++++++++.+++++.|+|+.
T Consensus        56 ~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~  135 (325)
T cd08253          56 PLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRA  135 (325)
T ss_pred             CCCeecccceEEEEEeeCCCCCCCCCCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHH
Confidence            45778999999998          5799999875     35899999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          83 LIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        83 l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+..++++|++++|+|+++++|++++++++.+|++|+
T Consensus       136 l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~  173 (325)
T cd08253         136 LFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVI  173 (325)
T ss_pred             HHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEE
Confidence            98889999999999999999999999999999999876

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.76  E-value=9.4e-18  Score=122.12  Aligned_cols=100  Identities=30%  Similarity=0.332  Sum_probs=90.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG   87 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~   87 (121)
                      .+|.++|+|++|+|          ++||+|+++. .|+|++|+.++.+.++++|++  +.+++.++.++.|+|+++.+..
T Consensus        59 ~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~  135 (329)
T cd08250          59 KPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVG  135 (329)
T ss_pred             CCCcccCceeEEEEEEECCCCCCCCCCCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhc
Confidence            45779999999998          4799999875 388999999999999999997  3467789999999999998888


Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++++|+|++|.+|++++|+|+.+|++|+
T Consensus       136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~  168 (329)
T cd08250         136 EMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVI  168 (329)
T ss_pred             CCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEE
Confidence            999999999999999999999999999999875

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.76  E-value=9.8e-18  Score=125.75  Aligned_cols=99  Identities=30%  Similarity=0.379  Sum_probs=90.2

Q ss_pred             ccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEcCCC
Q psy3430          22 VLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEVPAK   63 (121)
Q Consensus        22 ~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~p~~   63 (121)
                      ++|||++|+|          ++||+|+...                            .+|+|+||++++++.++++|++
T Consensus        80 v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~  159 (398)
T TIGR01751        80 IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKH  159 (398)
T ss_pred             ecccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCC
Confidence            7999999998          5799998753                            2589999999999999999999


Q ss_pred             CCHHHHhhcchHHHHHHHHHHh--hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          64 WTLEEASTIPVVYATAYYSLIV--RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++.+..+..|+|+++..  ..++++|++++|+|++|++|++++|+|+++|++++
T Consensus       160 l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi  218 (398)
T TIGR01751       160 LTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV  218 (398)
T ss_pred             CCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999999855  57889999999999889999999999999999865

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.76  E-value=1.3e-17  Score=121.55  Aligned_cols=102  Identities=31%  Similarity=0.397  Sum_probs=93.2

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      .|.++|+|++|+|          ++||+|+...   .+|+|++|+.++.+.++++|+++++++++.+++...|+|+++.+
T Consensus        59 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~  138 (336)
T cd08252          59 QPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFD  138 (336)
T ss_pred             CCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHH
Confidence            4568999999998          5799999864   35899999999999999999999999999999999999999888


Q ss_pred             hcCCCC-----CCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          86 RGKMRP-----GESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        86 ~~~~~~-----g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ..++++     |++|+|+|++|++|++++|+|+.+| ++|+
T Consensus       139 ~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~  179 (336)
T cd08252         139 RLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVI  179 (336)
T ss_pred             hcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEE
Confidence            888887     9999999999999999999999999 8876

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.76  E-value=6.5e-18  Score=123.49  Aligned_cols=100  Identities=25%  Similarity=0.352  Sum_probs=90.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~~   60 (121)
                      .|.++|||++|+|          ++||+|+..                            ..+|+|+||+.++.+.++++
T Consensus        53 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~  132 (338)
T PRK09422         53 TGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKV  132 (338)
T ss_pred             CCccCCcccceEEEEECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeC
Confidence            3678999999998          579999861                            12589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHH-CCCEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALH-MGCTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~-~G~~vi  120 (121)
                      |+++++++++.++..+.|+|+++ +..++++|++|+|+| +|++|++++|+|+. +|++|+
T Consensus       133 p~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~  191 (338)
T PRK09422        133 PEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVI  191 (338)
T ss_pred             CCCCCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEE
Confidence            99999999999999999999998 788999999999999 79999999999998 499876

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.76  E-value=1.5e-17  Score=120.73  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=88.6

Q ss_pred             CCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430          19 QDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        19 ~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~   84 (121)
                      +|.++|+|++|+|        ++||+|+++.      .+|+|++|++++.+.++++|+++++++++.++..++|++.++.
T Consensus        57 ~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~  136 (324)
T cd08288          57 FPLVPGIDLAGTVVESSSPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVM  136 (324)
T ss_pred             CCCccccceEEEEEeCCCCCCCCCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHH
Confidence            4678899999997        5799999863      2589999999999999999999999999999999999987764


Q ss_pred             --hhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 --VRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 --~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                        +..+.+ ++++|+|+|++|++|++++|+|+++|++|+
T Consensus       137 ~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi  175 (324)
T cd08288         137 ALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVV  175 (324)
T ss_pred             HHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence              123445 678999999999999999999999999876

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.76  E-value=1.3e-17  Score=120.09  Aligned_cols=102  Identities=35%  Similarity=0.597  Sum_probs=94.8

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      +|.++|||++|+|          ++||+|+++..+|+|++|+.++.+.++++|+++++.+++.++.++.|+|+++.+..+
T Consensus        57 ~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~  136 (325)
T TIGR02824        57 ASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGG  136 (325)
T ss_pred             CCCCccceeEEEEEEeCCCCCCCCCCCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcC
Confidence            3578999999998          579999998766899999999999999999999999999999999999999888899


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++++|+|+++++|++++++++.+|++|+
T Consensus       137 ~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~  168 (325)
T TIGR02824       137 LKAGETVLIHGGASGIGTTAIQLAKAFGARVF  168 (325)
T ss_pred             CCCCCEEEEEcCcchHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.76  E-value=1.4e-17  Score=122.60  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=89.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc------------------------------cCCceeEEEEeCCC--
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV------------------------------AARSLATTVLADPS--   55 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~------------------------------~~g~~~~~~~v~~~--   55 (121)
                      .+|.++|||++|+|          ++||+|+...                              .+|+|+||++++.+  
T Consensus        52 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~  131 (351)
T cd08285          52 RHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADA  131 (351)
T ss_pred             CCCcccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhC
Confidence            35789999999998          5799998742                              25899999999974  


Q ss_pred             CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      .++++|+++++++++.++..+.|+++++ +..++++|++|||+| +|++|++++|+|+.+|++ ++
T Consensus       132 ~~~~lP~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~~v~  195 (351)
T cd08285         132 NLAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAGRII  195 (351)
T ss_pred             ceEECCCCCCHHHhhhhccchhhHHHHH-HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            8999999999999999999999999997 778999999999997 799999999999999994 54

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=99.76  E-value=1.5e-17  Score=121.77  Aligned_cols=97  Identities=18%  Similarity=0.177  Sum_probs=84.8

Q ss_pred             CCCccCcceEEEE----------ccCCEEE---------------------------EEccCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVM---------------------------GLVAARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~---------------------------~~~~~g~~~~~~~v~~~~~~~~p   61 (121)
                      +|.++|||++|+|          ++||+|+                           ++..+|+|+||+.++.+.++++|
T Consensus        53 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  132 (339)
T PRK10083         53 YPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIP  132 (339)
T ss_pred             CCcccccceEEEEEEECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECc
Confidence            5789999999998          6799998                           44446899999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHH-CCCE
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALH-MGCT  118 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~-~G~~  118 (121)
                      +++++++++ +..++.+++++. +..++++|++|+|+| +|++|++++|+|+. +|++
T Consensus       133 ~~~~~~~a~-~~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~  187 (339)
T PRK10083        133 DAIADQYAV-MVEPFTIAANVT-GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVK  187 (339)
T ss_pred             CCCCHHHHh-hhchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCC
Confidence            999998875 667788888654 788999999999999 79999999999996 6985

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.75  E-value=2.8e-17  Score=118.47  Aligned_cols=102  Identities=33%  Similarity=0.507  Sum_probs=93.9

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEcc---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVA---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      .+..+|+|++|+|          ++||+|+....   +|+|++|..++.+.++++|+++++++++.+++++.++|+++.+
T Consensus        58 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~  137 (319)
T cd08267          58 FPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRD  137 (319)
T ss_pred             CCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence            4668999999998          57999998753   5899999999999999999999999999999999999999988


Q ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+++++++|+|+|++|++|++++++|+.+|++|+
T Consensus       138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~  172 (319)
T cd08267         138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVT  172 (319)
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEE
Confidence            88899999999999889999999999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.75  E-value=2.4e-17  Score=120.65  Aligned_cols=98  Identities=26%  Similarity=0.361  Sum_probs=87.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~~~~~~p   61 (121)
                      +|.++|+|++|+|          ++||+|++                           +...|+|++|+.++++ ++++|
T Consensus        53 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p  131 (337)
T cd08261          53 YPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVP  131 (337)
T ss_pred             CCcccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECC
Confidence            3678999999998          57999987                           3235899999999999 99999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++++.+ ....++++++ +..++++|++|||+| +|.+|++++|+|+.+|++|+
T Consensus       132 ~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~  187 (337)
T cd08261         132 EGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVI  187 (337)
T ss_pred             CCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            99999999776 5778888888 788999999999996 78999999999999999876

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.75  E-value=1.3e-17  Score=122.17  Aligned_cols=101  Identities=24%  Similarity=0.296  Sum_probs=89.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE------------------------------ccCCceeEEEEeCCC--
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL------------------------------VAARSLATTVLADPS--   55 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~------------------------------~~~g~~~~~~~v~~~--   55 (121)
                      .+|.++|+|++|+|          ++||+|+..                              ..+|+|+||++++++  
T Consensus        53 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~  132 (347)
T cd05278          53 KHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADM  132 (347)
T ss_pred             CCCceeccceEEEEEEECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhC
Confidence            45689999999998          679999872                              225899999999987  


Q ss_pred             CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .++++|+++++++++.++.++.|||+++ +..+++++++|+|.| +|++|++++|+|+.+|+ +++
T Consensus       133 ~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v~  196 (347)
T cd05278         133 NLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGAARII  196 (347)
T ss_pred             eEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            8999999999999999999999999998 778999999999976 69999999999999996 664

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.75  E-value=1.9e-17  Score=120.58  Aligned_cols=101  Identities=31%  Similarity=0.434  Sum_probs=91.2

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE------------------E---------ccCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG------------------L---------VAARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~------------------~---------~~~g~~~~~~~v~~~~~~~~p   61 (121)
                      .|.++|+|++|+|          ++||+|+.                  +         ..+|+|++|+.++.+.++++|
T Consensus        56 ~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  135 (338)
T cd08254          56 LPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVP  135 (338)
T ss_pred             CCEeccccccEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECC
Confidence            4678999999998          57999986                  1         125899999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++++.++.++.|||+++.+..+++++++|||.| +|++|++++|+|+.+|++|+
T Consensus       136 ~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~  193 (338)
T cd08254         136 DGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVI  193 (338)
T ss_pred             CCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999998888899999999986 79999999999999999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.75  E-value=1.9e-17  Score=123.82  Aligned_cols=100  Identities=25%  Similarity=0.304  Sum_probs=90.2

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-----------------------------------------------
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-----------------------------------------------   41 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-----------------------------------------------   41 (121)
                      +|.++|||++|+|          ++||+|+...                                               
T Consensus        54 ~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (386)
T cd08283          54 KGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGG  133 (386)
T ss_pred             CCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCC
Confidence            4789999999998          6899998742                                               


Q ss_pred             cCCceeEEEEeCCC--CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          42 AARSLATTVLADPS--FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        42 ~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                      .+|+|+||++++++  .++++|+++++++++.++....|||+++ +..++++|++|+|+| +|++|++++|+|+.+|+ +
T Consensus       134 ~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~g~~~  211 (386)
T cd08283         134 YAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWG-CGPVGLFAARSAKLLGAER  211 (386)
T ss_pred             CCCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCE
Confidence            14899999999987  8999999999999999999999999999 889999999999996 79999999999999998 4


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      ++
T Consensus       212 vi  213 (386)
T cd08283         212 VI  213 (386)
T ss_pred             EE
Confidence            65

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.75  E-value=2.7e-17  Score=120.48  Aligned_cols=101  Identities=25%  Similarity=0.364  Sum_probs=90.8

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+.++|+|++|+|          ++||+|+...                            ..|+|++|+.++++.++++
T Consensus        56 ~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~l  135 (341)
T cd08297          56 LPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPI  135 (341)
T ss_pred             CCccCCcccceEEEEeCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEEC
Confidence            3568899999998          5799998642                            2588999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |+++++++++.++..+.|||+++.. .+++++++|||+|+++++|++++|+|+++|++|+
T Consensus       136 p~~~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~  194 (341)
T cd08297         136 PDGLSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVI  194 (341)
T ss_pred             CCCCCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            9999999999999999999999855 5899999999999888899999999999999876

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.75  E-value=1.9e-17  Score=121.30  Aligned_cols=98  Identities=32%  Similarity=0.452  Sum_probs=87.2

Q ss_pred             CCCccCcceEEEE-----------ccCCEEEEEc-----------------cCCceeEEEEeCCCCeEEcCCCCCHHHHh
Q psy3430          19 QDCVLGLEFSGRD-----------TKGRRVMGLV-----------------AARSLATTVLADPSFLWEVPAKWTLEEAS   70 (121)
Q Consensus        19 ~~~~~G~e~~G~V-----------~~Gd~V~~~~-----------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa   70 (121)
                      +|.++|+|++|+|           ++||+|+++.                 ..|+|+||++++++.++++|+++++++++
T Consensus        63 ~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~  142 (341)
T cd08262          63 ADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA  142 (341)
T ss_pred             CCcccccceeEEEEEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh
Confidence            4778999999987           3799999872                 35899999999999999999999999876


Q ss_pred             hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                       ++.++.|+|+++ ...++++|++|+|+| +|++|.+++|+|+.+|+++
T Consensus       143 -~~~~~~~a~~~~-~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~  188 (341)
T cd08262         143 -LTEPLAVGLHAV-RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGP  188 (341)
T ss_pred             -hhhhHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence             677889999996 889999999999997 6999999999999999863

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.75  E-value=2.8e-17  Score=119.71  Aligned_cols=100  Identities=26%  Similarity=0.353  Sum_probs=91.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      .|.++|||++|+|          ++||+|+...                            .+|+|+||+.++.+.++++
T Consensus        58 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  137 (329)
T cd08298          58 LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPI  137 (329)
T ss_pred             CCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEEC
Confidence            4679999999998          5799997521                            2589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |+++++.+++.+++++.|||+++ +..+++++++++|+| +|++|++++|+++++|++|+
T Consensus       138 p~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~  195 (329)
T cd08298         138 PEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVF  195 (329)
T ss_pred             CCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence            99999999999999999999999 889999999999997 89999999999999999876

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.75  E-value=2.9e-17  Score=117.71  Aligned_cols=102  Identities=31%  Similarity=0.338  Sum_probs=93.9

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      +|.++|+|++|+|          ++||+|+++...|+|++|+.++.+.++++|+++++++++.++....++++++.+..+
T Consensus        54 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~  133 (320)
T cd05286          54 LPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYP  133 (320)
T ss_pred             CCccCCcceeEEEEEECCCCCCCCCCCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcC
Confidence            4568999999998          579999987534889999999999999999999999999999999999999988899


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++|++|+|+|++|++|++++++++.+|++|+
T Consensus       134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~  165 (320)
T cd05286         134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVI  165 (320)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.75  E-value=1.9e-17  Score=121.31  Aligned_cols=99  Identities=29%  Similarity=0.315  Sum_probs=88.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p   61 (121)
                      +|.++|+|++|+|          ++||+|+++.                           ..|+|++|+.++++.++++|
T Consensus        52 ~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP  131 (343)
T cd08236          52 PPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIP  131 (343)
T ss_pred             CCcccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECc
Confidence            4678999999998          5799999862                           35899999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      +++++++++.+ ....|+|+++ ...+++++++|+|+| +|.+|++++|+|+.+|++ ++
T Consensus       132 ~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~  188 (343)
T cd08236         132 DHVDYEEAAMI-EPAAVALHAV-RLAGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVI  188 (343)
T ss_pred             CCCCHHHHHhc-chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            99999998877 5788999999 478899999999997 799999999999999996 65

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.75  E-value=4.7e-17  Score=119.80  Aligned_cols=97  Identities=33%  Similarity=0.472  Sum_probs=88.3

Q ss_pred             CCccCcceEEEE-----------ccCCEEEEEc-----cCCceeEEEEeCCC----CeEEcCCCCCHHHHhhcchHHHHH
Q psy3430          20 DCVLGLEFSGRD-----------TKGRRVMGLV-----AARSLATTVLADPS----FLWEVPAKWTLEEASTIPVVYATA   79 (121)
Q Consensus        20 ~~~~G~e~~G~V-----------~~Gd~V~~~~-----~~g~~~~~~~v~~~----~~~~~p~~~~~~~aa~l~~~~~ta   79 (121)
                      |.++|+|++|+|           ++||+|+++.     ..|+|+||+++++.    .++++|+++++++++.++.+..|+
T Consensus        59 ~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta  138 (352)
T cd08247          59 EKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTA  138 (352)
T ss_pred             CCccCceeEEEEEEeCcccccCCCCCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHH
Confidence            678999999998           3799999875     25899999999987    789999999999999999999999


Q ss_pred             HHHHHhhc-CCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430          80 YYSLIVRG-KMRPGESLLVHAGAGGLGQAAISIALHMG  116 (121)
Q Consensus        80 ~~~l~~~~-~~~~g~~vli~ga~g~vG~~aiqla~~~G  116 (121)
                      |+++.+.. ++++|++++|+|+++++|++++|+|+.+|
T Consensus       139 ~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~  176 (352)
T cd08247         139 YQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHY  176 (352)
T ss_pred             HHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcC
Confidence            99997777 89999999999999999999999999874

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.74  E-value=3.8e-17  Score=119.70  Aligned_cols=100  Identities=28%  Similarity=0.409  Sum_probs=89.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-------------------------------cCCceeEEEEeCCC--
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-------------------------------AARSLATTVLADPS--   55 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------------------~~g~~~~~~~v~~~--   55 (121)
                      +|.++|+|++|+|          ++||+|++..                               .+|+|++|+.+++.  
T Consensus        53 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~  132 (344)
T cd08284          53 PGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADG  132 (344)
T ss_pred             CCcccccceEEEEEeeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccC
Confidence            3678999999998          5799998753                               14889999999964  


Q ss_pred             CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .++++|+++++++++.++.++.|||+++. ..+++++++|+|+| +|++|++++|+|+.+|+ +++
T Consensus       133 ~~~~~p~~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~  196 (344)
T cd08284         133 TLLKLPDGLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVF  196 (344)
T ss_pred             ceEECCCCCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEE
Confidence            99999999999999999999999999994 58899999999996 79999999999999997 665

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.74  E-value=1.5e-17  Score=125.34  Aligned_cols=103  Identities=26%  Similarity=0.281  Sum_probs=81.0

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEEEc----------------cCCceeEEEEeCCC----CeEEcCCCCCH
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMGLV----------------AARSLATTVLADPS----FLWEVPAKWTL   66 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~----------------~~g~~~~~~~v~~~----~~~~~p~~~~~   66 (121)
                      .+|.++|||++|+|           ++||||+...                .+|+|+||++++++    .++++|+++++
T Consensus        61 ~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~  140 (410)
T cd08238          61 KEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGY  140 (410)
T ss_pred             CCCceeccccEEEEEEeCCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCH
Confidence            35789999999998           5799998642                25899999999986    68999999999


Q ss_pred             HHHhhc-chH-HHHHHHHH--------HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC---EEe
Q psy3430          67 EEASTI-PVV-YATAYYSL--------IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC---TVY  120 (121)
Q Consensus        67 ~~aa~l-~~~-~~ta~~~l--------~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~---~vi  120 (121)
                      ++++.+ +.. ..+++.++        .+..++++|++|+|+|++|++|++++|+||.+|+   +|+
T Consensus       141 ~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi  207 (410)
T cd08238         141 AEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLV  207 (410)
T ss_pred             HHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEE
Confidence            988744 211 12234332        2457899999999999899999999999999864   565

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.74  E-value=2.6e-17  Score=121.98  Aligned_cols=102  Identities=22%  Similarity=0.284  Sum_probs=91.7

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------------------   40 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------------------   40 (121)
                      .+|.++|+|++|+|          ++||+|++.                                               
T Consensus        52 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (363)
T cd08279          52 PLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAM  131 (363)
T ss_pred             CCCccccccceEEEEEeCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCcccccc
Confidence            35678999999998          579999873                                               


Q ss_pred             ccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-E
Q psy3430          41 VAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-V  119 (121)
Q Consensus        41 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-v  119 (121)
                      ...|+|+||+.++++.++++|+++++++++.++++..|+|.++.+..+++++++|+|+| +|++|++++|+|+.+|++ |
T Consensus       132 ~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~V  210 (363)
T cd08279         132 CGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRI  210 (363)
T ss_pred             ccCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcE
Confidence            13489999999999999999999999999999999999999988889999999999996 699999999999999996 6


Q ss_pred             e
Q psy3430         120 Y  120 (121)
Q Consensus       120 i  120 (121)
                      +
T Consensus       211 i  211 (363)
T cd08279         211 I  211 (363)
T ss_pred             E
Confidence            4

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.74  E-value=4.6e-17  Score=119.18  Aligned_cols=99  Identities=24%  Similarity=0.319  Sum_probs=87.6

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCC-----
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSF-----   56 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~-----   56 (121)
                      +|.++|+|++|+|          ++||+|+++.                           ..|+|++|++++++.     
T Consensus        53 ~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~  132 (343)
T cd08235          53 PPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGG  132 (343)
T ss_pred             CCcccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEeccccccccc
Confidence            4678999999998          5799999862                           358999999999988     


Q ss_pred             eEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          57 LWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        57 ~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      ++++|+++++++++.+ .++.|||+++. ..++++|++|+|+| +|++|++++|+|+.+|++ ++
T Consensus       133 ~~~lP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~  194 (343)
T cd08235         133 VLKLPDNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVI  194 (343)
T ss_pred             EEECCCCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            9999999999998765 78899999995 45899999999996 799999999999999998 65

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.74  E-value=3.9e-17  Score=118.61  Aligned_cols=100  Identities=33%  Similarity=0.459  Sum_probs=89.8

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEcc----------------------------CCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVA----------------------------ARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~----------------------------~g~~~~~~~v~~~~~~~~   60 (121)
                      .|.++|+|++|+|          ++||+|+....                            +|+|+||+++++..++++
T Consensus        55 ~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l  134 (306)
T cd08258          55 TPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHEL  134 (306)
T ss_pred             CCeeeccceEEEEEEECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEEC
Confidence            4678999999998          57999988641                            489999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |+++++++++ ++....|+|+++....+++++++|+|.| +|++|++++|+|+.+|++|+
T Consensus       135 p~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~  192 (306)
T cd08258         135 PENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVV  192 (306)
T ss_pred             cCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence            9999999886 7778899999998889999999999976 79999999999999999875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.74  E-value=3.6e-17  Score=121.29  Aligned_cols=77  Identities=27%  Similarity=0.416  Sum_probs=72.4

Q ss_pred             CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          43 ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        43 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      +|+|++|+.++++.++++|+++++.+++.++.++.|||+++.+...++++++|+|+| +|++|++++|+|+.+|++ ++
T Consensus       139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi  216 (367)
T cd08263         139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPII  216 (367)
T ss_pred             CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEE
Confidence            589999999999999999999999999999999999999998888889999999996 899999999999999987 54

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.73  E-value=6.1e-17  Score=118.82  Aligned_cols=101  Identities=25%  Similarity=0.323  Sum_probs=89.8

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCC--CeE
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPS--FLW   58 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~--~~~   58 (121)
                      +|.++|||++|+|          ++||+|+...                            .+|+|+||+.+++.  .++
T Consensus        54 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~  133 (345)
T cd08286          54 PGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLY  133 (345)
T ss_pred             CCceecccceEEEEEeccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceE
Confidence            3678999999998          5799998742                            13889999999987  899


Q ss_pred             EcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          59 EVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        59 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ++|+++++++++.++..++|||+++.+..+++++++++|.| +|++|++++|+|+.+| .+++
T Consensus       134 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~  195 (345)
T cd08286         134 KLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKII  195 (345)
T ss_pred             ECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            99999999999999999999999877788999999999987 6999999999999999 6765

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.73  E-value=6e-17  Score=116.76  Aligned_cols=102  Identities=33%  Similarity=0.566  Sum_probs=94.1

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .|.++|+|++|+|          ++||+|+++.     ..|+|++|+.++++.++++|+++++.+++.++....++|+++
T Consensus        57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l  136 (326)
T cd08272          57 LPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGL  136 (326)
T ss_pred             CCcccccceeEEEEEeCCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHH
Confidence            3678999999998          5799999875     258899999999999999999999999999999999999998


Q ss_pred             HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+..+++++++++|+|+++++|++++++++.+|++|+
T Consensus       137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~  173 (326)
T cd08272         137 VDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVY  173 (326)
T ss_pred             HHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEE
Confidence            8889999999999999999999999999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.73  E-value=3.3e-17  Score=120.55  Aligned_cols=102  Identities=24%  Similarity=0.252  Sum_probs=90.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      ..|.++|+|++|+|          ++||+|+++.                           ..|+|++|+.++.+.++++
T Consensus        65 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  144 (350)
T cd08240          65 KLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVD  144 (350)
T ss_pred             CCCcccccceeEEEEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeC
Confidence            34678999999998          5899998762                           3589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      |+++++.+++.+.+.+.|||+++.+...++++++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus       145 p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~  204 (350)
T cd08240         145 PGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANII  204 (350)
T ss_pred             CCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999999997777777999999996 79999999999999999 554

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.73  E-value=7.9e-17  Score=118.18  Aligned_cols=101  Identities=26%  Similarity=0.347  Sum_probs=89.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------ccCCceeEEEEe
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------VAARSLATTVLA   52 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------~~~g~~~~~~~v   52 (121)
                      ++|.++|||++|+|          ++||+|+..                                   ..+|+|+||+.+
T Consensus        52 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v  131 (337)
T cd05283          52 KYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVV  131 (337)
T ss_pred             CCCcccCcceeeEEEEECCCCcccCCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEe
Confidence            34789999999998          589999731                                   235899999999


Q ss_pred             CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++.++++|+++++++++.+.+...|||+++.+ .++++|++++|.| .|++|++++|+++.+|++++
T Consensus       132 ~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~  197 (337)
T cd05283         132 DERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVT  197 (337)
T ss_pred             chhheEECCCCCCHHHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence            999999999999999999999999999999844 4689999999977 79999999999999999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.73  E-value=1.1e-16  Score=115.39  Aligned_cols=102  Identities=31%  Similarity=0.411  Sum_probs=93.7

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      ++.++|||++|+|          ++||+|+++.     .+|++++|+.++++.++++|+++++++++.++.++.|+|.++
T Consensus        57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~  136 (328)
T cd08268          57 LPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGAL  136 (328)
T ss_pred             CCCCCCcceEEEEEeeCCCCCcCCCCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHH
Confidence            4678999999998          5799999874     248899999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+..+++++++++|+|+++++|++++++++..|++++
T Consensus       137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~  173 (328)
T cd08268         137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVI  173 (328)
T ss_pred             HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence            8888999999999999999999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.73  E-value=6.8e-17  Score=120.71  Aligned_cols=101  Identities=33%  Similarity=0.514  Sum_probs=86.6

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||+|+.                           +..+|+|++|+.++++.++++
T Consensus        86 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~l  165 (384)
T cd08265          86 EFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEI  165 (384)
T ss_pred             CCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEEC
Confidence            35789999999998          57999985                           334689999999999999999


Q ss_pred             CCC-------CCHHHHhhcchHHHHHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          61 PAK-------WTLEEASTIPVVYATAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        61 p~~-------~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      |++       ++++ +++++.++.|+|+++... .++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus       166 P~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi  232 (384)
T cd08265         166 NELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVI  232 (384)
T ss_pred             CccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            986       3455 567778999999999666 7899999999996 79999999999999999 665

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.72  E-value=5e-17  Score=118.43  Aligned_cols=100  Identities=29%  Similarity=0.349  Sum_probs=88.9

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE----------------------------EccCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG----------------------------LVAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~----------------------------~~~~g~~~~~~~v~~~~~~~~   60 (121)
                      +|.++|+|++|+|          ++||+|+.                            +...|+|++|+.++++.++++
T Consensus        53 ~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~  132 (330)
T cd08245          53 YPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLL  132 (330)
T ss_pred             CCcccCccceEEEEEECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEEC
Confidence            4678999999998          57999973                            223589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |+++++++++.+...+.|||+++.+ .+++++++|+|+| +|++|++++++|+.+|++|+
T Consensus       133 p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g-~g~iG~~~~~~a~~~G~~v~  190 (330)
T cd08245         133 PDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLG-IGGLGHLAVQYARAMGFETV  190 (330)
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            9999999999999999999999954 7899999999997 67799999999999999876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.72  E-value=1.1e-16  Score=116.09  Aligned_cols=102  Identities=34%  Similarity=0.533  Sum_probs=93.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p   61 (121)
                      .|.++|||++|+|          ++||+|+...                           ..|+|++|++++++.++++|
T Consensus        57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p  136 (342)
T cd08266          57 LPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIP  136 (342)
T ss_pred             CCeecccceEEEEEEeCCCCCCCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCC
Confidence            4678999999998          5799998762                           24789999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++++.++++..++++++.+..+++++++++|+|+++++|++++++++..|++++
T Consensus       137 ~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~  195 (342)
T cd08266         137 DNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVI  195 (342)
T ss_pred             CCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999988889999999999999999999999999999999875

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.72  E-value=7.4e-17  Score=118.49  Aligned_cols=99  Identities=28%  Similarity=0.401  Sum_probs=86.9

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE------------------------E----ccCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG------------------------L----VAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~------------------------~----~~~g~~~~~~~v~~~~~~~~   60 (121)
                      .|.++|+|++|+|          ++||+|++                        +    ...|+|+||++++++.++++
T Consensus        54 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l  133 (343)
T cd05285          54 EPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKL  133 (343)
T ss_pred             CCcccCcceeEEEEeeCCCCCCCCCCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEEC
Confidence            4668999999998          57999986                        2    12589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      |+++++++++.+ .++.++++++ +..++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus       134 P~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~  191 (343)
T cd05285         134 PDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVV  191 (343)
T ss_pred             cCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            999999998766 5788999997 889999999999987 689999999999999987 54

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.72  E-value=9.1e-17  Score=119.65  Aligned_cols=100  Identities=24%  Similarity=0.308  Sum_probs=87.5

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-------------------------------------cCCceeEEEE
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-------------------------------------AARSLATTVL   51 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------------------------~~g~~~~~~~   51 (121)
                      +|.++|||++|+|          ++||+|+...                                     .+|+|+||++
T Consensus        53 ~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~  132 (375)
T cd08282          53 PGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLR  132 (375)
T ss_pred             CCceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEE
Confidence            4789999999998          5899998621                                     1388999999


Q ss_pred             eCCC--CeEEcCCCCCHH---HHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          52 ADPS--FLWEVPAKWTLE---EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        52 v~~~--~~~~~p~~~~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++.+  .++++|++++++   +++.+..++.|+|+++ +..++++|++|+|.| .|++|++++|+|+++|+ +++
T Consensus       133 v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~G~~~vi  205 (375)
T cd08282         133 VPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFG-AGPVGLMAAYSAILRGASRVY  205 (375)
T ss_pred             eecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            9975  899999999998   5678888999999999 888999999999976 79999999999999997 665

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.72  E-value=1.2e-16  Score=116.25  Aligned_cols=98  Identities=27%  Similarity=0.290  Sum_probs=87.5

Q ss_pred             CCccCcceEEEE--------ccCCEEEEEccCCceeEEEEeCC-CCeEEcCCCCC--HHHHhh-cchHHHHHHHHHHhhc
Q psy3430          20 DCVLGLEFSGRD--------TKGRRVMGLVAARSLATTVLADP-SFLWEVPAKWT--LEEAST-IPVVYATAYYSLIVRG   87 (121)
Q Consensus        20 ~~~~G~e~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~-~~~~~~p~~~~--~~~aa~-l~~~~~ta~~~l~~~~   87 (121)
                      +.++|+|++|+|        ++||+|+++   ++|++|+.+++ +.++++|++++  +.++++ +++++.|+|+++.+..
T Consensus        65 ~~~~g~e~~G~V~~~G~~~~~~Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~  141 (329)
T cd05288          65 GEPMRGGGVGEVVESRSPDFKVGDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIG  141 (329)
T ss_pred             CCcccCceEEEEEecCCCCCCCCCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhcc
Confidence            457899999998        579999886   47999999999 99999999985  545545 8999999999998888


Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.++++|+|+|++|++|++++|+|+.+|++|+
T Consensus       142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi  174 (329)
T cd05288         142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVV  174 (329)
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEE
Confidence            899999999999999999999999999999876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.72  E-value=1.3e-16  Score=115.31  Aligned_cols=101  Identities=29%  Similarity=0.444  Sum_probs=93.5

Q ss_pred             CCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          20 DCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        20 ~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      +.++|||++|+|          ++||+|++..   .+|+|++|+.++++.++++|+++++.+++.+.+++.|+++++.+.
T Consensus        57 ~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~  136 (325)
T cd08271          57 PHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKK  136 (325)
T ss_pred             CcccccceEEEEEEeCCCCCcCCCCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHh
Confidence            668999999998          5899999875   358999999999999999999999999999999999999999888


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++|++++|+|+++++|++++++++..|++++
T Consensus       137 ~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~  170 (325)
T cd08271         137 LRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVI  170 (325)
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEE
Confidence            9999999999999889999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.72  E-value=1.3e-16  Score=116.81  Aligned_cols=99  Identities=25%  Similarity=0.324  Sum_probs=85.5

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEE-------------------------c-------cCCceeEEEEeCCCC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGL-------------------------V-------AARSLATTVLADPSF   56 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~-------------------------~-------~~g~~~~~~~v~~~~   56 (121)
                      +|.++|+|++|+|          ++||+|+..                         .       .+|+|+||++++++.
T Consensus        53 ~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  132 (339)
T cd08232          53 EPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQ  132 (339)
T ss_pred             CCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHH
Confidence            4678999999998          579999862                         1       258999999999999


Q ss_pred             eEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          57 LWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        57 ~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++++|+++++++++. ..++.|+|+++.+...+ ++++|||.| +|++|++++|+|+.+|+ +++
T Consensus       133 ~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~  194 (339)
T cd08232         133 CVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTG-AGPIGALVVAAARRAGAAEIV  194 (339)
T ss_pred             eEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            999999999998865 67888999998666666 999999987 78999999999999998 664

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.71  E-value=3.2e-16  Score=113.74  Aligned_cols=100  Identities=39%  Similarity=0.612  Sum_probs=91.7

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      .|.++|+|++|+|          ++||+|+++..+|+|++|+.++.+.++++|+++++++++.+..+..++|+++.+..+
T Consensus        56 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~  135 (337)
T cd08275          56 PPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGN  135 (337)
T ss_pred             CCCCCcceeEEEEEEECCCCcCCCCCCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhC
Confidence            4678999999998          579999998767899999999999999999999999999999999999999988899


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHC-CCE
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHM-GCT  118 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~-G~~  118 (121)
                      ++++++|+|+|++|++|++++|+|+.+ +..
T Consensus       136 ~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~  166 (337)
T cd08275         136 LRPGQSVLVHSAAGGVGLAAGQLCKTVPNVT  166 (337)
T ss_pred             CCCCCEEEEEcCcchHHHHHHHHHHHccCcE
Confidence            999999999998899999999999998 443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.70  E-value=2.5e-16  Score=114.32  Aligned_cols=101  Identities=28%  Similarity=0.371  Sum_probs=91.9

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEcc---------------------CCceeEEEEeCCCCeEEcCCCCCHH
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVA---------------------ARSLATTVLADPSFLWEVPAKWTLE   67 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~---------------------~g~~~~~~~v~~~~~~~~p~~~~~~   67 (121)
                      .|.++|||++|+|          ++||+|+....                     +|+|++|+.++.+.++++|+++++.
T Consensus        57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~  136 (336)
T cd08276          57 DPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFE  136 (336)
T ss_pred             CCcccccceeEEEEEeCCCCcCCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHH
Confidence            4678999999998          47999998651                     5789999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        68 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++.+...+.+||+++.+..++++|++|+|+| +|++|+++++++++.|++|+
T Consensus       137 ~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g-~g~~g~~~~~~a~~~G~~v~  188 (336)
T cd08276         137 EAATLPCAGLTAWNALFGLGPLKPGDTVLVQG-TGGVSLFALQFAKAAGARVI  188 (336)
T ss_pred             HhhhhhHHHHHHHHHHHhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence            99999999999999998888999999999996 89999999999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.70  E-value=2.6e-16  Score=112.56  Aligned_cols=102  Identities=28%  Similarity=0.461  Sum_probs=93.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      .|.++|||++|+|          ++||+|+++.   .+|+|++|+.++.+.++++|+++++.+++.++....++++++.+
T Consensus        59 ~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~  138 (309)
T cd05289          59 LPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFE  138 (309)
T ss_pred             CCCccccceeEEEEeeCCCCCCCCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHh
Confidence            4778999999998          5799999875   24899999999999999999999999999999999999999977


Q ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+++++++++|+|++|.+|++++++++..|++|+
T Consensus       139 ~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~  173 (309)
T cd05289         139 LGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVI  173 (309)
T ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEE
Confidence            78899999999999889999999999999999876

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.70  E-value=2.6e-16  Score=114.31  Aligned_cols=99  Identities=26%  Similarity=0.239  Sum_probs=83.5

Q ss_pred             CCCccCcceEEEE-------ccCCEEEE---------------------------E-ccCCceeEEEEeCCCCeEEcCCC
Q psy3430          19 QDCVLGLEFSGRD-------TKGRRVMG---------------------------L-VAARSLATTVLADPSFLWEVPAK   63 (121)
Q Consensus        19 ~~~~~G~e~~G~V-------~~Gd~V~~---------------------------~-~~~g~~~~~~~v~~~~~~~~p~~   63 (121)
                      .|.++|+|++|+|       ++||+|..                           + ..+|+|+||++++++.++++|++
T Consensus        50 ~~~~~G~e~~G~Vv~~G~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~  129 (319)
T cd08242          50 FPGVPGHEFVGIVEEGPEAELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDL  129 (319)
T ss_pred             CCCccCceEEEEEEEeCCCCCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCC
Confidence            4678999999998       46888863                           1 12589999999999999999999


Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++++.+ ....+++..+ +..+++++++|+|+| +|++|++++|+|+.+|++|+
T Consensus       130 ~~~~~aa~~-~~~~~~~~~~-~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi  183 (319)
T cd08242         130 VPDEQAVFA-EPLAAALEIL-EQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVV  183 (319)
T ss_pred             CCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            999888754 4555677665 788999999999997 79999999999999999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.70  E-value=2.6e-16  Score=114.79  Aligned_cols=99  Identities=26%  Similarity=0.344  Sum_probs=87.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE-------------------------E--ccCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG-------------------------L--VAARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~-------------------------~--~~~g~~~~~~~v~~~~~~~~p   61 (121)
                      +|.++|+|++|+|          ++||+|+.                         +  ..+|+|+||++++++.++++|
T Consensus        52 ~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP  131 (334)
T cd08234          52 PPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIP  131 (334)
T ss_pred             CCcccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECc
Confidence            5678999999998          57999986                         1  135899999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      +++++.+++.+ ..+.++++++ +..+++++++|+|+| +|.+|++++|+|+.+|++ ++
T Consensus       132 ~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g-~g~vg~~~~~la~~~G~~~v~  188 (334)
T cd08234         132 DNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFG-AGPIGLLLAQLLKLNGASRVT  188 (334)
T ss_pred             CCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            99999988765 7888999998 888999999999997 699999999999999987 54

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.69  E-value=5.1e-16  Score=114.34  Aligned_cols=99  Identities=23%  Similarity=0.271  Sum_probs=86.0

Q ss_pred             CCCCccCcceEEEE-------c-----cCCEEEE---------------------------Ec--cCCceeEEEEeCCC-
Q psy3430          18 GQDCVLGLEFSGRD-------T-----KGRRVMG---------------------------LV--AARSLATTVLADPS-   55 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-------~-----~Gd~V~~---------------------------~~--~~g~~~~~~~v~~~-   55 (121)
                      ++|.++|+|++|+|       +     +||+|+.                           +.  ..|+|+||+.++++ 
T Consensus        61 ~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  140 (350)
T cd08256          61 KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEA  140 (350)
T ss_pred             CCCcccCcceeEEEEEeCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEccccc
Confidence            35678999999998       2     5999986                           31  35899999999987 


Q ss_pred             CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                      .++++|+++++++++.+ .++.|+|+++ +..+++++++|+|.| +|++|++++|+|+++|+++
T Consensus       141 ~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~  201 (350)
T cd08256         141 IVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKK  201 (350)
T ss_pred             ceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence            57899999999999888 8999999998 888999999999955 7999999999999999853

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.69  E-value=5.2e-16  Score=111.48  Aligned_cols=102  Identities=35%  Similarity=0.609  Sum_probs=93.1

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      .|.++|+|++|+|          ++||+|+++...|++++|+.++.+.++++|+++++.+++.+..+..++++++.+..+
T Consensus        57 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~  136 (323)
T cd08241          57 LPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRAR  136 (323)
T ss_pred             CCCcccceeEEEEEEeCCCCCCCCCCCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcC
Confidence            3568999999998          479999998645899999999999999999999999998999999999999977889


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++++|+|++|++|++++++++..|++|+
T Consensus       137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~  168 (323)
T cd08241         137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVI  168 (323)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEE
Confidence            99999999999889999999999999999875

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.68  E-value=5.3e-16  Score=115.13  Aligned_cols=97  Identities=34%  Similarity=0.451  Sum_probs=78.4

Q ss_pred             ccCcceEEEE---------ccCCEEEEEc--------------------------------cCCceeEEEEeCCCC-eEE
Q psy3430          22 VLGLEFSGRD---------TKGRRVMGLV--------------------------------AARSLATTVLADPSF-LWE   59 (121)
Q Consensus        22 ~~G~e~~G~V---------~~Gd~V~~~~--------------------------------~~g~~~~~~~v~~~~-~~~   59 (121)
                      ++|||++|+|         ++||||..-.                                .+|+|+||+.+|.+. +.+
T Consensus        58 i~GHE~~G~V~evG~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~  137 (350)
T COG1063          58 ILGHEFVGEVVEVGVVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAK  137 (350)
T ss_pred             ccCccceEEEEEeccccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeec
Confidence            9999999987         6789994211                                248999999999755 455


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +||++ ..+.+++..++.|++++.......+++++|+|.| +|++|++++|+++.+|+ +|+
T Consensus       138 ~pd~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Vi  197 (350)
T COG1063         138 LPDGI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASVVI  197 (350)
T ss_pred             CCCCC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEE
Confidence            58887 5566789999999988855666667777999999 89999999999999998 554

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.68  E-value=7.7e-16  Score=110.99  Aligned_cols=97  Identities=27%  Similarity=0.282  Sum_probs=83.2

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      +|.++|+|++|+|          ++||+|+.+.. |+|++|+.++++.++++|+++  ..++....++.|+++++. ..+
T Consensus        51 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~  126 (312)
T cd08269          51 EPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSG-GAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGW  126 (312)
T ss_pred             CCcccceeeEEEEEEECCCCcCCCCCCEEEEecC-CcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcC
Confidence            3678999999998          47999998754 789999999999999999998  233222378889999984 889


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      ++++++++|+| +|++|++++|+|+.+|++ |+
T Consensus       127 ~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~  158 (312)
T cd08269         127 IRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVI  158 (312)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            99999999996 799999999999999998 65

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.66  E-value=5.8e-16  Score=111.37  Aligned_cols=100  Identities=25%  Similarity=0.328  Sum_probs=84.8

Q ss_pred             CCCCccCcceEEE----E--------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCC--HHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGR----D--------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWT--LEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~----V--------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~--~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.-+|-...|-    |        ++||.|.+..   +|+||.+++.+.+.|++++.-  ......+..+..|||.+|
T Consensus        66 ~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gL  142 (340)
T COG2130          66 APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGL  142 (340)
T ss_pred             CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHH
Confidence            3566667665543    3        8999999874   799999999999999985432  123468889999999999


Q ss_pred             HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+.+++||+|+|.+|+|++|..+.|+||..|++|+
T Consensus       143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVV  179 (340)
T COG2130         143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVV  179 (340)
T ss_pred             HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEE
Confidence            9999999999999999999999999999999999987

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.66  E-value=1.3e-15  Score=111.77  Aligned_cols=98  Identities=27%  Similarity=0.302  Sum_probs=83.8

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~~~~~~p   61 (121)
                      +|.++|+|++|+|          ++||+|++                           +...|+|++|++++++.++++|
T Consensus        55 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  134 (340)
T TIGR00692        55 PPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNP  134 (340)
T ss_pred             CCcccccceEEEEEEECCCCCcCCCCCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECc
Confidence            4668999999998          57999987                           2245899999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      ++++++++ +++.++.++++++  ..++++|++++|.| +|++|.+++|+|+.+|++ |+
T Consensus       135 ~~~~~~~a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~  190 (340)
T TIGR00692       135 KSIPPEYA-TIQEPLGNAVHTV--LAGPISGKSVLVTG-AGPIGLMAIAVAKASGAYPVI  190 (340)
T ss_pred             CCCChHhh-hhcchHHHHHHHH--HccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            99998654 6778889999886  34578999999976 799999999999999996 64

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.65  E-value=1.7e-15  Score=112.21  Aligned_cols=97  Identities=25%  Similarity=0.335  Sum_probs=83.0

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEE-------------------------c---cCCceeEEEEeCCCCeEEc
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGL-------------------------V---AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~-------------------------~---~~g~~~~~~~v~~~~~~~~   60 (121)
                      +|.++|||++|+|          ++||+|+..                         .   .+|+|+||++++++.++++
T Consensus        73 ~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~  152 (364)
T PLN02702         73 EPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKL  152 (364)
T ss_pred             CCcccccceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEEC
Confidence            4678999999998          589999862                         1   1489999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      |+++++++++.. .++.++++++ ...+++++++|+|+| +|++|++++|+|+.+|++
T Consensus       153 P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~  207 (364)
T PLN02702        153 PENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMG-AGPIGLVTMLAARAFGAP  207 (364)
T ss_pred             CCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            999999988642 3455688887 788999999999997 799999999999999986

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.64  E-value=4.6e-15  Score=108.82  Aligned_cols=98  Identities=23%  Similarity=0.316  Sum_probs=81.3

Q ss_pred             CCCccCcceEEEE----------ccCCEEEE-Ec--------------------------cCCceeEEEEeCCC--CeEE
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMG-LV--------------------------AARSLATTVLADPS--FLWE   59 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~-~~--------------------------~~g~~~~~~~v~~~--~~~~   59 (121)
                      .|.++|||++|+|          ++||+|+. +.                          .+|+|+||++++.+  .+++
T Consensus        53 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~  132 (345)
T cd08287          53 APAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVK  132 (345)
T ss_pred             CCcccccceEEEEEEeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEE
Confidence            3679999999998          57999986 22                          13889999999974  8999


Q ss_pred             cCCCCCHHHH-----hhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          60 VPAKWTLEEA-----STIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        60 ~p~~~~~~~a-----a~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      +|++++++++     +++...+.||++++ +..++++|++|+|.| +|++|++++|+|+++|++
T Consensus       133 lP~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~  194 (345)
T cd08287         133 VPGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAE  194 (345)
T ss_pred             CCCCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            9999988222     12336788999998 578999999999976 899999999999999985

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05281 TDH Threonine dehydrogenase

Probab=99.62  E-value=8.6e-15  Score=107.47  Aligned_cols=98  Identities=23%  Similarity=0.333  Sum_probs=83.1

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP   61 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p   61 (121)
                      +|.++|+|++|+|          ++||+|+++.                           ..|+|++|++++++.++++|
T Consensus        57 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP  136 (341)
T cd05281          57 PPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKND  136 (341)
T ss_pred             CCcccccceEEEEEEECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECc
Confidence            4668999999998          5799998751                           24889999999999999999


Q ss_pred             CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++++++ ++++..++.++++++.  ...++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus       137 ~~~~~~-~a~~~~~~~~a~~~~~--~~~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~  192 (341)
T cd05281         137 KDIPPE-IASIQEPLGNAVHTVL--AGDVSGKSVLITG-CGPIGLMAIAVAKAAGASLVI  192 (341)
T ss_pred             CCCCHH-HhhhhhHHHHHHHHHH--hcCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            999985 4467778888988874  4568999999987 69999999999999998 565

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.61  E-value=1.2e-14  Score=106.69  Aligned_cols=99  Identities=25%  Similarity=0.354  Sum_probs=81.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||+|++..                           .+|+|+||+.++++.++++
T Consensus        56 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  135 (341)
T PRK05396         56 PVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKI  135 (341)
T ss_pred             CCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEEC
Confidence            35678999999998          6899998751                           3589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      |+++++++++.+ ..+.++++++..  ..++|++|+|+| +|++|++++|+|+++|+ +++
T Consensus       136 P~~l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~  192 (341)
T PRK05396        136 PDDIPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITG-AGPIGIMAAAVAKHVGARHVV  192 (341)
T ss_pred             cCCCCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            999999888644 566666665532  346899999987 79999999999999998 454

>KOG1196|consensus

Probab=99.54  E-value=1.7e-13  Score=98.60  Aligned_cols=92  Identities=24%  Similarity=0.277  Sum_probs=77.5

Q ss_pred             ceEEEE--------ccCCEEEEEccCCceeEEEEeCCCC--eEEcCC--CCCHHH-HhhcchHHHHHHHHHHhhcCCCCC
Q psy3430          26 EFSGRD--------TKGRRVMGLVAARSLATTVLADPSF--LWEVPA--KWTLEE-ASTIPVVYATAYYSLIVRGKMRPG   92 (121)
Q Consensus        26 e~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~~~--~~~~p~--~~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g   92 (121)
                      .++|+|        ++||.|+++.   +|.||.+++.+.  .++++.  +.++.. ..++..+.+|||..+++...+++|
T Consensus        78 ~GV~kVi~S~~~~~~~GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~g  154 (343)
T KOG1196|consen   78 FGVAKVIDSGHPNYKKGDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKG  154 (343)
T ss_pred             CceEEEEecCCCCCCcCceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCC
Confidence            456666        8999999986   699999998753  444443  444433 357889999999999999999999


Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++|+|.+|+|++|+.+.|+||.+||+|+
T Consensus       155 eTv~VSaAsGAvGql~GQ~Ak~~Gc~VV  182 (343)
T KOG1196|consen  155 ETVFVSAASGAVGQLVGQFAKLMGCYVV  182 (343)
T ss_pred             CEEEEeeccchhHHHHHHHHHhcCCEEE
Confidence            9999999999999999999999999987

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=98.64  E-value=5.3e-08  Score=60.85  Aligned_cols=44  Identities=25%  Similarity=0.144  Sum_probs=35.6

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      ..+|.++|||++|+|          ++||+|+...                           .+|+|+||+++++++++|
T Consensus        29 ~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~  108 (109)
T PF08240_consen   29 PKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVP  108 (109)
T ss_dssp             SSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEE
T ss_pred             CCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEE
Confidence            467899999999999          8999997632                           149999999999999987


Q ss_pred             c
Q psy3430          60 V   60 (121)
Q Consensus        60 ~   60 (121)
                      +
T Consensus       109 v  109 (109)
T PF08240_consen  109 V  109 (109)
T ss_dssp             E
T ss_pred             C
Confidence            5

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.86  E-value=0.0019  Score=50.67  Aligned_cols=32  Identities=38%  Similarity=0.391  Sum_probs=29.0

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ..++++|+|.| +|.+|+++++.|+.+|++|++
T Consensus       162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a  193 (509)
T PRK09424        162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVRA  193 (509)
T ss_pred             CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEE
Confidence            46899999999 899999999999999998763

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.75  E-value=0.0042  Score=47.57  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          77 ATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        77 ~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.+.++.+..++ .+|++|+|.| .|.+|+.+++.++.+|++|++
T Consensus       186 ~s~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV  230 (413)
T cd00401         186 ESLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIV  230 (413)
T ss_pred             hhhHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            3445566555444 6899999999 899999999999999998874

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.71  E-value=0.007  Score=46.51  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          76 YATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        76 ~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ....|.++.+..++. .|++|+|.| .|.+|+.+++.++.+|++|++
T Consensus       195 ~~s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV  240 (425)
T PRK05476        195 GESLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIV  240 (425)
T ss_pred             HhhhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEE
Confidence            345667775554554 899999999 899999999999999998864

>PRK08324 short chain dehydrogenase; Validated

Probab=96.46  E-value=0.0038  Score=50.50  Aligned_cols=64  Identities=25%  Similarity=0.366  Sum_probs=47.8

Q ss_pred             CceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh--hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          44 RSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV--RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        44 g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -++++|..+++..++.+ +..+.+++.            +.+  ..+..+|+++||+|++|++|+.+++.+...|++|+
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~------------l~~~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vv  450 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAK------------LQRMPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVV  450 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhh------------hhcCCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEE
Confidence            35678888888777777 556666663            111  12234689999999999999999999999999876

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.14  E-value=0.016  Score=44.30  Aligned_cols=44  Identities=18%  Similarity=0.252  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          77 ATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        77 ~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.+.++.+..+ ..+|++|+|.| .|.+|+.+++.++.+|++|++
T Consensus       179 ~s~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV  223 (406)
T TIGR00936       179 QSTIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVIV  223 (406)
T ss_pred             hhHHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEE
Confidence            344555545444 46899999999 899999999999999999874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.03  E-value=0.0067  Score=46.47  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=33.2

Q ss_pred             hhcCCCCCCEEE----EecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          85 VRGKMRPGESLL----VHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        85 ~~~~~~~g~~vl----i~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++.++++|+++|    |++|+|++|.+++|+++..|++|++
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~   67 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVA   67 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeee
Confidence            457788999998    9999999999999999999999863

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.77  E-value=0.019  Score=45.41  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ..++|++|+|.| +|+.|+.+++.++.+|++|++
T Consensus       133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~v  165 (564)
T PRK12771        133 APDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVTI  165 (564)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEE
Confidence            467899999999 899999999999999998763

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.49  E-value=0.094  Score=38.43  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+++++|.| .|.+|+.+++.++.+|++|++
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v  180 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKALGANVTV  180 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEE
Confidence            689999999 799999999999999998763

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.027  Score=39.73  Aligned_cols=32  Identities=41%  Similarity=0.608  Sum_probs=28.0

Q ss_pred             CCCCCEEEEecCCc-hHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAG-GLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g-~vG~~aiqla~~~G~~vi  120 (121)
                      +.++++++|+|++| ++|..+++.+...|++|+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~   46 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVV   46 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEE
Confidence            44678999999986 899999999999999876

>PLN02494 adenosylhomocysteinase

Probab=95.46  E-value=0.043  Score=42.81  Aligned_cols=42  Identities=14%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             HHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          79 AYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        79 a~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.++.+..++ -.|++++|.| .|.+|+.+++.++.+|++|++
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV  282 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVIV  282 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            35555455444 6799999999 899999999999999999874

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.029  Score=39.72  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=27.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++++|+||+|++|...++.....|++|+
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi   42 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVI   42 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEE
Confidence            467999999999999999998888999876

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.32  E-value=0.03  Score=44.68  Aligned_cols=39  Identities=15%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.-+..+.+.|++++|+||+|++|..+++.+...|++|+
T Consensus        70 ~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vv  108 (576)
T PLN03209         70 AIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVR  108 (576)
T ss_pred             ccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEE
Confidence            333456677899999999999999999999888899875

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.29  E-value=0.034  Score=39.14  Aligned_cols=30  Identities=27%  Similarity=0.436  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||++++|...++.....|++|+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~   43 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADII   43 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999875

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.18  E-value=0.038  Score=40.07  Aligned_cols=30  Identities=30%  Similarity=0.510  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||+|++|...++.+...|++|+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi   68 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVV   68 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            457899999999999999998888899876

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.17  E-value=0.17  Score=39.63  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=41.0

Q ss_pred             eEEcCCCCCHHHHh-hcchHHHHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          57 LWEVPAKWTLEEAS-TIPVVYATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        57 ~~~~p~~~~~~~aa-~l~~~~~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +..+|+..+...+- .+.+ ..+.+..+.+..+ .-.|++++|.| .|.+|+.+++.++.+|++|++
T Consensus       218 V~nv~d~~tk~~aD~~~G~-~~s~~d~~~R~~~~~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV  282 (476)
T PTZ00075        218 AINVNDSVTKSKFDNIYGC-RHSLIDGIFRATDVMIAGKTVVVCG-YGDVGKGCAQALRGFGARVVV  282 (476)
T ss_pred             EEEeCCcchHHHHHHHHHH-HHHHHHHHHHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            45556654433221 2222 2233344434433 45799999999 899999999999999999863

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.16  E-value=0.046  Score=37.27  Aligned_cols=30  Identities=30%  Similarity=0.477  Sum_probs=25.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.+++|.|++|++|+.+++.+...|++|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~   56 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV   56 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            568999999999999998888888888765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.04  Score=38.54  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.++||+||+|++|...++.+...|++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi   43 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVA   43 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            467999999999999999998888899876

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.95  E-value=0.051  Score=36.73  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=27.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -.|.+|.|.| .|.+|+..++.++.+|++|++
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~   64 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIG   64 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHHTT-EEEE
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeecCCceeEE
Confidence            3689999999 999999999999999999873

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06128 oxidoreductase; Provisional

Probab=94.93  E-value=0.044  Score=39.68  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+|+++++|..+++.....|++|+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~   83 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIA   83 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEE
Confidence            468999999999999999999888999875

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=94.91  E-value=0.051  Score=38.19  Aligned_cols=30  Identities=30%  Similarity=0.438  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.++||+|++|++|...++.....|++|+
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~   40 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVV   40 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence            468999999999999999999888999876

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.89  E-value=0.042  Score=40.48  Aligned_cols=30  Identities=20%  Similarity=0.215  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++++|+||++++|...++.....|++|+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vi   81 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLV   81 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEE
Confidence            589999999999999999988878899876

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.86  E-value=0.046  Score=43.04  Aligned_cols=31  Identities=39%  Similarity=0.433  Sum_probs=27.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .++++++|.| .|.+|++++++++.+|++|++
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~v  192 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVRA  192 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            3579999999 899999999999999998763

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.85  E-value=0.057  Score=40.00  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=33.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          78 TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        78 ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      |||--|+....+ +..+|||+||+|-+|..+++.+...|.+|+
T Consensus         2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~~V~   43 (348)
T PRK15181          2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQTVI   43 (348)
T ss_pred             chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCCEEE
Confidence            566666444444 347899999999999999999998898875

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.053  Score=39.67  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||++++|...++.+...|++|+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vi   42 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVI   42 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence            478999999999999999998888899886

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.81  E-value=0.048  Score=39.55  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||+|++|..+++.....|++|+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi   44 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVV   44 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEE
Confidence            568999999999999999998888899875

>PLN02253 xanthoxin dehydrogenase

Probab=94.81  E-value=0.055  Score=38.54  Aligned_cols=30  Identities=30%  Similarity=0.531  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+|++|++|...++.....|++|+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~   46 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVC   46 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence            467899999999999999988888899876

>PRK06196 oxidoreductase; Provisional

Probab=94.79  E-value=0.054  Score=39.52  Aligned_cols=30  Identities=27%  Similarity=0.467  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||+|++|..+++.....|++|+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv   54 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVI   54 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence            468999999999999999998888899876

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.75  E-value=0.057  Score=37.69  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...++.+++|+|++|++|...++.+...|++|+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi   40 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGATVI   40 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEE
Confidence            345788999999999999999988888898876

>PRK07985 oxidoreductase; Provisional

Probab=94.67  E-value=0.057  Score=39.10  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.+++|+||++++|...++.+...|++|+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi   77 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVA   77 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEE
Confidence            567999999999999999999888999876

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=94.63  E-value=0.01  Score=43.68  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=44.1

Q ss_pred             CCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCC---CCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          55 SFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKM---RPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        55 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~---~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +..+++|+.++.+.+... .+...+++++......   .++++|+|.| +|.+|..+++.++..|+ +|+
T Consensus       139 ~~a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~  206 (311)
T cd05213         139 QKAIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVAEIT  206 (311)
T ss_pred             HHHHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEE
Confidence            345677888777766443 3455666665322221   4789999999 79999999999988876 443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.42  E-value=0.073  Score=40.77  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++|+||+|++|...++.....|++|+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi  206 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVV  206 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            478999999999999999998888899876

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=94.40  E-value=0.099  Score=42.50  Aligned_cols=64  Identities=23%  Similarity=0.340  Sum_probs=42.5

Q ss_pred             eeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          46 LATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        46 ~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+|.-+++...+.+ +..+.+++=.-..          ...+.-.++++||+|++|++|..+++.....|++|+
T Consensus       379 ~~~~~~~~~~~~f~~-eyw~~e~~kl~~~----------~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vv  442 (676)
T TIGR02632       379 VSEYVSLPEQEAFDI-EYWPLEEAKLRRM----------PKEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVV  442 (676)
T ss_pred             ccceecCchhhccch-hhhhhhHHhhccC----------CCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEE
Confidence            456666777666666 4444455511000          001112478999999999999999998888899876

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.33  E-value=0.085  Score=40.43  Aligned_cols=30  Identities=30%  Similarity=0.441  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++|+|++|++|...++.+...|++|+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi  238 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVV  238 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999876

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=94.04  E-value=0.15  Score=36.29  Aligned_cols=78  Identities=21%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHH
Q psy3430          32 TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISI  111 (121)
Q Consensus        32 ~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiql  111 (121)
                      ++||+++...   +|.+|.. +...+.++++++++..+. .+.+.. ....+.+  .+.++++||-.| +|. |..++.+
T Consensus        68 ~~g~~~~i~p---~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~~--~~~~~~~VLDiG-cGs-G~l~i~~  137 (250)
T PRK00517         68 RIGDRLWIVP---SWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALEK--LVLPGKTVLDVG-CGS-GILAIAA  137 (250)
T ss_pred             EEcCCEEEEC---CCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHHh--hcCCCCEEEEeC-CcH-HHHHHHH
Confidence            6788876553   5777755 677889999988876542 222211 1222211  256889999998 665 8777765


Q ss_pred             HHHCCC-EEe
Q psy3430         112 ALHMGC-TVY  120 (121)
Q Consensus       112 a~~~G~-~vi  120 (121)
                      ++ .|+ +|+
T Consensus       138 ~~-~g~~~v~  146 (250)
T PRK00517        138 AK-LGAKKVL  146 (250)
T ss_pred             HH-cCCCeEE
Confidence            54 565 354

>KOG1201|consensus

Probab=94.04  E-value=0.093  Score=38.54  Aligned_cols=30  Identities=27%  Similarity=0.443  Sum_probs=25.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+.|||+|+++|+|+..++=...+|++++
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~v   66 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLV   66 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEE
Confidence            689999999999999988877777787653

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.01  E-value=0.1  Score=36.75  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|+|+||+|.+|..+++.+...|.+|+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~   45 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVK   45 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEE
Confidence            357899999999999999988888888875

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.99  E-value=0.11  Score=37.90  Aligned_cols=30  Identities=33%  Similarity=0.461  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+|+++++|...++.....|++|+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv   40 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVV   40 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            567899999999999999988888899876

>PLN02572 UDP-sulfoquinovose synthase

Probab=93.97  E-value=0.093  Score=40.48  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=27.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++.+|||+||+|.+|..+++.+...|.+|+
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~   75 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVA   75 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence            3568899999999999999999988898776

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.79  E-value=0.12  Score=37.31  Aligned_cols=30  Identities=23%  Similarity=0.480  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.++||+||+|++|...++.....|++|+
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~   74 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIA   74 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999988888899875

>PLN02686 cinnamoyl-CoA reductase

Probab=93.78  E-value=0.12  Score=38.80  Aligned_cols=32  Identities=25%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...+++|||+||+|.+|..+++.+...|.+|+
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~   81 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVR   81 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEE
Confidence            35678999999999999999999988899875

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.71  E-value=0.12  Score=40.02  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.+|||+||+|-+|..+++.+...|.+|+
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~  147 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVI  147 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEE
Confidence            568999999999999999999998898876

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.62  E-value=0.12  Score=34.48  Aligned_cols=27  Identities=37%  Similarity=0.540  Sum_probs=23.3

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|+|.| +|.+|+.|+++++.+|++|+
T Consensus        21 ~~vvv~G-~G~vg~gA~~~~~~lGa~v~   47 (168)
T PF01262_consen   21 AKVVVTG-AGRVGQGAAEIAKGLGAEVV   47 (168)
T ss_dssp             -EEEEES-TSHHHHHHHHHHHHTT-EEE
T ss_pred             eEEEEEC-CCHHHHHHHHHHhHCCCEEE
Confidence            6789998 89999999999999999875

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.60  E-value=0.32  Score=32.73  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=30.0

Q ss_pred             HHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          78 TAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        78 ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +.+.++.+..+ .-.|++++|.| -|-+|.-.++.++.+|++|++
T Consensus         8 S~~d~i~r~t~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V   51 (162)
T PF00670_consen    8 SLVDGIMRATNLMLAGKRVVVIG-YGKVGKGIARALRGLGARVTV   51 (162)
T ss_dssp             HHHHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEE
T ss_pred             hHHHHHHhcCceeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEE
Confidence            34445544444 45899999999 999999999999999999874

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61

Probab=93.59  E-value=0.21  Score=28.91  Aligned_cols=30  Identities=33%  Similarity=0.405  Sum_probs=26.4

Q ss_pred             CCCEEEEecCC-chHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGA-GGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~-g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+.+||+|++ .+...++.+.|+..|..++
T Consensus        31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~   61 (71)
T PF10686_consen   31 HPDMVLVHGGAPKGADRIAARWARERGVPVI   61 (71)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCeeE
Confidence            36788999998 8999999999999998654

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.

>PRK06720 hypothetical protein; Provisional

Probab=93.45  E-value=0.17  Score=33.97  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=26.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++..++|+||++++|...+......|++|+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~   44 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVI   44 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEE
Confidence            578999999999999999988888898875

>KOG1205|consensus

Probab=93.40  E-value=0.15  Score=37.29  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=24.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                      .++.|+|+||++|+|..++.-.-..|+++
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l   39 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKL   39 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCce
Confidence            57889999999999998887777778853

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=93.13  E-value=0.31  Score=37.35  Aligned_cols=54  Identities=26%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ..++|....+...+- .++ +..+. -.|.+|.|.| .|.+|+.+++.+...|++|++
T Consensus       181 ~r~~aTg~Gv~~~~~-~a~-~~~g~~l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvva  235 (411)
T COG0334         181 GRSEATGYGVFYAIR-EAL-KALGDDLEGARVAVQG-FGNVGQYAAEKLHELGAKVVA  235 (411)
T ss_pred             CCCcccceehHHHHH-HHH-HHcCCCcCCCEEEEEC-ccHHHHHHHHHHHHcCCEEEE
Confidence            344566666655555 455 33333 4899999999 999999999999888999874

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.12  E-value=0.2  Score=37.95  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=29.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+-..+.+|+|+||+|.+|..+++.+...|.+|+
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~   88 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVV   88 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            4455678999999999999999998888888775

>PRK06484 short chain dehydrogenase; Validated

Probab=93.11  E-value=0.18  Score=39.27  Aligned_cols=30  Identities=20%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~  297 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLL  297 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            578899999999999999999888999886

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=92.67  E-value=0.22  Score=38.44  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++..+|||+||+|-+|..+++.+...|.+|+
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~  148 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVI  148 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCEEE
Confidence            3567899999999999999999988898876

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.57  E-value=0.7  Score=31.16  Aligned_cols=49  Identities=22%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             hcchHHHHHHHHHHhhcCCCCCCEEEEecCCch-HHHHHHHHHHHCCCEEe
Q psy3430          71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGG-LGQAAISIALHMGCTVY  120 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~-vG~~aiqla~~~G~~vi  120 (121)
                      ..|+....+...+.+...--.+.+++|.|+ |. +|..+++.++..|++|.
T Consensus        23 ~~p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~   72 (168)
T cd01080          23 FIPCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVT   72 (168)
T ss_pred             ccCChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEE
Confidence            344444444444433433457899999995 65 69999999999998764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.56  E-value=0.21  Score=37.78  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+|+|.| +|.+|+.+++.++.+|++|+
T Consensus       167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~  194 (370)
T TIGR00518       167 PGDVTIIG-GGVVGTNAAKMANGLGATVT  194 (370)
T ss_pred             CceEEEEc-CCHHHHHHHHHHHHCCCeEE
Confidence            34588998 79999999999999999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.42  E-value=0.46  Score=34.72  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++++|.| .|.+|..+++.++.+|++|+
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~  178 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSALGARVF  178 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHHCCCEEE
Confidence            578999999 79999999999999999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=92.38  E-value=0.56  Score=27.60  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=18.2

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHH-HHCCCEE
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIA-LHMGCTV  119 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla-~~~G~~v  119 (121)
                      ..++-.++|||.|++++.|++.--.+ -..|++.
T Consensus        34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~T   67 (78)
T PF12242_consen   34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGADT   67 (78)
T ss_dssp             ---TS-SEEEEES-SSHHHHHHHHHHHHCC--EE
T ss_pred             CCCCCCceEEEEecCCcccHHHHHHHHhcCCCCE
Confidence            44533489999999999999754333 2445554

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.16  E-value=0.29  Score=36.75  Aligned_cols=31  Identities=6%  Similarity=0.007  Sum_probs=27.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+.+|||+|++|-+|..++..+...|.+|+
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~   49 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYII   49 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEE
Confidence            3668999999999999999999998898775

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.06  E-value=0.72  Score=33.84  Aligned_cols=48  Identities=17%  Similarity=0.195  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..+ +..++ -.|.+++|.|++.-+|.-+.+++...|++|+
T Consensus       138 ~PcTp~ai~~ll-~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt  186 (286)
T PRK14175        138 VPCTPLGIMEIL-KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT  186 (286)
T ss_pred             CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence            455555555555 33333 4789999999777799999999999999886

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=91.99  E-value=0.68  Score=36.09  Aligned_cols=30  Identities=27%  Similarity=0.510  Sum_probs=28.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|.+|.|.| .|.+|..+++.+..+|++|+
T Consensus       235 l~Gk~VaVqG-~GnVg~~aa~~L~e~GakVV  264 (454)
T PTZ00079        235 LEGKTVVVSG-SGNVAQYAVEKLLQLGAKVL  264 (454)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            4789999999 89999999999999999987

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=91.87  E-value=0.83  Score=32.94  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=27.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|.+|.|.| .|.+|+.+++++..+|++|+
T Consensus        36 l~g~~vaIqG-fGnVG~~~a~~L~e~Gakvv   65 (254)
T cd05313          36 LKGKRVAISG-SGNVAQYAAEKLLELGAKVV   65 (254)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            3688999999 89999999999999999987

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=91.82  E-value=0.24  Score=38.02  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhhcC---CCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          75 VYATAYYSLIVRGK---MRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        75 ~~~ta~~~l~~~~~---~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +...+++++.....   -.++++|+|.| +|.+|..+++.++..|+ +|+
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~  210 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGVRKIT  210 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCCCeEE
Confidence            44455555532221   25789999999 79999999999999997 554

>PRK14031 glutamate dehydrogenase; Provisional

Probab=91.68  E-value=0.77  Score=35.74  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -+|.+|+|.| .|.+|..+++.+...|++|++
T Consensus       226 l~g~rVaVQG-fGNVG~~aA~~L~e~GAkVVa  256 (444)
T PRK14031        226 LKGKVCLVSG-SGNVAQYTAEKVLELGGKVVT  256 (444)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            3689999999 899999999999999999874

>PRK14030 glutamate dehydrogenase; Provisional

Probab=91.62  E-value=0.78  Score=35.71  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=28.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -+|.+|.|.| .|.+|+.+++.+..+|++|++
T Consensus       226 l~g~~vaIQG-fGnVG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        226 IKGKTVAISG-FGNVAWGAATKATELGAKVVT  256 (445)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            3689999999 999999999999999999874

>PRK07201 short chain dehydrogenase; Provisional

Probab=91.50  E-value=0.33  Score=38.87  Aligned_cols=29  Identities=28%  Similarity=0.580  Sum_probs=26.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+++|+||+|++|...++.....|++|+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~  399 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVF  399 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            67899999999999999988888899876

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.22  E-value=1.2  Score=30.71  Aligned_cols=31  Identities=19%  Similarity=0.307  Sum_probs=27.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -.|.+++|.| .|.+|..+++.+...|++|++
T Consensus        26 l~gk~v~I~G-~G~vG~~~A~~L~~~G~~Vvv   56 (200)
T cd01075          26 LEGKTVAVQG-LGKVGYKLAEHLLEEGAKLIV   56 (200)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            3678999999 789999999999999998863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=91.08  E-value=0.4  Score=35.38  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.++.|.| .|.+|+..+++++.+|++|++
T Consensus       144 ~gktvGIiG-~G~IG~~vA~~~~~fgm~V~~  173 (311)
T PRK08410        144 KGKKWGIIG-LGTIGKRVAKIAQAFGAKVVY  173 (311)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhcCCEEEE
Confidence            578999999 999999999999999999873

>PRK05855 short chain dehydrogenase; Validated

Probab=91.00  E-value=0.41  Score=37.38  Aligned_cols=30  Identities=20%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++-+...|++|+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~  343 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVV  343 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEE
Confidence            457899999999999999988888899876

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.94  E-value=1.2  Score=31.21  Aligned_cols=30  Identities=20%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|+|.| .|.+|+.+++++..+|++++
T Consensus        21 l~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV   50 (217)
T cd05211          21 LEGLTVAVQG-LGNVGWGLAKKLAEEGGKVL   50 (217)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence            3688999999 99999999999999998765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06932 glycerate dehydrogenase; Provisional

Probab=90.90  E-value=0.39  Score=35.53  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++.|.| .|.+|+..+++++.+|++|+
T Consensus       146 ~gktvgIiG-~G~IG~~va~~l~~fg~~V~  174 (314)
T PRK06932        146 RGSTLGVFG-KGCLGTEVGRLAQALGMKVL  174 (314)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhcCCCEEE
Confidence            478999999 99999999999999999986

>PLN02928 oxidoreductase family protein

Probab=90.83  E-value=0.43  Score=35.78  Aligned_cols=30  Identities=13%  Similarity=0.283  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.++.|.| .|.+|+.+++.++.+|++|++
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~  187 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLA  187 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEE
Confidence            578999999 899999999999999998863

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=90.62  E-value=0.38  Score=34.95  Aligned_cols=39  Identities=31%  Similarity=0.433  Sum_probs=27.0

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +..+.+..++++|++||=.| +| -|..++.+++..|++|+
T Consensus        51 ~~~~~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~   89 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIG-CG-WGGLAIYAAERYGCHVT   89 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEE
T ss_pred             HHHHHHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCcEEE
Confidence            33455888999999999998 55 78889999999999875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK06487 glycerate dehydrogenase; Provisional

Probab=90.41  E-value=0.48  Score=35.07  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++.|.| .|.+|+..++.++.+|++|+
T Consensus       147 ~gktvgIiG-~G~IG~~vA~~l~~fgm~V~  175 (317)
T PRK06487        147 EGKTLGLLG-HGELGGAVARLAEAFGMRVL  175 (317)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEE
Confidence            467999999 99999999999999999986

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.38  E-value=2.1  Score=28.03  Aligned_cols=48  Identities=23%  Similarity=0.275  Sum_probs=35.7

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++........+ +..++ -.|.+|+|+|.+..+|.-+..+++..|++|+
T Consensus         8 ~p~t~~a~~~ll-~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~   56 (140)
T cd05212           8 VSPVAKAVKELL-NKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY   56 (140)
T ss_pred             cccHHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            444444444445 33344 4799999999999999999999999999875

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=90.31  E-value=0.68  Score=35.48  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=25.2

Q ss_pred             cCC-CCCCEEEEecCCchHHHH--HHHHHHHCCCEEe
Q psy3430          87 GKM-RPGESLLVHAGAGGLGQA--AISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~-~~g~~vli~ga~g~vG~~--aiqla~~~G~~vi  120 (121)
                      ..+ ..++++||+|+++++|++  ..+.+ ..|++++
T Consensus        35 ~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi   70 (398)
T PRK13656         35 GPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTL   70 (398)
T ss_pred             CCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEE
Confidence            344 446889999999999999  45555 7899754

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.25  E-value=1.4  Score=32.25  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=26.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+++|.|+++-+|.....++...|++|+
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVt  187 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVT  187 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEE
Confidence            5789999999555599999999999999875

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=90.24  E-value=0.52  Score=36.09  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=27.0

Q ss_pred             CCCEEEEecC----------------CchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAG----------------AGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga----------------~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++||+|+                +|.+|.+.++.+...|++|+
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~  232 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVT  232 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEE
Confidence            6899999998                56699999999999999986

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=90.24  E-value=1.6  Score=29.23  Aligned_cols=50  Identities=20%  Similarity=0.191  Sum_probs=33.2

Q ss_pred             hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+|++....+..|....---.|++++|.|.+.-+|.-+..+.+..|++|+
T Consensus        15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt   64 (160)
T PF02882_consen   15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT   64 (160)
T ss_dssp             S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE
T ss_pred             CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE
Confidence            44555555555563332235799999999888999999999999999875

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN02477 glutamate dehydrogenase

Probab=90.05  E-value=1.3  Score=34.11  Aligned_cols=30  Identities=17%  Similarity=0.375  Sum_probs=27.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|.+|.|.| .|.+|+.+++++...|++|+
T Consensus       204 l~g~~VaIqG-fGnVG~~~A~~L~e~GakVV  233 (410)
T PLN02477        204 IAGQTFVIQG-FGNVGSWAAQLIHEKGGKIV  233 (410)
T ss_pred             ccCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence            3688999999 89999999999999999987

>KOG1200|consensus

Probab=89.89  E-value=0.58  Score=32.85  Aligned_cols=29  Identities=24%  Similarity=0.412  Sum_probs=25.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ...+|+|+++++|++..|.....|++|.+
T Consensus        15 k~~~vtGg~sGIGrAia~~la~~Garv~v   43 (256)
T KOG1200|consen   15 KVAAVTGGSSGIGRAIAQLLAKKGARVAV   43 (256)
T ss_pred             ceeEEecCCchHHHHHHHHHHhcCcEEEE
Confidence            45689999999999999999999999864

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=89.87  E-value=0.66  Score=35.29  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=36.5

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +..+..+.+..+.+..+++++++||-.| + |.|..+..+++..|++|+
T Consensus       148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~  194 (383)
T PRK11705        148 LEEAQEAKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEHYGVSVV  194 (383)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHHCCCEEE
Confidence            3444455666666778899999999998 4 578888999998888875

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=89.84  E-value=0.98  Score=32.92  Aligned_cols=29  Identities=24%  Similarity=0.281  Sum_probs=24.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      .+++++|.|| |++|++++..+...|++ |+
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~  154 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDGAKEIT  154 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEE
Confidence            5788999995 89999998888888985 54

>PLN02427 UDP-apiose/xylose synthase

Probab=89.78  E-value=0.59  Score=35.06  Aligned_cols=32  Identities=9%  Similarity=0.000  Sum_probs=25.8

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHM-GCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi  120 (121)
                      .-+..+|||+||+|-+|..+++.+... |.+|+
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~   43 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVL   43 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEE
Confidence            334568999999999999999988777 46765

>KOG1208|consensus

Probab=89.68  E-value=0.69  Score=34.32  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+|+++|+|...++-....|++|+
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv   63 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGAHVV   63 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCCEEE
Confidence            567899999999999999999999999886

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=89.63  E-value=0.72  Score=32.99  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.+-.+++|.| +|.+++..+++|+.+|.+|++
T Consensus        96 ~~~p~~~L~IfG-aG~va~~la~la~~lGf~V~v  128 (246)
T TIGR02964        96 EAPPAPHVVLFG-AGHVGRALVRALAPLPCRVTW  128 (246)
T ss_pred             ccCCCCEEEEEC-CcHHHHHHHHHHhcCCCEEEE
Confidence            456778999999 899999999999999998863

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=89.54  E-value=1.1  Score=28.94  Aligned_cols=37  Identities=27%  Similarity=0.309  Sum_probs=25.3

Q ss_pred             hhcCCCCCCEEEEecCCch--HHHHHHHHHHHCCCEEeC
Q psy3430          85 VRGKMRPGESLLVHAGAGG--LGQAAISIALHMGCTVYT  121 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~--vG~~aiqla~~~G~~vi~  121 (121)
                      ...++++||.+++...+|.  .=.-+++.||.+|++||+
T Consensus        97 ~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIa  135 (138)
T PF13580_consen   97 ALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIA  135 (138)
T ss_dssp             HHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEE
T ss_pred             HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Confidence            4456899999988876664  457788999999999874

...

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=89.50  E-value=0.55  Score=33.59  Aligned_cols=33  Identities=30%  Similarity=0.517  Sum_probs=25.9

Q ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHCCC--EEe
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGC--TVY  120 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~--~vi  120 (121)
                      ...+++|++||..| +|. |..++++++..|.  +|+
T Consensus        72 ~~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~  106 (272)
T PRK11873         72 LAELKPGETVLDLG-SGG-GFDCFLAARRVGPTGKVI  106 (272)
T ss_pred             hccCCCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEE
Confidence            45788999999998 666 8888888887764  454

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.25  E-value=0.39  Score=29.45  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|||.| .|.++..-++.+...|++|+
T Consensus         6 ~~~~vlVvG-gG~va~~k~~~Ll~~gA~v~   34 (103)
T PF13241_consen    6 KGKRVLVVG-GGPVAARKARLLLEAGAKVT   34 (103)
T ss_dssp             TT-EEEEEE-ESHHHHHHHHHHCCCTBEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            578999999 79999999999999999875

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=89.14  E-value=1.6  Score=33.52  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ...++++++|.| +|.+|..+++.++..|+ +|+
T Consensus       176 ~~l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~  208 (417)
T TIGR01035       176 GSLKGKKALLIG-AGEMGELVAKHLLRKGVGKIL  208 (417)
T ss_pred             CCccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEE
Confidence            345789999999 79999999999999994 554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=89.08  E-value=1.7  Score=33.82  Aligned_cols=31  Identities=29%  Similarity=0.418  Sum_probs=28.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -+|.+|.|.| .|.+|+.+++++...|++|++
T Consensus       230 l~g~rVaIqG-fGnVG~~~A~~L~~~GakVVa  260 (445)
T PRK09414        230 FEGKRVVVSG-SGNVAIYAIEKAQQLGAKVVT  260 (445)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            4689999999 899999999999999999874

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=88.89  E-value=0.67  Score=37.56  Aligned_cols=31  Identities=19%  Similarity=0.244  Sum_probs=26.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHM-GCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi  120 (121)
                      +++.+|||+||+|-+|..+++.+... |.+|+
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~  344 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVY  344 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEE
Confidence            46788999999999999999888765 67775

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=88.88  E-value=2  Score=31.09  Aligned_cols=30  Identities=30%  Similarity=0.509  Sum_probs=25.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ..+.+++|.| +|++|++++..++..| .+|+
T Consensus       121 ~~~k~vlVlG-aGg~a~ai~~aL~~~g~~~V~  151 (278)
T PRK00258        121 LKGKRILILG-AGGAARAVILPLLDLGVAEIT  151 (278)
T ss_pred             CCCCEEEEEc-CcHHHHHHHHHHHHcCCCEEE
Confidence            3567899999 6999999999999999 4665

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=88.78  E-value=2  Score=30.91  Aligned_cols=32  Identities=31%  Similarity=0.568  Sum_probs=25.7

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...++.+++|.| +|++|.+++..+...|++|+
T Consensus       113 ~~~~~k~vliiG-aGg~g~aia~~L~~~g~~v~  144 (270)
T TIGR00507       113 PLRPNQRVLIIG-AGGAARAVALPLLKADCNVI  144 (270)
T ss_pred             CCccCCEEEEEc-CcHHHHHHHHHHHHCCCEEE
Confidence            345578999999 58999999988888888764

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=88.71  E-value=1.5  Score=31.90  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=24.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+.+++|.| +|+.|.+++..+...|+ +++
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~  155 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALLTLGVERLT  155 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEE
Confidence            567899999 89999999999999998 553

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.71  E-value=2.2  Score=31.35  Aligned_cols=48  Identities=15%  Similarity=0.265  Sum_probs=36.5

Q ss_pred             cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++. .|.+|+|.|.+.-+|.-+..++...||+|+
T Consensus       137 ~PcTp~avi~lL-~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt  185 (285)
T PRK14191        137 VPATPMGVMRLL-KHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS  185 (285)
T ss_pred             CCCcHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE
Confidence            455555555555 444553 699999999877999999999999999886

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=88.31  E-value=2.5  Score=31.00  Aligned_cols=40  Identities=30%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          79 AYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        79 a~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++..+.+..++++|++||=.| +|- |.+++-+|+..|++|+
T Consensus        60 k~~~~~~kl~L~~G~~lLDiG-CGW-G~l~~~aA~~y~v~V~   99 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIG-CGW-GGLAIYAAEEYGVTVV   99 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeC-CCh-hHHHHHHHHHcCCEEE
Confidence            455666889999999999998 654 8889999999999886

>PRK06436 glycerate dehydrogenase; Provisional

Probab=88.18  E-value=0.96  Score=33.34  Aligned_cols=29  Identities=28%  Similarity=0.478  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|+..+++++.+|++|+
T Consensus       121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~  149 (303)
T PRK06436        121 YNKSLGILG-YGGIGRRVALLAKAFGMNIY  149 (303)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            578999999 99999999999999999886

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=87.94  E-value=0.96  Score=33.71  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      |.++-|.| .|.+|+.+++.++.+|.+|++
T Consensus       142 gkTvGIiG-~G~IG~~va~~l~afgm~v~~  170 (324)
T COG0111         142 GKTVGIIG-LGRIGRAVAKRLKAFGMKVIG  170 (324)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCeEEE
Confidence            78999999 999999999999999999873

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.87  E-value=2.1  Score=31.46  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=35.9

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++ -.|.+++|.|.+.-+|.-+..++...|++|+
T Consensus       138 ~PcTp~aii~lL-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt  186 (285)
T PRK14189        138 RPCTPYGVMKML-ESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT  186 (285)
T ss_pred             cCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence            355544444444 44444 3799999999888889999999999999886

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=87.65  E-value=0.97  Score=36.63  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=26.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+++|+|.| +|+.|+.++..++..|.+|+
T Consensus       325 ~~~~~VaIIG-aGpAGLsaA~~L~~~G~~V~  354 (654)
T PRK12769        325 KSDKRVAIIG-AGPAGLACADVLARNGVAVT  354 (654)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence            3588999999 89999999999999999875

>KOG1252|consensus

Probab=87.50  E-value=1.9  Score=32.45  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=33.1

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +.+.+.||.++||-.-+|.+|....-+++.+|.++|+
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~  132 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCII  132 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEE
Confidence            4578999999999998899999999999999998763

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=87.48  E-value=3.4  Score=29.17  Aligned_cols=29  Identities=21%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|.|.| .|.+|+.+++++...|++|+
T Consensus        30 ~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv   58 (227)
T cd01076          30 AGARVAIQG-FGNVGSHAARFLHEAGAKVV   58 (227)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            578999999 89999999999999999886

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=87.47  E-value=1.1  Score=34.89  Aligned_cols=29  Identities=31%  Similarity=0.394  Sum_probs=26.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++|+|.| +|..|+.+++.++..|.+|+
T Consensus       140 ~~~~V~IIG-~GpaGl~aA~~l~~~G~~V~  168 (467)
T TIGR01318       140 TGKRVAVIG-AGPAGLACADILARAGVQVV  168 (467)
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            578999999 89999999999999998775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13243 glyoxylate reductase; Reviewed

Probab=87.25  E-value=1.1  Score=33.30  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|+..++.++.+|++|+
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~  177 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGFGMRIL  177 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            578999999 89999999999999999886

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=86.95  E-value=2.2  Score=30.99  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=25.6

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +...+++++|.| +||.+++++..++..|+ +++
T Consensus       118 ~~~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~  150 (272)
T PRK12550        118 QVPPDLVVALRG-SGGMAKAVAAALRDAGFTDGT  150 (272)
T ss_pred             CCCCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEE
Confidence            344567899999 79999999998888887 454

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=86.78  E-value=1.1  Score=32.02  Aligned_cols=30  Identities=20%  Similarity=0.396  Sum_probs=27.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.++.|.| .|.+|..+++.+..+|++++
T Consensus        30 l~g~~v~IqG-fG~VG~~~a~~l~~~Ga~vv   59 (244)
T PF00208_consen   30 LEGKRVAIQG-FGNVGSHAARFLAELGAKVV   59 (244)
T ss_dssp             STTCEEEEEE-SSHHHHHHHHHHHHTTEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence            3689999999 79999999999999999876

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=86.68  E-value=2.4  Score=31.09  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=26.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ..+|++++|.| +||.+++++.-++..|+ ++.
T Consensus       123 ~~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~  154 (283)
T COG0169         123 DVTGKRVLILG-AGGAARAVAFALAEAGAKRIT  154 (283)
T ss_pred             ccCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEE
Confidence            34689999999 89999999999999996 554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.50  E-value=1.3  Score=33.96  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++.|.| .|.+|+..++.++.+|.+|+
T Consensus       150 ~gktvGIiG-~G~IG~~vA~~~~~fGm~V~  178 (409)
T PRK11790        150 RGKTLGIVG-YGHIGTQLSVLAESLGMRVY  178 (409)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            578999999 99999999999999999986

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=86.23  E-value=1.4  Score=33.56  Aligned_cols=30  Identities=10%  Similarity=0.150  Sum_probs=27.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|-|.| .|.+|....+.++.+|.+|+
T Consensus       114 L~gktvGIIG-~G~IG~~vA~~l~a~G~~V~  143 (378)
T PRK15438        114 LHDRTVGIVG-VGNVGRRLQARLEALGIKTL  143 (378)
T ss_pred             cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            3689999999 89999999999999999986

>KOG1210|consensus

Probab=85.59  E-value=3.2  Score=31.02  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+.++...++|.|++.++|++...-++..|++|.
T Consensus        28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga~Vt   61 (331)
T KOG1210|consen   28 VKPKPRRHILITGGSSGLGLALALECKREGADVT   61 (331)
T ss_pred             cccCccceEEEecCcchhhHHHHHHHHHccCceE
Confidence            3445568999999999999999999999999764

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=85.54  E-value=2.9  Score=30.53  Aligned_cols=29  Identities=24%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGC-TV  119 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~-~v  119 (121)
                      ..+.+++|.| +||.+++++.-+...|+ ++
T Consensus       125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~~i  154 (283)
T PRK14027        125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKL  154 (283)
T ss_pred             cCCCeEEEEC-CcHHHHHHHHHHHHCCCCEE
Confidence            3478899999 79999999988878887 44

>KOG2862|consensus

Probab=85.52  E-value=1.3  Score=33.18  Aligned_cols=30  Identities=37%  Similarity=0.616  Sum_probs=27.4

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                      +.|||++|+.- .|--|+-++.+++.+|++|
T Consensus        89 lePgd~vLv~~-~G~wg~ra~D~~~r~ga~V  118 (385)
T KOG2862|consen   89 LEPGDNVLVVS-TGTWGQRAADCARRYGAEV  118 (385)
T ss_pred             cCCCCeEEEEE-echHHHHHHHHHHhhCcee
Confidence            56999999976 8999999999999999976

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=85.50  E-value=1.7  Score=32.21  Aligned_cols=29  Identities=17%  Similarity=0.150  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|+..++.++.+|++|+
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~  163 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLR  163 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            578999999 99999999999999999875

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.27  E-value=3.4  Score=30.33  Aligned_cols=48  Identities=23%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++....+..| +..++. .|.+++|.|.+.-+|.-+..+++..||+|+
T Consensus       139 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt  187 (285)
T PRK10792        139 RPCTPRGIMTLL-ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT  187 (285)
T ss_pred             CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE
Confidence            455555555555 444443 699999999777799999999999999886

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=85.18  E-value=1.5  Score=35.52  Aligned_cols=29  Identities=28%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++|+|.| +|..|+.+++.++..|.+|+
T Consensus       309 ~~kkVaIIG-~GpaGl~aA~~L~~~G~~Vt  337 (639)
T PRK12809        309 RSEKVAVIG-AGPAGLGCADILARAGVQVD  337 (639)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCcEE
Confidence            489999999 89999999999999998775

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.02  E-value=4.2  Score=30.02  Aligned_cols=48  Identities=19%  Similarity=0.162  Sum_probs=36.4

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++ -.|.+|+|.|.++-+|.-.+.++...|++|+
T Consensus       138 ~PcTp~ai~~ll-~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt  186 (296)
T PRK14188        138 VPCTPLGCMMLL-RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT  186 (296)
T ss_pred             cCCCHHHHHHHH-HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE
Confidence            455555555555 43344 4799999999999999999999998999875

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.95  E-value=3.9  Score=30.07  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++....+..| +..++. .|.+++|.|.+.-+|.-+..++...||+|+
T Consensus       144 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt  192 (287)
T PRK14176        144 VPCTPHGVIRAL-EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS  192 (287)
T ss_pred             CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE
Confidence            455555555555 444554 799999999877899999999999999876

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=84.68  E-value=2.5  Score=24.33  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          94 SLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        94 ~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++|.| +|.+|.-.++.++.+|.+|.
T Consensus         1 ~vvViG-gG~ig~E~A~~l~~~g~~vt   26 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALAELGKEVT   26 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHTTSEEE
T ss_pred             CEEEEC-cCHHHHHHHHHHHHhCcEEE
Confidence            578888 89999999988888888764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=84.65  E-value=3.9  Score=28.41  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             hcchHHHHHHHHHHhhcCC----------CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          71 TIPVVYATAYYSLIVRGKM----------RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~----------~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+||.....+..| +..++          -.|++++|.|.+.-+|.=+..++...||+|+
T Consensus        32 ~~PCTp~avi~lL-~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt   90 (197)
T cd01079          32 ILPCTPLAIVKIL-EFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY   90 (197)
T ss_pred             ccCCCHHHHHHHH-HHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence            3566655555555 33333          4799999999999999999999999999885

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=84.60  E-value=1.7  Score=33.29  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=26.6

Q ss_pred             CCCCEEEEecC---------------Cch-HHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAG---------------AGG-LGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga---------------~g~-vG~~aiqla~~~G~~vi  120 (121)
                      -+|.++||+|+               ++| +|.+.++-+..+|++|+
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~  229 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVT  229 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEE
Confidence            47899999998               344 99999999999999876

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=84.49  E-value=3.9  Score=31.23  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -.|.+|.|.| .|.+|...++.++.+|.+|++
T Consensus       114 l~gktvGIIG-~G~IG~~va~~l~a~G~~V~~  144 (381)
T PRK00257        114 LAERTYGVVG-AGHVGGRLVRVLRGLGWKVLV  144 (381)
T ss_pred             cCcCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            3688999999 899999999999999998863

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=84.44  E-value=1.7  Score=32.33  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=26.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHH-HCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIAL-HMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~-~~G~~vi  120 (121)
                      .|.++.|.| .|.+|+..++.++ .+|++|+
T Consensus       144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~  173 (323)
T PRK15409        144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPIL  173 (323)
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEE
Confidence            578999999 8999999999998 8999876

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.30  E-value=4.3  Score=29.80  Aligned_cols=49  Identities=16%  Similarity=0.092  Sum_probs=36.8

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..|....---.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus       138 ~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt  186 (282)
T PRK14180        138 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT  186 (282)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            4555555555553332234699999999999999999999999999886

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=84.18  E-value=4.3  Score=28.55  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=23.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      -.+.+++|.| +|+.|..++..+...|++
T Consensus        23 l~~~rvlvlG-AGgAg~aiA~~L~~~G~~   50 (226)
T cd05311          23 IEEVKIVING-AGAAGIAIARLLLAAGAK   50 (226)
T ss_pred             ccCCEEEEEC-chHHHHHHHHHHHHcCcC
Confidence            4568999999 799999999888888875

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=84.08  E-value=2  Score=31.27  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=24.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++.+++|.| +|+.+++++.-+..+|+ +++
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~  153 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDIT  153 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEE
Confidence            578999999 79999999998888997 454

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.98  E-value=4.5  Score=29.61  Aligned_cols=48  Identities=15%  Similarity=0.207  Sum_probs=36.5

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus       138 ~PcTp~av~~lL-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt  186 (278)
T PRK14172        138 LPCTPNSVITLI-KSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT  186 (278)
T ss_pred             cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence            355555555555 33444 4799999999999999999999999999886

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.88  E-value=2.3  Score=32.97  Aligned_cols=29  Identities=31%  Similarity=0.371  Sum_probs=25.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++|+|.| .|.+|+.++.+++..|.+|+
T Consensus        15 ~~~~v~viG-~G~~G~~~A~~L~~~G~~V~   43 (480)
T PRK01438         15 QGLRVVVAG-LGVSGFAAADALLELGARVT   43 (480)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            467899999 79999999999999999875

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.81  E-value=4.5  Score=29.70  Aligned_cols=48  Identities=17%  Similarity=0.173  Sum_probs=36.7

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++.......| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus       138 ~PcTp~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt  186 (284)
T PRK14190        138 LPCTPHGILELL-KEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT  186 (284)
T ss_pred             CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence            455555555555 44444 4799999999999999999999999999886

>PLN02306 hydroxypyruvate reductase

Probab=83.50  E-value=2  Score=32.84  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=25.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHH-HCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIAL-HMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~-~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|+..++.++ .+|++|+
T Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~~fGm~V~  193 (386)
T PLN02306        164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLI  193 (386)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCEEE
Confidence            478899999 9999999999984 8999886

>KOG1610|consensus

Probab=83.44  E-value=5.1  Score=29.88  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+..|+|+|..+|.|..++.-+...|.+|++
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~A   58 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFA   58 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhcCCEEEE
Confidence            4567999999999999999988899998874

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=83.26  E-value=5.6  Score=23.30  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=23.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCC-CEE
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMG-CTV  119 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G-~~v  119 (121)
                      -.+.+++|.| +|.+|..+.+.+...+ .++
T Consensus        21 ~~~~~v~i~G-~G~~g~~~a~~l~~~~~~~v   50 (86)
T cd05191          21 LKGKTVVVLG-AGEVGKGIAKLLADEGGKKV   50 (86)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCCEE
Confidence            4678999999 6999999999998874 444

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=83.22  E-value=4.5  Score=29.61  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TV  119 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~v  119 (121)
                      .+.+++|.| +|+.+++++..+...|+ ++
T Consensus       123 ~~k~vlvlG-aGGaarAi~~~l~~~g~~~i  151 (288)
T PRK12749        123 KGKTMVLLG-AGGASTAIGAQGAIEGLKEI  151 (288)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEE
Confidence            567999999 68888887776667787 44

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=83.10  E-value=2.9  Score=27.74  Aligned_cols=29  Identities=14%  Similarity=0.127  Sum_probs=24.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|+|.| .|.+|.--++.....|++|.
T Consensus        12 ~~~~vlVvG-GG~va~rka~~Ll~~ga~V~   40 (157)
T PRK06719         12 HNKVVVIIG-GGKIAYRKASGLKDTGAFVT   40 (157)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            578899999 79999988888888898764

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.08  E-value=5.2  Score=29.38  Aligned_cols=48  Identities=19%  Similarity=0.161  Sum_probs=36.6

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus       139 ~PcTp~avi~ll-~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt  187 (284)
T PRK14177        139 LPCTPYGMVLLL-KEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT  187 (284)
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            455555455445 33343 4799999999999999999999999999886

>PRK07574 formate dehydrogenase; Provisional

Probab=83.05  E-value=2.3  Score=32.50  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=26.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|+..++.++.+|.+|+
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~  219 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLH  219 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            567899999 89999999999999999886

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=82.77  E-value=2.5  Score=31.56  Aligned_cols=29  Identities=28%  Similarity=0.359  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++-|.| .|.+|++..+.++.+|++|+
T Consensus       145 ~gktvGIiG-~GrIG~avA~r~~~Fgm~v~  173 (324)
T COG1052         145 RGKTLGIIG-LGRIGQAVARRLKGFGMKVL  173 (324)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhcCCCEEE
Confidence            488999999 99999999999999999875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.53  E-value=2.2  Score=33.22  Aligned_cols=29  Identities=28%  Similarity=0.466  Sum_probs=25.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|+|.| .|+.|.+++++++..|++|+
T Consensus        14 ~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~   42 (473)
T PRK00141         14 LSGRVLVAG-AGVSGRGIAAMLSELGCDVV   42 (473)
T ss_pred             cCCeEEEEc-cCHHHHHHHHHHHHCCCEEE
Confidence            466899999 89999999999999999775

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.43  E-value=4.6  Score=29.66  Aligned_cols=49  Identities=18%  Similarity=0.164  Sum_probs=36.5

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++.......| +..++ -.|.++.|.|.++-+|.-...++...|++|++
T Consensus       138 ~PcTp~avi~lL-~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv  187 (284)
T PRK14179        138 IPCTPAGIMEMF-REYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTL  187 (284)
T ss_pred             cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEE
Confidence            355555555455 33344 47999999998899999999999999998763

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=82.27  E-value=2.7  Score=31.32  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=26.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~  173 (330)
T PRK12480        145 KNMTVAIIG-TGRIGAATAKIYAGFGATIT  173 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            567899999 89999999999999999886

>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]

Probab=82.24  E-value=3.7  Score=27.87  Aligned_cols=33  Identities=27%  Similarity=0.540  Sum_probs=28.5

Q ss_pred             CCCCCCEEEEe---cCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVH---AGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~---ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++||+|+|.   -++|+.-.+++++.+..|++|.
T Consensus       112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vv  147 (179)
T COG0503         112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVV  147 (179)
T ss_pred             hCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEE
Confidence            45699999987   4589999999999999999875

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.21  E-value=5.8  Score=29.09  Aligned_cols=48  Identities=10%  Similarity=0.101  Sum_probs=36.4

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...|++|+
T Consensus       136 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt  184 (282)
T PRK14169        136 VASTPYGIMALL-DAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT  184 (282)
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence            455555555555 33344 4799999999999999999999999999885

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=82.14  E-value=2.5  Score=33.63  Aligned_cols=29  Identities=34%  Similarity=0.421  Sum_probs=24.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|.| +|++|.+++..+...|++|+
T Consensus       378 ~~k~vlIlG-aGGagrAia~~L~~~G~~V~  406 (529)
T PLN02520        378 AGKLFVVIG-AGGAGKALAYGAKEKGARVV  406 (529)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence            467899999 58999999999999998765

>KOG1203|consensus

Probab=82.13  E-value=2.8  Score=32.33  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=27.5

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -..-+.|+|.||+|.+|+..++.++..|..|.
T Consensus        76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vr  107 (411)
T KOG1203|consen   76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVR  107 (411)
T ss_pred             CCCCCeEEEecCCCchhHHHHHHHHHCCCeee
Confidence            34567899999999999999999999997654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.09  E-value=6.1  Score=29.26  Aligned_cols=48  Identities=17%  Similarity=0.194  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++.......| +..++ -.|.+|.+.|.++-+|.-...++...|++|+
T Consensus       139 ~PcTp~aii~lL-~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt  187 (301)
T PRK14194        139 TPCTPSGCLRLL-EDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT  187 (301)
T ss_pred             CCCcHHHHHHHH-HHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence            455555555555 44444 4699999999777999999999999999876

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=81.81  E-value=6  Score=29.11  Aligned_cols=48  Identities=19%  Similarity=0.179  Sum_probs=36.8

Q ss_pred             cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++....+..| +..++. .|.+++|.|.+.-+|.=+..++...+++|+
T Consensus       135 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt  183 (287)
T PRK14173        135 EPCTPAGVVRLL-KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT  183 (287)
T ss_pred             CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence            455555455455 444554 699999999999999999999999999886

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=81.68  E-value=6.4  Score=28.89  Aligned_cols=48  Identities=17%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus       137 ~PcTp~avi~lL-~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt  185 (282)
T PRK14166        137 LPCTPLGVMKLL-KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS  185 (282)
T ss_pred             cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            455555555555 43443 4799999999999999999999999999886

>PRK12831 putative oxidoreductase; Provisional

Probab=81.55  E-value=3.1  Score=32.36  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=26.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+..|+|.| +|+.|+.++..++.+|.+|+
T Consensus       138 ~~~~~V~IIG-~GpAGl~aA~~l~~~G~~V~  167 (464)
T PRK12831        138 KKGKKVAVIG-SGPAGLTCAGDLAKMGYDVT  167 (464)
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHhCCCeEE
Confidence            4688999999 79999999988888998775

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.95  E-value=6.6  Score=28.99  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=36.3

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus       140 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt  188 (294)
T PRK14187        140 IPCTPKGCLYLI-KTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT  188 (294)
T ss_pred             cCcCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE
Confidence            455545445455 33343 4699999999999999999999999999886

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.71  E-value=7.4  Score=28.55  Aligned_cols=48  Identities=17%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++....+..| +..++ -.|.+++|.|.+.-+|.=...+....||+|+
T Consensus       137 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt  185 (281)
T PRK14183        137 VPCTPLGVMELL-EEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD  185 (281)
T ss_pred             CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            455544444444 44444 3799999999888999999999999999875

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=80.51  E-value=7  Score=28.94  Aligned_cols=48  Identities=19%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus       147 ~PcTp~avi~lL-~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt  195 (299)
T PLN02516        147 LPCTPKGCLELL-SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT  195 (299)
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence            455555555555 33343 3699999999999999999999999999886

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=80.43  E-value=3.3  Score=32.18  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=26.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+.+|+|.| +|..|+.++..++..|.+|+
T Consensus       141 ~~~~~VvIIG-aGpAGl~aA~~l~~~G~~V~  170 (471)
T PRK12810        141 RTGKKVAVVG-SGPAGLAAADQLARAGHKVT  170 (471)
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHhCCCcEE
Confidence            4578999999 79999999999999998765

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.40  E-value=7  Score=28.71  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=36.6

Q ss_pred             cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++.......| +..++. .|.+++|.|.+.-+|.=+..+....+++|+
T Consensus       137 ~PcTp~avi~lL-~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt  185 (284)
T PRK14170        137 VPCTPAGIIELI-KSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT  185 (284)
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            455555455455 444443 699999999999999999999999999886

>PRK13984 putative oxidoreductase; Provisional

Probab=80.39  E-value=3.3  Score=33.18  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++++|+|.| +|..|+.++..++..|.+|+
T Consensus       280 ~~~~~~v~IIG-aG~aGl~aA~~L~~~G~~v~  310 (604)
T PRK13984        280 EKKNKKVAIVG-SGPAGLSAAYFLATMGYEVT  310 (604)
T ss_pred             ccCCCeEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence            35688999999 89999999999999998765

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.12  E-value=7.7  Score=28.68  Aligned_cols=48  Identities=17%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|++....+..| +..++ -.|.+++|.|.+.-+|.=+..+....||+|+
T Consensus       138 ~PcTp~aii~lL-~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt  186 (297)
T PRK14186        138 RSCTPAGVMRLL-RSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT  186 (297)
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence            355544444444 44444 3799999999999999999999999999886

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=80.07  E-value=8.5  Score=24.70  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=23.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ..+.+++|.| .|.+|...++..+..| .+|+
T Consensus        17 ~~~~~i~iiG-~G~~g~~~a~~l~~~g~~~v~   47 (155)
T cd01065          17 LKGKKVLILG-AGGAARAVAYALAELGAAKIV   47 (155)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEE
Confidence            4578899999 5999999998888775 4553

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
2vz8_A	2512	Crystal Structure Of Mammalian Fatty Acid Synthase		3e-43
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		2e-17
1pqw_A	198	Putative Enoyl Reductase Domain Of Polyketide Synth		2e-09
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		5e-09
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		3e-06
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		3e-06
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		3e-06
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		4e-06
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		6e-06
1iyz_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		2e-05
2cf2_D	295	Architecture Of Mammalian Fatty Acid Synthase Lengt		2e-05
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		2e-05
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		3e-05
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		3e-05
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		6e-05
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		4e-04
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		5e-04
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		5e-04
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		6e-04
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		7e-04
1iz0_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		7e-04

>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 100/121 (82%)
Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL PD++PG    +DC+LG+EFSGRD  GRRVMG+V A  LAT+VL      WEV
Sbjct: 1577 MLATGKLSPDSIPGKWLTRDCMLGMEFSGRDASGRRVMGMVPAEGLATSVLLLQHATWEV 1636
Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+ WTLEEA+++P+VY TAYYSL+VRG+M+PGES+L+H+G+GG+GQAAI+IAL  GC V+
Sbjct: 1637 PSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVF 1696
Query: 121  T 121
            T
Sbjct: 1697 T 1697

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 34  GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGE 93
           G RVMG++  ++     +AD   +  +PA W+   A+++P+V+ TAYY+L+    +RPGE
Sbjct: 289 GDRVMGMIP-KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGE 347
Query: 94  SLLVHAGAGGLGQAAISIALHMGCTVY 120
           SLLVH+ AGG+G AAI +A H+G  VY
Sbjct: 348 SLLVHSAAGGVGMAAIQLARHLGAEVY 374

>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase Length = 198

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 60  VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           +P      EA+T  V Y TA++SL   G++ PGE +L+H+  GG+G AA+SIA  +G  +
Sbjct: 7   IPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARI 66
Query: 120 YT 121
           YT
Sbjct: 67  YT 68

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 34  GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGE 93
           G RVM  V   + A  V     F++++P   +  EA+  P+ + TAY  L     +R G 
Sbjct: 85  GDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGM 144
Query: 94  SLLVHAGAGGLGQA 107
           S+LVH+  GG+GQA
Sbjct: 145 SVLVHSAGGGVGQA 158

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 47  ATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQ 106
           A   LA    ++++P K   ++ + I + Y TAY +LI    ++ GES+LVH  +GG+G 
Sbjct: 126 AEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGL 185
Query: 107 AAISIALHMGCTV 119
           AA  IA   G  +
Sbjct: 186 AACQIARAYGLKI 198

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 9   PDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARS----LATTVLADPSFLWEVPAKW 64
           P  L  D +G+   LG + +  +  G +V G+          A  V A P  + +   K 
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNI-GDKVXGIAGFPDHPCCYAEYVCASPDTIIQKLEKL 126
Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           +  +A+++P    TA  +L  + +++ G+ +L+HAGAGG+G  AI +A   G TV T
Sbjct: 127 SFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVIT 182

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 18  GQDCVLGLEFSGRDTK-----------GRRVMGLVAARSLATTVLADPSFLWEVPAKWTL 66
           G   +LGLE SG   +           G   M L+     A  V      L  +P   TL
Sbjct: 62  GASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTL 121
Query: 67  EEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISI 111
            +A+ IP  + TA+  L + G ++ G+ +L+HAG  G+G AAI +
Sbjct: 122 TQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQL 166

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 18  GQDCVLGLEFSGRDTK-----------GRRVMGLVAARSLATTVLADPSFLWEVPAKWTL 66
           G   +LGLE SG   +           G   M L+     A  V      L  +P   TL
Sbjct: 78  GASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTL 137
Query: 67  EEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISI 111
            +A+ IP  + TA+  L + G ++ G+ +L+HAG  G+G AAI +
Sbjct: 138 TQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQL 182

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 8   PPDALPGDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAARSLATTVLADPSFL 57
           P DA P        +LGLE SG              G +V GL    + A   L     +
Sbjct: 82  PKDASP--------ILGLELSGEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQI 133
Query: 58  WEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC 117
              P  +   +A+ +P  + T + +L     +  GES+L+H G  G+G  AI +A   G 
Sbjct: 134 LPFPKGYDAVKAAALPETFFTVWANLFQXAGLTEGESVLIHGGTSGIGTTAIQLARAFGA 193
Query: 118 TVY 120
            VY
Sbjct: 194 EVY 196

>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 24  GLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL 83
           G+E  G   +GRR   LV    LA  V      L  +P   + EEA+  PV + TAY +L
Sbjct: 60  GMEVVG-VVEGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLAL 118
Query: 84  IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
             R + RPGE +LV A AG LG AA+ +A  MG  V
Sbjct: 119 -KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRV 153

>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 24  GLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL 83
           G+E  G   +GRR   LV    LA  V      L  +P   + EEA+  PV + TAY +L
Sbjct: 60  GMEVVG-VVEGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLAL 118
Query: 84  IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
             R + RPGE +LV A AG LG AA+ +A  MG  V
Sbjct: 119 -KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRV 153

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 53  DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIA 112
           D   L   PA  T  +AS +P+V+ TA+  L+ R +++ G+++L+  G GG+G  AI IA
Sbjct: 112 DARLLASKPAALTXRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIA 171
Query: 113 LHMGCTVY 120
           L  G  V+
Sbjct: 172 LARGARVF 179

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 57  LWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
           L +VP+   L+ A+T+ V   TAY  L+   +++PG+S++ +A   G+GQA I IA  +G
Sbjct: 133 LIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALG 192

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 57  LWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
           L +VP+   L+ A+T+ V   TAY  L+   +++PG+S++ +A   G+GQA I IA  +G
Sbjct: 120 LIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALG 179

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 61  PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           P   + EEA+ IP+ + TA+  ++ +  +RPG+ +LV A   G+  AAI IA   G  V
Sbjct: 136 PKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARV 194

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 78  TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           TA Y L    K++PG+ +L+HA AGG+G   +  A H+G TV
Sbjct: 132 TAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATV 173

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 8   PPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE 67
           PP  +  +  G+   LGL  S R T G+ V   +A  S A   +   S    VP+     
Sbjct: 62  PPFDIGFEGIGEVVALGLSASARYTVGQAV-AYMAPGSFAEYTVVPASIATPVPS--VKP 118
Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           E  T+ V   TAY SL   G +  G+ +LV A AGG GQ A+ ++    C V
Sbjct: 119 EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHV 170

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 8   PPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE 67
           PP  +  +  G+   LGL  S R T G+ V   +A  S A   +   S    VP+     
Sbjct: 91  PPFDIGFEGIGEVVALGLSASARYTVGQAV-AYMAPGSFAEYTVVPASIATPVPS--VKP 147
Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           E  T+ V   TAY SL   G +  G+ +LV A AGG GQ A+ ++    C V
Sbjct: 148 EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHV 199

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 8   PPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE 67
           PP  +  +  G+   LGL  S R T G+ V   +A  S A   +   S    VP+     
Sbjct: 83  PPFDIGFEGIGEVVALGLSASARYTVGQAV-AYMAPGSFAEYTVVPASIATPVPS--VKP 139
Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           E  T+ V   TAY SL   G +  G+ +LV A AGG GQ A+ ++    C V
Sbjct: 140 EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHV 191

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 46  LATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLG 105
            A  V+ADP+F+  +P      E + +     T Y  L V    +PG+ +++ +G GGLG
Sbjct: 145 FAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVT-DTKPGDWVVI-SGIGGLG 202
Query: 106 QAAISIALHMGCTV 119
             A+  A  MG  V
Sbjct: 203 HMAVQYARAMGLNV 216

>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 35  RRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGES 94
           RR   LV    LA  V      L  +P   + EEA+  PV + TAY +L  R + RPGE 
Sbjct: 70  RRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLAL-KRAQARPGEK 128
Query: 95  LLVHAGAGGLGQAAISIALHMGCTV 119
           +LV A AG LG AA+ +A   G  V
Sbjct: 129 VLVQAAAGALGTAAVQVARAXGLRV 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	6e-50
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	1e-37
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	4e-32
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	7e-26
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-25
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-25
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-25
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	7e-25
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	7e-22
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-21
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	3e-21
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	4e-21
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-21
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	4e-20
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	3e-19
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	9e-19
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	6e-18
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-17
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-17
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-16
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	3e-16
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	5e-15
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	1e-13
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-13
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-12
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	6e-12
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	8e-12
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	9e-12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-11
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	3e-10
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-07
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	3e-06
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	4e-06
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-05
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score =  168 bits (428), Expect = 6e-50
 Identities = 77/121 (63%), Positives = 100/121 (82%)

Query: 1    MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
            MLA+GKL PD++PG    +DC+LG+EFSGRD  GRRVMG+V A  LAT+VL      WEV
Sbjct: 1577 MLATGKLSPDSIPGKWLTRDCMLGMEFSGRDASGRRVMGMVPAEGLATSVLLLQHATWEV 1636

Query: 61   PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            P+ WTLEEA+++P+VY TAYYSL+VRG+M+PGES+L+H+G+GG+GQAAI+IAL  GC V+
Sbjct: 1637 PSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVF 1696

Query: 121  T 121
            T
Sbjct: 1697 T 1697

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score =  133 bits (336), Expect = 1e-37
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 1   MLASGKLPPDALPG-DLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWE 59
           ++A G  P  A  G + AG     G   +G    G RVMG+   ++     +AD   +  
Sbjct: 256 LIALGMYPGVASLGSEGAGVVVETGPGVTGLA-PGDRVMGM-IPKAFGPLAVADHRMVTR 313

Query: 60  VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           +PA W+   A+++P+V+ TAYY+L+    +RPGESLLVH+ AGG+G AAI +A H+G  V
Sbjct: 314 IPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEV 373

Query: 120 YT 121
           Y 
Sbjct: 374 YA 375

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score =  111 bits (279), Expect = 4e-32
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 55  SFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALH 114
             +  +P      EA+T  V Y TA++SL   G++ PGE +L+H+  GG+G AA+SIA  
Sbjct: 2   DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM 61

Query: 115 MGCTVYT 121
           +G  +YT
Sbjct: 62  IGARIYT 68

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 98.0 bits (245), Expect = 7e-26
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 22  VLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
           +LGLE SG              G +V GL    + A   L     +   P  +   +A+ 
Sbjct: 88  ILGLELSGEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAA 147

Query: 72  IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           +P  + T + +L     +  GES+L+H G  G+G  AI +A   G  VY 
Sbjct: 148 LPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYA 197

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 97.3 bits (243), Expect = 1e-25
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 21  CVLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70
            V G E SG              G RVM  V   + A  V     F++++P   +  EA+
Sbjct: 62  LVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAA 121

Query: 71  TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
             P+ + TAY  L     +R G S+LVH+  GG+GQA   +   +      
Sbjct: 122 AFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVF 172

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 96.9 bits (242), Expect = 2e-25
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 22  VLGLEFSG-----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70
           +LGLE SG               G   M L+     A  V      L  +P   TL +A+
Sbjct: 82  ILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAA 141

Query: 71  TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
            IP  + TA+  L + G ++ G+ +L+HAG  G+G AAI +    G     
Sbjct: 142 AIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLV 192

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 96.9 bits (242), Expect = 2e-25
 Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 22  VLGLEFSGRDTK---------GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTI 72
           V G+E +G             G RVM        A  V   PS +   P +    EA  +
Sbjct: 81  VPGIETAGVVRSAPEGSGIKPGDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVAL 140

Query: 73  PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
              Y T Y++   RG++R GE++LV   AGG+G AAI IA  MG  V  
Sbjct: 141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIA 189

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 94.5 bits (236), Expect = 7e-25
 Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 22  VLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYY 81
           + G+E  G   +GRR   LV    LA  V      L  +P   + EEA+  PV + TAY 
Sbjct: 58  IPGMEVVGV-VEGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYL 116

Query: 82  SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           +L  R + RPGE +LV A AG LG AA+ +A  MG  V  
Sbjct: 117 AL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLA 155

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 87.3 bits (217), Expect = 7e-22
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 22  VLGLEFSG----------RDTKGRRVMGLVAAR-SLATTVLADPSFLWEVPAKWTLEEAS 70
           V G E                 G  V+   A   +  T  +     L +VP+   L+ A+
Sbjct: 87  VGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA 146

Query: 71  TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           T+ V   TAY  L+   +++PG+S++ +A   G+GQA I IA  +G   
Sbjct: 147 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRT 195

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 85.7 bits (213), Expect = 2e-21
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 22  VLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
           + G E  G          R+  G+RV+ L    +    V     F+  +P       A+ 
Sbjct: 65  IPGYEGVGIVENVGAFVSRELIGKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQ 124

Query: 72  IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           + +   TA+ +      ++  + LLV+A    +G     ++  +   +  
Sbjct: 125 MYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIA 174

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 85.3 bits (212), Expect = 3e-21
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 22  VLGLEFSG----------RDTKGRRVM-GLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70
             G + +G             KG RV      +   A   LA    ++++P K   ++ +
Sbjct: 90  TPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGA 149

Query: 71  TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
            I + Y TAY +LI    ++ GES+LVH  +GG+G AA  IA   G  +  
Sbjct: 150 AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILG 200

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 84.9 bits (211), Expect = 4e-21
 Identities = 29/106 (27%), Positives = 48/106 (45%)

Query: 16  LAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVV 75
           L+   C   L          +++G     + A  V+   + L   P   + EEA+ IP+ 
Sbjct: 91  LSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLT 150

Query: 76  YATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           + TA+  ++ +  +RPG+ +LV A   G+  AAI IA   G  V  
Sbjct: 151 FLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIA 196

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 85.0 bits (211), Expect = 5e-21
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 22/132 (16%)

Query: 5   GKLPPDALPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAAR-----SLATT 49
                  LP        +LG++ +G              G  V GL         + A  
Sbjct: 56  APHAQQPLPA-------ILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQF 108

Query: 50  VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAI 109
              D   L   PA  T+ +AS +P+V+ TA+  L+ R +++ G+++L+  G GG+G  AI
Sbjct: 109 AAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAI 168

Query: 110 SIALHMGCTVYT 121
            IAL  G  V+ 
Sbjct: 169 QIALARGARVFA 180

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 13  PGD----LAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEE 68
           PGD          + GL      T     +G      L+  V+    +    P      E
Sbjct: 107 PGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAE 166

Query: 69  ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           AST+P    TA+++L+ +G +R G+ ++V  G GG+    + IA   G  V  
Sbjct: 167 ASTLPCAGLTAWFALVEKGHLRAGDRVVVQ-GTGGVALFGLQIAKATGAEVIV 218

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 8   PPDA--LPG-DLAGQDCVLGLEFSGRDTKGRRV---MGLVAARSLATTVLADPSFLWEVP 61
           P       G +  G     G E   +   G+RV    GL    S A   +A+ +    + 
Sbjct: 76  PRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLL 135

Query: 62  AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
                E+ + + V   TA   +    K    ++ ++ AGA  L +  I +A   G     
Sbjct: 136 DTVRDEDGAAMIVNPLTAIA-MFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIV 194

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 78.9 bits (195), Expect = 9e-19
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 8   PPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE 67
           PP  +  +  G+   LGL  S R T G+ V  + A  S A   +   S    VP+     
Sbjct: 83  PPFDIGFEGIGEVVALGLSASARYTVGQAVAYM-APGSFAEYTVVPASIATPVPS--VKP 139

Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           E  T+ V   TAY SL   G +  G+ +LV A AGG GQ A+ ++    C V
Sbjct: 140 EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHV 191

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 77.1 bits (190), Expect = 6e-18
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 13  PGD----LAGQDCVLGLEFSGRDTKGRRVMGLVAAR---SLATTVLADPSFLWEVPAKWT 65
            GD          +   +                      LA   L   + L   P   +
Sbjct: 141 AGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLS 200

Query: 66  LEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
            EEA+   +V +TAY  L+ R    M+ G+++L+   +GGLG  A   AL  G     
Sbjct: 201 WEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPIC 258

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 15/114 (13%)

Query: 22  VLGLEFSGRDTK----------GRRVMGLVAAR----SLATTVLADPSFLWEVPAKWTLE 67
            LG +FSG   +          G +VMG+          A  V A P  + +   K +  
Sbjct: 70  GLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFL 129

Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           +A+++P    TA  +L  + +++ G+ +L+HAGAGG+G  AI +A   G TV T
Sbjct: 130 QAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVIT 182

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 23/135 (17%)

Query: 8   PPDALPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAAR-SLATTVLADPSF 56
           P               G E                 G  V+       +  T  L +   
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDD 120

Query: 57  LWEV-----------PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV-HAGAGGL 104
             ++           P   T+ + +TI V   TAY  L    K+ PG+   + + G   +
Sbjct: 121 FIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAV 180

Query: 105 GQAAISIALHMGCTV 119
           G+ A  I   +    
Sbjct: 181 GKYASQIGKLLNFNS 195

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAG 102
            LA   +   S L   PA  T EEA+  P+   TAY  L+     +M+ G+ +L+   +G
Sbjct: 172 GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASG 231

Query: 103 GLGQAAISIALHMGCTVYT 121
           GLG  AI    + G     
Sbjct: 232 GLGSYAIQFVKNGGGIPVA 250

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 17/117 (14%)

Query: 22  VLGLEFSG----------RDTKGRRVMGLVAAR---SLATTVLADPSFLWEVPAKWTLEE 68
            LG + SG              G  V   V      +L+  V+   + +   P   T  +
Sbjct: 97  TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQ 156

Query: 69  ASTIPVVYATAYYSLIVRGKMR----PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           A+++P V  TA+ ++   G +      G+ +L+   +GG+G  AI +       V  
Sbjct: 157 AASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTA 213

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 68.6 bits (168), Expect = 5e-15
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 31/145 (21%)

Query: 8   PPDA-LPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAARSLATT------- 49
           P D  + G  A     LG +++G              G RV G        T        
Sbjct: 50  PSDTSMRGQFATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQ 109

Query: 50  -VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRP------------GESLL 96
             +       ++P   + E+A+ +P   +TA  ++ + G   P               +L
Sbjct: 110 YTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVL 169

Query: 97  VHAGAGGLGQAAISIALHMGCTVYT 121
           V+ G+       + +    G     
Sbjct: 170 VYGGSTATATVTMQMLRLSGYIPIA 194

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 64.6 bits (157), Expect = 1e-13
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 11/114 (9%)

Query: 18  GQDCVLGLEFSGR----------DTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE 67
                +G E +G                + +  +     +            +P   T  
Sbjct: 89  DASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGGAMYSQYRCIPADQCLVLPEGATPA 148

Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           + ++  V   TA   ++   ++    +L+  A A  LGQ    I L  G  +  
Sbjct: 149 DGASSFVNPLTALG-MVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVN 201

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK------MRPGESLLVH 98
           S A   L +   + + P   + E+A ++P+   TAY +L              G++LL+ 
Sbjct: 98  SNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLII 157

Query: 99  AGAGGLGQAAISIALHMGCTVYT 121
            GAGG+G  A  IA   G  V T
Sbjct: 158 NGAGGVGSIATQIAKAYGLRVIT 180

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 22/134 (16%)

Query: 1   MLASGKLPPDALPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAAR---SLA 47
                     +          V G++ +G              GRRV    + +   S A
Sbjct: 47  KFIKANPINWSNGH-------VPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFA 99

Query: 48  TTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQA 107
              + +   +  +P   + E A+ +P    TA+ +   +  +     +L+  G G +   
Sbjct: 100 EFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIV-GFGAVNNL 157

Query: 108 AISIALHMGCTVYT 121
              +  + G  V  
Sbjct: 158 LTQMLNNAGYVVDL 171

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRP-----GESLLVHA 99
           + A   L D   +   P      EA+ +P+   TA+ +   R  +         ++L+  
Sbjct: 120 TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVG 179

Query: 100 GAGGLGQAAISIALHM-GCTVYT 121
           GAGG+G  A+ IA      TV  
Sbjct: 180 GAGGVGSIAVQIARQRTDLTVIA 202

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 4   SGKLPPDALPGDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAAR-SLATTVLA 52
           SG  PP +LP         LG E +G  +K          G RV+   +A  + ++    
Sbjct: 49  SGLYPPPSLP-------SGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNI 101

Query: 53  DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIA 112
                  +PA  + E+A+   +   T YY L    +++P E  L HA AGG+G  A   A
Sbjct: 102 IADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA 161

Query: 113 LHMGCTV 119
             +G  +
Sbjct: 162 KALGAKL 168

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 59.1 bits (144), Expect = 9e-12
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 4   SGKLPPDALPGDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAAR-SLATTVLA 52
           SG  P   LP         LG E +G              G RV        + +   + 
Sbjct: 49  SGLYPAPFLPS-------GLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVL 101

Query: 53  DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIA 112
             + L ++    + E+A+ + +   T  Y L    +++PGE +L HA AGG+G  A   A
Sbjct: 102 PEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWA 161

Query: 113 LHMGCTV 119
             +G  +
Sbjct: 162 KALGAKL 168

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 7   LPPDALPGDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAAR-SLATTVLADPS 55
           L     P        V+G E +    +          G RV   +    + +   L    
Sbjct: 55  LVVGEPP-------IVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAE 107

Query: 56  FLWEVPAKWTLEEAS--TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIAL 113
            L +VP    L++     + +   TA Y L    K++PG+ +L+HA AGG+G   +  A 
Sbjct: 108 KLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWAR 167

Query: 114 HMGCTV 119
           H+G TV
Sbjct: 168 HLGATV 173

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 22  VLGLEFSGRDTK----------GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
           VLG E SG              G +V  +  +     + ++    + ++P   + EE   
Sbjct: 66  VLGREASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125

Query: 72  ---IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
                +   TA         ++ G+ +L+ A AGG+G     +    G   
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHT 176

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGL 104
           + A  V+           +    EA+ +     T Y ++  +  + P ++LLV    GGL
Sbjct: 125 AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGL 183

Query: 105 GQAAISIALHMG 116
           G  A+ IA  + 
Sbjct: 184 GTMAVQIAKAVS 195

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 78  TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           TAY         + GE++ V A +G +GQ    +A  MGC V
Sbjct: 142 TAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYV 183

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 78  TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
           TAY+ L+    ++ GE++LV A AG +G     IA   GC V
Sbjct: 132 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKV 173

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 26  EFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL-I 84
              G    G    G     S+A  ++ D +             A+ +     T Y+++  
Sbjct: 110 ADLGITPPGLGSPG-----SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 85  VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118
           V   + PG + +V  G GGLG   I I   +   
Sbjct: 165 VLPLLGPGSTAVVI-GVGGLGHVGIQILRAVSAA 197

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 49  TVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAA 108
            VL   + + +V  K  L+  +      ATAY++     +   G+++++  GAG LG   
Sbjct: 153 IVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVI-QGAGPLGLFG 211

Query: 109 ISIALHMG 116
           + IA  +G
Sbjct: 212 VVIARSLG 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 43/151 (28%)

Query: 9   PDALPGDLAGQDCVLGLEFSGRDTKGRRVMGL-------VAARSLATTVLADPSFLWEVP 61
            D     L+ ++    +      +   R+          +  + +   +  +  FL    
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-- 96

Query: 62  AKWTLE--EASTIPVVYATAYYSL-----------IVRGK-----------MRPGESLLV 97
                E  + S +  +Y      L           + R +           +RP +++L+
Sbjct: 97  -PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 98  HAGAGGLGQ---AA-----ISIALHMGCTVY 120
             G  G G+   A        +   M   ++
Sbjct: 156 D-GVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.95
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.95
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.95
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.94
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.94
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.94
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.94
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.94
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.94
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.93
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.93
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.93
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.93
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.93
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.93
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.93
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.93
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.93
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.93
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.93
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.93
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.92
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.92
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.92
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.92
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.92
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.92
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.92
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.92
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.92
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.92
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.92
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.92
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.92
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.92
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.92
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.91
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.91
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.91
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.91
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.91
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.91
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.91
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.91
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.91
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.91
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.91
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.91
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.91
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.91
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.91
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.91
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.9
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.9
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.9
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.9
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.9
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.9
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.9
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.89
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.89
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.89
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.88
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.88
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.88
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.88
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.88
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.87
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.87
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.86
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.54
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.29
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.59
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.2
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.19
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.16
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.14
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.1
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.04
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.03
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.02
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.0
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.97
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.96
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.95
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.94
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.94
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.93
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.92
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.92
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	95.92
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.91
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.91
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.89
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.87
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	95.87
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.87
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.85
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.85
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.85
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.84
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.84
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.84
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.83
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.83
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	95.83
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.83
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.82
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.82
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.81
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.81
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.81
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.79
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.79
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	95.79
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	95.79
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.78
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.78
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.77
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.77
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.76
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.75
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.75
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.74
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	95.73
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.73
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.73
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.73
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.72
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	95.72
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.72
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.71
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.7
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.69
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.68
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.67
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.67
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.66
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.64
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.64
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	95.64
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	95.63
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.62
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.55
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.55
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.53
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.53
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.53
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.52
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.52
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.49
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.47
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.47
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.42
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.39
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.37
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.36
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.3
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.24
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.23
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.23
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.18
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.17
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.13
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.02
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.01
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.0
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.0
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.95
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.9
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.9
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	94.84
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.84
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.79
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.77
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.76
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.73
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.73
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.71
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.71
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	94.7
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	94.63
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.61
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	94.61
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.6
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.59
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.48
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.47
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.39
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.35
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	94.34
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.31
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.17
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	94.15
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	94.15
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.11
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	94.1
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	93.92
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	93.91
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	93.87
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	93.81
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	93.72
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.6
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	93.6
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	93.57
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	93.57
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	93.5
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	93.43
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	93.39
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	93.39
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.34
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.2
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	93.18
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.14
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	92.95
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	92.9
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	92.89
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	92.88
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	92.85
4f6c_A	427	AUSA reductase domain protein; thioester reductase	92.79
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	92.62
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.52
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	92.48
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.08
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	91.83
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	91.8
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.63
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	91.46
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.36
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	91.28
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	91.28
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	90.78
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.73
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	89.69
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	89.55
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	89.53
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.18
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.15
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	89.12
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	88.98
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	88.9
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	88.88
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	88.76
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	88.74
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	88.71
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	88.51
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	88.47
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	88.36
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	88.24
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	88.11
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	88.08
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	87.98
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	87.8
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	87.78
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	87.7
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	87.68
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	87.54
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	87.5
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	87.37
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	87.18
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	86.98
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	86.97
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	86.84
4f6l_B	508	AUSA reductase domain protein; thioester reductase	86.7
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	86.69
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	86.59
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	86.56
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	86.49
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	86.49
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	86.29
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	86.29
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	86.2
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	86.07
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	86.04
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	85.47
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	85.37
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	85.35
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	85.3
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	85.17
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	84.94
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	84.92
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	84.77
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	84.76
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	84.7
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	84.66
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	84.6
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	84.57
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	84.5
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	84.42
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	84.32
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	84.08
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	84.01
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	84.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	83.85
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	83.59
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	83.44
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	83.43
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	83.17
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	83.1
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	83.07
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	82.89
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	82.7
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	81.73
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	81.59
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	81.55
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	81.13
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	80.99
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	80.89
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	80.81
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	80.74
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	80.57
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	80.35
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	80.05

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.95  E-value=5.7e-27  Score=169.49  Aligned_cols=102  Identities=19%  Similarity=0.240  Sum_probs=96.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~   84 (121)
                      .+|.++|||++|+|          ++||||++...   +|+|+||++++++.++++|+++++++|+++++++.|||+++ 
T Consensus        57 ~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-  135 (315)
T 3goh_A           57 SNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-  135 (315)
T ss_dssp             CTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-
T ss_pred             CCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-
Confidence            56899999999998          78999998753   69999999999999999999999999999999999999999 


Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +..++++||+|||+|+ |++|++++|+||.+|++|++
T Consensus       136 ~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~  171 (315)
T 3goh_A          136 EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDL  171 (315)
T ss_dssp             TTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEE
T ss_pred             hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEE
Confidence            9999999999999998 99999999999999999874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.95  E-value=7.8e-27  Score=170.73  Aligned_cols=104  Identities=36%  Similarity=0.514  Sum_probs=99.3

Q ss_pred             CCCCccCcceEEEE---------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430          18 GQDCVLGLEFSGRD---------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK   88 (121)
Q Consensus        18 ~~~~~~G~e~~G~V---------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~   88 (121)
                      .+|.++|||++|+|         ++||+|+++..+|+|+||++++++.++++|+++++++++++++++.|||+++.+..+
T Consensus        77 ~~p~v~G~E~~G~V~~vG~~v~~~vGDrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~  156 (342)
T 4eye_A           77 EPPFVPGIETAGVVRSAPEGSGIKPGDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQ  156 (342)
T ss_dssp             CSSBCCCSEEEEEEEECCTTSSCCTTCEEEEECSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSC
T ss_pred             CCCCccceeEEEEEEEECCCCCCCCCCEEEEecCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcC
Confidence            57899999999998         689999999888999999999999999999999999999999999999999988999


Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +++|++|||+||+|++|++++|+|+.+|++|++
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~  189 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIA  189 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence            999999999999999999999999999999873

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.95  E-value=5.7e-27  Score=172.09  Aligned_cols=104  Identities=30%  Similarity=0.524  Sum_probs=99.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG   87 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~   87 (121)
                      .+|.++|||++|+|          ++||+|+++..+|+|+||++++++.++++|+++++++++++++++.|||+++.+.+
T Consensus        84 ~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~  163 (353)
T 4dup_A           84 DASPILGLELSGEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMA  163 (353)
T ss_dssp             TSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTT
T ss_pred             CCCCccccccEEEEEEECCCCCCCCCCCEEEEecCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhc
Confidence            46889999999998          78999999988899999999999999999999999999999999999999998889


Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++|++|||+||+|++|++++|+++..|++|++
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~  197 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYA  197 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEE
Confidence            9999999999999999999999999999999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.94  E-value=7.1e-27  Score=170.64  Aligned_cols=104  Identities=17%  Similarity=0.184  Sum_probs=99.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG   87 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~   87 (121)
                      .+|.++|||++|+|          ++||+|+++..+|+|+||++++++.++++|+++|+++|+++++.++|+|+++.+..
T Consensus        61 ~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~  140 (340)
T 3gms_A           61 PLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETL  140 (340)
T ss_dssp             CSSBCCCSCCEEEEEEECTTSCGGGTTCEEEECSSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCcCCcceEEEEEEeCCCCCCCCCCCEEEecCCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhc
Confidence            57899999999999          78999999888899999999999999999999999999999999999999998999


Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++|++|||+|++|++|++++|+|+.+|++|++
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~  174 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIA  174 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEE
Confidence            9999999999998889999999999999999873

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.94  E-value=2.1e-26  Score=167.04  Aligned_cols=103  Identities=34%  Similarity=0.523  Sum_probs=96.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.++|||++|+|          ++||+|++..    .+|+|+||++++++.++++|+++++++++++++++.|||+++
T Consensus        66 ~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al  145 (321)
T 3tqh_A           66 NLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL  145 (321)
T ss_dssp             SCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH
Confidence            56889999999998          7899999885    369999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                       +..++++||+|||+||+|++|++++|+||.+|++|++
T Consensus       146 -~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~  182 (321)
T 3tqh_A          146 -NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVIT  182 (321)
T ss_dssp             -HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             -HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEE
Confidence             8899999999999999999999999999999999873

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.94  E-value=3.5e-26  Score=167.35  Aligned_cols=105  Identities=32%  Similarity=0.589  Sum_probs=98.4

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc-----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHH
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV-----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYY   81 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~   81 (121)
                      ..+|.++|||++|+|          ++||+|++..     .+|+|+||++++++.++++|+++++++++++++++.|||+
T Consensus        61 ~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~  140 (343)
T 3gaz_A           61 QPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWE  140 (343)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHH
T ss_pred             CCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHH
Confidence            357899999999998          7899999885     3699999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++.+..++++|++|||+||+|++|++++|+|+..|++|++
T Consensus       141 ~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~  180 (343)
T 3gaz_A          141 GLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFA  180 (343)
T ss_dssp             HHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEE
Confidence            9988899999999999999999999999999999999874

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.94  E-value=1.8e-26  Score=169.60  Aligned_cols=103  Identities=28%  Similarity=0.336  Sum_probs=96.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      .+|.++|||++|+|          ++||+|++.. .+|+|+||++++++.++++|+++++++|+++++++.|||+++.+.
T Consensus        83 ~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~  162 (357)
T 1zsy_A           83 ELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDF  162 (357)
T ss_dssp             CSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHS
T ss_pred             CCCccccceEEEEEEEeCCCCCCCCCCCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHH
Confidence            46889999999998          7899999875 359999999999999999999999999999999999999999888


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++||+|||+||+|++|++++|+||.+|++++
T Consensus       163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi  196 (357)
T 1zsy_A          163 EQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTI  196 (357)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEE
T ss_pred             hccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999999999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.94  E-value=5.1e-26  Score=168.09  Aligned_cols=103  Identities=24%  Similarity=0.311  Sum_probs=96.5

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEcc---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLVA---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      +|.++|||++|+|          ++||+|++...   +|+|+||++++++.++++|+++++++|+++++++.|||+++.+
T Consensus        94 ~P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~  173 (375)
T 2vn8_A           94 FPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINK  173 (375)
T ss_dssp             CSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTT
T ss_pred             CCcccceeeeEEEEEeCCCCCCCCCCCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHH
Confidence            6899999999998          78999998753   6999999999999999999999999999999999999999977


Q ss_pred             hcC----CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          86 RGK----MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        86 ~~~----~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .++    +++|++|||+||+|++|++++|+|+.+|++|++
T Consensus       174 ~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~  213 (375)
T 2vn8_A          174 VGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTA  213 (375)
T ss_dssp             TTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             hcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            788    999999999999999999999999999999873

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.94  E-value=5.1e-26  Score=163.68  Aligned_cols=102  Identities=38%  Similarity=0.541  Sum_probs=96.6

Q ss_pred             CCCCccCcceEEEEccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEE
Q psy3430          18 GQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV   97 (121)
Q Consensus        18 ~~~~~~G~e~~G~V~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli   97 (121)
                      .+|.++|||++|+|. ||+|++...+|+|+||++++++.++++|+++|+++++++++++.|||+++.+.. +++|++|||
T Consensus        54 ~~p~i~G~e~~G~V~-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV  131 (302)
T 1iz0_A           54 HPPFIPGMEVVGVVE-GRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLV  131 (302)
T ss_dssp             CSSBCCCCEEEEEET-TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEE
T ss_pred             CCCCcccceEEEEEE-CcEEEEecCCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEE
Confidence            468999999999999 999999887899999999999999999999999999999999999999997677 999999999


Q ss_pred             ecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          98 HAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        98 ~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++|++|++++|+++.+|++|++
T Consensus       132 ~Ga~G~vG~~~~~~a~~~Ga~Vi~  155 (302)
T 1iz0_A          132 QAAAGALGTAAVQVARAMGLRVLA  155 (302)
T ss_dssp             SSTTBHHHHHHHHHHHHTTCEEEE
T ss_pred             ECCCcHHHHHHHHHHHHCCCEEEE
Confidence            999999999999999999998863

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=1e-25  Score=165.49  Aligned_cols=104  Identities=31%  Similarity=0.446  Sum_probs=97.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc-CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA-ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      .+|.++|||++|+|          ++||+|++... +|+|+||++++++.++++|+++++++++++++++.|||+++.+.
T Consensus        86 ~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~  165 (351)
T 1yb5_A           86 LLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHS  165 (351)
T ss_dssp             CSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTT
T ss_pred             CCCCcCCceeEEEEEEECCCCCCCCCCCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHh
Confidence            46899999999998          78999998753 69999999999999999999999999999999999999999878


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .++++|++|||+|++|++|++++|+++..|++|++
T Consensus       166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~  200 (351)
T 1yb5_A          166 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILG  200 (351)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             hCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            99999999999999999999999999999999863

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.93  E-value=8.4e-26  Score=165.55  Aligned_cols=104  Identities=33%  Similarity=0.534  Sum_probs=97.9

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      ..+|.++|||++|+|          ++||+|+++..+|+|+||++++++.++++|+++++++++++++++.|||+++.+.
T Consensus        58 ~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~  137 (349)
T 4a27_A           58 PKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEV  137 (349)
T ss_dssp             CCSSBCCCSEEEEEEEEECTTCCSCCTTCEEEEECSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTT
T ss_pred             CCCCccccceeEEEEEEeCCCCCCCCCCCEEEEecCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            357899999999998          7899999998889999999999999999999999999999999999999999889


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      .++++||+|||+|++|++|++++|+|+.+| ++|+
T Consensus       138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~  172 (349)
T 4a27_A          138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVF  172 (349)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEE
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEE
Confidence            999999999999988999999999999995 5776

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.93  E-value=9.3e-26  Score=165.68  Aligned_cols=104  Identities=33%  Similarity=0.517  Sum_probs=98.1

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      .+|.++|||++|+|           ++||+|+++..+|+|+||++++++.++++|+++++++|+++++++.|||+++.+.
T Consensus        78 ~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~  157 (354)
T 2j8z_A           78 GASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLV  157 (354)
T ss_dssp             TSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTT
T ss_pred             CCCcccceeeEEEEEEECCCcCCCCCCCCEEEEecCCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHh
Confidence            46889999999998           5799999988789999999999999999999999999999999999999999888


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .++++|++|||+||+|++|++++|+++..|++|++
T Consensus       158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~  192 (354)
T 2j8z_A          158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLV  192 (354)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEE
Confidence            99999999999999999999999999999999863

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.93  E-value=1.3e-25  Score=164.38  Aligned_cols=105  Identities=30%  Similarity=0.345  Sum_probs=97.9

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      ..+|.++|||++|+|          ++||+|++..   .+|+|+||++++++.++++|+++++++|+++++++.|||+++
T Consensus        57 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l  136 (346)
T 3fbg_A           57 SKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETL  136 (346)
T ss_dssp             SSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHH
T ss_pred             CCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHH
Confidence            357899999999998          7899999863   369999999999999999999999999999999999999999


Q ss_pred             HhhcCCC------CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          84 IVRGKMR------PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        84 ~~~~~~~------~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+..+++      +|++|||+||+|++|++++|+|+.+|++|++
T Consensus       137 ~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~  180 (346)
T 3fbg_A          137 FDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVIT  180 (346)
T ss_dssp             HTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEE
Confidence            8899998      9999999998999999999999999999874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.93  E-value=9.4e-26  Score=163.83  Aligned_cols=104  Identities=25%  Similarity=0.263  Sum_probs=97.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      .+|.++|||++|+|          ++||+|+... .+|+|+||++++++.++++|+++++++++++++.+.|+|+++.+.
T Consensus        56 ~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~  135 (325)
T 3jyn_A           56 FLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQT  135 (325)
T ss_dssp             SSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCceeEEEEEEECCCCCCCCCCCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHh
Confidence            46889999999998          7899998865 469999999999999999999999999999999999999999888


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .++++|++|||+||+|++|++++|+++.+|++|++
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~  170 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIG  170 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEE
Confidence            99999999999999999999999999999999873

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.93  E-value=3.5e-25  Score=163.54  Aligned_cols=105  Identities=17%  Similarity=0.231  Sum_probs=96.1

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc--------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHH
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV--------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYAT   78 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~--------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~t   78 (121)
                      ..+|.++|||++|+|          ++||||++..        .+|+|+||++++++.++++|+++++++|+.+++++.|
T Consensus        60 ~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~t  139 (371)
T 3gqv_A           60 ATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGIST  139 (371)
T ss_dssp             CCTTSCCCSEEEEEEEEECTTCCSCCTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHH
T ss_pred             CCCCccCccccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHH
Confidence            346899999999998          7899999885        3599999999999999999999999999999999999


Q ss_pred             HHHHHHhh-cCC-----------CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          79 AYYSLIVR-GKM-----------RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        79 a~~~l~~~-~~~-----------~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ||+++.+. .++           ++|++|||+||+|++|++++|+||.+|++|++
T Consensus       140 a~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~  194 (371)
T 3gqv_A          140 AGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIA  194 (371)
T ss_dssp             HHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            99999777 553           89999999998899999999999999999873

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.93  E-value=2e-25  Score=164.42  Aligned_cols=104  Identities=26%  Similarity=0.420  Sum_probs=96.4

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc------------------------cCCceeEEEEeCCCCeEEcCC
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV------------------------AARSLATTVLADPSFLWEVPA   62 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~------------------------~~g~~~~~~~v~~~~~~~~p~   62 (121)
                      ..+|.++|||++|+|          ++||+|++..                        .+|+|+||++++++.++++|+
T Consensus        81 ~~~P~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~  160 (363)
T 3uog_A           81 LAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPK  160 (363)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCT
T ss_pred             CCCCcCcccceEEEEEEECCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCC
Confidence            357899999999999          7899999861                        258999999999999999999


Q ss_pred             CCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          63 KWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        63 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++++|+++++++.|||+++.+..++++|++|||+| +|++|++++|+||.+|++|++
T Consensus       161 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~  218 (363)
T 3uog_A          161 SLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIV  218 (363)
T ss_dssp             TSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE
Confidence            9999999999999999999998889999999999999 899999999999999999874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.93  E-value=2.8e-25  Score=161.74  Aligned_cols=103  Identities=21%  Similarity=0.183  Sum_probs=96.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeC-CCCeEEcCCCCCHHH---HhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLAD-PSFLWEVPAKWTLEE---ASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~-~~~~~~~p~~~~~~~---aa~l~~~~~ta~~~l   83 (121)
                      ++|.++|||++|+|          ++||+|+++. +|+|+||++++ ++.++++|+++++++   ++++++++.|+|+++
T Consensus        62 ~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~-~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l  140 (334)
T 3qwb_A           62 EKPYVLGREASGTVVAKGKGVTNFEVGDQVAYIS-NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFT  140 (334)
T ss_dssp             CSSEECCSEEEEEEEEECTTCCSCCTTCEEEEEC-SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccceEEEEEEECCCCCCCCCCCEEEEee-CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHH
Confidence            46889999999999          7899999876 59999999999 999999999999999   888999999999999


Q ss_pred             HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+..++++|++|||+||+|++|++++|+++.+|++|++
T Consensus       141 ~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~  178 (334)
T 3qwb_A          141 NEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIA  178 (334)
T ss_dssp             HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEE
T ss_pred             HHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            88889999999999999999999999999999999873

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=2.6e-25  Score=161.43  Aligned_cols=103  Identities=27%  Similarity=0.294  Sum_probs=95.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc--cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV--AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~--~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      .+|.++|||++|+|          ++||+| ++.  .+|+|+||++++++.++++|+++|+++|+++++++.|||+++.+
T Consensus        56 ~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV-~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~  134 (327)
T 1qor_A           56 SLPSGLGTEAAGIVSKVGSGVKHIKAGDRV-VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRK  134 (327)
T ss_dssp             SSSBCCCSCEEEEEEEECTTCCSCCTTCEE-EESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCceeEEEEEEECCCCCCCCCCCEE-EECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHH
Confidence            36889999999998          789999 443  45999999999999999999999999999999999999999977


Q ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ..++++|++|||+||+|++|++++|+++..|++|++
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~  170 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIG  170 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEE
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence            899999999999999999999999999999998863

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.93  E-value=3.3e-25  Score=162.27  Aligned_cols=102  Identities=24%  Similarity=0.258  Sum_probs=92.6

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-------------------------------------cCCceeEEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-------------------------------------AARSLATTV   50 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------------------------~~g~~~~~~   50 (121)
                      .+|.++|||++|+|          ++||+|+...                                     .+|+|+||+
T Consensus        57 ~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~  136 (348)
T 3two_A           57 IYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNI  136 (348)
T ss_dssp             CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEE
T ss_pred             CCCeecCcceeEEEEEECCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceE
Confidence            56899999999998          7899997521                                     129999999


Q ss_pred             EeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          51 LADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        51 ~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +++++.++++|+++++++|+++++++.|||+++ +..++++||+|||+|+ |++|++++|+||.+|++|++
T Consensus       137 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~  205 (348)
T 3two_A          137 VVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSV  205 (348)
T ss_dssp             EEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEE
T ss_pred             EechhhEEECCCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEE
Confidence            999999999999999999999999999999999 4569999999999995 99999999999999999874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.93  E-value=2.2e-25  Score=162.62  Aligned_cols=102  Identities=28%  Similarity=0.340  Sum_probs=93.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||++|+|          ++||+|...                            ..+|+|+||++++++.+++
T Consensus        56 ~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~  135 (340)
T 3s2e_A           56 TLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGL  135 (340)
T ss_dssp             CSSBCCCSEEEEEEEEECSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEE
T ss_pred             CCCcccCCcceEEEEEECCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEE
Confidence            57899999999998          799999431                            2369999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+++++++++++++++.|||+++ +..++++||+|||+|+ |++|++++|+||.+|++|++
T Consensus       136 iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~  195 (340)
T 3s2e_A          136 LPDKVGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGI-GGLGHVAVQYARAMGLRVAA  195 (340)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECC-STTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEE
Confidence            999999999999999999999999 7789999999999995 99999999999999999874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=4.2e-25  Score=162.45  Aligned_cols=103  Identities=22%  Similarity=0.234  Sum_probs=94.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||+|++..                           .+|+|+||++++++.++++
T Consensus        72 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~i  151 (359)
T 1h2b_A           72 KLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKL  151 (359)
T ss_dssp             CSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEEC
T ss_pred             CCCeecCcCceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEEC
Confidence            46889999999998          7999998753                           3599999999999999999


Q ss_pred             CCCCCHHHHh---hcchHHHHHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHHHHHHC-CCEEeC
Q psy3430          61 PAKWTLEEAS---TIPVVYATAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAISIALHM-GCTVYT  121 (121)
Q Consensus        61 p~~~~~~~aa---~l~~~~~ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi~  121 (121)
                      |+++|+++|+   ++++++.|||+++.+. .++++||+|||+|+ |++|++++|+||++ |++|++
T Consensus       152 P~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~  216 (359)
T 1h2b_A          152 PKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIA  216 (359)
T ss_dssp             CTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEE
T ss_pred             CCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEE
Confidence            9999999998   8899999999999665 89999999999997 99999999999999 999873

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.92  E-value=4.4e-25  Score=163.23  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=94.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc---------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA---------------------------------------------   42 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~---------------------------------------------   42 (121)
                      .+|.++|||++|+|          ++||||+....                                             
T Consensus        61 ~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~  140 (378)
T 3uko_A           61 LFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIY  140 (378)
T ss_dssp             CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEB
T ss_pred             CCCccCCccceEEEEEeCCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccc
Confidence            47899999999998          78999986432                                             


Q ss_pred             ----CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-
Q psy3430          43 ----ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-  117 (121)
Q Consensus        43 ----~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-  117 (121)
                          .|+|+||++++++.++++|+++|+++++.+++++.|||+++.+..++++||+|||+|+ |++|++++|+||.+|+ 
T Consensus       141 ~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~  219 (378)
T 3uko_A          141 HFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGAS  219 (378)
T ss_dssp             CCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCS
T ss_pred             cccCCcceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Confidence                1589999999999999999999999999999999999999988999999999999996 9999999999999999 


Q ss_pred             EEeC
Q psy3430         118 TVYT  121 (121)
Q Consensus       118 ~vi~  121 (121)
                      +|++
T Consensus       220 ~Vi~  223 (378)
T 3uko_A          220 RIIG  223 (378)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            7763

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.92  E-value=1.6e-25  Score=163.01  Aligned_cols=104  Identities=30%  Similarity=0.424  Sum_probs=96.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEcc-CCceeEEEEeCCCCeEEcCCCCCHHH--HhhcchHHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLVA-ARSLATTVLADPSFLWEVPAKWTLEE--ASTIPVVYATAYYSLI   84 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~--aa~l~~~~~ta~~~l~   84 (121)
                      .+|.++|||++|+|          ++||+|+.... +|+|+||++++++.++++|+++++++  ++++++++.|||+++.
T Consensus        59 ~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~  138 (333)
T 1wly_A           59 EPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLH  138 (333)
T ss_dssp             -CCEECCCEEEEEEEEECTTCCSCCTTCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccceeEEEEEEECCCCCCCCCCCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHH
Confidence            36889999999998          78999987654 69999999999999999999999999  9999999999999998


Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +..++++|++|+|+||+|++|++++|+++..|++|++
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~  175 (333)
T 1wly_A          139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIG  175 (333)
T ss_dssp             TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEE
Confidence            7899999999999999999999999999999998863

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.92  E-value=3.1e-25  Score=163.03  Aligned_cols=100  Identities=22%  Similarity=0.225  Sum_probs=93.7

Q ss_pred             CccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCC-----------CCCHHHHhhcchHHHH
Q psy3430          21 CVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPA-----------KWTLEEASTIPVVYAT   78 (121)
Q Consensus        21 ~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~-----------~~~~~~aa~l~~~~~t   78 (121)
                      .++|||++|+|          ++||+|++.. .+|+|+||++++++.++++|+           ++++++|+++++++.|
T Consensus        74 ~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~t  153 (364)
T 1gu7_A           74 APCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT  153 (364)
T ss_dssp             EECCSCCEEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHH
T ss_pred             cccCceeEEEEEEeCCCCCcCCCCCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHH
Confidence            79999999998          7899999874 459999999999999999998           8999999999999999


Q ss_pred             HHHHHHhhcCCCCC-CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          79 AYYSLIVRGKMRPG-ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        79 a~~~l~~~~~~~~g-~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ||+++.+..++++| |+|||+||+|++|++++|+||.+|++|+
T Consensus       154 a~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi  196 (364)
T 1gu7_A          154 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSI  196 (364)
T ss_dssp             HHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEE
Confidence            99999777899999 9999999999999999999999999876

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.92  E-value=2.2e-25  Score=162.95  Aligned_cols=104  Identities=32%  Similarity=0.422  Sum_probs=95.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEE-------E--------------------EccCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVM-------G--------------------LVAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~-------~--------------------~~~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||+|+       +                    +..+|+|+||++++++.++++
T Consensus        56 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~  135 (343)
T 2eih_A           56 PLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPK  135 (343)
T ss_dssp             CSSEECCSEEEEEEEEECSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEEC
T ss_pred             CCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEEC
Confidence            46889999999998          7899998       3                    334699999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      |+++++++++++++++.|||+++.+..++++|++|||+|++|++|++++|+++.+|++|++
T Consensus       136 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~  196 (343)
T 2eih_A          136 PKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIA  196 (343)
T ss_dssp             CTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            9999999999999999999999966679999999999999999999999999999998863

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.92  E-value=4.8e-25  Score=159.73  Aligned_cols=104  Identities=22%  Similarity=0.343  Sum_probs=92.8

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.++|||++|+|        ++||||+...      .+|+|+||+++|++.++++|+++++++|++++.++.|||+++
T Consensus        56 ~~p~v~G~E~~G~V~~~Gv~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al  135 (324)
T 3nx4_A           56 HFPMIPGIDFAGTVHASEDPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCV  135 (324)
T ss_dssp             SSSBCCCSEEEEEEEEESSTTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccceeEEEEEEeCCCCCCCCCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHH
Confidence            56899999999999        7899999763      569999999999999999999999999999999999999998


Q ss_pred             H--hhcCCCCCC-EEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          84 I--VRGKMRPGE-SLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        84 ~--~~~~~~~g~-~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .  ...++++++ +|||+||+|++|++++|+||.+|++|++
T Consensus       136 ~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~  176 (324)
T 3nx4_A          136 MALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAA  176 (324)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             HHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEE
Confidence            6  345677643 4999999999999999999999998874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.92  E-value=1.3e-24  Score=160.46  Aligned_cols=103  Identities=23%  Similarity=0.286  Sum_probs=94.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||||+...                                              
T Consensus        60 ~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~  139 (376)
T 1e3i_A           60 LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGR  139 (376)
T ss_dssp             CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTE
T ss_pred             CCCcccCccccEEEEEECCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCc
Confidence            46899999999998          7899998742                                              


Q ss_pred             ------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHC
Q psy3430          42 ------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHM  115 (121)
Q Consensus        42 ------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~  115 (121)
                            .+|+|+||++++++.++++|+++++++|+++++++.|||+++.+..++++||+|||+| +|++|++++|+||.+
T Consensus       140 ~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~  218 (376)
T 1e3i_A          140 SIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIA  218 (376)
T ss_dssp             EEBCCTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHT
T ss_pred             ccccccCCccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc
Confidence                  1389999999999999999999999999999999999999998889999999999999 599999999999999


Q ss_pred             CC-EEeC
Q psy3430         116 GC-TVYT  121 (121)
Q Consensus       116 G~-~vi~  121 (121)
                      |+ +|++
T Consensus       219 Ga~~Vi~  225 (376)
T 1e3i_A          219 GASRIIA  225 (376)
T ss_dssp             TCSEEEE
T ss_pred             CCCeEEE
Confidence            99 7763

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.92  E-value=7.6e-25  Score=161.45  Aligned_cols=104  Identities=25%  Similarity=0.318  Sum_probs=96.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~   84 (121)
                      .+|.++|||++|+|          ++||+|++..   .+|+|+||++++++.++++|+++|+++|++++++++|||+++.
T Consensus        80 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~  159 (363)
T 4dvj_A           80 TDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFF  159 (363)
T ss_dssp             CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHH
T ss_pred             CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHH
Confidence            56889999999998          7899999863   3699999999999999999999999999999999999999998


Q ss_pred             hhcCCC-----CCCEEEEecCCchHHHHHHHHHHH-CCCEEeC
Q psy3430          85 VRGKMR-----PGESLLVHAGAGGLGQAAISIALH-MGCTVYT  121 (121)
Q Consensus        85 ~~~~~~-----~g~~vli~ga~g~vG~~aiqla~~-~G~~vi~  121 (121)
                      +..+++     +|++|||+||+|++|++++|+||. .|++|++
T Consensus       160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~  202 (363)
T 4dvj_A          160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIA  202 (363)
T ss_dssp             TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEE
T ss_pred             HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEE
Confidence            889998     899999999999999999999998 4888874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.92  E-value=1.3e-24  Score=160.32  Aligned_cols=102  Identities=19%  Similarity=0.226  Sum_probs=93.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||||+...                                              
T Consensus        59 ~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~  138 (373)
T 2fzw_A           59 CFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILH  138 (373)
T ss_dssp             CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBC
T ss_pred             CCCccccccccEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccccccccccc
Confidence            46899999999998          7899998752                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                        .+|+|+||++++++.++++|+++|+++|+++++++.|||+++.+..++++||+|||+| +|++|++++|+||.+|+ +
T Consensus       139 ~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~  217 (373)
T 2fzw_A          139 YMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASR  217 (373)
T ss_dssp             CTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSE
T ss_pred             ccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence              1389999999999999999999999999999999999999998889999999999999 59999999999999999 7


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       218 Vi  219 (373)
T 2fzw_A          218 II  219 (373)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.92  E-value=1.4e-24  Score=160.28  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=94.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||||+...                                              
T Consensus        61 ~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~  140 (374)
T 1cdo_A           61 GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQ  140 (374)
T ss_dssp             SCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEE
T ss_pred             CCCcccCccceEEEEEECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCccccc
Confidence            46889999999998          7899998752                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                        .+|+|+||++++++.++++|+++|+++|+++++++.|||+++.+..++++||+|||+| +|++|++++|+||.+|+ +
T Consensus       141 ~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~  219 (374)
T 1cdo_A          141 FLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKR  219 (374)
T ss_dssp             GGGTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSE
T ss_pred             ccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCE
Confidence              1389999999999999999999999999999999999999998889999999999999 59999999999999999 7


Q ss_pred             EeC
Q psy3430         119 VYT  121 (121)
Q Consensus       119 vi~  121 (121)
                      |++
T Consensus       220 Vi~  222 (374)
T 1cdo_A          220 IIA  222 (374)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.92  E-value=1.9e-24  Score=159.55  Aligned_cols=101  Identities=22%  Similarity=0.296  Sum_probs=93.5

Q ss_pred             CCCccCcceEEEE----------ccCCEEEEEc-----------------------------------------------
Q psy3430          19 QDCVLGLEFSGRD----------TKGRRVMGLV-----------------------------------------------   41 (121)
Q Consensus        19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-----------------------------------------------   41 (121)
                      +|.++|||++|+|          ++||||+...                                               
T Consensus        61 ~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~  140 (374)
T 2jhf_A           61 LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHF  140 (374)
T ss_dssp             SSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCS
T ss_pred             CCcccCcCceEEEEEECCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccc
Confidence            6889999999998          7899998642                                               


Q ss_pred             -cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430          42 -AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TV  119 (121)
Q Consensus        42 -~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~v  119 (121)
                       .+|+|+||++++++.++++|+++|+++|+++++++.|||+++.+..++++||+|||+| +|++|++++|+||++|+ +|
T Consensus       141 ~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~V  219 (374)
T 2jhf_A          141 LGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARI  219 (374)
T ss_dssp             TTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEE
T ss_pred             cCCccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeE
Confidence             1389999999999999999999999999999999999999998889999999999999 69999999999999999 77


Q ss_pred             e
Q psy3430         120 Y  120 (121)
Q Consensus       120 i  120 (121)
                      +
T Consensus       220 i  220 (374)
T 2jhf_A          220 I  220 (374)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.92  E-value=6.9e-25  Score=165.20  Aligned_cols=103  Identities=33%  Similarity=0.402  Sum_probs=93.8

Q ss_pred             CC-CccCcceEEEE----------ccCCEEEEEcc---------------------------CCceeEEEEeCCCCeEEc
Q psy3430          19 QD-CVLGLEFSGRD----------TKGRRVMGLVA---------------------------ARSLATTVLADPSFLWEV   60 (121)
Q Consensus        19 ~~-~~~G~e~~G~V----------~~Gd~V~~~~~---------------------------~g~~~~~~~v~~~~~~~~   60 (121)
                      +| .++|||++|+|          ++||+|+....                           +|+|+||++++++.++++
T Consensus       108 ~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~i  187 (447)
T 4a0s_A          108 QPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPK  187 (447)
T ss_dssp             CSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEEC
T ss_pred             CCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEEC
Confidence            45 69999999998          79999987531                           499999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhh--cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      |+++++++|+++++++.|||+++.+.  .++++|++|||+||+|++|++++|+|+.+|++|++
T Consensus       188 P~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~  250 (447)
T 4a0s_A          188 PAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVA  250 (447)
T ss_dssp             CTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence            99999999999999999999999643  89999999999999899999999999999998763

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.92  E-value=1.1e-24  Score=158.19  Aligned_cols=104  Identities=25%  Similarity=0.304  Sum_probs=94.2

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.++|||++|+|        ++||||+...      .+|+|+||++++++.++++|+++|+++|+++++++.|+|.++
T Consensus        59 ~~p~v~G~E~~G~V~~~~v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l  138 (328)
T 1xa0_A           59 TYPFVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSI  138 (328)
T ss_dssp             SSSBCCCSEEEEEEEECCSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCcceEEEEEecCCCCCCCCCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence            46899999999998        7899999763      369999999999999999999999999999999999999887


Q ss_pred             H--hhcCCCCCC-EEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          84 I--VRGKMRPGE-SLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        84 ~--~~~~~~~g~-~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .  +..++++|+ +|||+|++|++|++++|+|+.+|++|++
T Consensus       139 ~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~  179 (328)
T 1xa0_A          139 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEA  179 (328)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEE
Confidence            5  347899997 9999999999999999999999998863

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.92  E-value=2.3e-24  Score=159.01  Aligned_cols=101  Identities=24%  Similarity=0.323  Sum_probs=92.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||||+...                                              
T Consensus        61 ~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~  140 (373)
T 1p0f_A           61 KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYN  140 (373)
T ss_dssp             CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBC
T ss_pred             CCCcccCcCceEEEEEECCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCccccc
Confidence            46899999999998          7899998752                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                        .+|+|+||++++++.++++|++++++ ++++++++.|||+++.+..++++||+|||+| +|++|++++|+||++|+ +
T Consensus       141 ~~~~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~  218 (373)
T 1p0f_A          141 LMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASR  218 (373)
T ss_dssp             STTTCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSE
T ss_pred             ccCCccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence              13899999999999999999999999 9999999999999998889999999999999 59999999999999999 7


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       219 Vi  220 (373)
T 1p0f_A          219 II  220 (373)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.92  E-value=4e-25  Score=176.62  Aligned_cols=101  Identities=43%  Similarity=0.789  Sum_probs=95.6

Q ss_pred             CCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCC
Q psy3430          20 DCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKM   89 (121)
Q Consensus        20 ~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~   89 (121)
                      |.++|||++|+|          ++||||+++.. |+|+||++++++.++++|+++|++++++++++++|+|+++.+.+++
T Consensus       265 ~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~~~-G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l  343 (795)
T 3slk_A          265 VASLGSEGAGVVVETGPGVTGLAPGDRVMGMIP-KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGL  343 (795)
T ss_dssp             CCCSCCCEEEEEEEECSSCCSSCTTCEEEECCS-SCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCC
T ss_pred             CccccceeEEEEEEeCCCCCcCCCCCEEEEEec-CCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            457999999998          79999998764 8999999999999999999999999999999999999999889999


Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++||+|||+||+|++|++++|+||.+|++|++
T Consensus       344 ~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~  375 (795)
T 3slk_A          344 RPGESLLVHSAAGGVGMAAIQLARHLGAEVYA  375 (795)
T ss_dssp             CTTCCEEEESTTBHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcCCEEEE
Confidence            99999999999999999999999999999874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.4e-24  Score=156.85  Aligned_cols=103  Identities=24%  Similarity=0.212  Sum_probs=93.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||++|+|          ++||||+..                            ..+|+|+||++++++.+++
T Consensus        59 ~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~  138 (347)
T 2hcy_A           59 KLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAH  138 (347)
T ss_dssp             CSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEE
T ss_pred             CCCcccCccceEEEEEECCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEE
Confidence            46899999999998          789999852                            1358999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+++++++++++++++.|||+++. ..++++|++|||+|++|++|++++|+++..|++|++
T Consensus       139 iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~  199 (347)
T 2hcy_A          139 IPQGTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLG  199 (347)
T ss_dssp             ECTTCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEE
Confidence            9999999999999999999999995 458999999999999899999999999999998863

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.91  E-value=2.6e-24  Score=158.17  Aligned_cols=102  Identities=25%  Similarity=0.295  Sum_probs=92.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------ccCCceeEEEEe
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------VAARSLATTVLA   52 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------~~~g~~~~~~~v   52 (121)
                      .+|.++|||++|+|          ++||||+..                                   ..+|+|+||+++
T Consensus        62 ~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v  141 (357)
T 2cf5_A           62 NYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVV  141 (357)
T ss_dssp             CSSBCCCCEEEEEEEEECSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEE
T ss_pred             CCCeecCcceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEe
Confidence            46889999999998          789999742                                   146999999999


Q ss_pred             CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      |++.++++|+++|+++++++++++.|||+++. ..+++ +||+|||+| +|++|++++|+||.+|++|++
T Consensus       142 ~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~Vi~  209 (357)
T 2cf5_A          142 HQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILG-LGGVGHMGVKIAKAMGHHVTV  209 (357)
T ss_dssp             EGGGEEECCSSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEE
T ss_pred             chhhEEECcCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEE
Confidence            99999999999999999999999999999994 56888 999999999 699999999999999998863

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.91  E-value=1.3e-24  Score=157.96  Aligned_cols=104  Identities=24%  Similarity=0.336  Sum_probs=94.2

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.++|||++|+|        ++||||+...      .+|+|+||++++++.++++|+++|+++|+++++++.|+|.++
T Consensus        60 ~~p~i~G~E~~G~V~~~~v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l  139 (330)
T 1tt7_A           60 EYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSV  139 (330)
T ss_dssp             SCSEECCSEEEEEEEECSSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccceEEEEEEEcCCCCCCCCCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHH
Confidence            46889999999999        7899999763      469999999999999999999999999999999999999887


Q ss_pred             H--hhcCCCCCC-EEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          84 I--VRGKMRPGE-SLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        84 ~--~~~~~~~g~-~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .  +..++++|+ +|||+||+|++|++++|+|+.+|++|++
T Consensus       140 ~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~  180 (330)
T 1tt7_A          140 HRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVA  180 (330)
T ss_dssp             HHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            5  347899997 9999999999999999999999998763

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.91  E-value=2e-24  Score=158.83  Aligned_cols=99  Identities=22%  Similarity=0.256  Sum_probs=90.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||++|+|          ++||||+...                            .+|+|+||++++++.+++
T Consensus        71 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~  150 (363)
T 3m6i_A           71 ECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHK  150 (363)
T ss_dssp             CSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEE
T ss_pred             CCCcccCcceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEE
Confidence            56899999999999          7899998741                            469999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      +|+ +|+++|+.+ .++.|||+++ +..++++||+|||+|+ |++|++++|+||++|++ |+
T Consensus       151 iP~-~s~~~aa~~-~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi  208 (363)
T 3m6i_A          151 IGN-MSYENGAML-EPLSVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLV  208 (363)
T ss_dssp             CTT-CCHHHHHHH-HHHHHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEE
T ss_pred             CCC-CCHHHHHhh-hHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEE
Confidence            999 999999877 5889999999 8899999999999996 99999999999999997 65

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.91  E-value=1.2e-24  Score=159.46  Aligned_cols=102  Identities=23%  Similarity=0.353  Sum_probs=92.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE------------------------------ccCCceeEEEEeCCC--
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL------------------------------VAARSLATTVLADPS--   55 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~------------------------------~~~g~~~~~~~v~~~--   55 (121)
                      .+|.++|||++|+|          ++||||+..                              ..+|+|+||+++++.  
T Consensus        52 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~  131 (352)
T 3fpc_A           52 RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADM  131 (352)
T ss_dssp             CSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHH
T ss_pred             CCCcccCCcceEEEEEECCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccC
Confidence            46889999999999          789999863                              146999999999986  


Q ss_pred             CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      .++++|+++++++++.++.++.|||+++ +..++++||+|||+| +|++|++++|+||++|+ +|++
T Consensus       132 ~~~~iP~~~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~  196 (352)
T 3fpc_A          132 NLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIFA  196 (352)
T ss_dssp             HCEECCTTSCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEEE
T ss_pred             eEEECCCCCCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEE
Confidence            8999999999999999999999999999 889999999999998 69999999999999999 6763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=2.1e-24  Score=159.42  Aligned_cols=102  Identities=24%  Similarity=0.287  Sum_probs=92.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE------------------------------------ccCCceeEEEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL------------------------------------VAARSLATTVL   51 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~------------------------------------~~~g~~~~~~~   51 (121)
                      .+|.++|||++|+|          ++||||+..                                    ..+|+|+||++
T Consensus        75 ~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~  154 (369)
T 1uuf_A           75 VYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIV  154 (369)
T ss_dssp             CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEE
T ss_pred             CCCeecccCceEEEEEECCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEE
Confidence            46889999999998          789999852                                    23589999999


Q ss_pred             eCCCCeEEcCCC-CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          52 ADPSFLWEVPAK-WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        52 v~~~~~~~~p~~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++.++++|++ +|+++++++++++.|||+++.+ .++++||+|||+|+ |++|++++|+|+.+|++|++
T Consensus       155 v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~  223 (369)
T 1uuf_A          155 VHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVA  223 (369)
T ss_dssp             EEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEE
T ss_pred             EcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEE
Confidence            999999999999 9999999999999999999954 68999999999995 99999999999999999763

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.91  E-value=3.4e-24  Score=156.49  Aligned_cols=102  Identities=28%  Similarity=0.322  Sum_probs=92.7

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||++|+|          ++||+|+..                            ..+|+|+||++++++.+++
T Consensus        54 ~~p~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~  133 (339)
T 1rjw_A           54 KLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVK  133 (339)
T ss_dssp             CSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEE
T ss_pred             CCCeeccccceEEEEEECCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEE
Confidence            46899999999998          789999852                            1358999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+++|+++++++++++.|||+++.+. ++++|++|||+|+ |++|++++|+|+.+|++|++
T Consensus       134 ~P~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~  193 (339)
T 1rjw_A          134 IPDNLSFEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVA  193 (339)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHHH-TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEE
Confidence            999999999999999999999999554 8999999999997 88999999999999998863

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.91  E-value=1.6e-24  Score=163.82  Aligned_cols=104  Identities=29%  Similarity=0.422  Sum_probs=94.0

Q ss_pred             CCC-CccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEE
Q psy3430          18 GQD-CVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~-~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      .+| .++|||++|+|          ++||+|+...                           .+|+|+||++++++.+++
T Consensus       115 ~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~  194 (456)
T 3krt_A          115 DLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMP  194 (456)
T ss_dssp             CCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEE
T ss_pred             CCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeE
Confidence            345 69999999999          7899998742                           149999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhh--cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+++++++|+++++++.|||+++.+.  .++++||+|||+||+|++|++++|+|+.+|++|++
T Consensus       195 ~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~  258 (456)
T 3krt_A          195 KPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPIC  258 (456)
T ss_dssp             CCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEE
Confidence            999999999999999999999999654  78999999999998899999999999999998763

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.91  E-value=3.5e-24  Score=157.49  Aligned_cols=102  Identities=25%  Similarity=0.309  Sum_probs=92.0

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEEE-----------------------------------ccCCceeEEEE
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMGL-----------------------------------VAARSLATTVL   51 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~-----------------------------------~~~g~~~~~~~   51 (121)
                      .+|.++|||++|+|           ++||||...                                   ..+|+|+||++
T Consensus        61 ~~p~v~GhE~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~  140 (360)
T 1piw_A           61 KMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVR  140 (360)
T ss_dssp             CSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEE
T ss_pred             CCCcccCcCceEEEEEeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEE
Confidence            46889999999998           479999421                                   23589999999


Q ss_pred             eCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          52 ADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        52 v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++.++++|+++++++|+++++++.|||+++.+ .++++|++|||+|+ |++|++++|+||.+|++|++
T Consensus       141 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~  208 (360)
T 1piw_A          141 VHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYV  208 (360)
T ss_dssp             EEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEE
T ss_pred             EchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEE
Confidence            9999999999999999999999999999999954 89999999999997 99999999999999999863

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.91  E-value=3.1e-24  Score=158.51  Aligned_cols=100  Identities=22%  Similarity=0.300  Sum_probs=91.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE---------------------------ccCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL---------------------------VAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~---------------------------~~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||+|++.                           ..+|+|+||++++++.++++
T Consensus        74 ~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~  153 (370)
T 4ej6_A           74 TPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEI  153 (370)
T ss_dssp             CSSEECCCSEEEEEEEECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEE
T ss_pred             CCCeecCcceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEEC
Confidence            46889999999998          789999863                           24699999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      |+++++++|+ +..++.|+|+++ +..++++|++|||+|+ |++|++++|+|+++|+ +|+
T Consensus       154 P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi  211 (370)
T 4ej6_A          154 PLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVI  211 (370)
T ss_dssp             CTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEE
Confidence            9999999986 778999999999 8899999999999995 9999999999999999 776

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=4.5e-24  Score=157.37  Aligned_cols=102  Identities=25%  Similarity=0.197  Sum_probs=93.4

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+...                                              
T Consensus        58 ~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~  137 (371)
T 1f8f_A           58 PLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVND  137 (371)
T ss_dssp             CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBC
T ss_pred             CCCcccCcccceEEEEeCCCCCCCCCCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccc
Confidence            36899999999998          7899998621                                              


Q ss_pred             ---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-
Q psy3430          42 ---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-  117 (121)
Q Consensus        42 ---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-  117 (121)
                         .+|+|+||++++++.++++|+++++++|+++++++.|||+++.+..++++||+|||+| +|++|++++|+||.+|+ 
T Consensus       138 ~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~  216 (371)
T 1f8f_A          138 HFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGAS  216 (371)
T ss_dssp             CGGGTCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCS
T ss_pred             cccCCccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence               2489999999999999999999999999999999999999998889999999999999 69999999999999999 


Q ss_pred             EEe
Q psy3430         118 TVY  120 (121)
Q Consensus       118 ~vi  120 (121)
                      +|+
T Consensus       217 ~Vi  219 (371)
T 1f8f_A          217 III  219 (371)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            675

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=6.1e-24  Score=155.73  Aligned_cols=100  Identities=25%  Similarity=0.308  Sum_probs=90.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||++|+|          ++||+|++..                            .+|+|+||++++++.+++
T Consensus        59 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~  138 (352)
T 1e3j_A           59 KDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHK  138 (352)
T ss_dssp             CSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEE
T ss_pred             CCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEE
Confidence            46889999999999          7899998742                            369999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+++|+++|+.+ .++.|||+++ +..++++||+|||+|+ |++|++++|+|+.+|++|+
T Consensus       139 iP~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi  196 (352)
T 1e3j_A          139 LPDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVV  196 (352)
T ss_dssp             CCTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEE
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEE
Confidence            9999999998755 6889999999 7889999999999995 9999999999999999876

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.91  E-value=2e-24  Score=158.17  Aligned_cols=102  Identities=22%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.++|||++|+|           ++||+|++..   .+|+|+||++++++.++++|+++++++|+++++.++|||+++
T Consensus        78 ~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~  157 (349)
T 3pi7_A           78 VKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF  157 (349)
T ss_dssp             CTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH
T ss_pred             CCCCCccceEEEEEEEECCCccCCCCCCCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHH
Confidence            57899999999998           5799999875   579999999999999999999999999999999999999766


Q ss_pred             HhhcCCCCC-CEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          84 IVRGKMRPG-ESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        84 ~~~~~~~~g-~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                       +..+ ++| ++|+|+||+|++|++++|+|+.+|++|++
T Consensus       158 -~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~  194 (349)
T 3pi7_A          158 -DIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIV  194 (349)
T ss_dssp             -HHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             -HHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence             5556 666 79999999999999999999999999874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.91  E-value=7e-24  Score=156.35  Aligned_cols=102  Identities=22%  Similarity=0.306  Sum_probs=92.0

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------ccCCceeEEEEe
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------VAARSLATTVLA   52 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------~~~g~~~~~~~v   52 (121)
                      .+|.++|||++|+|          ++||+|+..                                   ..+|+|+||+++
T Consensus        69 ~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v  148 (366)
T 1yqd_A           69 MYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVA  148 (366)
T ss_dssp             CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEE
T ss_pred             CCCEecccceEEEEEEECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEE
Confidence            46889999999998          789999742                                   145999999999


Q ss_pred             CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +++.++++|+++|+++++++++++.|||+++. ..+++ +|++|||+| +|++|++++|+|+.+|++|++
T Consensus       149 ~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~G-aG~vG~~~~q~a~~~Ga~Vi~  216 (366)
T 1yqd_A          149 NERYIIRFPDNMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVG-LGGLGHVAVKFAKAFGSKVTV  216 (366)
T ss_dssp             EGGGCEECCTTSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             chhhEEECCCCCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            99999999999999999999999999999994 56788 999999999 599999999999999998863

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.91  E-value=9.1e-24  Score=155.10  Aligned_cols=101  Identities=28%  Similarity=0.358  Sum_probs=91.0

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      .+|.++|||++|+|          ++||||+...                            .+|+|+||++++++.+++
T Consensus        62 ~~p~v~G~E~~G~V~~vG~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~  141 (356)
T 1pl8_A           62 KKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYK  141 (356)
T ss_dssp             SSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEE
T ss_pred             CCCcccccceEEEEEEECCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEE
Confidence            46889999999998          7899998741                            369999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      +|+++|+++|+.+ .++.|||+++ +..++++||+|||+| +|++|++++|+||.+|+ +|++
T Consensus       142 iP~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~  201 (356)
T 1pl8_A          142 LPDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVV  201 (356)
T ss_dssp             CCTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEE
Confidence            9999999998755 6889999999 788999999999999 59999999999999999 7763

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.91  E-value=1.2e-23  Score=153.05  Aligned_cols=100  Identities=24%  Similarity=0.354  Sum_probs=91.7

Q ss_pred             CCCccCcc----eEEEE--------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHH--hhcchHHHHHHHHHH
Q psy3430          19 QDCVLGLE----FSGRD--------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEA--STIPVVYATAYYSLI   84 (121)
Q Consensus        19 ~~~~~G~e----~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a--a~l~~~~~ta~~~l~   84 (121)
                      +|.++|||    ++|+|        ++||||++.   |+|+||++++++.++++|+++++.++  +++++++.|||+++.
T Consensus        66 ~p~~~G~e~g~~~~G~V~~~~v~~~~vGdrV~~~---G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~  142 (336)
T 4b7c_A           66 PPVGIGEVMRALGVGKVLVSKHPGFQAGDYVNGA---LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALL  142 (336)
T ss_dssp             CCCCTTSBCCCEEEEEEEEECSTTCCTTCEEEEE---CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHH
T ss_pred             CCCCCCcccCCceEEEEEecCCCCCCCCCEEecc---CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHH
Confidence            46677777    79998        799999975   89999999999999999999977776  789999999999998


Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +..++++|++|||+|++|++|++++|+++..|++|++
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~  179 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVG  179 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            8999999999999999999999999999999999873

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.91  E-value=7e-24  Score=154.93  Aligned_cols=101  Identities=22%  Similarity=0.295  Sum_probs=91.0

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE---------------------------ccCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL---------------------------VAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~---------------------------~~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||||++.                           ..+|+|+||++++++.++++
T Consensus        56 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i  135 (343)
T 2dq4_A           56 RPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVN  135 (343)
T ss_dssp             CSSEECCCEEEEEEEEECTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEE
T ss_pred             CCCCcCCccceEEEEEECCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEEC
Confidence            46889999999998          789999874                           24699999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      |+++|+++|+.+ .++.|+|+++.+..++ +|++|||+|+ |++|++++|+|+.+|+ +|++
T Consensus       136 P~~~~~~~aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~  194 (343)
T 2dq4_A          136 PKDLPFEVAAIL-EPFGNAVHTVYAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILV  194 (343)
T ss_dssp             CTTSCHHHHTTH-HHHHHHHHHHHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCCHHHHHhh-hHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEE
Confidence            999999999876 5788999999658889 9999999998 9999999999999999 8863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.90  E-value=9.8e-24  Score=154.18  Aligned_cols=103  Identities=23%  Similarity=0.243  Sum_probs=92.5

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc--------------------------------cCCceeEEEEeC-
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV--------------------------------AARSLATTVLAD-   53 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~--------------------------------~~g~~~~~~~v~-   53 (121)
                      ..+|.++|||++|+|          ++||+|++..                                .+|+|+||++++ 
T Consensus        54 ~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~  133 (345)
T 3jv7_A           54 YGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDS  133 (345)
T ss_dssp             SCSSEECCSEEEEEEEEECTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESC
T ss_pred             CCCCcccCcccEEEEEEECCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecc
Confidence            357899999999999          7899998742                                369999999999 


Q ss_pred             CCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh-hcCCCCCCEEEEecCCchHHHHHHHHHHHC-CCEEeC
Q psy3430          54 PSFLWEVPAKWTLEEASTIPVVYATAYYSLIV-RGKMRPGESLLVHAGAGGLGQAAISIALHM-GCTVYT  121 (121)
Q Consensus        54 ~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi~  121 (121)
                      ++.++++|+ +++++++++++++.|||+++.+ ..++++||+|+|+|+ |++|++++|+||++ +++|++
T Consensus       134 ~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~  201 (345)
T 3jv7_A          134 ARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIA  201 (345)
T ss_dssp             GGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEE
T ss_pred             hhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEE
Confidence            899999999 9999999999999999999976 458999999999995 99999999999999 668763

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.90  E-value=1e-23  Score=154.35  Aligned_cols=100  Identities=22%  Similarity=0.314  Sum_probs=90.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||||++..                           .+|+|+||++++++.++++
T Consensus        60 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i  139 (348)
T 2d8a_A           60 KPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKN  139 (348)
T ss_dssp             CSSEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEEC
T ss_pred             CCCCccCccceEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEEC
Confidence            46889999999998          7899998752                           3599999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      |+++|+++|+.+. ++.|||+++ +..++ +|++|||+|+ |++|++++|+|+.+|+ +|++
T Consensus       140 P~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~  197 (348)
T 2d8a_A          140 PKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIV  197 (348)
T ss_dssp             CTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEE
Confidence            9999999998774 888999999 78889 9999999997 9999999999999999 8763

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.90  E-value=3.2e-23  Score=151.61  Aligned_cols=102  Identities=25%  Similarity=0.397  Sum_probs=93.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCC-CCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADP-SFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~-~~~~~   59 (121)
                      .+|.++|||++|+|          ++||+|++..                           .+|+|+||+++|+ +.+++
T Consensus        61 ~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~  140 (347)
T 1jvb_A           61 KLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYK  140 (347)
T ss_dssp             CSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEE
T ss_pred             CCCccccccceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEE
Confidence            46889999999998          7899997642                           3589999999999 99999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHC-CCEEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHM-GCTVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi~  121 (121)
                      + +++++++++++++++.|||+++ +..++++|++|||+|++|++|++++|+++.. |++|++
T Consensus       141 i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~  201 (347)
T 1jvb_A          141 L-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIG  201 (347)
T ss_dssp             C-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEE
T ss_pred             e-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEE
Confidence            9 9999999999999999999999 5589999999999998889999999999999 999863

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.90  E-value=3.6e-23  Score=151.24  Aligned_cols=101  Identities=20%  Similarity=0.234  Sum_probs=91.6

Q ss_pred             CCCCccCcceEEEE---------ccCCEEEEEc---------------------------cCCceeEEEEeC-CCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD---------TKGRRVMGLV---------------------------AARSLATTVLAD-PSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V---------~~Gd~V~~~~---------------------------~~g~~~~~~~v~-~~~~~~~   60 (121)
                      .+|.++|||++|+|         ++||||++..                           .+|+|+||++++ ++.++++
T Consensus        58 ~~p~i~G~E~~G~V~~vG~~~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i  137 (344)
T 2h6e_A           58 RLPIILGHENAGTIVEVGELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL  137 (344)
T ss_dssp             CSSEECCCCEEEEEEEECTTCCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE
T ss_pred             CCCccccccceEEEEEECCCCCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe
Confidence            46889999999998         6899998753                           369999999999 9999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhh----cCCCCCCEEEEecCCchHHHHHHHHHHHC--CCEEeC
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVR----GKMRPGESLLVHAGAGGLGQAAISIALHM--GCTVYT  121 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~----~~~~~g~~vli~ga~g~vG~~aiqla~~~--G~~vi~  121 (121)
                       +++|+++++++++++.|||+++.+.    .++ +||+|||+|+ |++|++++|+||.+  |++|++
T Consensus       138 -~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~  201 (344)
T 2h6e_A          138 -NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVG  201 (344)
T ss_dssp             -SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEE
T ss_pred             -CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEE
Confidence             9999999999999999999999655    388 9999999997 99999999999999  999863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.90  E-value=1.2e-23  Score=156.61  Aligned_cols=102  Identities=25%  Similarity=0.277  Sum_probs=92.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc--------------------------------------cCCceeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV--------------------------------------AARSLATT   49 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~--------------------------------------~~g~~~~~   49 (121)
                      .+|.++|||++|+|          ++||||+...                                      .+|+|+||
T Consensus        59 ~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey  138 (398)
T 2dph_A           59 PKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEY  138 (398)
T ss_dssp             CTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSE
T ss_pred             CCCcccCCceEEEEEEECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeee
Confidence            46889999999998          7899998631                                      25899999


Q ss_pred             EEeCCC--CeEEcCCCCCHHH----HhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          50 VLADPS--FLWEVPAKWTLEE----ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        50 ~~v~~~--~~~~~p~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      ++++++  .++++|+++++++    ++++++++.|||+++ +..++++||+|||+| +|++|++++|+||.+|+ +|++
T Consensus       139 ~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~  215 (398)
T 2dph_A          139 VLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVIV  215 (398)
T ss_dssp             EEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEE
T ss_pred             EEeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEE
Confidence            999987  8999999999998    899999999999999 789999999999999 59999999999999999 8863

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.90  E-value=1.2e-23  Score=182.03  Aligned_cols=119  Identities=63%  Similarity=1.157  Sum_probs=105.2

Q ss_pred             cCCCCCCCCCCCCCCCCCCccCcceEEEEccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHH
Q psy3430           3 ASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYS   82 (121)
Q Consensus         3 ~~g~~~~~~~~~~~~~~~~~~G~e~~G~V~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~   82 (121)
                      +.|.++....+......|+++|+|++|+|++||+|+++..+|+|+||++++++.++++|+++++++|+++++++.|||++
T Consensus      1579 ~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~vGdrV~g~~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~a 1658 (2512)
T 2vz8_A         1579 ATGKLSPDSIPGKWLTRDCMLGMEFSGRDASGRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYS 1658 (2512)
T ss_dssp             HHTSSCGGGCCSCCSCSSSCCCCEEEEEETTSCCEEEECSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHH
T ss_pred             HhCCCccccccccccccCCceEEEEEEEEccCCEEEEeecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHH
Confidence            34555543333323345789999999999999999999888999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          83 LIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        83 l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +.+.+++++||+|||+||+|++|++++|+||.+|++|++
T Consensus      1659 l~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Via 1697 (2512)
T 2vz8_A         1659 LVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFT 1697 (2512)
T ss_dssp             HTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEE
Confidence            988899999999999999999999999999999999874

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.90  E-value=3.9e-23  Score=150.81  Aligned_cols=102  Identities=28%  Similarity=0.358  Sum_probs=91.3

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      ++|.++|||++|+|          ++||||+...                            .+|+|+||++++++.+++
T Consensus        53 ~~p~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~  132 (348)
T 4eez_A           53 KAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVK  132 (348)
T ss_dssp             CTTCBCCSEEEEEEEEECTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCB
T ss_pred             CCCcccceeEEEEEEEECceeeecccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceee
Confidence            46899999999998          7899997531                            258999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHC-CCEEeC
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHM-GCTVYT  121 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi~  121 (121)
                      +|+++++++++++++++.|+|+++ +..++++||+|||+| +|++|.+++|+++.+ |++|++
T Consensus       133 iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi~  193 (348)
T 4eez_A          133 VPDGLDPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIA  193 (348)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEEE
T ss_pred             cCCCCCHHHHhhcccceeeEEeee-cccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEEE
Confidence            999999999999999999999999 678899999999998 689999999999876 668873

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.89  E-value=1e-23  Score=156.15  Aligned_cols=101  Identities=22%  Similarity=0.149  Sum_probs=91.8

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      .+|.++|||++|+|           ++||+|++.. +|+|+||++++++.++++|+++++++|+++++.+.|||+++. .
T Consensus        89 ~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~-~  166 (379)
T 3iup_A           89 DASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVE-T  166 (379)
T ss_dssp             TEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHH-H
T ss_pred             CCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHH-H
Confidence            46889999999998           6799999865 499999999999999999999999999999999999998874 4


Q ss_pred             cCCCCCCEEEEec-CCchHHHHHHHHHHHCCCEEeC
Q psy3430          87 GKMRPGESLLVHA-GAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        87 ~~~~~g~~vli~g-a~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+ ++|++|||+| ++|++|++++|+||.+|++|++
T Consensus       167 ~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~  201 (379)
T 3iup_A          167 MR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVN  201 (379)
T ss_dssp             HH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEE
T ss_pred             hc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence            44 8999999996 7999999999999999998873

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.89  E-value=5.3e-23  Score=151.45  Aligned_cols=101  Identities=32%  Similarity=0.365  Sum_probs=91.9

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      .+|.++|||++|+|           ++||+|++.. +|+|+||++++++.++++|+. + .++++++.++.|||+++.+.
T Consensus        82 ~~P~i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~~-~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~  158 (362)
T 2c0c_A           82 KPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMA-PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKEL  158 (362)
T ss_dssp             CSCEECCSEEEEEEEEECTTGGGTCCTTCEEEEEC-SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHH
T ss_pred             CCCCCCCceeEEEEEEECCCccCCCCCCCEEEEcc-CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHh
Confidence            46889999999998           4799999875 499999999999999999996 4 46778999999999999888


Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +++++|++|||+||+|++|++++|+|+.+|++|++
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~  193 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIG  193 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEE
Confidence            99999999999999999999999999999999873

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.89  E-value=4.3e-23  Score=153.36  Aligned_cols=101  Identities=27%  Similarity=0.286  Sum_probs=90.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-------------------------------------ccCCceeEEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-------------------------------------VAARSLATTV   50 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-------------------------------------~~~g~~~~~~   50 (121)
                      .+|.++|||++|+|          ++||||+..                                     ..+|+|+||+
T Consensus        60 ~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~  139 (398)
T 1kol_A           60 QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYV  139 (398)
T ss_dssp             CTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEE
T ss_pred             CCCcccCcccEEEEEEECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEE
Confidence            36789999999998          789999741                                     1248999999


Q ss_pred             EeCCC--CeEEcCCCCCHHH----HhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          51 LADPS--FLWEVPAKWTLEE----ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        51 ~v~~~--~~~~~p~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +++++  .++++|+++++++    ++++++++.|||+++ +..++++||+|||+| +|++|++++|+||++|+ +|+
T Consensus       140 ~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~Vi  214 (398)
T 1kol_A          140 LVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVI  214 (398)
T ss_dssp             EESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             EecchhCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeEE
Confidence            99986  8999999999988    789999999999999 578999999999999 69999999999999999 675

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=3.5e-22  Score=147.90  Aligned_cols=101  Identities=23%  Similarity=0.243  Sum_probs=89.0

Q ss_pred             CCCCccCcceEEEE---------------ccCCEEEEE------------------------------------ccCCce
Q psy3430          18 GQDCVLGLEFSGRD---------------TKGRRVMGL------------------------------------VAARSL   46 (121)
Q Consensus        18 ~~~~~~G~e~~G~V---------------~~Gd~V~~~------------------------------------~~~g~~   46 (121)
                      .+|.++|||++|+|               ++||+|++.                                    ..+|+|
T Consensus        70 ~~P~v~GhE~~G~V~~vG~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~  149 (380)
T 1vj0_A           70 PLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCY  149 (380)
T ss_dssp             CSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSS
T ss_pred             CCCcccCcCcEEEEEEeCCccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccc
Confidence            46889999999987               379999874                                    125999


Q ss_pred             eEEEEe-CCCCeEEcCCCCCHH-HHhhcchHHHHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          47 ATTVLA-DPSFLWEVPAKWTLE-EASTIPVVYATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        47 ~~~~~v-~~~~~~~~p~~~~~~-~aa~l~~~~~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      +||+++ +++.++++|+++|++ +|+.+. ++.|||+++ +..+ +++|++|||+| +|++|++++|+||.+|+ +|++
T Consensus       150 aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~  225 (380)
T 1vj0_A          150 SSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIV  225 (380)
T ss_dssp             BSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEE
T ss_pred             cceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEE
Confidence            999999 999999999999999 555555 999999999 6778 99999999999 89999999999999994 8874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.88  E-value=3.1e-22  Score=145.50  Aligned_cols=101  Identities=27%  Similarity=0.310  Sum_probs=91.3

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCC----CCHHH-HhhcchHHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLVAARSLATTVLADPSFLWEVPAK----WTLEE-ASTIPVVYATAYYSLI   84 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~----~~~~~-aa~l~~~~~ta~~~l~   84 (121)
                      .+|.++|||++|+|        ++||||++.   |+|+||++++++.++++|++    +++++ ++++++++.|||+++.
T Consensus        62 ~~p~~~g~e~~G~Vv~~~v~~~~vGdrV~~~---g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~  138 (333)
T 1v3u_A           62 KEGAVMMGQQVARVVESKNSAFPAGSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLL  138 (333)
T ss_dssp             CTTSBCCCCEEEEEEEESCTTSCTTCEEEEC---CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHH
T ss_pred             CCCcccccceEEEEEecCCCCCCCCCEEEec---CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHH
Confidence            35778999999988        789999885   88999999999999999997    88887 5899999999999998


Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +..++++|++|||+|++|++|++++|+++..|++|++
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~  175 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVG  175 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEE
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEE
Confidence            8899999999999999999999999999999998863

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.88  E-value=7.4e-23  Score=150.13  Aligned_cols=101  Identities=24%  Similarity=0.259  Sum_probs=92.8

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCC-----CHHHHhhcchHHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKW-----TLEEASTIPVVYATAYYSLI   84 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~-----~~~~aa~l~~~~~ta~~~l~   84 (121)
                      .+|.++|||++|+|        ++||||++..  |+|+||++++++.++++|+++     +++ ++++++++.|||+++.
T Consensus        75 ~~p~v~G~E~~G~V~~~~v~~~~vGdrV~~~~--G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~  151 (357)
T 2zb4_A           75 QLSQVVDGGGIGIIEESKHTNLTKGDFVTSFY--WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQ  151 (357)
T ss_dssp             CBTSBCEEEEEEEEEEECSTTCCTTCEEEEEE--EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHH
T ss_pred             CCCccccccEEEEEEecCCCCCCCCCEEEecC--CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHH
Confidence            46789999999998        7899999874  789999999999999999998     555 7789999999999998


Q ss_pred             hhcCCCCC--CEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          85 VRGKMRPG--ESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        85 ~~~~~~~g--~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      +..++++|  ++|||+|++|++|++++|+++..|+ +|++
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~  191 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVG  191 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEE
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEE
Confidence            88999999  9999999999999999999999999 8863

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.88  E-value=1.4e-22  Score=151.11  Aligned_cols=104  Identities=32%  Similarity=0.482  Sum_probs=91.2

Q ss_pred             CCCCCccCcceEEEE----------------ccCCEEEEE---------------------------ccCCceeEEEEeC
Q psy3430          17 AGQDCVLGLEFSGRD----------------TKGRRVMGL---------------------------VAARSLATTVLAD   53 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------------~~Gd~V~~~---------------------------~~~g~~~~~~~v~   53 (121)
                      ..+|.++|||++|+|                ++||+|++.                           ..+|+|+||++++
T Consensus        89 ~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~  168 (404)
T 3ip1_A           89 TGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVD  168 (404)
T ss_dssp             BCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEE
T ss_pred             CCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEec
Confidence            357899999999998                469999873                           2469999999999


Q ss_pred             CCCeEEcCCCCC------HHHHhhcchHHHHHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          54 PSFLWEVPAKWT------LEEASTIPVVYATAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        54 ~~~~~~~p~~~~------~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      ++.++++|++++      +.++++++.++.|||+++... +++++||+|||+|+ |++|++++|+||.+|+ +|++
T Consensus       169 ~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~  243 (404)
T 3ip1_A          169 AKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVIL  243 (404)
T ss_dssp             GGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEE
T ss_pred             hHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEE
Confidence            999999999875      566889999999999999655 48999999999996 9999999999999999 7763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.88  E-value=3.6e-22  Score=145.65  Aligned_cols=100  Identities=19%  Similarity=0.272  Sum_probs=86.1

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWE   59 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~   59 (121)
                      ..+|.++|||++|+|          ++||+|....                           .+|+|+||++++++.+++
T Consensus        51 ~~~P~i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~  130 (346)
T 4a2c_A           51 HYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFA  130 (346)
T ss_dssp             SSSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEE
T ss_pred             CCCCccccEEEEEEEEEECCCcccccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEE
Confidence            357899999999999          7899997632                           358999999999999999


Q ss_pred             cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                      +|+++|+++++.+. .+.++++++ +..++++|++|+|+| +|++|++++|+||++|+++
T Consensus       131 iP~~l~~~~aa~l~-~~~~~~~~~-~~~~~~~g~~VlV~G-aG~vG~~aiq~ak~~G~~~  187 (346)
T 4a2c_A          131 LPTDMPIEDGAFIE-PITVGLHAF-HLAQGCENKNVIIIG-AGTIGLLAIQCAVALGAKS  187 (346)
T ss_dssp             CCTTSCGGGGGGHH-HHHHHHHHH-HHTTCCTTSEEEEEC-CSHHHHHHHHHHHHTTCSE
T ss_pred             CCCCCCHHHHHhch-HHHHHHHHH-HHhccCCCCEEEEEC-CCCcchHHHHHHHHcCCcE
Confidence            99999999998664 445555555 889999999999998 5999999999999999864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.87  E-value=2.7e-22  Score=147.73  Aligned_cols=99  Identities=20%  Similarity=0.223  Sum_probs=89.3

Q ss_pred             CCccCcceEEEE-------ccCCEEEEEc------------------------------cCCceeEEEEeCCCCeEEcCC
Q psy3430          20 DCVLGLEFSGRD-------TKGRRVMGLV------------------------------AARSLATTVLADPSFLWEVPA   62 (121)
Q Consensus        20 ~~~~G~e~~G~V-------~~Gd~V~~~~------------------------------~~g~~~~~~~v~~~~~~~~p~   62 (121)
                      |.++|||++|+|       ++||||++..                              .+|+|+||++++++.++++|+
T Consensus        61 p~v~G~E~~G~V~~~~~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~  140 (366)
T 2cdc_A           61 FLVLGHEAIGVVEESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPK  140 (366)
T ss_dssp             CEECCSEEEEEECSCCSSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECG
T ss_pred             CCcCCcceEEEEEeCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcC
Confidence            889999999998       6899998631                              469999999999999999999


Q ss_pred             CCCHHHHhhcchHHHHHHHHHH--h--hcCCC--C-------CCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          63 KWTLEEASTIPVVYATAYYSLI--V--RGKMR--P-------GESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        63 ~~~~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +++ ++| +++.++.|||+++.  +  ..+++  +       |++|||+|+ |++|++++|+++.+|++|++
T Consensus       141 ~l~-~~A-al~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~  209 (366)
T 2cdc_A          141 SIE-DIG-ILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWM  209 (366)
T ss_dssp             GGT-TTG-GGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEE
T ss_pred             Ccc-hhh-hhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEE
Confidence            999 776 58889999999996  4  78898  8       999999998 99999999999999998873

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.87  E-value=9.8e-23  Score=149.65  Aligned_cols=97  Identities=20%  Similarity=0.200  Sum_probs=87.3

Q ss_pred             CCccCcceEEEE---------ccCCEEEEE--------------------------------ccCCceeEEEEeCCCCeE
Q psy3430          20 DCVLGLEFSGRD---------TKGRRVMGL--------------------------------VAARSLATTVLADPSFLW   58 (121)
Q Consensus        20 ~~~~G~e~~G~V---------~~Gd~V~~~--------------------------------~~~g~~~~~~~v~~~~~~   58 (121)
                      |.++|||++| |         ++||||++.                                ..+|+|+||++++++.++
T Consensus        58 p~v~G~E~~G-V~~vG~~~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~  136 (357)
T 2b5w_A           58 HLVLGHEAVG-VVVDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLV  136 (357)
T ss_dssp             EEECCSEEEE-EEEECTTSSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEE
T ss_pred             CcccCceeEE-EEEECCCCCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeE
Confidence            8899999999 7         589999875                                125999999999999999


Q ss_pred             EcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCC------CEEEEecCCchHHHHH-HHHH-HHCCCE-EeC
Q psy3430          59 EVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPG------ESLLVHAGAGGLGQAA-ISIA-LHMGCT-VYT  121 (121)
Q Consensus        59 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g------~~vli~ga~g~vG~~a-iqla-~~~G~~-vi~  121 (121)
                      ++|++++ + +++++.++.|||+++ +..++++|      ++|||+|+ |++|+++ +|+| |++|++ |++
T Consensus       137 ~iP~~~~-~-~aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~  204 (357)
T 2b5w_A          137 RIPRSQA-E-LGFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYC  204 (357)
T ss_dssp             ECCGGGS-T-TGGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEE
T ss_pred             ECCCCcc-h-hhhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEE
Confidence            9999999 5 557889999999999 77889999      99999997 9999999 9999 999996 763

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.86  E-value=2e-21  Score=141.73  Aligned_cols=99  Identities=22%  Similarity=0.304  Sum_probs=88.1

Q ss_pred             CCCccCcceEEEE------------ccCCEEEEEccCCceeEEEEeCCCC--eEEcCC---CCCHHHHhhcchHHHHHHH
Q psy3430          19 QDCVLGLEFSGRD------------TKGRRVMGLVAARSLATTVLADPSF--LWEVPA---KWTLEEASTIPVVYATAYY   81 (121)
Q Consensus        19 ~~~~~G~e~~G~V------------~~Gd~V~~~~~~g~~~~~~~v~~~~--~~~~p~---~~~~~~aa~l~~~~~ta~~   81 (121)
                      +|.++|||.+|++            ++||||++.   |+|+||++++++.  ++++|+   .++++ ++++++++.|||+
T Consensus        70 ~p~v~G~e~~G~~~~GvV~~~v~~~~vGdrV~~~---g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~  145 (345)
T 2j3h_A           70 QAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGI---VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYA  145 (345)
T ss_dssp             CCCCTTSBCEEEEEEEEEEECSTTCCTTCEEEEE---EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHH
T ss_pred             CCcCCCCeeecceEEEEEecCCCCCCCCCEEEee---cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHH
Confidence            5789999998874            789999886   7899999999876  999996   35655 6789999999999


Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++.+..++++|++|||+|++|++|++++|+++..|++|++
T Consensus       146 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~  185 (345)
T 2j3h_A          146 GFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVG  185 (345)
T ss_dssp             HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            9988899999999999999999999999999999998863

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.54  E-value=7.2e-15  Score=99.39  Aligned_cols=66  Identities=39%  Similarity=0.688  Sum_probs=51.7

Q ss_pred             CCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          55 SFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        55 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.++++|+++|+++++++++++.|||+++.+..++++|++|+|+||+|++|++++|+++..|++|+
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~   67 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIY   67 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEE
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEE
Confidence            467899999999999999999999999998888999999999999999999999999999999886

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.29  E-value=2.1e-06  Score=63.96  Aligned_cols=76  Identities=12%  Similarity=0.061  Sum_probs=57.5

Q ss_pred             CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc---CCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430          43 ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG---KMRPGESLLVHAGAGGLGQAAISIALHMGC-T  118 (121)
Q Consensus        43 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~  118 (121)
                      .|++++|+..+...++++|++++.+.++. ..+..++|.++....   .-.+|++|+|.| +|++|.++++.++..|+ +
T Consensus       116 ~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~l~g~~VlIiG-aG~iG~~~a~~l~~~G~~~  193 (404)
T 1gpj_A          116 LGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAERELGSLHDKTVLVVG-AGEMGKTVAKSLVDRGVRA  193 (404)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSCCTTCEEEEES-CCHHHHHHHHHHHHHCCSE
T ss_pred             cCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhccccCCEEEEEC-hHHHHHHHHHHHHHCCCCE
Confidence            36788888877778888888877766543 345567777763222   125799999999 59999999999999998 7


Q ss_pred             Ee
Q psy3430         119 VY  120 (121)
Q Consensus       119 vi  120 (121)
                      |+
T Consensus       194 V~  195 (404)
T 1gpj_A          194 VL  195 (404)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.59  E-value=0.0048  Score=47.18  Aligned_cols=46  Identities=13%  Similarity=0.162  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhhc-CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          75 VYATAYYSLIVRG-KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        75 ~~~ta~~~l~~~~-~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ...+.++++.+.. ...+|++|+|.| .|.+|+.++|.++.+|++|++
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG-~G~IG~~~A~~lka~Ga~Viv  302 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICG-YGDVGKGCAEAMKGQGARVSV  302 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEc-cCHHHHHHHHHHHHCCCEEEE
Confidence            4556777764332 278999999999 799999999999999998863

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.20  E-value=0.0055  Score=44.77  Aligned_cols=28  Identities=25%  Similarity=0.476  Sum_probs=25.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++|+|+|+ |++|+++++.++.+|++|+
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~  194 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQ  194 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEE
Confidence            489999995 9999999999999999876

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.19  E-value=0.0052  Score=42.86  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..-..++++||+||++++|...++.....|++|+
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~   42 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVV   42 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            3456789999999999999999999988999886

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.16  E-value=0.0065  Score=41.09  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|||+||+|++|..+++.+...|.+|+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~   49 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPV   49 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEE
Confidence            478999999999999999999988999876

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.14  E-value=0.0071  Score=41.58  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...+.++||+||+|++|...++.+...|++|+
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~   47 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVT   47 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            34688999999999999999999888999886

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.13  E-value=0.0059  Score=41.70  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=29.3

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .-.+++++||+||++++|...++.+...|++|+
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~   42 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVI   42 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            345789999999999999999999989999886

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.10  E-value=0.0064  Score=44.78  Aligned_cols=29  Identities=34%  Similarity=0.499  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++|+|.| +|.+|+.++++++.+|++|+
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~  199 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKRLGAVVM  199 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            689999999 79999999999999999876

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.04  E-value=0.0072  Score=44.93  Aligned_cols=30  Identities=37%  Similarity=0.457  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++|+|.| +|.+|+.++++++.+|++|++
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~v  200 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANSLGAIVRA  200 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            589999999 799999999999999998763

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.03  E-value=0.0084  Score=41.24  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.++++||+||++++|...++.+...|++|+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~   40 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVI   40 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence            4678999999999999999999888999886

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.02  E-value=0.0084  Score=42.38  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+.+||+||++++|.+.++.....|++|++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i   58 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFI   58 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEE
Confidence            6889999999999999999999999999863

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.00  E-value=0.0073  Score=42.22  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.+++|+||+|++|...++.+...|++|+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~   56 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVV   56 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            468999999999999999999888999886

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.97  E-value=0.0089  Score=42.11  Aligned_cols=30  Identities=23%  Similarity=0.480  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~   75 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIA   75 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.96  E-value=0.0092  Score=41.52  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||+|++|..+++.+...|++|+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~   60 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVV   60 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            468999999999999999999988999886

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.95  E-value=0.0076  Score=42.18  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=27.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ..++++||+||++++|..+++.+...|++|++
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~   41 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVL   41 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEE
Confidence            35789999999999999999998889998863

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.94  E-value=0.0096  Score=41.77  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+++|+||++++|...++.+...|++|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~   44 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVI   44 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999886

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.94  E-value=0.0095  Score=41.72  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~   55 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVV   55 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.93  E-value=0.0097  Score=41.58  Aligned_cols=30  Identities=23%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++||+||++++|...++.+...|++|+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   59 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVL   59 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999989999886

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.92  E-value=0.0077  Score=41.95  Aligned_cols=30  Identities=40%  Similarity=0.567  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi   58 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVV   58 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            578899999999999999999888999886

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.92  E-value=0.0098  Score=41.49  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|+++||+||++++|...++.+...|++|+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~   43 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADII   43 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            3678999999999999999999999999886

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.92  E-value=0.0098  Score=41.32  Aligned_cols=30  Identities=33%  Similarity=0.519  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||+|++|...++.+...|++|+
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~   49 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVV   49 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999886

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.91  E-value=0.0083  Score=41.75  Aligned_cols=30  Identities=33%  Similarity=0.520  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.....|++|+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~   56 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVA   56 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999886

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.91  E-value=0.01  Score=41.29  Aligned_cols=30  Identities=20%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~   41 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADII   41 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEE
Confidence            578999999999999999999989999886

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.89  E-value=0.01  Score=42.04  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=27.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~   59 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLV   59 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            678999999999999999999999999886

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.87  E-value=0.009  Score=41.28  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||++++|...++.+...|++|+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~   57 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVV   57 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888899886

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=95.87  E-value=0.011  Score=40.45  Aligned_cols=30  Identities=23%  Similarity=0.380  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++.+...|++|+
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~   41 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVI   41 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence            468899999999999999999888999886

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.87  E-value=0.011  Score=40.80  Aligned_cols=30  Identities=30%  Similarity=0.450  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++.+...|++|+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~   40 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVA   40 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence            478999999999999999999988999886

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.85  E-value=0.0095  Score=40.55  Aligned_cols=31  Identities=32%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.+++++|+||++++|...++.....|++|+
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~   42 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVV   42 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence            3678999999999999999999989999886

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.85  E-value=0.0096  Score=41.26  Aligned_cols=30  Identities=10%  Similarity=0.224  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~   56 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVV   56 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            468999999999999999999989999886

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.85  E-value=0.0098  Score=41.59  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=26.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..++++||+||++++|...++.+...|++|+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~   52 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVY   52 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            3578999999999999999998888999886

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.84  E-value=0.0089  Score=41.63  Aligned_cols=30  Identities=23%  Similarity=0.266  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|..+++.+...|++|+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~   56 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVA   56 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999989999886

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.84  E-value=0.011  Score=41.21  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||+|++|..+++.+...|++|+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~   50 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVF   50 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            468999999999999999999988999886

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.84  E-value=0.011  Score=40.63  Aligned_cols=29  Identities=21%  Similarity=0.392  Sum_probs=26.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++||+||++++|...++.....|++|+
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~~V~   50 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSWNTI   50 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            67899999999999999999999999886

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.83  E-value=0.011  Score=41.20  Aligned_cols=30  Identities=27%  Similarity=0.419  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   59 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVA   59 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999989999876

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.83  E-value=0.011  Score=41.29  Aligned_cols=30  Identities=20%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   60 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVA   60 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999989999886

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=95.83  E-value=0.0089  Score=41.78  Aligned_cols=30  Identities=27%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|..+++.+...|++|+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~   57 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVI   57 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            478999999999999999999999999886

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.83  E-value=0.0092  Score=41.44  Aligned_cols=30  Identities=23%  Similarity=0.517  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|..+++.....|++|+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~   57 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVW   57 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888999886

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.82  E-value=0.01  Score=43.40  Aligned_cols=30  Identities=37%  Similarity=0.550  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++|+|.|+ |++|+.+++.++.+|++|++
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~  194 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTI  194 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEE
Confidence            4689999996 99999999999999998863

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.82  E-value=0.012  Score=40.78  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~   41 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLS   41 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888999876

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.81  E-value=0.012  Score=41.20  Aligned_cols=30  Identities=33%  Similarity=0.541  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++++|+||+|++|...++.+...|++|+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~   57 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVF   57 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence            478999999999999999999988999886

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.81  E-value=0.0082  Score=42.14  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=26.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   61 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVV   61 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999886

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.81  E-value=0.01  Score=40.87  Aligned_cols=30  Identities=27%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++.+...|++|+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~   42 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVV   42 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999886

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.79  E-value=0.01  Score=41.39  Aligned_cols=30  Identities=20%  Similarity=0.478  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~   55 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTV   55 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999886

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.79  E-value=0.01  Score=41.26  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~   46 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVV   46 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=95.79  E-value=0.0095  Score=41.33  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~   48 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLV   48 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=95.79  E-value=0.012  Score=40.86  Aligned_cols=30  Identities=33%  Similarity=0.600  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||++++|...++.+...|++|+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~   49 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVY   49 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.78  E-value=0.0097  Score=41.61  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   61 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVI   61 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.78  E-value=0.011  Score=43.48  Aligned_cols=30  Identities=37%  Similarity=0.377  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++|+|.| .|.+|+.+++.++.+|++|++
T Consensus       167 ~g~~V~ViG-~G~iG~~~a~~a~~~Ga~V~~  196 (377)
T 2vhw_A          167 EPADVVVIG-AGTAGYNAARIANGMGATVTV  196 (377)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEE
Confidence            589999999 599999999999999998763

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.77  E-value=0.013  Score=40.25  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||+|++|..+++.+...|++|+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~   40 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAV   40 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999876

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.77  E-value=0.01  Score=41.44  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~   56 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVI   56 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888999886

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.76  E-value=0.012  Score=41.51  Aligned_cols=30  Identities=17%  Similarity=0.315  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.....|++|+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   56 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADII   56 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.75  E-value=0.013  Score=41.09  Aligned_cols=30  Identities=13%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~   53 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIV   53 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            468999999999999999999999999886

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.75  E-value=0.013  Score=41.04  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||++++|...++.+...|++|+
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~   57 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIA   57 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEE
Confidence            578999999999999999999999999886

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.74  E-value=0.013  Score=40.46  Aligned_cols=30  Identities=23%  Similarity=0.567  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|..+++.+...|++|+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~   44 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVV   44 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888999876

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=95.73  E-value=0.0097  Score=41.05  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~   40 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVV   40 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888899886

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.73  E-value=0.011  Score=40.56  Aligned_cols=30  Identities=30%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++.+...|++|+
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~   43 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVA   43 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888999886

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.73  E-value=0.014  Score=41.04  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++++||+||++++|...++.....|++|+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~   56 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVG   56 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999989999886

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.73  E-value=0.011  Score=41.13  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~   55 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVG   55 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999876

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.72  E-value=0.011  Score=41.23  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|.+.++.....|++|+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv   55 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVV   55 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999988888899876

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=95.72  E-value=0.011  Score=41.31  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~   54 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARIL   54 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.72  E-value=0.0079  Score=41.74  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~   55 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVI   55 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            468899999999999999999888899886

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.71  E-value=0.012  Score=40.96  Aligned_cols=30  Identities=13%  Similarity=0.242  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~   44 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLL   44 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            468999999999999999999988999876

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.70  E-value=0.014  Score=40.26  Aligned_cols=30  Identities=30%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++++|+||+|++|...++.+...|++|+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~   49 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVA   49 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            468899999999999999999988999886

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.69  E-value=0.013  Score=41.23  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.....|++|+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~   77 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVA   77 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999876

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.68  E-value=0.014  Score=40.49  Aligned_cols=30  Identities=17%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++.+...|++|+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~   59 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLV   59 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999876

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.67  E-value=0.011  Score=41.83  Aligned_cols=30  Identities=27%  Similarity=0.503  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~   69 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVA   69 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999999999886

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.67  E-value=0.012  Score=41.58  Aligned_cols=34  Identities=24%  Similarity=0.127  Sum_probs=26.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.-+++.+|||+||+|.+|..+++.+...|.+|+
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~   42 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVH   42 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCCeEE
Confidence            3457889999999999999999998888898876

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.64  E-value=0.015  Score=40.80  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||+|++|...++.+...|++|+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~   54 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCV   54 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            468899999999999999999988999876

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.64  E-value=0.012  Score=40.51  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.++||+||+|++|...++.+...|++|+
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~   49 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVV   49 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888999876

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=95.64  E-value=0.011  Score=41.38  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~   57 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVL   57 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888999886

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=95.63  E-value=0.015  Score=40.85  Aligned_cols=30  Identities=33%  Similarity=0.615  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||+|++|..+++.+...|++|+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~   46 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVV   46 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            468999999999999999999888999876

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.62  E-value=0.013  Score=41.88  Aligned_cols=30  Identities=17%  Similarity=0.293  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|..+++.+...|++|+
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv   74 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIV   74 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEE
Confidence            578999999999999999999999999886

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.55  E-value=0.049  Score=38.25  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=27.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -++++++|+|++|++|.++++.+...|++|+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~  147 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVV  147 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEE
Confidence            3688999999999999999999999999865

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.55  E-value=0.0082  Score=41.15  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=26.8

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...+++++||+||++++|...++.....|++|+
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~   41 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVV   41 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEE
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            446788999999999999999998888899876

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.53  E-value=0.011  Score=41.31  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||++++|...++.+...|++|+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~   51 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVV   51 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEE
Confidence            468899999999999999998888899886

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.53  E-value=0.015  Score=40.38  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=28.0

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...+.++||+||++++|...++.+...|++|+
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~   54 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVG   54 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            34678999999999999999999999999875

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.53  E-value=0.013  Score=40.93  Aligned_cols=30  Identities=20%  Similarity=0.240  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|...++.+...|++|+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~   56 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVA   56 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578899999999999999999989999886

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.52  E-value=0.014  Score=40.15  Aligned_cols=30  Identities=23%  Similarity=0.470  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|..+++.+...|++|+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~   42 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIH   42 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            568999999999999999999988999876

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.52  E-value=0.048  Score=41.05  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhc-CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          77 ATAYYSLIVRG-KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        77 ~ta~~~l~~~~-~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ...+.++.+.. ..-.|++++|.| .|.+|+.+++.++.+|++|++
T Consensus       204 ~s~~~gi~rat~~~L~GktV~ViG-~G~IGk~vA~~Lra~Ga~Viv  248 (435)
T 3gvp_A          204 ESILDGLKRTTDMMFGGKQVVVCG-YGEVGKGCCAALKAMGSIVYV  248 (435)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhhCceecCCEEEEEe-eCHHHHHHHHHHHHCCCEEEE
Confidence            34455554443 345899999999 899999999999999999873

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.49  E-value=0.014  Score=41.19  Aligned_cols=30  Identities=27%  Similarity=0.524  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||++++|...++.+...|++|+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~   54 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVT   54 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999988999886

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.47  E-value=0.015  Score=42.18  Aligned_cols=30  Identities=20%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vv   73 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIV   73 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888899886

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.47  E-value=0.014  Score=41.60  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||++++|...++.+...|++|+
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv   55 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVV   55 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888999886

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.42  E-value=0.013  Score=40.16  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++.+...|++|+
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~   42 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVA   42 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            467899999999999999998888898876

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.39  E-value=0.014  Score=40.72  Aligned_cols=30  Identities=17%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|+||+|++|..+++.+...|++|+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~   72 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVI   72 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence            467899999999999999998888899876

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.37  E-value=0.017  Score=39.90  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||++++|..+++.+...|++|+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~   54 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIG   54 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            467899999999999999999999999874

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.36  E-value=0.015  Score=40.31  Aligned_cols=31  Identities=29%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+++++|+||++++|...++.+...|++|+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~   53 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVA   53 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEE
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            3578899999999999999999888999876

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.30  E-value=0.02  Score=38.66  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC--EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC--TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~--~vi  120 (121)
                      .+.+++|+||+|++|...++.+...|+  +|+
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~   48 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVT   48 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEE
Confidence            357899999999999999998888898  875

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.24  E-value=0.019  Score=41.16  Aligned_cols=30  Identities=23%  Similarity=0.152  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||++++|..+++.+...|++|+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv   74 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVC   74 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            568999999999999999999999999886

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.23  E-value=0.02  Score=39.33  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=29.1

Q ss_pred             CCCCCCEEEEecCC--chHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGA--GGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~--g~vG~~aiqla~~~G~~vi  120 (121)
                      ...+++++||+||+  +++|...++.+...|++|+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~   44 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELA   44 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEE
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEE
Confidence            45578999999998  9999999999888999886

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.23  E-value=0.022  Score=42.50  Aligned_cols=30  Identities=33%  Similarity=0.496  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++|+|.| .|.+|+.++++++.+|++|++
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v  218 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRLGAVVSA  218 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEE
Confidence            578999999 799999999999999998863

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.18  E-value=0.077  Score=35.78  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=28.5

Q ss_pred             HHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          81 YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        81 ~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+ ...+++++++||..| +| .|..++++++. +.+++
T Consensus        82 ~~~-~~~~~~~~~~vldiG-~G-~G~~~~~l~~~-~~~v~  117 (248)
T 2yvl_A           82 YIA-LKLNLNKEKRVLEFG-TG-SGALLAVLSEV-AGEVW  117 (248)
T ss_dssp             HHH-HHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEE
T ss_pred             HHH-HhcCCCCCCEEEEeC-CC-ccHHHHHHHHh-CCEEE
Confidence            444 667889999999998 56 68999999988 66665

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.17  E-value=0.016  Score=41.28  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=25.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++.+|||+||+|.+|..+++.+...|.+|+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~   47 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVR   47 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEE
Confidence            4567899999999999999999999998876

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.13  E-value=0.024  Score=39.79  Aligned_cols=33  Identities=15%  Similarity=0.135  Sum_probs=26.0

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .-++..+|||+||+|.+|..+++.+...|.+|+
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~   40 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNVEVF   40 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCCEEE
Confidence            345678999999999999999999888898876

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.02  E-value=0.036  Score=41.58  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=29.4

Q ss_pred             hhcCC-CCCCEEEEecCCchHHHHHHHHHHH-CCCEEe
Q psy3430          85 VRGKM-RPGESLLVHAGAGGLGQAAISIALH-MGCTVY  120 (121)
Q Consensus        85 ~~~~~-~~g~~vli~ga~g~vG~~aiqla~~-~G~~vi  120 (121)
                      ...++ +.++++||+||++|+|++..+.+.. .|++|+
T Consensus        53 ~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv   90 (422)
T 3s8m_A           53 ARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTL   90 (422)
T ss_dssp             HTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEE
T ss_pred             hccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEE
Confidence            34566 3578899999999999988887777 899886

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.01  E-value=0.026  Score=40.08  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|||+||+|.+|..+++.+...|.+|+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~   48 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEIL   48 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            467899999999999999998888898876

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.00  E-value=0.018  Score=39.85  Aligned_cols=30  Identities=27%  Similarity=0.384  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++||+||+|++|...++.+...|++|+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~   62 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVA   62 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            468999999999999999988888899876

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.00  E-value=0.024  Score=42.03  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++.+|+|.| .|.+|+.+++.++.+|++|++
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v  212 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRLGAKTTG  212 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCCCEEEE
Confidence            678999999 799999999999999998863

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.95  E-value=0.027  Score=39.33  Aligned_cols=30  Identities=13%  Similarity=0.131  Sum_probs=27.0

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGA--GGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~--g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||+  |++|...++.+...|++|+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~   51 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLA   51 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE
Confidence            57899999998  8999999998888999886

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.90  E-value=0.042  Score=34.89  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ....++++|+|.| +|.+|+.+++.++..|.+|+
T Consensus        14 ~~~~~~~~v~IiG-~G~iG~~la~~L~~~g~~V~   46 (155)
T 2g1u_A           14 SKKQKSKYIVIFG-CGRLGSLIANLASSSGHSVV   46 (155)
T ss_dssp             ---CCCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             hcccCCCcEEEEC-CCHHHHHHHHHHHhCCCeEE
Confidence            3445789999999 79999999999999998775

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.90  E-value=0.027  Score=38.74  Aligned_cols=30  Identities=40%  Similarity=0.588  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCc-hHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAG-GLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g-~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||+| ++|...++.....|++|+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~   51 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVV   51 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEE
Confidence            578999999976 899999998888899886

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=94.84  E-value=0.088  Score=37.51  Aligned_cols=49  Identities=16%  Similarity=0.187  Sum_probs=35.8

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +||........|.+...--.|.+++|.|+++-+|..+.+++...|++|+
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVt  188 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS  188 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            4444444444553333334899999999777799999999999999876

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.84  E-value=0.034  Score=39.47  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=26.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|||+||+|.+|..+++.+...|.+|+
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~   49 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVV   49 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEE
Confidence            457899999999999999998888898876

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.79  E-value=0.092  Score=37.40  Aligned_cols=48  Identities=17%  Similarity=0.113  Sum_probs=35.0

Q ss_pred             chHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          73 PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        73 ~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ||........+.+..---.|.+++|.|+++-+|..+.+++...|++|+
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  189 (285)
T 3l07_A          142 SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT  189 (285)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence            444444444553333334799999999777799999999999999875

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.77  E-value=0.029  Score=38.49  Aligned_cols=31  Identities=19%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCC---CEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMG---CTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G---~~vi  120 (121)
                      .++.++||+||+|++|..+++.+...|   ++|+
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~   52 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLF   52 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEE
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEE
Confidence            356789999999999999999888888   7776

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.76  E-value=0.038  Score=39.32  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|||+||+|.+|..+++.+...|.+|+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~   53 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVI   53 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            357999999999999999999988898876

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.73  E-value=0.069  Score=40.48  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=34.0

Q ss_pred             HHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          78 TAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        78 ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ..+.++.+. ...-.|++++|.| .|.+|+.+++.++.+|++|++
T Consensus       232 slvdgI~Ratg~~L~GKTVgVIG-~G~IGr~vA~~lrafGa~Viv  275 (464)
T 3n58_A          232 SLVDGIRRGTDVMMAGKVAVVCG-YGDVGKGSAQSLAGAGARVKV  275 (464)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHhcCCcccCCEEEEEC-cCHHHHHHHHHHHHCCCEEEE
Confidence            344455443 3456899999999 899999999999999999874

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.73  E-value=0.097  Score=37.31  Aligned_cols=48  Identities=23%  Similarity=0.185  Sum_probs=35.4

Q ss_pred             chHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          73 PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        73 ~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ||........|.+..---.|.+++|.|+++-+|..+.+++...|++|+
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVt  189 (286)
T 4a5o_A          142 PCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVT  189 (286)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence            444444445553333334799999999777799999999999999876

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.71  E-value=0.038  Score=38.95  Aligned_cols=30  Identities=17%  Similarity=0.126  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAG--GLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g--~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||+|  ++|...++.+...|++|+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~   60 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVA   60 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEE
Confidence            578999999987  999999998888999886

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.71  E-value=0.0082  Score=37.84  Aligned_cols=41  Identities=12%  Similarity=-0.007  Sum_probs=29.9

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          78 TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        78 ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++++ +......+++|+|.| +|.+|...++.++..|++|+
T Consensus         8 v~~~a~-~~~~~~~~~~v~iiG-~G~iG~~~a~~l~~~g~~v~   48 (144)
T 3oj0_A            8 IPSIVY-DIVRKNGGNKILLVG-NGMLASEIAPYFSYPQYKVT   48 (144)
T ss_dssp             HHHHHH-HHHHHHCCCEEEEEC-CSHHHHHHGGGCCTTTCEEE
T ss_pred             HHHHHH-HHHHhccCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            345555 233333489999999 69999999998888888753

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=94.70  E-value=0.053  Score=40.50  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=28.9

Q ss_pred             hhcCC-CCCCEEEEecCCchHHHHHHHHHHH-CCCEEe
Q psy3430          85 VRGKM-RPGESLLVHAGAGGLGQAAISIALH-MGCTVY  120 (121)
Q Consensus        85 ~~~~~-~~g~~vli~ga~g~vG~~aiqla~~-~G~~vi  120 (121)
                      ....+ ..++++||+||++++|++.++.+.. .|++|+
T Consensus        39 ~~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv   76 (405)
T 3zu3_A           39 TEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTL   76 (405)
T ss_dssp             HHCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEE
T ss_pred             hcCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEE
Confidence            34555 4567889999999999988877777 899876

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=94.63  E-value=0.091  Score=40.13  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=32.4

Q ss_pred             HHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          79 AYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        79 a~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.++.+..+. -.|++++|.| .|++|..+++.++..|++|++
T Consensus       251 l~dgi~r~tg~~L~GKtVvVtG-aGgIG~aiA~~Laa~GA~Viv  293 (488)
T 3ond_A          251 LPDGLMRATDVMIAGKVAVVAG-YGDVGKGCAAALKQAGARVIV  293 (488)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCcccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            33444444343 4799999999 569999999999999999863

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.61  E-value=0.11  Score=36.70  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=27.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|++|+|.| .|.+|+.+++.++.+|++|+
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~  182 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAALGAKVK  182 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEE
Confidence            4689999999 89999999999999999876

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=94.61  E-value=0.033  Score=38.31  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=26.9

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGA--GGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~--g~vG~~aiqla~~~G~~vi  120 (121)
                      .+++++|+||+  +++|...++.+...|++|+
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~   50 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVA   50 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEE
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEE
Confidence            57899999999  8999999998888999876

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.60  E-value=0.11  Score=37.29  Aligned_cols=49  Identities=16%  Similarity=0.147  Sum_probs=36.3

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++|....+...|.+..---.|.+++|.|+++-+|..+.+++...|++|+
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  193 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVT  193 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            3444444555554443345899999999777799999999999999876

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.59  E-value=0.098  Score=37.08  Aligned_cols=47  Identities=13%  Similarity=0.108  Sum_probs=36.3

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +||+.......+.+..  -.|.+++|.|+++-+|..+.+++...|++|+
T Consensus       132 ~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVt  178 (276)
T 3ngx_A          132 VPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVS  178 (276)
T ss_dssp             CCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEE
Confidence            3445555555564444  6899999999777799999999999999876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.48  E-value=0.046  Score=38.48  Aligned_cols=31  Identities=16%  Similarity=0.128  Sum_probs=27.0

Q ss_pred             CCCCEEEEecCCch--HHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGG--LGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~--vG~~aiqla~~~G~~vi  120 (121)
                      -.++++||+||+|+  +|...++.+...|++|+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~   61 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELA   61 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEE
Confidence            36789999999955  99999999988999886

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.47  E-value=0.049  Score=38.86  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+|||+||+|.+|..+++.+...|.+|+
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~   55 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVV   55 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            57899999999999999998888898876

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.39  E-value=0.15  Score=37.38  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=28.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|++|.|.| .|.+|+.+++.++.+|++|+
T Consensus       173 L~GktV~I~G-~GnVG~~~A~~l~~~GakVv  202 (355)
T 1c1d_A          173 LDGLTVLVQG-LGAVGGSLASLAAEAGAQLL  202 (355)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            5799999998 89999999999999999987

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.35  E-value=0.045  Score=39.34  Aligned_cols=32  Identities=19%  Similarity=0.477  Sum_probs=27.0

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHC-CC-EEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHM-GC-TVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~-G~-~vi  120 (121)
                      .-.+.+|||+||+|.+|..+++.+... |. +|+
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~   51 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKII   51 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEE
Confidence            345789999999999999999888777 87 765

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=94.34  E-value=0.055  Score=40.48  Aligned_cols=35  Identities=14%  Similarity=0.073  Sum_probs=27.4

Q ss_pred             hcCCCCCCEEEEecCCchHHHH--HHHHHHHCCCEEe
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQA--AISIALHMGCTVY  120 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~--aiqla~~~G~~vi  120 (121)
                      ..++..++++||+||++++|++  ..+.....|++|+
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi   90 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTI   90 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEE
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEE
Confidence            4556788999999999999998  5555555599875

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.31  E-value=0.054  Score=38.50  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|||+||+|.+|..+++.+...|.+|+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~   55 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVT   55 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEE
Confidence            457899999999999999998888898876

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.17  E-value=0.034  Score=37.63  Aligned_cols=29  Identities=10%  Similarity=0.129  Sum_probs=25.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ..+|||+||+|++|..+++.+...| ++|+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~   52 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQT   52 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEE
Confidence            3579999999999999999998888 6775

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=94.15  E-value=0.033  Score=38.87  Aligned_cols=28  Identities=18%  Similarity=0.393  Sum_probs=26.0

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++||+||+|++|...++.+...|++|+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~   49 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLV   49 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            7899999999999999999988999886

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=94.15  E-value=0.03  Score=38.79  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=26.4

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..++..+|||+||+|.+|..+++.+...|.+|+
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~   40 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNVEVI   40 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSEEEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCCeEE
Confidence            456678999999999999999998888888775

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.11  E-value=0.053  Score=37.72  Aligned_cols=30  Identities=10%  Similarity=0.162  Sum_probs=26.4

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGA--GGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~--g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++||+||+  +|+|...++.....|++|+
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~   56 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELA   56 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEE
Confidence            57899999998  6699999998888999876

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=94.10  E-value=0.047  Score=42.60  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=27.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|+++||+||++++|.+.++.+...|++|++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~   48 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVV   48 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            5789999999999999999999889998863

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=93.92  E-value=0.046  Score=38.44  Aligned_cols=30  Identities=17%  Similarity=0.327  Sum_probs=24.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC---EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC---TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~---~vi  120 (121)
                      .++++||+||++++|...++.....|+   +|+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~   64 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLI   64 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEE
Confidence            468999999999999998877766665   665

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=93.91  E-value=0.16  Score=38.21  Aligned_cols=42  Identities=17%  Similarity=0.184  Sum_probs=32.9

Q ss_pred             HHHHHHhhc-CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          79 AYYSLIVRG-KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        79 a~~~l~~~~-~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.++.+.. ..-.|.+|.|.| .|.+|...++.++.+|++|++
T Consensus       197 lldgi~ratg~~L~GktVgIiG-~G~IG~~vA~~Lka~Ga~Viv  239 (436)
T 3h9u_A          197 LVDGIKRATDVMIAGKTACVCG-YGDVGKGCAAALRGFGARVVV  239 (436)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHhcCCcccCCEEEEEe-eCHHHHHHHHHHHHCCCEEEE
Confidence            344443333 334799999999 899999999999999999873

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=93.87  E-value=0.062  Score=40.44  Aligned_cols=30  Identities=27%  Similarity=0.405  Sum_probs=27.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.++||+|+++++|...++.....|++|+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vv  241 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVV  241 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEE
Confidence            577999999999999999988888899876

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=93.81  E-value=0.077  Score=38.33  Aligned_cols=30  Identities=27%  Similarity=0.427  Sum_probs=26.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ++.+|||+||+|.+|..+++.+...| .+|+
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~   61 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVH   61 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEE
Confidence            35789999999999999999988889 8775

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=93.72  E-value=0.075  Score=38.29  Aligned_cols=28  Identities=21%  Similarity=0.173  Sum_probs=25.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+|||+||+|.+|..+++.+...|.+|+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~   56 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVH   56 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEE
Confidence            5899999999999999998888898876

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.60  E-value=0.079  Score=37.40  Aligned_cols=28  Identities=21%  Similarity=0.185  Sum_probs=25.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+|||+||+|.+|..+++.+...|.+|+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~   41 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLV   41 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            4899999999999999999888898876

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=93.60  E-value=0.071  Score=41.57  Aligned_cols=31  Identities=19%  Similarity=0.332  Sum_probs=27.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|+.++|+||++++|.+.++.+...|++|++
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~  351 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVV  351 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEE
Confidence            4678999999999999999999999999863

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=93.57  E-value=0.083  Score=37.99  Aligned_cols=28  Identities=21%  Similarity=0.198  Sum_probs=25.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+|||+||+|.+|..+++.+...|.+|+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~   52 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVH   52 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            5799999999999999998888898876

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=93.57  E-value=0.058  Score=38.54  Aligned_cols=30  Identities=23%  Similarity=0.441  Sum_probs=24.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMG-CTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G-~~vi  120 (121)
                      ++.+|||+||+|.+|..+++.+...| .+|+
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~   75 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDIL   75 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEE
Confidence            35689999999999999999888888 7765

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=93.50  E-value=0.095  Score=37.90  Aligned_cols=29  Identities=14%  Similarity=0.110  Sum_probs=26.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+|||+||+|.+|..+++.+...|.+|+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~   57 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVI   57 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEE
Confidence            46899999999999999998888898876

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=93.39  E-value=0.065  Score=41.07  Aligned_cols=31  Identities=13%  Similarity=0.055  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      .++++.++||+|++|++|...++.....|++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~  277 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAG  277 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCC
Confidence            4578899999999999999999888778886

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=93.39  E-value=0.24  Score=35.49  Aligned_cols=48  Identities=17%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             chHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          73 PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        73 ~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ||+.......|.+...--.|.+++|.|++.-+|.-+.+++...|++|+
T Consensus       146 PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  193 (301)
T 1a4i_A          146 PCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT  193 (301)
T ss_dssp             CHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEE
Confidence            444433344442222224789999999766799999999999999876

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.34  E-value=0.091  Score=37.68  Aligned_cols=29  Identities=17%  Similarity=0.256  Sum_probs=25.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHM-GCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~-G~~vi  120 (121)
                      +.+|||+||+|.+|..+++.+... |.+|+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~   53 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVF   53 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEE
Confidence            578999999999999999888777 88776

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.20  E-value=0.11  Score=39.43  Aligned_cols=29  Identities=17%  Similarity=0.163  Sum_probs=26.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+|||+||+|.+|..+++.+...|.+|+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~  175 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVI  175 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            67999999999999999999988898876

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=93.18  E-value=0.25  Score=35.19  Aligned_cols=49  Identities=18%  Similarity=0.072  Sum_probs=35.5

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +||+.......|.+...--.|.+++|.|++.-+|.-+.+++...|++|+
T Consensus       139 ~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  187 (288)
T 1b0a_A          139 RPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT  187 (288)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEE
Confidence            3544444444553333334789999999766789999999999999876

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.14  E-value=0.11  Score=36.65  Aligned_cols=31  Identities=19%  Similarity=0.221  Sum_probs=27.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -.|++|+|.| .|.+|+.+++.++.+|++|++
T Consensus       155 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~  185 (300)
T 2rir_A          155 IHGSQVAVLG-LGRTGMTIARTFAALGANVKV  185 (300)
T ss_dssp             STTSEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEE
Confidence            4689999999 799999999999999998763

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=92.95  E-value=0.13  Score=38.65  Aligned_cols=33  Identities=15%  Similarity=0.124  Sum_probs=27.0

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHC---CCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHM---GCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~---G~~vi  120 (121)
                      ....+.+|||+||+|.+|..+++-+...   |.+|+
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~  104 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLI  104 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEE
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEE
Confidence            3456889999999999999998777666   77776

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=92.90  E-value=0.073  Score=37.68  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMG  116 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G  116 (121)
                      .+.+|||+||+|.+|..+++.+...|
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g   38 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDG   38 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcC
Confidence            45689999999999999998888788

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=92.89  E-value=0.18  Score=38.57  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=27.8

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++++.++||+|++|++|...++.+...|+ +|+
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vv  288 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLV  288 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEE
Confidence            56789999999999999999988888898 454

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=92.88  E-value=0.12  Score=39.15  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=27.8

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      .++++.++||+|++|++|...++.+...|++ |+
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vv  255 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLL  255 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEE
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEE
Confidence            3567899999999999999999888777884 54

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=92.85  E-value=0.17  Score=37.66  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=25.0

Q ss_pred             CCCCCEEEEecCCchHHHHH-HHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAA-ISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~a-iqla~~~G~~vi  120 (121)
                      ...++++||+|+++++|++. +.+|...|+.++
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi   79 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATI   79 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEE
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEE
Confidence            34678999999999999874 566656788665

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=92.79  E-value=0.06  Score=39.60  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=26.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++.+|||+||+|.+|..+++.+...|.+|+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~   97 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIY   97 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEE
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEE
Confidence            3456899999999999999988877787775

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=92.62  E-value=0.61  Score=34.21  Aligned_cols=30  Identities=17%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|.+|+|.| .|.+|..+++.+...|++|+
T Consensus       171 L~GktV~V~G-~G~VG~~~A~~L~~~GakVv  200 (364)
T 1leh_A          171 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLV  200 (364)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCcCEEEEEC-chHHHHHHHHHHHHCCCEEE
Confidence            4789999999 79999999999999999986

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.52  E-value=0.33  Score=33.78  Aligned_cols=29  Identities=28%  Similarity=0.579  Sum_probs=25.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++.+++|.|+ |++|.++++.+...|++|+
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~  146 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVT  146 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEE
Confidence            6789999995 8999999999999998875

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=92.48  E-value=0.086  Score=37.36  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=24.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCC--CEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMG--CTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G--~~vi  120 (121)
                      .+.+|||+||+|.+|..+++.+...|  .+|+
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~   54 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKII   54 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEE
Confidence            45789999999999999999888877  4554

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=92.08  E-value=0.21  Score=36.45  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=29.1

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.++.+|+|.| +|.+|..+++.++.+|.+|++
T Consensus        10 ~~~~~k~IlIlG-~G~~g~~la~aa~~~G~~vi~   42 (389)
T 3q2o_A           10 IILPGKTIGIIG-GGQLGRMMALAAKEMGYKIAV   42 (389)
T ss_dssp             CCCTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE
Confidence            456899999999 889999999999999998763

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=91.83  E-value=0.13  Score=36.78  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..++++++++||..| +|..+..++.+++..|++|+
T Consensus       116 ~la~l~~g~rVLDIG-cG~G~~ta~~lA~~~ga~V~  150 (298)
T 3fpf_A          116 ALGRFRRGERAVFIG-GGPLPLTGILLSHVYGMRVN  150 (298)
T ss_dssp             HHTTCCTTCEEEEEC-CCSSCHHHHHHHHTTCCEEE
T ss_pred             HHcCCCCcCEEEEEC-CCccHHHHHHHHHccCCEEE
Confidence            357899999999999 77767777888888899886

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=91.80  E-value=0.3  Score=37.27  Aligned_cols=31  Identities=32%  Similarity=0.548  Sum_probs=26.3

Q ss_pred             CCC--CEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          90 RPG--ESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        90 ~~g--~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +++  .++||+|++|++|...++.....|+ +|+
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vv  268 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLV  268 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEE
Confidence            445  8999999999999999988888898 554

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=91.63  E-value=0.25  Score=36.67  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.++++|+|.| +|.+|+..++.|+.+|.+|++
T Consensus        31 ~~~~~~~IlIlG-~G~lg~~~~~aa~~lG~~v~v   63 (419)
T 4e4t_A           31 PILPGAWLGMVG-GGQLGRMFCFAAQSMGYRVAV   63 (419)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            467899999999 799999999999999998763

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=91.46  E-value=0.6  Score=35.31  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=28.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -+|.+|.|.| .|.+|..+++.+...|++|++
T Consensus       233 l~Gk~vaVQG-~GnVG~~aa~~L~e~GakvVa  263 (450)
T 4fcc_A          233 FEGMRVSVSG-SGNVAQYAIEKAMEFGARVIT  263 (450)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeC-CChHHHHHHHHHHhcCCeEEE
Confidence            4689999999 999999999999999999873

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.36  E-value=0.53  Score=33.98  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=26.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+++|.|++.-+|..+++++...|++|+
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVt  205 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGATVY  205 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCCEEE
Confidence            3689999999555679999999999999876

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=91.28  E-value=0.51  Score=33.89  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+.+++|.| +|++|.+++..+...|+ +|+
T Consensus       153 ~gk~~lVlG-aGG~g~aia~~L~~~Ga~~V~  182 (315)
T 3tnl_A          153 IGKKMTICG-AGGAATAICIQAALDGVKEIS  182 (315)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             cCCEEEEEC-CChHHHHHHHHHHHCCCCEEE
Confidence            688999999 58999999999999998 665

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=91.28  E-value=0.49  Score=33.57  Aligned_cols=48  Identities=15%  Similarity=0.018  Sum_probs=33.7

Q ss_pred             chHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHC--CCEEe
Q psy3430          73 PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHM--GCTVY  120 (121)
Q Consensus        73 ~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~--G~~vi  120 (121)
                      |+....+...+.+...--.|.+++|.|++.-+|..+.+++...  |++|+
T Consensus       139 PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVt  188 (281)
T 2c2x_A          139 PCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVT  188 (281)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEE
T ss_pred             CChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEE
Confidence            4444444444433322347899999996667899999999999  88876

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=90.78  E-value=0.8  Score=34.31  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|.+|.|.| .|.+|+.+++++...|++|+
T Consensus       216 l~gk~vaVqG-~GnVG~~~a~~L~~~GakVV  245 (419)
T 3aoe_E          216 LRGARVVVQG-LGQVGAAVALHAERLGMRVV  245 (419)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            3689999999 99999999999999999987

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.73  E-value=0.65  Score=32.74  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      -.+.+++|.| +|++|.+++..+...|+ +|+
T Consensus       125 l~~k~vlVlG-aGG~g~aia~~L~~~G~~~v~  155 (283)
T 3jyo_A          125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQ  155 (283)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEE
Confidence            4688999999 59999999998888998 564

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=89.69  E-value=0.88  Score=32.62  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=25.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+.+++|.| +|+.|.+++..+...|+ +|+
T Consensus       147 ~gk~~lVlG-AGGaaraia~~L~~~G~~~v~  176 (312)
T 3t4e_A          147 RGKTMVLLG-AGGAATAIGAQAAIEGIKEIK  176 (312)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCCEEE
Confidence            578999999 69999999999999998 664

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=89.55  E-value=1.1  Score=33.72  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=27.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|.+|.|.| .|.||+.+++++..+|++|+
T Consensus       233 l~g~~vaVqG-fGnVG~~~a~~L~e~GakvV  262 (440)
T 3aog_A          233 VEGARVAIQG-FGNVGNAAARAFHDHGARVV  262 (440)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCEEEEec-cCHHHHHHHHHHHHCCCEEE
Confidence            3689999998 99999999999999999987

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=89.53  E-value=1.1  Score=33.47  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHH-CCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALH-MGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~-~G~~vi  120 (121)
                      -.|.+|.|.| .|.+|+.++++++. +|++|+
T Consensus       210 l~gktvgI~G-~G~VG~~vA~~l~~~~G~kVv  240 (419)
T 1gtm_A          210 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVV  240 (419)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCEEEEEc-CCHHHHHHHHHHHHhcCCEEE
Confidence            3689999999 89999999999999 999987

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.18  E-value=1.4  Score=32.81  Aligned_cols=52  Identities=27%  Similarity=0.274  Sum_probs=35.8

Q ss_pred             HHHhhcchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          67 EEASTIPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        67 ~~aa~l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++..+.......-+.++ +..+.+ +..+|+|.| +|..|..+++++..+|+ +|+
T Consensus       163 DiqGTa~V~lAall~al-~l~g~~l~d~kVVi~G-AGaAG~~iA~ll~~~Ga~~I~  216 (398)
T 2a9f_A          163 DQHGTAIVVLAAIFNSL-KLLKKSLDEVSIVVNG-GGSAGLSITRKLLAAGATKVT  216 (398)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTTCCTTSCEEEEEC-CSHHHHHHHHHHHHHTCCEEE
T ss_pred             hhhhHHHHHHHHHHHHH-HHhCCCCCccEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            33434444445555566 343333 456899998 89999999999999998 665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.15  E-value=0.32  Score=31.41  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHM-GCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~-G~~vi  120 (121)
                      +++|+|.| .|.+|..+++.++.. |.+|+
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~   67 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISL   67 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEE
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEE
Confidence            67899999 799999999999888 88765

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=89.12  E-value=0.32  Score=37.97  Aligned_cols=30  Identities=20%  Similarity=0.213  Sum_probs=25.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHM-GCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~-G~~vi  120 (121)
                      .+.+|||+||+|.+|..+++.+... |.+|+
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~  344 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVY  344 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEE
Confidence            4578999999999999999887776 77775

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=88.98  E-value=0.5  Score=36.17  Aligned_cols=30  Identities=17%  Similarity=0.352  Sum_probs=27.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.+|.|.| .|.||..+++++..+|++|++
T Consensus       243 ~g~tVaVQG-~GNVG~~aa~~L~e~GakVVa  272 (501)
T 3mw9_A          243 GDKTFVVQG-FGNVGLHSMRYLHRFGAKCIT  272 (501)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            689999999 999999999999999999873

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=88.90  E-value=0.84  Score=32.25  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=25.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      -.+.+++|.| +|+.|.+++..++..|+ +|+
T Consensus       120 ~~~k~vlvlG-aGGaaraia~~L~~~G~~~v~  150 (282)
T 3fbt_A          120 IKNNICVVLG-SGGAARAVLQYLKDNFAKDIY  150 (282)
T ss_dssp             CTTSEEEEEC-SSTTHHHHHHHHHHTTCSEEE
T ss_pred             ccCCEEEEEC-CcHHHHHHHHHHHHcCCCEEE
Confidence            3588999999 68999999999999998 664

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=88.88  E-value=0.75  Score=34.51  Aligned_cols=30  Identities=13%  Similarity=0.249  Sum_probs=27.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|.|.| .|.+|+.+++++..+|++|+
T Consensus       219 l~g~~vaVqG-~GnVG~~aa~~l~e~GakVV  248 (424)
T 3k92_A          219 LQNARIIIQG-FGNAGSFLAKFMHDAGAKVI  248 (424)
T ss_dssp             GGGCEEEEEC-CSHHHHHHHHHHHHHTCEEE
T ss_pred             cccCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            3688999999 89999999999999999986

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=88.76  E-value=1.7  Score=32.27  Aligned_cols=49  Identities=24%  Similarity=0.283  Sum_probs=34.3

Q ss_pred             hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +.......-+.++....+--+..+|+|.| +|..|..+++++..+|+ +|+
T Consensus       171 TasV~lAal~~A~~i~g~~l~~~kVVv~G-AGaAG~~iAkll~~~G~~~I~  220 (388)
T 1vl6_A          171 TAVVVSAAFLNALKLTEKKIEEVKVVVNG-IGAAGYNIVKFLLDLGVKNVV  220 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCEEEEEC-CSHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcEEEEEC-CCHHHHHHHHHHHhCCCCeEE
Confidence            33444444555563334333567899999 89999999999999998 554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=88.74  E-value=0.74  Score=32.02  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=25.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|.| +|++|.+++..+...|++|+
T Consensus       118 ~~~~vlvlG-aGg~g~a~a~~L~~~G~~v~  146 (272)
T 1p77_A          118 PNQHVLILG-AGGATKGVLLPLLQAQQNIV  146 (272)
T ss_dssp             TTCEEEEEC-CSHHHHTTHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence            578999999 58999999998888898775

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=88.71  E-value=0.42  Score=34.41  Aligned_cols=29  Identities=31%  Similarity=0.340  Sum_probs=26.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~  173 (331)
T 1xdw_A          145 RNCTVGVVG-LGRIGRVAAQIFHGMGATVI  173 (331)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            467899999 89999999999999999886

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=88.51  E-value=0.61  Score=33.22  Aligned_cols=29  Identities=21%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       141 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~  169 (307)
T 1wwk_A          141 EGKTIGIIG-FGRIGYQVAKIANALGMNIL  169 (307)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEEc-cCHHHHHHHHHHHHCCCEEE
Confidence            578999999 89999999999999999886

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=88.47  E-value=0.45  Score=34.33  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       144 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~  172 (333)
T 1dxy_A          144 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVI  172 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            578999999 89999999999999999886

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=88.36  E-value=0.45  Score=35.38  Aligned_cols=30  Identities=20%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC---EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC---TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~---~vi  120 (121)
                      +.-+|+|.|+.|-+|+.|+++|+.+|+   .|.
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~  245 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANIL  245 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceE
Confidence            345789999779999999999999997   554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=88.24  E-value=0.65  Score=33.17  Aligned_cols=30  Identities=27%  Similarity=0.330  Sum_probs=27.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       140 l~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~  169 (313)
T 2ekl_A          140 LAGKTIGIVG-FGRIGTKVGIIANAMGMKVL  169 (313)
T ss_dssp             CTTCEEEEES-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHHCCCEEE
Confidence            3578999999 89999999999999999886

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=88.11  E-value=0.54  Score=35.96  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=28.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .-.|.+|.|.| .|.+|..+++.++.+|++|++
T Consensus       274 ~L~GktVgIIG-~G~IG~~vA~~l~~~G~~V~v  305 (494)
T 3d64_A          274 MIAGKIAVVAG-YGDVGKGCAQSLRGLGATVWV  305 (494)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEE
T ss_pred             ccCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEE
Confidence            35789999999 899999999999999999863

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=88.08  E-value=0.5  Score=35.98  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      --.|.+|.|.| .|.+|..+++.++.+|++|++
T Consensus       254 ~l~GktVgIIG-~G~IG~~vA~~l~~~G~~Viv  285 (479)
T 1v8b_A          254 LISGKIVVICG-YGDVGKGCASSMKGLGARVYI  285 (479)
T ss_dssp             CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEE
T ss_pred             ccCCCEEEEEe-eCHHHHHHHHHHHhCcCEEEE
Confidence            45789999999 899999999999999999863

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=87.98  E-value=0.96  Score=34.38  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|.+|.|.| .|.+|..+++++..+|++|+
T Consensus       251 ~g~~vaVqG-~GnVG~~~a~~L~~~GakvV  279 (470)
T 2bma_A          251 EKQTAVVSG-SGNVALYCVQKLLHLNVKVL  279 (470)
T ss_dssp             GGCEEEEEC-SSHHHHHHHHHHHHTTCEEC
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence            688999999 89999999999999999987

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=87.80  E-value=1.4  Score=33.01  Aligned_cols=30  Identities=20%  Similarity=0.349  Sum_probs=27.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|.|.| .|.+|..+++++..+|++|+
T Consensus       208 l~gk~vaVqG-~GnVG~~aa~~L~e~GakVV  237 (421)
T 1v9l_A          208 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVI  237 (421)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            4689999999 89999999999999999987

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=87.78  E-value=1.3  Score=31.35  Aligned_cols=29  Identities=24%  Similarity=0.302  Sum_probs=25.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+.+++|.| +|++|.+++..+...|+ +|+
T Consensus       140 ~~~~vlVlG-aGg~g~aia~~L~~~G~~~V~  169 (297)
T 2egg_A          140 DGKRILVIG-AGGGARGIYFSLLSTAAERID  169 (297)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCSEEE
T ss_pred             CCCEEEEEC-cHHHHHHHHHHHHHCCCCEEE
Confidence            578999999 68999999999988998 665

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=87.70  E-value=1.3  Score=31.16  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=24.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+.+++|.| +|++|.+++..+...|+ +|+
T Consensus       125 ~~k~vlvlG-aGg~g~aia~~L~~~G~~~v~  154 (281)
T 3o8q_A          125 KGATILLIG-AGGAARGVLKPLLDQQPASIT  154 (281)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTCCSEEE
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHhcCCCeEE
Confidence            688999999 58999999988888996 664

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=87.68  E-value=0.59  Score=41.15  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCch-HHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGG-LGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~-vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||+++ +|..+++.+...|++|+
T Consensus       651 ~gKvaLVTGASgGgIG~aIAr~LA~~GA~VV  681 (1878)
T 2uv9_A          651 QGKHALMTGAGAGSIGAEVLQGLLSGGAKVI  681 (1878)
T ss_dssp             TTCEEEEESCCTTSHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEE
Confidence            5789999999998 99999999888999886

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=87.54  E-value=1  Score=34.08  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=27.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|.+|.|.| .|.+|..+++++..+|++|+
T Consensus       237 l~g~~VaVQG-~GnVG~~aa~~L~e~GakvV  266 (456)
T 3r3j_A          237 LENKKCLVSG-SGNVAQYLVEKLIEKGAIVL  266 (456)
T ss_dssp             STTCCEEEEC-CSHHHHHHHHHHHHHTCCBC
T ss_pred             ccCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            3688999999 89999999999999999886

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=87.50  E-value=0.56  Score=33.80  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~  173 (333)
T 1j4a_A          145 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVI  173 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEE
Confidence            468999999 89999999999999999886

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=87.37  E-value=0.77  Score=33.47  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|++
T Consensus       159 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~  188 (352)
T 3gg9_A          159 KGQTLGIFG-YGKIGQLVAGYGRAFGMNVLV  188 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEE
Confidence            478999999 899999999999999999863

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=87.18  E-value=0.7  Score=33.42  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       164 ~g~tvgIIG-lG~IG~~vA~~l~~~G~~V~  192 (335)
T 2g76_A          164 NGKTLGILG-LGRIGREVATRMQSFGMKTI  192 (335)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             CcCEEEEEe-ECHHHHHHHHHHHHCCCEEE
Confidence            578999999 89999999999999999886

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=86.98  E-value=0.85  Score=32.85  Aligned_cols=29  Identities=31%  Similarity=0.516  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       136 ~gktvGIiG-lG~IG~~vA~~l~~~G~~V~  164 (324)
T 3evt_A          136 TGQQLLIYG-TGQIGQSLAAKASALGMHVI  164 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCeEEEEC-cCHHHHHHHHHHHhCCCEEE
Confidence            478999999 99999999999999999886

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=86.97  E-value=0.65  Score=40.91  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCch-HHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGG-LGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~-vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||+++ +|...++.+...|++|+
T Consensus       674 ~gKvaLVTGASsGgIG~aIA~~La~~GA~Vv  704 (1887)
T 2uv8_A          674 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVV  704 (1887)
T ss_dssp             TTCEEEEESCCSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEE
Confidence            5789999999998 99999999888999886

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=86.84  E-value=1  Score=33.68  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|.+|.|.| .|.+|+.+++++..+|++|+
T Consensus       211 ~g~~vaVqG-~GnVG~~~a~~L~~~GakvV  239 (421)
T 2yfq_A          211 EDAKIAVQG-FGNVGTFTVKNIERQGGKVC  239 (421)
T ss_dssp             GGSCEEEEC-CSHHHHHHHHHHHHTTCCEE
T ss_pred             cCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            578999999 99999999999999999987

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=86.70  E-value=0.24  Score=37.33  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=25.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +..+|||+||+|.+|..+++.+...|.+|+
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~  178 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIY  178 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEE
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEE
Confidence            346899999999999999988866677765

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=86.69  E-value=1.3  Score=30.96  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+.+++|.| +|++|.+++..+...|+ +|+
T Consensus       119 ~~k~~lvlG-aGg~~~aia~~L~~~G~~~v~  148 (272)
T 3pwz_A          119 RNRRVLLLG-AGGAVRGALLPFLQAGPSELV  148 (272)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTCCSEEE
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHcCCCEEE
Confidence            688999999 68999999998888996 664

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=86.59  E-value=2.4  Score=31.63  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHH-CCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALH-MGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~-~G~~vi  120 (121)
                      -+|.+|.|.| .|.+|..+++++.. +|++|+
T Consensus       207 l~g~~vaVqG-~GnVG~~~a~~L~e~~GakvV  237 (415)
T 2tmg_A          207 PKKATVAVQG-FGNVGQFAALLISQELGSKVV  237 (415)
T ss_dssp             TTTCEEEEEC-CSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHhcCCEEE
Confidence            3689999999 89999999999998 999987

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=86.56  E-value=0.71  Score=42.48  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             CCCCCEEEEecCCch-HHHHHHHHHHHCCCEEeC
Q psy3430          89 MRPGESLLVHAGAGG-LGQAAISIALHMGCTVYT  121 (121)
Q Consensus        89 ~~~g~~vli~ga~g~-vG~~aiqla~~~G~~vi~  121 (121)
                      .-.|+++||+||++| +|.+.++.....|++|++
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi 2166 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIA 2166 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEE
Confidence            347899999999999 999999999999999873

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=86.49  E-value=1.8  Score=32.75  Aligned_cols=30  Identities=17%  Similarity=0.263  Sum_probs=27.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|.+|.|.| .|.+|..+++++..+|++|++
T Consensus       229 ~g~~v~VqG-~GnVG~~~a~~L~~~GakvVa  258 (449)
T 1bgv_A          229 VGKTVALAG-FGNVAWGAAKKLAELGAKAVT  258 (449)
T ss_dssp             TTCEEEECC-SSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            689999999 899999999999999999873

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=86.49  E-value=0.67  Score=32.65  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+.+++|.| +|++|.+++..+...|+ +|+
T Consensus       116 ~~k~vlvlG-aGg~g~aia~~L~~~G~~~v~  145 (277)
T 3don_A          116 EDAYILILG-AGGASKGIANELYKIVRPTLT  145 (277)
T ss_dssp             GGCCEEEEC-CSHHHHHHHHHHHTTCCSCCE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEE
Confidence            578999999 69999999999888998 554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=86.29  E-value=0.84  Score=32.67  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       145 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~  173 (320)
T 1gdh_A          145 DNKTLGIYG-FGSIGQALAKRAQGFDMDID  173 (320)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            578899999 89999999999999999886

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=86.20  E-value=0.83  Score=32.40  Aligned_cols=29  Identities=28%  Similarity=0.456  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       121 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~  149 (290)
T 3gvx_A          121 YGKALGILG-YGGIGRRVAHLAKAFGMRVI  149 (290)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTCEEE
T ss_pred             ecchheeec-cCchhHHHHHHHHhhCcEEE
Confidence            478999999 99999999999999999886

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=86.07  E-value=1  Score=31.65  Aligned_cols=28  Identities=25%  Similarity=0.231  Sum_probs=24.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.+++|.| +|+.|.+++..+...|.+|+
T Consensus       118 ~k~vlvlG-aGGaaraia~~L~~~G~~v~  145 (269)
T 3phh_A          118 YQNALILG-AGGSAKALACELKKQGLQVS  145 (269)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            88999999 69999999999888887664

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=86.04  E-value=1  Score=32.12  Aligned_cols=29  Identities=34%  Similarity=0.420  Sum_probs=26.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       143 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~  171 (311)
T 2cuk_A          143 QGLTLGLVG-MGRIGQAVAKRALAFGMRVV  171 (311)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEE-ECHHHHHHHHHHHHCCCEEE
Confidence            578899999 89999999999999999876

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=85.47  E-value=1.1  Score=32.23  Aligned_cols=29  Identities=31%  Similarity=0.567  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       139 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~  167 (324)
T 3hg7_A          139 KGRTLLILG-TGSIGQHIAHTGKHFGMKVL  167 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             ccceEEEEE-ECHHHHHHHHHHHhCCCEEE
Confidence            478999999 99999999999999999886

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=85.37  E-value=0.87  Score=36.67  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=26.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHH-HCCCE-Ee
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIAL-HMGCT-VY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~-~~G~~-vi  120 (121)
                      +.++.+++|+|++|++|...++... ..|++ |+
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vv  560 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLV  560 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEE
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEE
Confidence            3578899999999999999988776 78985 54

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=85.35  E-value=1  Score=33.06  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=28.0

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ...++.+|+|.| +|..|.+.++-++.+|.+|++
T Consensus        20 ~mm~~~~I~ilG-gG~lg~~l~~aa~~lG~~v~~   52 (403)
T 3k5i_A           20 HMWNSRKVGVLG-GGQLGRMLVESANRLNIQVNV   52 (403)
T ss_dssp             -CCSCCEEEEEC-CSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            345789999999 789999999999999998763

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=85.30  E-value=0.5  Score=40.99  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCch-HHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGG-LGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~-vG~~aiqla~~~G~~vi  120 (121)
                      .|+++||+||+++ +|.+.++.+...|++|+
T Consensus       475 ~GKvALVTGASgGGIGrAIAr~LA~~GA~VV  505 (1688)
T 2pff_A          475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVV  505 (1688)
T ss_dssp             CSCCEEECSCSSSSTHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHHCcCEEE
Confidence            5788999999998 99999998888899886

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=85.17  E-value=0.95  Score=32.89  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|++
T Consensus       147 ~gktvgIiG-lG~IG~~vA~~l~~~G~~V~~  176 (343)
T 2yq5_A          147 YNLTVGLIG-VGHIGSAVAEIFSAMGAKVIA  176 (343)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEEe-cCHHHHHHHHHHhhCCCEEEE
Confidence            478999999 999999999999999999863

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=84.94  E-value=0.76  Score=33.13  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~  172 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQGWGATLQ  172 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTTTSCCEEE
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEE
Confidence            478999999 99999999999999999886

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=84.92  E-value=0.99  Score=32.59  Aligned_cols=29  Identities=24%  Similarity=0.289  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++.|.| .|.+|+..++.++.+|++|+
T Consensus       140 ~g~tvGIiG-~G~IG~~va~~~~~fg~~v~  168 (334)
T 3kb6_A          140 NRLTLGVIG-TGRIGSRVAMYGLAFGMKVL  168 (334)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             cCcEEEEEC-cchHHHHHHHhhcccCceee
Confidence            467899999 99999999999999999986

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=84.77  E-value=0.85  Score=31.15  Aligned_cols=29  Identities=28%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|||.| .|.+|...++.+...|++|+
T Consensus        30 ~gk~VLVVG-gG~va~~ka~~Ll~~GA~Vt   58 (223)
T 3dfz_A           30 KGRSVLVVG-GGTIATRRIKGFLQEGAAIT   58 (223)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHGGGCCCEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            578999999 79999999999999999765

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=84.76  E-value=1.8  Score=27.77  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=24.0

Q ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430          86 RGKMRPGESLLVHAGAGGLGQAAISIALHMG  116 (121)
Q Consensus        86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G  116 (121)
                      ...++++++||-.| +|. |..++.+++..+
T Consensus        17 ~~~~~~~~~vLDlG-cG~-G~~~~~la~~~~   45 (196)
T 2nyu_A           17 HQILRPGLRVLDCG-AAP-GAWSQVAVQKVN   45 (196)
T ss_dssp             HCCCCTTCEEEEET-CCS-CHHHHHHHHHTT
T ss_pred             cCCCCCCCEEEEeC-CCC-CHHHHHHHHHhc
Confidence            34578899999999 666 899999999876

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=84.70  E-value=1.1  Score=32.56  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       172 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~  200 (345)
T 4g2n_A          172 TGRRLGIFG-MGRIGRAIATRARGFGLAIH  200 (345)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEEE-eChhHHHHHHHHHHCCCEEE
Confidence            468999999 99999999999999999886

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=84.66  E-value=0.94  Score=33.23  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       175 ~gktvGIIG-lG~IG~~vA~~l~~fG~~V~  203 (365)
T 4hy3_A          175 AGSEIGIVG-FGDLGKALRRVLSGFRARIR  203 (365)
T ss_dssp             SSSEEEEEC-CSHHHHHHHHHHTTSCCEEE
T ss_pred             CCCEEEEec-CCcccHHHHHhhhhCCCEEE
Confidence            378999999 99999999999999999886

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=84.60  E-value=0.84  Score=32.71  Aligned_cols=29  Identities=21%  Similarity=0.133  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       138 ~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~  166 (315)
T 3pp8_A          138 EEFSVGIMG-AGVLGAKVAESLQAWGFPLR  166 (315)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEE
Confidence            478999999 89999999999999999886

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=84.57  E-value=1.1  Score=32.50  Aligned_cols=29  Identities=34%  Similarity=0.407  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       167 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~  195 (347)
T 1mx3_A          167 RGETLGIIG-LGRVGQAVALRAKAFGFNVL  195 (347)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEE
Confidence            578999999 89999999999999999886

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=84.42  E-value=0.86  Score=29.67  Aligned_cols=79  Identities=11%  Similarity=0.040  Sum_probs=41.8

Q ss_pred             ccCCEEEEEccCCceeEEEE-eCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHH
Q psy3430          32 TKGRRVMGLVAARSLATTVL-ADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAIS  110 (121)
Q Consensus        32 ~~Gd~V~~~~~~g~~~~~~~-v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiq  110 (121)
                      +.|+.+....   .|.+|.. .+....+.+++.+++.... .+.. ......+..  .++++++||-.| +|. |..+..
T Consensus         7 ~~~~~~~~~p---~w~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~-~~~~~~l~~--~~~~~~~vLDiG-~G~-G~~~~~   77 (205)
T 3grz_A            7 NLSRHLAIVP---EWEDYQPVFKDQEIIRLDPGLAFGTGN-HQTT-QLAMLGIER--AMVKPLTVADVG-TGS-GILAIA   77 (205)
T ss_dssp             EEETTEEEEE---TTCCCCCSSTTCEEEEESCC-----CC-HHHH-HHHHHHHHH--HCSSCCEEEEET-CTT-SHHHHH
T ss_pred             EECCcEEEec---cccccccCCCCceeEEecCCcccCCCC-CccH-HHHHHHHHH--hccCCCEEEEEC-CCC-CHHHHH
Confidence            3455444332   4777776 6677788888877665431 1111 111112211  256889999998 454 777777


Q ss_pred             HHHHCCC-EEe
Q psy3430         111 IALHMGC-TVY  120 (121)
Q Consensus       111 la~~~G~-~vi  120 (121)
                      +++. +. +++
T Consensus        78 l~~~-~~~~v~   87 (205)
T 3grz_A           78 AHKL-GAKSVL   87 (205)
T ss_dssp             HHHT-TCSEEE
T ss_pred             HHHC-CCCEEE
Confidence            7764 44 554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=84.32  E-value=1.1  Score=40.63  Aligned_cols=29  Identities=24%  Similarity=0.412  Sum_probs=26.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      .++.+++|+|+++++|+..++.....|++
T Consensus      1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~ 1910 (2512)
T 2vz8_A         1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQ 1910 (2512)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCC
Confidence            46788999999999999999999999996

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=84.08  E-value=1.2  Score=32.08  Aligned_cols=29  Identities=21%  Similarity=0.436  Sum_probs=26.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++..|.+|+
T Consensus       145 ~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~  173 (333)
T 2d0i_A          145 YGKKVGILG-MGAIGKAIARRLIPFGVKLY  173 (333)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEE
T ss_pred             CcCEEEEEc-cCHHHHHHHHHHHHCCCEEE
Confidence            577899999 89999999999999999876

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=84.01  E-value=0.62  Score=35.60  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=22.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|.|| |++|.+++..+...|++|+
T Consensus       363 ~~k~vlV~Ga-GGig~aia~~L~~~G~~V~  391 (523)
T 2o7s_A          363 ASKTVVVIGA-GGAGKALAYGAKEKGAKVV  391 (523)
T ss_dssp             ---CEEEECC-SHHHHHHHHHHHHHCC-CE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEE
Confidence            4678999996 7999999999888898765

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=84.00  E-value=1.2  Score=32.85  Aligned_cols=30  Identities=23%  Similarity=0.293  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      |-.+++|+| +|.+++.++++++.+|++|++
T Consensus       203 P~~rL~IfG-AGhva~ala~~a~~lg~~V~v  232 (386)
T 2we8_A          203 PRPRMLVFG-AIDFAAAVAQQGAFLGYRVTV  232 (386)
T ss_dssp             CCCEEEEEC-CSTHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEE
Confidence            567899999 899999999999999998763

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=83.85  E-value=1.4  Score=31.27  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=26.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       123 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~  151 (303)
T 1qp8_A          123 QGEKVAVLG-LGEIGTRVGKILAALGAQVR  151 (303)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEE
Confidence            567899999 89999999999999999886

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=83.59  E-value=1  Score=31.70  Aligned_cols=30  Identities=17%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.+|||.| .|.+|...++.+...|++|++
T Consensus        12 ~~k~VLVVG-gG~va~rka~~Ll~~Ga~VtV   41 (274)
T 1kyq_A           12 KDKRILLIG-GGEVGLTRLYKLMPTGCKLTL   41 (274)
T ss_dssp             TTCEEEEEE-ESHHHHHHHHHHGGGTCEEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhCCCEEEE
Confidence            578999999 899999999999999998753

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=83.44  E-value=1.3  Score=32.24  Aligned_cols=29  Identities=21%  Similarity=0.465  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++|+
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~~G~~V~  191 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKPFGCNLL  191 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCEEE
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHHCCCEEE
Confidence            588999999 99999999999999999886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=83.43  E-value=1.5  Score=31.42  Aligned_cols=29  Identities=21%  Similarity=0.276  Sum_probs=26.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++..|.+|+
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~  177 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKGFNMRIL  177 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCEEE
Confidence            567999999 89999999999999999876

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=83.17  E-value=1.7  Score=30.39  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+..+++++++||-.| +|. |..+..+++..|++|+
T Consensus        81 ~~~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~~~~v~  117 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIG-CGW-GTTMRRAVERFDVNVI  117 (318)
T ss_dssp             HHHTTSCCCTTCEEEEES-CTT-SHHHHHHHHHHCCEEE
T ss_pred             HHHHhcCCCCcCEEEEEc-ccc-hHHHHHHHHHCCCEEE
Confidence            344667788999999998 554 8888999988788765

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=83.10  E-value=2  Score=29.98  Aligned_cols=28  Identities=11%  Similarity=0.202  Sum_probs=24.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|.|+ |++|.+++..+...| +|+
T Consensus       127 ~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~  154 (287)
T 1nvt_A          127 KDKNIVIYGA-GGAARAVAFELAKDN-NII  154 (287)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS-EEE
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCC-CEE
Confidence            5789999995 699999999888888 875

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=83.07  E-value=3  Score=31.34  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC  117 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~  117 (121)
                      .+.+++|.| +|+.|.+++..+...|+
T Consensus       185 ~~~rvlvlG-AGgAg~aia~~L~~~G~  210 (439)
T 2dvm_A          185 SEITLALFG-AGAAGFATLRILTEAGV  210 (439)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHcCC
Confidence            578999999 79999999999999997

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=82.89  E-value=1.1  Score=32.63  Aligned_cols=29  Identities=14%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCT-VY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~-vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|++ |+
T Consensus       163 ~g~tvgIIG-~G~IG~~vA~~l~~~G~~~V~  192 (364)
T 2j6i_A          163 EGKTIATIG-AGRIGYRVLERLVPFNPKELL  192 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCSEEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhCCCcEEE
Confidence            678999999 899999999999999996 76

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=82.70  E-value=1.4  Score=32.61  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a~G~~V~  218 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLH  218 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEE
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEE
Confidence            578999999 99999999999999999886

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=81.73  E-value=3.7  Score=30.24  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=27.9

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      --.|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       113 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~  143 (380)
T 2o4c_A          113 DLAERTYGVVG-AGQVGGRLVEVLRGLGWKVL  143 (380)
T ss_dssp             CGGGCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCEEEEEe-CCHHHHHHHHHHHHCCCEEE
Confidence            34688999999 99999999999999999886

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=81.59  E-value=1.7  Score=31.45  Aligned_cols=29  Identities=31%  Similarity=0.370  Sum_probs=26.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       170 ~gktiGIIG-lG~IG~~vA~~l~~~G~~V~  198 (340)
T 4dgs_A          170 KGKRIGVLG-LGQIGRALASRAEAFGMSVR  198 (340)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            478999999 89999999999999999886

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=81.55  E-value=3.7  Score=30.25  Aligned_cols=30  Identities=10%  Similarity=0.150  Sum_probs=27.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus       117 l~gktvGIIG-lG~IG~~vA~~l~a~G~~V~  146 (381)
T 3oet_A          117 LRDRTIGIVG-VGNVGSRLQTRLEALGIRTL  146 (381)
T ss_dssp             GGGCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCEEEEEe-ECHHHHHHHHHHHHCCCEEE
Confidence            3588999999 99999999999999999886

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=81.13  E-value=2.1  Score=32.03  Aligned_cols=29  Identities=28%  Similarity=0.405  Sum_probs=26.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++.|.| .|.+|...++.++.+|.+|+
T Consensus       155 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~  183 (416)
T 3k5p_A          155 RGKTLGIVG-YGNIGSQVGNLAESLGMTVR  183 (416)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEE
Confidence            478999999 99999999999999999986

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=80.99  E-value=2.4  Score=29.42  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+..+++++++||-.| +| .|..+..+++..|++|+
T Consensus        63 ~~~~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~   99 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIG-CG-WGSTMRHAVAEYDVNVI   99 (302)
T ss_dssp             HHHHTTCCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEE
T ss_pred             HHHHHcCCCCcCEEEEee-cc-CcHHHHHHHHhCCCEEE
Confidence            344667889999999998 55 48899999998888765

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=80.89  E-value=2.4  Score=29.42  Aligned_cols=29  Identities=34%  Similarity=0.527  Sum_probs=24.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+++|.| +|++|.+.++.+...|++|+
T Consensus       128 ~~~~v~iiG-aG~~g~aia~~L~~~g~~V~  156 (275)
T 2hk9_A          128 KEKSILVLG-AGGASRAVIYALVKEGAKVF  156 (275)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHcCCEEE
Confidence            578999999 79999999998888888664

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=80.81  E-value=1.9  Score=31.14  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHH-HCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIAL-HMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~-~~G~~vi  120 (121)
                      -.|.+|.|.| .|.+|...++.++ .+|.+|+
T Consensus       161 l~g~~vgIIG-~G~IG~~vA~~l~~~~G~~V~  191 (348)
T 2w2k_A          161 PRGHVLGAVG-LGAIQKEIARKAVHGLGMKLV  191 (348)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEEE-ECHHHHHHHHHHHHhcCCEEE
Confidence            3578999999 8999999999999 9999876

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=80.74  E-value=2.4  Score=29.62  Aligned_cols=32  Identities=19%  Similarity=0.460  Sum_probs=25.7

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ....+.+++|.| +|+.+.+++..++..|+ +|+
T Consensus       115 ~~~~~~~vlvlG-aGgaarav~~~L~~~G~~~i~  147 (271)
T 1npy_A          115 HLNKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLK  147 (271)
T ss_dssp             TCCTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEE
T ss_pred             CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEE
Confidence            344678999999 89999999988888897 554

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=80.57  E-value=1.7  Score=31.19  Aligned_cols=29  Identities=17%  Similarity=0.245  Sum_probs=25.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...++.++..|.+|+
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~  182 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKPFGVQRF  182 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCCEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            467899999 89999999999999998875

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=80.35  E-value=1.6  Score=30.17  Aligned_cols=28  Identities=32%  Similarity=0.558  Sum_probs=23.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      .+ +++|.| +|++|.+++..+...|+ +|+
T Consensus       108 ~~-~vliiG-aGg~a~ai~~~L~~~G~~~I~  136 (253)
T 3u62_A          108 KE-PVVVVG-AGGAARAVIYALLQMGVKDIW  136 (253)
T ss_dssp             CS-SEEEEC-CSHHHHHHHHHHHHTTCCCEE
T ss_pred             CC-eEEEEC-cHHHHHHHHHHHHHcCCCEEE
Confidence            46 999999 79999999998888998 554

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=80.05  E-value=2.4  Score=27.84  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ....++++++||-.| +|. |..++.+++. +.+|+
T Consensus        49 ~~l~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~v~   81 (204)
T 3njr_A           49 AALAPRRGELLWDIG-GGS-GSVSVEWCLA-GGRAI   81 (204)
T ss_dssp             HHHCCCTTCEEEEET-CTT-CHHHHHHHHT-TCEEE
T ss_pred             HhcCCCCCCEEEEec-CCC-CHHHHHHHHc-CCEEE
Confidence            555788999999998 554 8888888887 77775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	5e-10
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	9e-10
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	1e-09
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	4e-08
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	7e-08
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	1e-07
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-07
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	2e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	4e-07
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	5e-07
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	6e-07
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	8e-07
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	1e-06
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-06
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	1e-06
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	3e-06
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	4e-06
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	4e-06
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	6e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	1e-05
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-05
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	1e-05
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	3e-05
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	7e-05
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	8e-05
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	8e-05
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	1e-04
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-04
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	3e-04
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	4e-04
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	4e-04
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	5e-04
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	5e-04
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	6e-04
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	0.001
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	0.001
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	0.002
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	0.002
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	0.003

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 52.3 bits (124), Expect = 5e-10
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH-AGAGGLGQAAISIALHMGCTVY 120
           T+ + +TI V   TAY  L    K+ PG+   +   G   +G+ A  I   +     
Sbjct: 2   TINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSI 58

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (122), Expect = 9e-10
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
           + E+A+   +   T YY L    +++P E  L HA AGG+G  A   A  +G  + 
Sbjct: 2   SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLI 57

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.2 bits (121), Expect = 1e-09
 Identities = 25/54 (46%), Positives = 37/54 (68%)

Query: 67  EEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            EA+T  V Y TA++SL   G++ PGE +L+H+  GG+G AA+SIA  +G  +Y
Sbjct: 1   NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIY 54

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 46.9 bits (110), Expect = 4e-08
 Identities = 10/56 (17%), Positives = 18/56 (32%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           LE+   I   ++T Y S +   K+  G +  V    G      +         +  
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIG 58

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 46.2 bits (108), Expect = 7e-08
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 69  ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             TI +   TAY+ L+    ++ GE++LV A AG +G     IA   GC V 
Sbjct: 7   LGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVV 58

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.6 bits (107), Expect = 1e-07
 Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 51  LADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGL 104
                +L  +P   +L+EA    ++         +       + +L +   G +
Sbjct: 106 SVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVS-LEETPGALKDILQNRIQGRV 158

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-07
 Identities = 8/56 (14%), Positives = 18/56 (32%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           L++   +    +T Y + +   K+ PG    V    G      +   +     +  
Sbjct: 3   LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIG 58

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 2e-07
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 68  EASTIPVVYATAYYSLIVRGKMRPG--ESLLVHAGAGGLGQAAISIALHMGCTVY 120
               I +   T+   +  +G +  G  ++++V   AG  G  A  I   +GC+  
Sbjct: 5   FLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRV 59

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 43.7 bits (102), Expect = 4e-07
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 37  VMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLL 96
              LV    LA  V      L  +P    +            A+ +L+ RG    G+ ++
Sbjct: 72  YAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRGH--TGKVVV 129

Query: 97  V 97
            
Sbjct: 130 R 130

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 44.1 bits (103), Expect = 5e-07
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC 117
           + + + +  +  T Y+   V   + PG ++ V  GAG +G AA + A  +G 
Sbjct: 1   IRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVA-GAGPVGLAAAASARLLGA 50

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 43.6 bits (101), Expect = 6e-07
 Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 2/54 (3%)

Query: 58  WEVPAKWTLEEASTIPVVYATAYYSLIV-RGKMRPGESLLVHAGA-GGLGQAAI 109
             +      +  +       T   S+       +P   L     A    G+  I
Sbjct: 120 DFIKLPNPAQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLI 173

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 43.7 bits (102), Expect = 8e-07
 Identities = 6/63 (9%), Positives = 25/63 (39%)

Query: 35  RRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGES 94
           R+V+  +   + +   + +   + ++     L+E  T  +   +   ++ +    +   +
Sbjct: 136 RKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRT 195

Query: 95  LLV 97
           +L 
Sbjct: 196 VLS 198

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.9 bits (100), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 65  TLEEASTIPVVYATAYYS---LIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           TL+EA  I     TA  S   L   G       +LV    GG+G  A+S+    G TV  
Sbjct: 2   TLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEA 61

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           LE    I   +++ Y + I   K+ PG +  V  G G +G +AI      G +   
Sbjct: 3   LERVCLIGCGFSSGYGAAINTAKVTPGSTCAVF-GLGCVGLSAIIGCKIAGASRII 57

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             ++ + I + Y TAY +LI    ++ GES+LVH  +GG+G AA  IA   G  + 
Sbjct: 2   DFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKIL 57

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
            E+   I   ++T Y + +  GK++PG + +V  G GG+G + I      G +  
Sbjct: 4   PEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVF-GLGGVGLSVIMGCKSAGASRI 57

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.8 bits (97), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
           L+  +      ATAY++     +   G+++++  GAG LG   + IA  +G    
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENV 56

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 41.4 bits (96), Expect = 4e-06
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 68  EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           E+  I   +AT Y + +   K+ PG +  V  G GG+G +AI      G +   
Sbjct: 4   ESCLIGCGFATGYGAAVNTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRII 56

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 41.2 bits (95), Expect = 4e-06
 Identities = 7/56 (12%), Positives = 17/56 (30%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           L+    +    +T + + +   K+ PG +  V         A +         +  
Sbjct: 3   LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIA 58

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 41.2 bits (95), Expect = 6e-06
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH 98
          + EEA+  PV + TAY +L  R + RPGE +LV 
Sbjct: 2  SPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQ 34

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
           LE A  I  +  T ++       +  G S++V  G G +G   I+ A   G    
Sbjct: 3   LENAVMITDMMTTGFHGA-ELADIEMGSSVVVI-GIGAVGLMGIAGAKLRGAGRI 55

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 17/69 (24%), Gaps = 6/69 (8%)

Query: 48  TTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQA 107
             V      L ++P +    E   I  V      SL        GE       AG   + 
Sbjct: 138 VLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE-----FDAGVPKKF 191

Query: 108 AISIALHMG 116
            I       
Sbjct: 192 VIDPHKTFS 200

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVH-AGAGGLGQAAISIALHMGCTVYT 121
           +E    +     T   + I   K+ P  S +   AGA GL     +        +  
Sbjct: 3   IELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV 59

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
           + EEA+ I     T Y +L      +PGE + ++   G  G  A+  A  MG  V 
Sbjct: 2   SFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGL-GHVAVQYAKAMGLNVV 55

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.0 bits (87), Expect = 7e-05
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 77  ATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
           A + + L   G      S+LV    GG+G  A+S+    G  V  
Sbjct: 9   ALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVA 53

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 8e-05
 Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 3/57 (5%)

Query: 47  ATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGG 103
                 + +F +++P           P+  A   +      K   G  +++      
Sbjct: 129 CRFYKHNAAFCYKLPDNVKPLVTHRFPLEKALEAFE---TFKKGLGLKIMLKCDPSD 182

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.7 bits (86), Expect = 8e-05
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
             E + I     T Y  L  +   RPG+ + +  G GGLG  A+  A  MG  V 
Sbjct: 3   FAEIAPILCAGVTVYKGL-KQTNARPGQWVAIS-GIGGLGHVAVQYARAMGLHVA 55

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 50  VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV 97
           V     F+  +P    +E           A +  + +G +R   +L+ 
Sbjct: 139 VRVHEHFVVPIPENIWVETLPVGEAGVHEA-FERMEKGDVRYRFTLVG 185

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 2/53 (3%), Positives = 18/53 (33%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV 97
           + +   +     + ++     ++E  T  + +     +  +    +   +++ 
Sbjct: 144 TFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVK 196

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.4 bits (83), Expect = 3e-04
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV 97
             +        +L  +P       A  I +         I+RG++R G +++ 
Sbjct: 100 GYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVR 150

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 36.1 bits (82), Expect = 4e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 62  AKWTLEEASTIPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
           ++  L E + +     TAY ++    +   PG  + +  G GGLG  A+ +   M     
Sbjct: 2   SREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIV-GVGGLGHIAVQLLKVMTPATV 60

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 45  SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV 97
           S    ++AD + +     K  + E    P+  A   + + +  +   G SLL+
Sbjct: 95  SSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEI-LESRATQGSSLLI 146

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.9 bits (81), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
              EA+ +     T Y ++  +  + P ++LLV    GGLG  A+ IA  +     
Sbjct: 2   NAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATI 56

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 35.7 bits (81), Expect = 5e-04
 Identities = 3/43 (6%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 58  WEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAG 100
            ++P    +++  T          +     + +   ++ V   
Sbjct: 134 HKLPDNCNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS 175

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 34.2 bits (78), Expect = 6e-04
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 65  TLEEASTIPVVYATAYYSLI---VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
              +A  I     TA   ++     G       ++V   +GG+G  A+++   +G  V  
Sbjct: 2   DARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVA 61

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 53  DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV 97
               ++++P K      S  P+      +  I+ G    G+ +L+
Sbjct: 105 ADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILL 149

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 6/99 (6%)

Query: 21  CVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAY 80
           C  G      +  GR   G  +  + A              A+ +    +          
Sbjct: 97  CNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSR------E 150

Query: 81  YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
            + +   K  P + L+       + QAAI     +    
Sbjct: 151 NNTVKVTKDFPFDQLVKFYAFDEINQAAIDSRKGITLKP 189

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 20  DCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATA 79
            C+          +     GL      A  +      + ++P    +E            
Sbjct: 95  TCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDV 154

Query: 80  YYSLIVRGKMRPGESLLV 97
              L  +G++  G ++L+
Sbjct: 155 LERL-EKGEV-LGRAVLI 170

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 66  LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
              A+ +     T Y  L VR    PG+ + +  G GG+G     I+  MG   Y 
Sbjct: 3   SHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIV-GLGGIGSMGTLISKAMGAETYV 56

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.003
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 65  TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
           T EE + I    +   ++   RG +  G  +LV  GAG +G   + +A  MG    
Sbjct: 2   TFEEGALIEP-LSVGIHA-CRRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGAAQV 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.81
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.78
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.75
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.71
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.7
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.68
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.68
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.65
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.64
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.64
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.64
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.62
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.6
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.58
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.57
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.57
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.56
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.56
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.54
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.53
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.53
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.53
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.53
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.51
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.51
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.5
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.49
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.48
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.48
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.46
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.44
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.43
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.42
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.42
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.39
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.39
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.39
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.37
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.37
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.37
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.35
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.32
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.29
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.27
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.26
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.19
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.18
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.16
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.1
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.02
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	98.95
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	98.87
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.87
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.82
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.93
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.57
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.51
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.39
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.21
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.89
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.39
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.2
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.57
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.52
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.25
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.71
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.53
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.44
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.38
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.34
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.34
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.25
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.14
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.12
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.09
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.06
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.91
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.69
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.65
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.61
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.43
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.31
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	92.27
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.19
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.92
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.67
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.26
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.98
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.89
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	90.62
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.39
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.09
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	90.04
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.41
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.34
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.25
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.13
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.55
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.54
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	88.52
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.26
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	87.87
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	87.84
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	87.57
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.27
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.87
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.36
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	86.14
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.1
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	85.86
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.54
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	85.02
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.83
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	83.71
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	83.24
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.17
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	82.65
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.24
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.0
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	81.58
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	81.57
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	80.75

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=3.8e-21  Score=122.37  Aligned_cols=77  Identities=23%  Similarity=0.290  Sum_probs=71.6

Q ss_pred             CCCCccCcceEEEEccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEE
Q psy3430          18 GQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV   97 (121)
Q Consensus        18 ~~~~~~G~e~~G~V~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli   97 (121)
                      .+|+++|+|++|+| +||+|+++..+|+|+||++++++.++++|+++|+++|+++++++.|||++|.+.+  +.|++||+
T Consensus        54 ~~P~v~G~E~~G~V-vGd~V~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~  130 (131)
T d1iz0a1          54 HPPFIPGMEVVGVV-EGRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVR  130 (131)
T ss_dssp             CSSBCCCCEEEEEE-TTEEEEEECSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEE
T ss_pred             cceeEeeeeeEEee-ccceEEEEeccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEE
Confidence            57899999999999 6999999999999999999999999999999999999999999999999997665  45999986

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.78  E-value=3.3e-20  Score=123.14  Aligned_cols=84  Identities=18%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLW   58 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~   58 (121)
                      .++|.++|||++|+|          ++||||+...                            .+|+|+||+++++++++
T Consensus        55 ~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~  134 (178)
T d1e3ja1          55 VKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCH  134 (178)
T ss_dssp             CCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEE
T ss_pred             ccCCeeeccccceEEEecCcccCCCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeeccccee
Confidence            456889999999999          7999997531                            35899999999999999


Q ss_pred             EcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCC
Q psy3430          59 EVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGA  101 (121)
Q Consensus        59 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~  101 (121)
                      ++|+++|+++++++++++.|+|+++ +.+++++||+|+|.||+
T Consensus       135 ~iP~~~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~C  176 (178)
T d1e3ja1         135 KLPDNCNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMISC  176 (178)
T ss_dssp             ECCTTCCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEEC
T ss_pred             eCCCCCCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEccc
Confidence            9999999999999999999999998 68899999999999864

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.8e-19  Score=114.73  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=74.7

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR   86 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~   86 (121)
                      .+|.++|||++|+|          ++||||++.. .+|+|+||++++++.++++|+++|+++|++++++..|+|+.+...
T Consensus        59 ~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~  138 (150)
T d1yb5a1          59 LLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIH  138 (150)
T ss_dssp             CSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHH
T ss_pred             cccccCccceeeeeEeecceeeccccCccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEE
Confidence            56889999999999          7999998764 458999999999999999999999999999999999999999899


Q ss_pred             cCCCCCCEEEEe
Q psy3430          87 GKMRPGESLLVH   98 (121)
Q Consensus        87 ~~~~~g~~vli~   98 (121)
                      +..++|+++||.
T Consensus       139 g~~~~G~~vliL  150 (150)
T d1yb5a1         139 GSGATGKMILLL  150 (150)
T ss_dssp             SSCCSSEEEEEC
T ss_pred             cCcccCCEEEEC
Confidence            999999999873

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.71  E-value=5.5e-18  Score=111.78  Aligned_cols=78  Identities=18%  Similarity=0.143  Sum_probs=69.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE---------------------------ccCCceeEEEEeCCCCeEEc
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL---------------------------VAARSLATTVLADPSFLWEV   60 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~---------------------------~~~g~~~~~~~v~~~~~~~~   60 (121)
                      .+|.++|||++|+|          ++||||+..                           ..+|+|+||++++++.++++
T Consensus        56 ~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~i  135 (171)
T d1h2ba1          56 KLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKL  135 (171)
T ss_dssp             CSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEEC
T ss_pred             ccccccceeeeeeeecccCCCCcCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceec
Confidence            56899999999999          789999763                           23589999999999999999


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEE
Q psy3430          61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV   97 (121)
Q Consensus        61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli   97 (121)
                      |+++++++++++.+++.|+|+++ +..++ .|++|||
T Consensus       136 P~~~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         136 PKDVRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CTTCCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCCCCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99999988888999999999999 66788 8999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.70  E-value=7e-18  Score=109.29  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             CCCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHH
Q psy3430          17 AGQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYS   82 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~   82 (121)
                      ...|.++|+|++|+|        ++||+|+...      .+|+|+||+++|++.++++|+++|+ ++++++++..|++.+
T Consensus        58 ~~~p~v~g~e~~G~v~~~~~~~~~~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~  136 (152)
T d1xa0a1          58 KTYPFVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALK  136 (152)
T ss_dssp             CSSSBCCCSEEEEEEEECCSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHH
T ss_pred             ccccceeeeeeeeeeeccCCCccccCCEEEEecCccccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHH
Confidence            357899999999998        7999998763      3589999999999999999999984 788999999999999


Q ss_pred             HHhhcCCCCCCEEEEec
Q psy3430          83 LIVRGKMRPGESLLVHA   99 (121)
Q Consensus        83 l~~~~~~~~g~~vli~g   99 (121)
                      +.+..+++ |++|||.|
T Consensus       137 ~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         137 RILRGELR-GRTVVRLA  152 (152)
T ss_dssp             HHHHTCCC-SEEEEECC
T ss_pred             HHHhcCCC-CCEEEEcC
Confidence            88888886 99999975

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7.5e-18  Score=113.13  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=67.2

Q ss_pred             CCCCccCcceEEEE-----------ccCCEEEE-----------------------------------EccCCceeEEEE
Q psy3430          18 GQDCVLGLEFSGRD-----------TKGRRVMG-----------------------------------LVAARSLATTVL   51 (121)
Q Consensus        18 ~~~~~~G~e~~G~V-----------~~Gd~V~~-----------------------------------~~~~g~~~~~~~   51 (121)
                      .+|.++|||++|+|           ++||||..                                   +..+|+|+||++
T Consensus        61 ~~P~i~GHE~~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~  140 (192)
T d1piwa1          61 KMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVR  140 (192)
T ss_dssp             CSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEE
T ss_pred             CCCcCcccccccchhhcccccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEE
Confidence            57899999999998           68999952                                   112489999999


Q ss_pred             eCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEe
Q psy3430          52 ADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH   98 (121)
Q Consensus        52 v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~   98 (121)
                      ++++.++++|+++++++|+.+...+.|||+++ +.+++++||+|+|.
T Consensus       141 v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         141 VHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EEGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             eehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            99999999999999987654444467999999 68999999999986

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.3e-17  Score=107.36  Aligned_cols=79  Identities=20%  Similarity=0.178  Sum_probs=66.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-ccCCceeEEEEeCCCCeEEcCCCCCHHH--HhhcchHHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-VAARSLATTVLADPSFLWEVPAKWTLEE--ASTIPVVYATAYYSLI   84 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~--aa~l~~~~~ta~~~l~   84 (121)
                      .+|.++|||++|+|          ++||||+.. ...|+|+||.+++++.++++|+++++++  +++++....|+++++.
T Consensus        55 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~  134 (147)
T d1qora1          55 SLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEIL  134 (147)
T ss_dssp             SSSBCCCSCEEEEEEEECTTCCSCCTTCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHH
T ss_pred             cceeeeccccccceeeeeeecccccccceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999          799999754 3568999999999999999999998864  4556777788888874


Q ss_pred             hhcCCCCCCEEEE
Q psy3430          85 VRGKMRPGESLLV   97 (121)
Q Consensus        85 ~~~~~~~g~~vli   97 (121)
                      + .++++||+|||
T Consensus       135 ~-~~~~~G~~VLI  146 (147)
T d1qora1         135 E-SRATQGSSLLI  146 (147)
T ss_dssp             H-TTCCCBCCEEE
T ss_pred             H-hCCCCCCEEEe
Confidence            4 68999999998

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.65  E-value=1.4e-16  Score=105.08  Aligned_cols=80  Identities=20%  Similarity=0.119  Sum_probs=67.7

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLW   58 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~   58 (121)
                      ..+|.++|||++|+|          ++||||...                            ..+|+|+||+++++++++
T Consensus        58 ~~~P~i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~  137 (175)
T d1llua1          58 PPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVG  137 (175)
T ss_dssp             CCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSE
T ss_pred             ccCCcCCCCcceEEEEEeCCCccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEE
Confidence            357899999999999          789999742                            124789999999999999


Q ss_pred             EcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEe
Q psy3430          59 EVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH   98 (121)
Q Consensus        59 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~   98 (121)
                      ++|+++|++.++++..++.|+++.+ +... .+|++|||.
T Consensus       138 ~iPd~l~~~~a~~~~~~~~t~~~~~-~~g~-~~G~~VLVl  175 (175)
T d1llua1         138 ILPKNVKATIHPGKLDDINQILDQM-RAGQ-IEGRIVLEM  175 (175)
T ss_dssp             ECCTTCCCCEEEECGGGHHHHHHHH-HTTC-CSSEEEEEC
T ss_pred             ECCCCCChhHHHHHHhHHHHHHHHH-HhCC-CCCCEEEeC
Confidence            9999999988888889999999988 4444 479999984

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.5e-16  Score=104.74  Aligned_cols=58  Identities=31%  Similarity=0.437  Sum_probs=55.5

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++|||+++++++|||++|.+..++++||+|+|+||+|++|++++|+||.+|++|++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~   58 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIG   58 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEee
Confidence            5899999999999999999988899999999999999999999999999999999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.5e-16  Score=103.55  Aligned_cols=58  Identities=36%  Similarity=0.574  Sum_probs=55.4

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+++||++++++.|||++|.+..++++||+|||+||+|++|++++|+||.+|++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~   58 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILG   58 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCccccc
Confidence            5899999999999999999988999999999999999999999999999999999874

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.64  E-value=7.8e-17  Score=108.48  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||||+...                                              
T Consensus        61 ~~p~i~GhE~~G~v~~vG~~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~  140 (199)
T d1cdoa1          61 GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQ  140 (199)
T ss_dssp             SCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEE
T ss_pred             ccccccccccceEEEEEcCCCceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeec
Confidence            46889999999998          8999996531                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEe
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH   98 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~   98 (121)
                        .+|+|+||++++++.++++|+++++++++++.+++.|+++++....+.+.|++|||.
T Consensus       141 ~~~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         141 FLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             GGGTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence              138999999999999999999999999999999999999999888899999999984

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=5e-16  Score=102.10  Aligned_cols=57  Identities=47%  Similarity=0.740  Sum_probs=53.6

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++|||++++++.|||+++ +..++++||+|||+||+|++|++++|+||++|++|++
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~   57 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLA   57 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccccccc
Confidence            58999999999999999999 5589999999999999999999999999999999874

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.60  E-value=4.4e-16  Score=103.09  Aligned_cols=58  Identities=33%  Similarity=0.351  Sum_probs=53.1

Q ss_pred             CCHHHHhhcchHHHHHHHHH---HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSL---IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l---~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++|||++++++.|||+++   .+..+.++||+|||+||+|++|.+++|+||.+|++|++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Via   61 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEA   61 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEE
Confidence            68999999999999999665   45688999999999999999999999999999999874

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=2.9e-18  Score=112.19  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=73.6

Q ss_pred             CCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430          18 GQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL   83 (121)
Q Consensus        18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l   83 (121)
                      .+|.++|+|++|+|        ++||+|+...      .+|+|+||+++|++.++++|+++|+++|++++...+|+|.++
T Consensus        59 ~~~~~~g~e~~G~v~~~~~~~~~~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~  138 (162)
T d1tt7a1          59 EYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVS  138 (162)
T ss_dssp             SCSEECCSEEEEEEEECSSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEEC
T ss_pred             cceeeeeeecccccccccccccccceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45789999999998        7899998753      358999999999999999999999999999999999999876


Q ss_pred             HhhcCCCCCCEEEEecCCchH
Q psy3430          84 IVRGKMRPGESLLVHAGAGGL  104 (121)
Q Consensus        84 ~~~~~~~~g~~vli~ga~g~v  104 (121)
                       ...+...+++|||+|++|++
T Consensus       139 -~~~~~~~~~~Vli~ga~G~v  158 (162)
T d1tt7a1         139 -LEETPGALKDILQNRIQGRV  158 (162)
T ss_dssp             -STTHHHHHHHTTTTCCSSEE
T ss_pred             -HhcCCCCCCEEEEECCcceE
Confidence             33445566889999988763

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.57  E-value=2e-15  Score=100.55  Aligned_cols=58  Identities=26%  Similarity=0.391  Sum_probs=53.9

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEe-cCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH-AGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~-ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++|||+++++++|||++|.+..++++|++++|+ ||+|++|++++|+||++|++||+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~   59 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSIS   59 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEE
Confidence            58999999999999999999999999999988885 77899999999999999999873

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.5e-15  Score=86.68  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=52.3

Q ss_pred             CCHHHHhhcchHHHHHHHHHH---hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLI---VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++||++++.++.|||.+++   +....+++++|||+||+|++|.+++|++|.+|++|++
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~   61 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVA   61 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEE
Confidence            589999999999999988764   4566789999999999999999999999999999873

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2e-15  Score=100.44  Aligned_cols=79  Identities=20%  Similarity=0.217  Sum_probs=64.3

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLW   58 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~   58 (121)
                      ..+|.++|||++|+|          ++||||+...                            .+|+|+||+++++++++
T Consensus        61 ~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~  140 (185)
T d1pl8a1          61 VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCY  140 (185)
T ss_dssp             CSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEE
T ss_pred             CCCCeeeeeeeeeeEEEeccceeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEE
Confidence            346889999999999          7999997531                            24789999999999999


Q ss_pred             EcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEe
Q psy3430          59 EVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH   98 (121)
Q Consensus        59 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~   98 (121)
                      ++|+++++++++.+++  .++++++ +..++++|++|||.
T Consensus       141 ~lP~~~~~~~aa~~pl--~~a~~a~-~~~~~~~G~~VlIg  177 (185)
T d1pl8a1         141 KLPDNVKPLVTHRFPL--EKALEAF-ETFKKGLGLKIMLK  177 (185)
T ss_dssp             ECCTTCGGGEEEEEEG--GGHHHHH-HHHHTTCCSEEEEE
T ss_pred             ECCCCCCHHHHHHHHH--HHHHHHH-HHhCCCCCCEEEEE
Confidence            9999999998876653  4566666 55678999999983

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.56  E-value=1.9e-15  Score=99.11  Aligned_cols=79  Identities=16%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLW   58 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~   58 (121)
                      ..+|.++|||++|+|          ++||+|...                            ..+|+|+||+++++++++
T Consensus        53 ~~~p~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~  132 (171)
T d1rjwa1          53 PKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVV  132 (171)
T ss_dssp             CCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCE
T ss_pred             cccccccCCEEEEEEEEecccccCceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEE
Confidence            457899999999998          789999632                            124899999999999999


Q ss_pred             EcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEec
Q psy3430          59 EVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHA   99 (121)
Q Consensus        59 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~g   99 (121)
                      ++|++++++.| ++. ...++++.+ ..+.+ +|++|||.|
T Consensus       133 ~iP~~~~~e~A-~l~-~~~~~~~~~-~~~~~-~G~tVlViG  169 (171)
T d1rjwa1         133 KIPDNTIIEVQ-PLE-KINEVFDRM-LKGQI-NGRVVLTLE  169 (171)
T ss_dssp             ECCTTCCEEEE-EGG-GHHHHHHHH-HTTCC-SSEEEEECC
T ss_pred             ECCCCCCHHHH-HHH-HHHHHHHHH-HhcCC-CCCEEEEeC
Confidence            99999998655 453 456777776 34555 599999987

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=3.1e-15  Score=98.63  Aligned_cols=55  Identities=47%  Similarity=0.794  Sum_probs=52.2

Q ss_pred             HHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          67 EEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        67 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|||+++++++|||+++.+.+++++||+|||+||+|++|++++|+|+.+|++|++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~   55 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYT   55 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhcccccccee
Confidence            4799999999999999999999999999999999999999999999999998873

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=3.8e-15  Score=95.76  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             CCCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHH
Q psy3430          17 AGQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYS   82 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~   82 (121)
                      ..+|.++|+|++|+|        ++||+|+...      .+|+|+||+++|++.++++|+++|+++||++++++.||+..
T Consensus        55 ~~~p~v~G~e~~G~V~~~~~~~~~~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~  134 (146)
T d1o89a1          55 RNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAII  134 (146)
T ss_dssp             CSSSBCCCSEEEEEEEEECSTTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHH
T ss_pred             cccceeccccccccceeeccCCccceeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            356889999999999        7899998643      35999999999999999999999999999999999998655


Q ss_pred             H
Q psy3430          83 L   83 (121)
Q Consensus        83 l   83 (121)
                      +
T Consensus       135 ~  135 (146)
T d1o89a1         135 N  135 (146)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.53  E-value=1.3e-18  Score=117.67  Aligned_cols=94  Identities=23%  Similarity=0.108  Sum_probs=75.5

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEE-------------------------------------ccCCceeEEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGL-------------------------------------VAARSLATTV   50 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-------------------------------------~~~g~~~~~~   50 (121)
                      .+|.++|||++|+|          ++||||...                                     ..+|+|+||+
T Consensus        59 ~~P~v~GHE~~G~Vv~vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv  138 (201)
T d1kola1          59 QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYV  138 (201)
T ss_dssp             CTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEE
T ss_pred             ccceeccceeeeeeeccccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEE
Confidence            46899999999999          899999621                                     1148999999


Q ss_pred             EeCC--CCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430          51 LADP--SFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC  117 (121)
Q Consensus        51 ~v~~--~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~  117 (121)
                      ++|.  .+++++||+.++.+++++..++.++++++ +..+.+.++    .| +|++|++++|+||++||
T Consensus       139 ~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g-~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         139 LVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FD-AGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HH-HTCSCEEEECTTCSSCC
T ss_pred             EeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----Ee-eCHHHHHHHHHHHHcCC
Confidence            9986  36999999877777778888888888877 445555554    46 89999999999999986

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.53  E-value=7.4e-15  Score=98.39  Aligned_cols=76  Identities=25%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      ++|.++|||++|+|          ++||||+...                                              
T Consensus        55 ~~P~i~GHE~~G~V~~vG~~v~~~~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~  134 (194)
T d1f8fa1          55 PLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVND  134 (194)
T ss_dssp             CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBC
T ss_pred             cCCcccccceEEEeeecCccceeEccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeecc
Confidence            47999999999999          8999996421                                              


Q ss_pred             ---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          42 ---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        42 ---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                         ..|+|+||.++++++++++|++++++++                         +++.| +|++|++++|+++.+|++
T Consensus       135 ~~~~~g~fae~~~v~~~~~~~ip~~i~~~~~-------------------------~~i~g-~g~~g~~aiq~a~~~g~~  188 (194)
T d1f8fa1         135 HFFAQSSFATYALSRENNTVKVTKDFPFDQL-------------------------VKFYA-FDEINQAAIDSRKGITLK  188 (194)
T ss_dssp             CGGGTCCSBSEEEEEGGGEEEECTTCCGGGG-------------------------EEEEE-GGGHHHHHHHHHHTSCSE
T ss_pred             ccccccccceeEEEehHHEEECCCCCCcccE-------------------------EEEeC-cHHHHHHHHHHHHHcCCC
Confidence               0268999999999999999999886543                         34455 899999999999999985


Q ss_pred             E
Q psy3430         119 V  119 (121)
Q Consensus       119 v  119 (121)
                      .
T Consensus       189 ~  189 (194)
T d1f8fa1         189 P  189 (194)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.53  E-value=3.2e-18  Score=112.65  Aligned_cols=93  Identities=14%  Similarity=0.008  Sum_probs=76.3

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEcc-CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLVA-ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV   85 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~   85 (121)
                      ..+|.++|+|++|+|          +.||+|..... +|+|+||+++++++++++|++++  +.+++.+..+|+|+++.+
T Consensus        70 ~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~--~~~a~~~~~~ta~~~l~~  147 (175)
T d1gu7a1          70 TEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQ--SKANGKPNGLTDAKSIET  147 (175)
T ss_dssp             SSCBEECCSCCEEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHH--HHHTTCSCCCCCCCCEEE
T ss_pred             CCCCcccccccccccccccccccccccccceeccccccccccceeeehhhhccCCCccch--hhhhccchHHHHHHHHHH
Confidence            457889999999998          78999986543 58999999999999999999765  444456678899988754


Q ss_pred             -hcCCCCCCEEEEec-CCchHHHHHHHH
Q psy3430          86 -RGKMRPGESLLVHA-GAGGLGQAAISI  111 (121)
Q Consensus        86 -~~~~~~g~~vli~g-a~g~vG~~aiql  111 (121)
                       ..++++||+|||+| |+|++|++++|+
T Consensus       148 ~~~~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         148 LYDGTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             ECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             HhcCCCCCCEEEEECccchhhhheEEeC
Confidence             46799999999998 457899988773

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.51  E-value=4e-15  Score=99.94  Aligned_cols=81  Identities=10%  Similarity=0.057  Sum_probs=70.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|....                                              
T Consensus        59 ~~p~v~GhE~~G~V~~vG~~V~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~  138 (197)
T d2fzwa1          59 CFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILH  138 (197)
T ss_dssp             CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBC
T ss_pred             cccccCCcceeeEEEeecCCceecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceec
Confidence            57899999999999          7899996531                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEe
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH   98 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~   98 (121)
                        .+|+|+||+++++++++++|+++++++++++.+++.|++.++.....-+.+++|||.
T Consensus       139 ~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         139 YMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             CTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             ccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence              127999999999999999999999999999999999999999666666788999874

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.51  E-value=5e-15  Score=99.59  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||+|+...                                              
T Consensus        60 ~~P~v~GHE~~G~V~~vG~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~  139 (202)
T d1e3ia1          60 LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGR  139 (202)
T ss_dssp             CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTE
T ss_pred             ccccccccccceEEeeecCCceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCce
Confidence            46899999999999          7899997532                                              


Q ss_pred             ------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEec
Q psy3430          42 ------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHA   99 (121)
Q Consensus        42 ------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~g   99 (121)
                            .+|+|+||++++++.++++|++++++.++++.+++.+.+.++..   +++||+|.|..
T Consensus       140 ~v~~~~~~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         140 SIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             EEBCCTTTCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHHH---HHTTCCSEEEE
T ss_pred             eeecccccCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEE
Confidence                  02899999999999999999999999888998888888888843   46899987753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.50  E-value=2.1e-14  Score=94.84  Aligned_cols=52  Identities=37%  Similarity=0.505  Sum_probs=49.5

Q ss_pred             hhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          70 STIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        70 a~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++++++++|||++|.+..++++||+|||+||+|++|++++|+||..|++||+
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~   59 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVG   59 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEE
Confidence            5788999999999999999999999999999999999999999999999974

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=1.3e-14  Score=96.56  Aligned_cols=75  Identities=17%  Similarity=0.111  Sum_probs=60.6

Q ss_pred             CCCCccCcceEEEE---------------ccCCEEEEEc------------------------------------cCCce
Q psy3430          18 GQDCVLGLEFSGRD---------------TKGRRVMGLV------------------------------------AARSL   46 (121)
Q Consensus        18 ~~~~~~G~e~~G~V---------------~~Gd~V~~~~------------------------------------~~g~~   46 (121)
                      ++|.++|||++|+|               ++||+|+...                                    .+|+|
T Consensus        57 ~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~  136 (184)
T d1vj0a1          57 PLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCY  136 (184)
T ss_dssp             CSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSS
T ss_pred             ccccccceeeeeeeeEEeccccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeC
Confidence            47899999999998               4699997421                                    15899


Q ss_pred             eEEEEeC-CCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEec
Q psy3430          47 ATTVLAD-PSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHA   99 (121)
Q Consensus        47 ~~~~~v~-~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~g   99 (121)
                      +||++++ +++++++|+++++++      ++.+|++++ +.+++++||+|+|+.
T Consensus       137 ae~~~v~~~~~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         137 SSHIVLDPETDVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILYP  183 (184)
T ss_dssp             BSEEEECTTCCEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEEC
T ss_pred             cCcEEechhHcEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEee
Confidence            9999995 689999999998653      234677787 778999999999984

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=4.8e-14  Score=91.66  Aligned_cols=56  Identities=30%  Similarity=0.439  Sum_probs=52.1

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|++++|++++++.|||+++ +..++++||+|+|.| +|++|++++|++|.+|++|++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~G-aG~vG~~~~~~ak~~G~~Vi~   56 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISG-IGGLGHVAVQYARAMGLHVAA   56 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEee-ccccHHHHHHHHHHcCCccce
Confidence            58999999999999999999 568999999999998 699999999999999998873

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.48  E-value=1.7e-14  Score=94.96  Aligned_cols=78  Identities=19%  Similarity=0.118  Sum_probs=59.4

Q ss_pred             CCCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCC-eE
Q psy3430          17 AGQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSF-LW   58 (121)
Q Consensus        17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~-~~   58 (121)
                      ..+|.++|||++|+|          ++||+|....                           .+|+|+||+++++.+ ++
T Consensus        60 ~~~P~v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~  139 (177)
T d1jvba1          60 VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMY  139 (177)
T ss_dssp             CCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEE
T ss_pred             cCCCccccceEEEEEeeeccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEE
Confidence            467999999999999          7899996532                           248999999998765 55


Q ss_pred             EcCCCCCHHHHhhc-chHHHHHHHHHHhhcCCCCCCEEEE
Q psy3430          59 EVPAKWTLEEASTI-PVVYATAYYSLIVRGKMRPGESLLV   97 (121)
Q Consensus        59 ~~p~~~~~~~aa~l-~~~~~ta~~~l~~~~~~~~g~~vli   97 (121)
                      ++|+. ++.+++++ ..++.++++++ +..++ .|++|||
T Consensus       140 ~~~~~-~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         140 KLRRV-KPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             ECSSS-CCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             ECCCC-ChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            55554 44455444 56889999999 66666 5899987

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=4.5e-14  Score=93.30  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=50.3

Q ss_pred             CCHHHHhhcchHHHHHHHHHH---hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLI---VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+.||+++++++.|||++++   +....+++++|||+||+|++|++++|+||.+|++||+
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via   61 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVA   61 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEE
Confidence            588999999999999997763   3445556779999999999999999999999999874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=90.48  Aligned_cols=55  Identities=24%  Similarity=0.355  Sum_probs=50.5

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++++||.++|++.|+|+++.+.+++++||+|+|+| +|++|++++|+++++|+ +|+
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi   57 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRII   57 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEec-chhHHHHHHHHHHHHhcCceE
Confidence            57899999999999999998899999999999999 58999999999999997 454

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.6e-13  Score=89.46  Aligned_cols=56  Identities=27%  Similarity=0.372  Sum_probs=50.8

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++.+.||++.|++.|+|+++ +..++++||+|+|.| +|++|++++|+||.+|++|++
T Consensus         1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~G-aG~vG~~a~q~ak~~G~~vi~   56 (168)
T d1piwa2           1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVG-LGGIGSMGTLISKAMGAETYV   56 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEEC-CCCcchhHHHHhhhccccccc
Confidence            35678899999999999999 568999999999999 599999999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2.2e-13  Score=88.77  Aligned_cols=57  Identities=28%  Similarity=0.384  Sum_probs=51.4

Q ss_pred             CCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          63 KWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        63 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ..+++++|++.|+..|+|+++ +..++++||+|+|+| +|++|++++|+||++|+++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~G-aG~vG~~a~qlak~~Ga~~i~   59 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVVA   59 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEec-cchHHHHHHHHhhcccccchh
Confidence            346788899999999999999 679999999999998 699999999999999998763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.42  E-value=2e-13  Score=88.55  Aligned_cols=55  Identities=35%  Similarity=0.471  Sum_probs=51.6

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+++||++++++.|+|+++ +..++++||+|+|+| +|++|++++|+++..|++|+
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~   55 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYG-IGGLGHVAVQYAKAMGLNVV   55 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEEC-CSTTHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEee-cccchhhhhHHHhcCCCeEe
Confidence            58999999999999999999 678899999999998 69999999999999999876

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=8.5e-14  Score=92.36  Aligned_cols=56  Identities=21%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCC--CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPG--ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+.+. +++++++|||++|++..++++|  |+|||+||+|++|++++|+||.+|++++
T Consensus         2 ~~~~~g-alg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~v   59 (187)
T d1vj1a2           2 LSYFLG-AIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRV   59 (187)
T ss_dssp             GGGGGT-TTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEE
T ss_pred             ccHHHH-HhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcce
Confidence            455554 5888999999999999999988  8899999999999999999999999543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.39  E-value=6.6e-13  Score=87.28  Aligned_cols=55  Identities=25%  Similarity=0.355  Sum_probs=51.3

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++++++.++|++.|+|+++.+.+++++||+|+|+| +|++|++++|++|++|+ +|+
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi   57 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRII   57 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHhCCceee
Confidence            57889999999999999998899999999999998 79999999999999999 554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.39  E-value=6.7e-13  Score=86.92  Aligned_cols=55  Identities=25%  Similarity=0.358  Sum_probs=50.9

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++++||.++|++.|+|+++.+.+++++||+|+|+| +|++|.+++|+++..|+ +|+
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~G-aGG~G~~~~~~~~~~g~~~Vi   57 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARII   57 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEEC-CCCcHHHHHHHHHHcCCceEE
Confidence            57899999999999999998999999999999999 48899999999999986 665

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.37  E-value=8.9e-13  Score=85.79  Aligned_cols=56  Identities=29%  Similarity=0.442  Sum_probs=52.0

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +|+.|||++++++.|||+++ +..++++||+|+|+|++|++|++++|+++.+|+ +|+
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~   57 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATII   57 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeeccccccccccc
Confidence            58899999999999999999 678999999999999889999999999999996 665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.37  E-value=5.4e-13  Score=87.61  Aligned_cols=54  Identities=28%  Similarity=0.375  Sum_probs=49.8

Q ss_pred             HHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          66 LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        66 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      |.||+.+.|++.|+|+++.+.+++++||+|+|+| +|++|++++|++|++|+ +|+
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi   56 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRII   56 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceee
Confidence            4578999999999999998899999999999999 69999999999999998 565

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.37  E-value=5.9e-13  Score=87.46  Aligned_cols=55  Identities=24%  Similarity=0.292  Sum_probs=50.9

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +|+++|+.+++++.|+|+++ +.+++++||+|+|+| +|++|++++|+||.+|+ +|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi   56 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIG-IGAVGLMGIAGAKLRGAGRII   56 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEE
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEc-CCcchhhhhhhhhcccccccc
Confidence            57899999999999999998 779999999999998 69999999999999998 565

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=85.74  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=52.1

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVYT  121 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi~  121 (121)
                      ++++|+.++|++.|+|+++.+.+++++||+|+|+| +|++|++++|+++++|+ +||+
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~   59 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIG   59 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceEEE
Confidence            58899999999999999998899999999999998 79999999999999996 7763

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=1.8e-12  Score=85.31  Aligned_cols=55  Identities=25%  Similarity=0.312  Sum_probs=50.1

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      |++.+|.+.+++.|||+++.+..++++||+|||+| +|++|++++|+|+++|+ +|+
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~G-aG~iG~~~~~~ak~~Ga~~Vi   57 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVI   57 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEEC-CCccchhheeccccccccccc
Confidence            45678899999999999998889999999999999 59999999999999998 675

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.29  E-value=2.6e-12  Score=84.12  Aligned_cols=55  Identities=22%  Similarity=0.243  Sum_probs=50.4

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++.++.++|++.|+|+++.+..++++||+|+|.| +|++|++++|++|++|++++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G-~G~iG~~~~~~ak~~g~~~v   56 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASII   56 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEE
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeC-CCHHHhhhhhccccccccee
Confidence            56789999999999999998999999999999999 59999999999999999543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.27  E-value=5.6e-12  Score=81.86  Aligned_cols=55  Identities=24%  Similarity=0.289  Sum_probs=48.8

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +|+++|| +..++.++|+++ +..++++||+|+|+| +|++|++++|++|++|++|++
T Consensus         1 VS~e~Aa-l~ePla~a~~a~-~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~   55 (170)
T d1e3ja2           1 VSLEEGA-LLEPLSVGVHAC-RRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVC   55 (170)
T ss_dssp             SCHHHHH-THHHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHH-HHHHHHHHHHHH-HHhCCCCCCEEEEEc-ccccchhhHhhHhhhcccccc
Confidence            4788885 456889999999 778999999999998 899999999999999999874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.26  E-value=1e-11  Score=80.95  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=50.5

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++++||.++|++.|+|+++.+.+++++||+|+|+| +|++|.+++|+++..|+ +|+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi   57 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRII   57 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEe-cCCccchHHHHHHHHhhchhe
Confidence            57899999999999999998899999999999998 78999999999999987 565

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.19  E-value=4e-12  Score=84.92  Aligned_cols=78  Identities=18%  Similarity=0.246  Sum_probs=58.9

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      ++|.++|||++|+|          ++||+|+...                                              
T Consensus        60 ~~P~i~GHE~~G~Vv~vG~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~  139 (198)
T d2jhfa1          60 PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHH  139 (198)
T ss_dssp             CSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBC
T ss_pred             ccceecccceeEEEEecCccccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceecc
Confidence            46899999999999          8999996421                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEe
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVH   98 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~   98 (121)
                        ..|+|+||+++++.+++++|+.++++.+++...+..+...+.   ..+++||+|.|.
T Consensus       140 ~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~g~---~~l~~G~~VaVi  195 (198)
T d2jhfa1         140 FLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINEGF---DLLRSGESIRTI  195 (198)
T ss_dssp             STTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHH---HHHHTTCCSEEE
T ss_pred             CCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhhCC---ceeeCCCEEEEE
Confidence              027899999999999999999998877665544443333332   236789998775

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.18  E-value=2.3e-11  Score=79.20  Aligned_cols=54  Identities=24%  Similarity=0.344  Sum_probs=47.9

Q ss_pred             CHHHHhhcchHHHHHHHHHHhhc-CCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430          65 TLEEASTIPVVYATAYYSLIVRG-KMRPGESLLVHAGAGGLGQAAISIALHMGCTV  119 (121)
Q Consensus        65 ~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v  119 (121)
                      .+.++|+++++++|||+++.+.. .+++||+|+|.| +|++|++++|+++++|+++
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~G-aG~vG~~~~~~a~~~g~~~   59 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVMTPAT   59 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCE
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeC-CChHHHHHHHHHHhhcCcc
Confidence            46788999999999999997765 589999999998 6999999999999999843

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=1.1e-11  Score=80.84  Aligned_cols=48  Identities=29%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             hHHHHHHH---HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          74 VVYATAYY---SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        74 ~~~~ta~~---~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +++.|||.   +|.+....+++++|||+||+|++|++++|+||++|++||+
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Via   53 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVA   53 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEE
Confidence            45567764   4556667778999999999999999999999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.7e-11  Score=77.60  Aligned_cols=54  Identities=28%  Similarity=0.383  Sum_probs=48.0

Q ss_pred             CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      +|+++|| +..++.++|+++ ++.++++||+|+|+| +|++|++++|+++.+|+ +|+
T Consensus         1 vS~e~Aa-l~epla~a~~a~-~~~~~~~gd~VlI~G-~G~iG~~~~~~a~~~G~~~Vi   55 (171)
T d1pl8a2           1 VTFEEGA-LIEPLSVGIHAC-RRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVV   55 (171)
T ss_dssp             SCHHHHH-HHHHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHH-HHHHHHHHHHHH-HHhCCCCCCEEEEEC-CCccHHHHHHHHHHcCCceEE
Confidence            4788886 557889999998 678999999999998 69999999999999999 676

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.10  E-value=1.4e-10  Score=77.24  Aligned_cols=52  Identities=27%  Similarity=0.429  Sum_probs=47.7

Q ss_pred             HHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430          67 EEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY  120 (121)
Q Consensus        67 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi  120 (121)
                      ++.++|+..+.|+|+++ +.+++++||+|+|+| +|++|++++|+++++|+ +|+
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi   54 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVI   54 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEEC-cCHHHHHHHHHHHhhccccee
Confidence            57789999999999998 679999999999998 69999999999999998 665

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=2.5e-10  Score=75.07  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc------------------------------------cCCceeEEEE
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV------------------------------------AARSLATTVL   51 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~------------------------------------~~g~~~~~~~   51 (121)
                      .+|.++|||++|+|          ++||+|....                                    .+|+|+||++
T Consensus        53 ~~P~i~GhE~~G~V~~vG~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~  132 (179)
T d1uufa1          53 VYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIV  132 (179)
T ss_dssp             CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEE
T ss_pred             cccccccccccccchhhccccccCCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEE
Confidence            57899999999999          7999995211                                    1378999999


Q ss_pred             eCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCC
Q psy3430          52 ADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMR   90 (121)
Q Consensus        52 v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~   90 (121)
                      +++++++++|+.....   .+..++.++++++ ..+.++
T Consensus       133 v~~~~~~~ip~~~~~~---~~a~~l~~a~~a~-~~a~v~  167 (179)
T d1uufa1         133 VHERYVLRIRVADIEM---IRADQINEAYERM-LRGDVK  167 (179)
T ss_dssp             EEGGGCEECCCCCEEE---ECGGGHHHHHHHH-HTTCSS
T ss_pred             echHHEEECCCCCcCh---hHhchhHHHHHHH-HHhCcc
Confidence            9999999999664322   2334667888888 555555

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.95  E-value=7e-11  Score=77.64  Aligned_cols=57  Identities=19%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc------------------------------cCCceeEEEEeCC--C
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV------------------------------AARSLATTVLADP--S   55 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~------------------------------~~g~~~~~~~v~~--~   55 (121)
                      .+|.++|||++|+|          ++||||....                              .+|+|+||+++|.  .
T Consensus        52 ~~P~i~GhE~~G~V~~vG~~v~~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~  131 (177)
T d1jqba1          52 RKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADM  131 (177)
T ss_dssp             CSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHH
T ss_pred             CCCccCcceeeEEeeecccccceecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhC
Confidence            46899999999999          7899996321                              2489999999996  4


Q ss_pred             CeEEcCCCCCHHHHhhcch
Q psy3430          56 FLWEVPAKWTLEEASTIPV   74 (121)
Q Consensus        56 ~~~~~p~~~~~~~aa~l~~   74 (121)
                      +++++|+++++++++....
T Consensus       132 ~l~~iP~~~~~~~~~~~~~  150 (177)
T d1jqba1         132 NLAILPKDVDLSKLVTHVY  150 (177)
T ss_dssp             HCEECCTTSCGGGGEEEEE
T ss_pred             eEEECCCCcchHHHHHHHH
Confidence            6899999999987765443

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=98.87  E-value=3.5e-09  Score=70.40  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430          18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------   41 (121)
Q Consensus        18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------   41 (121)
                      .+|.++|||++|+|          ++||||....                                              
T Consensus        60 ~~P~i~GHE~~G~Vv~~G~~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~  139 (198)
T d1p0fa1          60 KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYN  139 (198)
T ss_dssp             CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBC
T ss_pred             ccccccceeeeeeeeecCcccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccc
Confidence            46999999999999          7899996422                                              


Q ss_pred             --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHH
Q psy3430          42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQ  106 (121)
Q Consensus        42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~  106 (121)
                        .+|+|+||+++++..++++|++++.+.++...+...          .+.+++.|+|.| +|++|+
T Consensus       140 ~~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~----------~v~~~~~vlv~G-~G~iGl  195 (198)
T d1p0fa1         140 LMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLD----------QINKAFELLSSG-QGVRSI  195 (198)
T ss_dssp             STTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGG----------GHHHHHHHTTTS-SCSEEE
T ss_pred             cCCCccceeeEEecHHHEEECCCCCCHHHHHHhhcchh----------hcCCCCEEEEEC-CCcceE
Confidence              126899999999999999999999877655444332          233445577777 676654

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.82  E-value=5.6e-09  Score=66.47  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             ccCcceEEEE--------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHH-----HHhhcchHHHH-HHHHHHhhc
Q psy3430          22 VLGLEFSGRD--------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE-----EASTIPVVYAT-AYYSLIVRG   87 (121)
Q Consensus        22 ~~G~e~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~-----~aa~l~~~~~t-a~~~l~~~~   87 (121)
                      .+..+.+|+|        ++||+|++.   ++|+||.+++.+.+.++|++.+..     ..+++....+| ||..+.+. 
T Consensus        62 ~~~g~~vg~Vv~S~~~~f~~GD~V~g~---~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~~-  137 (147)
T d1v3va1          62 VMMGQQVARVVESKNSAFPAGSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLNG-  137 (147)
T ss_dssp             BCCCCEEEEEEEESCTTSCTTCEEEEC---CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHTT-
T ss_pred             ccccceEEEEEEeCCCcccCCCEEEEc---cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhhCC-
Confidence            4555778887        899999875   679999999999999998765432     34567777777 45466444 


Q ss_pred             CCCCCCEEEE
Q psy3430          88 KMRPGESLLV   97 (121)
Q Consensus        88 ~~~~g~~vli   97 (121)
                       .+.||+|++
T Consensus       138 -~k~Getvv~  146 (147)
T d1v3va1         138 -ANLGKAVVT  146 (147)
T ss_dssp             -CCSSEEEEE
T ss_pred             -CCCCCEEEe
Confidence             567999987

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.93  E-value=0.0015  Score=41.91  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      --+|++++|+||+|++|..+++.+...|++|+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~   51 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV   51 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchh
Confidence            34799999999999999999999999999886

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0011  Score=44.77  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      -+|+++||+||++|+|.+.++.....|++|+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil   43 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVV   43 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            36899999999999999999999999999873

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.51  E-value=0.0014  Score=44.49  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=28.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+++||+||++++|.+.++.+...|++|+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vi   53 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCV   53 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEE
Confidence            579999999999999999999999999987

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.39  E-value=0.0015  Score=44.07  Aligned_cols=30  Identities=27%  Similarity=0.432  Sum_probs=28.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|+++||+||++++|.+.++.+...|++|+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vv   46 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVI   46 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEE
Confidence            589999999999999999999999999986

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0027  Score=43.57  Aligned_cols=33  Identities=30%  Similarity=0.559  Sum_probs=29.4

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .-+|+++||+||++++|.+.++.+...|++|++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi   41 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVI   41 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            347899999999999999999999999999863

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0035  Score=35.53  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=26.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|++|+|.| .|..|+++++++...|++|+
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~~v~   32 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLARGVTPR   32 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTCCCE
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEE
Confidence            478899999 79999999999999999876

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.029  Score=35.24  Aligned_cols=44  Identities=16%  Similarity=0.208  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          77 ATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        77 ~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .+.+.++.+..+ .-.|++++|.| .|-+|+..++.++.+|++|++
T Consensus         8 ~S~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v   52 (163)
T d1li4a1           8 ESLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRGFGARVII   52 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             hhHHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHhCCCeeEe
Confidence            445555555444 45899999999 999999999999999999874

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.027  Score=35.10  Aligned_cols=39  Identities=28%  Similarity=0.447  Sum_probs=30.4

Q ss_pred             HHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          81 YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        81 ~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+|.+..-..+|++|+|.| +||.+++++..+..+|+++.
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGGaarai~~al~~~g~~i~   45 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIG-AGGASRGVLLPLLSLDCAVT   45 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHhcccceEEE
Confidence            3454444446789999999 79999999988888898754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.57  E-value=0.048  Score=36.16  Aligned_cols=30  Identities=20%  Similarity=0.349  Sum_probs=28.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|+|.| .|.+|..+++++...|++|+
T Consensus        29 l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv   58 (242)
T d1v9la1          29 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVI   58 (242)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            4789999999 99999999999999999986

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.52  E-value=0.026  Score=36.13  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=25.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .-+|+|.| +|-+|+.|++.|+.+|++|.
T Consensus        29 pa~VvViG-aGvaG~~Aa~~A~~lGA~V~   56 (183)
T d1l7da1          29 PARVLVFG-VGVAGLQAIATAKRLGAVVM   56 (183)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHHcCCEEE
Confidence            45899999 89999999999999999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.25  E-value=0.032  Score=35.15  Aligned_cols=30  Identities=20%  Similarity=0.364  Sum_probs=26.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +.-+|+|.| +|-+|+.|++.|+.+|++|.+
T Consensus        31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~   60 (168)
T d1pjca1          31 KPGKVVILG-GGVVGTEAAKMAVGLGAQVQI   60 (168)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEEC-CChHHHHHHHHHhhCCCEEEE
Confidence            346899999 899999999999999998753

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.71  E-value=0.043  Score=35.43  Aligned_cols=30  Identities=27%  Similarity=0.475  Sum_probs=27.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.+|.|.| .|.+|..+++++...|++|++
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv   55 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLV   55 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            689999999 999999999999999999863

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.53  E-value=0.12  Score=29.84  Aligned_cols=35  Identities=11%  Similarity=0.045  Sum_probs=29.7

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +..+..++++|+|.| +|.+|.=.++.++.+|.+|.
T Consensus        15 ~~l~~~~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt   49 (121)
T d1mo9a2          15 EELDYEPGSTVVVVG-GSKTAVEYGCFFNATGRRTV   49 (121)
T ss_dssp             HHCCSCCCSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHhhCCCCEEEEEC-CCHHHHHHHHHHHhcchhhe
Confidence            445677899999999 89999999999999998764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.44  E-value=0.053  Score=37.12  Aligned_cols=31  Identities=13%  Similarity=0.096  Sum_probs=27.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ....+|||+||+|-+|..+++.+...|.+|+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~   43 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVI   43 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEE
Confidence            3567899999999999999999999998876

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.057  Score=31.49  Aligned_cols=32  Identities=22%  Similarity=0.482  Sum_probs=27.1

Q ss_pred             CCCC-CEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          89 MRPG-ESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        89 ~~~g-~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +.++ .+|.|.| +|-+|++.++-|+.+|.++++
T Consensus         7 ~~~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v   39 (111)
T d1kjqa2           7 LRPAATRVMLLG-SGELGKEVAIECQRLGVEVIA   39 (111)
T ss_dssp             TSTTCCEEEEES-CSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEE
Confidence            4444 5699999 899999999999999998763

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.34  E-value=0.045  Score=37.17  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.++||+||+|-+|+.++..+...|.+|+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~   44 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVV   44 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEE
Confidence            36799999999999999999988998876

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.34  E-value=0.043  Score=35.26  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|+..+++++.+|++|+
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~fg~~V~   70 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVI   70 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCeEEEec-ccccchhHHHhHhhhccccc
Confidence            478999999 99999999999999999986

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.25  E-value=0.053  Score=31.37  Aligned_cols=29  Identities=14%  Similarity=0.295  Sum_probs=26.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|||.| .|.+|..-++.+...|++|+
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~   39 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEAGARLT   39 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence            478999999 89999999999999999876

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.14  E-value=0.11  Score=34.67  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      ++.+...--+|.+|.|.| .|.+|..+++.+...|++|++
T Consensus        26 ~~~~~~~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gakvva   64 (255)
T d1bgva1          26 VMKHENDTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVT   64 (255)
T ss_dssp             HHHHTTCCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEE
Confidence            343333334789999999 899999999999999999873

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.12  E-value=0.14  Score=31.92  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=34.7

Q ss_pred             HHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          78 TAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        78 ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      +.+-++.+..+ +-.|++++|.| -|-+|+-.++-+|.+|++|++
T Consensus         8 S~~d~i~r~t~~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V   51 (163)
T d1v8ba1           8 SLPDGLMRATDFLISGKIVVICG-YGDVGKGCASSMKGLGARVYI   51 (163)
T ss_dssp             HHHHHHHHHHCCCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEE
T ss_pred             hHHHHHHHHhCceecCCEEEEec-ccccchhHHHHHHhCCCEEEE
Confidence            34445545544 46899999999 999999999999999999874

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.09  E-value=0.25  Score=32.35  Aligned_cols=30  Identities=17%  Similarity=0.181  Sum_probs=27.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+|+|.| .|.+|..+++++...|++++
T Consensus        37 l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv   66 (230)
T d1leha1          37 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLV   66 (230)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            4689999999 99999999999999999986

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.06  E-value=0.077  Score=32.87  Aligned_cols=32  Identities=19%  Similarity=0.429  Sum_probs=28.0

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGC  117 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~  117 (121)
                      +..++.++.+|+|.| +||.+++++..++..|+
T Consensus        10 ~~~~~~~~~~vlIlG-aGGaarai~~aL~~~g~   41 (167)
T d1npya1          10 EKYHLNKNAKVIVHG-SGGMAKAVVAAFKNSGF   41 (167)
T ss_dssp             HHTTCCTTSCEEEEC-SSTTHHHHHHHHHHTTC
T ss_pred             HHcCCCCCCeEEEEC-CCHHHHHHHHHHHHCCC
Confidence            556677889999999 79999999999999997

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.058  Score=34.86  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC--EEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGC--TVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~--~vi  120 (121)
                      .+.+|||+||+|-+|..+++.+...|.  +|+
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~   44 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVT   44 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEE
Confidence            346899999999999999998877774  454

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.69  E-value=0.061  Score=34.49  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.+|.|.| .|.+|+.++++++.+|++|++
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~   73 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIA   73 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             cceeeeeee-cccccccccccccccceeeec
Confidence            468999999 999999999999999999863

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.65  E-value=0.068  Score=34.16  Aligned_cols=29  Identities=34%  Similarity=0.407  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|+..+++++.+|++|+
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~   76 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAFGFNVL   76 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             eCceEEEec-cccccccceeeeecccccee
Confidence            578999999 99999999999999999986

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.083  Score=33.34  Aligned_cols=31  Identities=29%  Similarity=0.155  Sum_probs=27.4

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .....+|+|.| +|+.|+.++..+..+|.+|+
T Consensus        40 ~~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vt   70 (179)
T d1ps9a3          40 AVQKKNLAVVG-AGPAGLAFAINAAARGHQVT   70 (179)
T ss_dssp             CSSCCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCCcEEEEEC-ccHHHHHHHHHHHhhccceE
Confidence            35578999999 89999999999999999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.05  Score=29.89  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=24.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++|.|.| +|-+|++.++-++.+|.+++
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~LG~~v~   28 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPLGIAVW   28 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGGTEEEE
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCEEE
Confidence            4788999 89999999999999999875

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.31  E-value=0.085  Score=36.02  Aligned_cols=30  Identities=13%  Similarity=0.294  Sum_probs=27.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      .|.+|+|.| .|.||..+++.+...|++|++
T Consensus        35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~   64 (293)
T d1hwxa1          35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVA   64 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence            578999999 899999999999999999863

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.27  E-value=0.26  Score=32.32  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=28.9

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHH-HHCCCEEe
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIA-LHMGCTVY  120 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla-~~~G~~vi  120 (121)
                      ++.....--+|.+|.|.| .|.||..+++.+ +..|++++
T Consensus        21 ~~~~~~~~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv   59 (234)
T d1b26a1          21 AMDVLGIDPKKATVAVQG-FGNVGQFAALLISQELGSKVV   59 (234)
T ss_dssp             HHHHTTCCTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEE
T ss_pred             HHHHcCCCcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceE
Confidence            343333334689999999 999999999877 67799886

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.19  E-value=0.095  Score=33.07  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=27.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|.|.| .|.+|...+++++.+|++|+
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~   69 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVR   69 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEE
T ss_pred             cCceEEEec-cccccccceeeeeccccccc
Confidence            578999999 89999999999999999986

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.92  E-value=0.22  Score=28.99  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=28.6

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +...-.++++|+|.| +|.+|.-+++.++.+|.+|.
T Consensus        23 ~~~~~~~~k~vvViG-gG~iG~E~A~~l~~~g~~Vt   57 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVT   57 (123)
T ss_dssp             HHHTCTTCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHhhccCCCEEEEEC-ChHHHHHHHHHhhccceEEE
Confidence            333445678999999 89999999999999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.67  E-value=0.083  Score=31.96  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=26.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.+|||.| +|.+|.--++.+...|++|+
T Consensus        12 ~gkrvLViG-gG~va~~ka~~Ll~~GA~Vt   40 (150)
T d1kyqa1          12 KDKRILLIG-GGEVGLTRLYKLMPTGCKLT   40 (150)
T ss_dssp             TTCEEEEEE-ESHHHHHHHHHHGGGTCEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            588999999 79999999999999999876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.26  E-value=0.16  Score=32.61  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=26.9

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+..++|+|.| +|..|+.++..++..|.+|+
T Consensus        46 ~~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~   76 (233)
T d1djqa3          46 TKNKDSVLIVG-AGPSGSEAARVLMESGYTVH   76 (233)
T ss_dssp             CSSCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCceEEEEc-ccHHHHHHHHHHHHhcccee
Confidence            34678999999 89999999999999998765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.98  E-value=0.14  Score=33.48  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=26.5

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ......+|+|.| +|..|+.++..++..|.+|.
T Consensus        26 ~~~~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~   57 (370)
T d2iida1          26 ATSNPKHVVIVG-AGMAGLSAAYVLAGAGHQVT   57 (370)
T ss_dssp             CCSSCCEEEEEC-CBHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEE
Confidence            344557899999 89999999988888898875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.89  E-value=0.21  Score=30.91  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=27.2

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +|.+.....++.+|+|.| +|+.+.+++..+...+.+++
T Consensus         8 ~l~~~~~~~~~k~vlIlG-aGGaarai~~aL~~~~~~i~   45 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILG-AGGATKGVLLPLLQAQQNIV   45 (171)
T ss_dssp             HHHHTTCCCTTCEEEEEC-CSHHHHTTHHHHHHTTCEEE
T ss_pred             HHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHcccCceee
Confidence            343333345788999999 79999999887776555654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.62  E-value=0.27  Score=28.45  Aligned_cols=32  Identities=13%  Similarity=0.338  Sum_probs=27.3

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +++..++|+|.| +|.+|.-.++.++.+|.+|.
T Consensus        18 ~l~~p~~v~IiG-gG~iG~E~A~~l~~~g~~Vt   49 (117)
T d1onfa2          18 NIKESKKIGIVG-SGYIAVELINVIKRLGIDSY   49 (117)
T ss_dssp             TCCCCSEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             ccCCCCEEEEEC-CchHHHHHHHHHHhccccce
Confidence            455568999999 89999999999999999875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.38  Score=29.84  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=26.6

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      ++.+...--++.+|+|.| +|+.+.+++..+...|++
T Consensus         8 ~l~~~~~~l~~k~vlIlG-aGGaarai~~al~~~g~~   43 (182)
T d1vi2a1           8 AIKESGFDIKGKTMVLLG-AGGASTAIGAQGAIEGLK   43 (182)
T ss_dssp             HHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCS
T ss_pred             HHHHcCCCcCCCEEEEEC-CcHHHHHHHHHHhhcCCc
Confidence            443332223678999999 799999999888888873

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=0.6  Score=28.97  Aligned_cols=50  Identities=18%  Similarity=0.062  Sum_probs=38.2

Q ss_pred             hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|++....+..|.+..---.|.+++|.|.+.-+|.=+..+....|++|+
T Consensus        16 ~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt   65 (166)
T d1b0aa1          16 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT   65 (166)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE
T ss_pred             CCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhcccc
Confidence            45666555555664433334799999999888899999999999999886

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.04  E-value=0.18  Score=33.95  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ...+.+..++++|++||=.| + |.|..++.+|+..|++|+
T Consensus        51 ~~~~~~~l~l~~G~~VLDiG-C-G~G~~a~~~a~~~g~~v~   89 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVG-C-GWGATMMRAVEKYDVNVV   89 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEET-C-TTSHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHcCCCCCCEEEEec-C-cchHHHHHHHhcCCcceE
Confidence            34555888999999999998 3 568899999999999885

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.41  E-value=0.22  Score=31.28  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++.|.| .|.+|+..+++++.+|++|+
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~fg~~v~   71 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAAFGAYVV   71 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             cceeeeecc-ccchhHHHHHHhhhccceEE
Confidence            578899999 89999999999999999886

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.81  Score=28.43  Aligned_cols=50  Identities=18%  Similarity=0.115  Sum_probs=38.2

Q ss_pred             hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -+|+.....+..|.+..---.|.+|+|.|.+.-+|.=+..+....|++|+
T Consensus        18 ~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt   67 (170)
T d1a4ia1          18 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT   67 (170)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceE
Confidence            45666665666664433334799999999888999999999999999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.25  E-value=0.32  Score=27.82  Aligned_cols=28  Identities=25%  Similarity=0.264  Sum_probs=25.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++|.| +|.+|.-+++.+..+|.+|.
T Consensus        22 p~~v~IiG-gG~ig~E~A~~l~~~G~~Vt   49 (117)
T d1ebda2          22 PKSLVVIG-GGYIGIELGTAYANFGTKVT   49 (117)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEEC-CCccceeeeeeecccccEEE
Confidence            37899999 89999999999999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.13  E-value=0.33  Score=28.03  Aligned_cols=28  Identities=29%  Similarity=0.230  Sum_probs=25.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          92 GESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        92 g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++|.| +|.+|.=.++..+.+|.+|.
T Consensus        22 p~~i~IiG-~G~ig~E~A~~l~~~G~~Vt   49 (119)
T d3lada2          22 PGKLGVIG-AGVIGLELGSVWARLGAEVT   49 (119)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEEC-CChHHHHHHHHHHHcCCceE
Confidence            48899999 89999999999999999875

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.88  E-value=0.29  Score=30.70  Aligned_cols=29  Identities=28%  Similarity=0.377  Sum_probs=26.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.+|.|.| .|.+|...+++++.+|++|+
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~   71 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGMYVY   71 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             cceEEEEee-cccchhhhhhhcccccceEe
Confidence            578999999 99999999999999999986

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.55  E-value=0.44  Score=28.09  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .++++++++|.| +|.+|.-++..++.+|.+|.
T Consensus        31 ~~~~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vt   62 (133)
T d1q1ra2          31 QLIADNRLVVIG-GGYIGLEVAATAIKANMHVT   62 (133)
T ss_dssp             TCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             hhccCCEEEEEC-CchHHHHHHHHHHhhCccee
Confidence            456789999999 89999999999999998764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.54  E-value=0.51  Score=27.35  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=27.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++++++|.| +|.+|.=++..++.+|.+|.
T Consensus        27 ~~~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vt   57 (121)
T d1d7ya2          27 LRPQSRLLIVG-GGVIGLELAATARTAGVHVS   57 (121)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             hhcCCeEEEEC-cchhHHHHHHHhhcccceEE
Confidence            56779999999 89999999999999998775

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.52  E-value=0.32  Score=27.94  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=24.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++|.| +|.+|.-+++.++.+|.+|.
T Consensus        22 ~~vvIiG-gG~ig~E~A~~l~~~G~~Vt   48 (116)
T d1gesa2          22 ERVAVVG-AGYIGVELGGVINGLGAKTH   48 (116)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEC-CChhhHHHHHHhhccccEEE
Confidence            6899999 89999999999999999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.26  E-value=0.34  Score=28.17  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=24.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++|.| +|.+|.=.++++..+|.+|.
T Consensus        24 ~~~vIiG-~G~ig~E~A~~l~~lG~~Vt   50 (122)
T d1v59a2          24 KRLTIIG-GGIIGLEMGSVYSRLGSKVT   50 (122)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEEC-CCchHHHHHHHHHhhCccee
Confidence            6899999 89999999999999999875

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.87  E-value=0.19  Score=32.55  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=26.5

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +...+++|++||..|  ++.|..++-+++..|.+|+
T Consensus        72 ~~L~l~~g~~VLeIG--sGsGY~taila~l~g~~V~  105 (215)
T d1jg1a_          72 EIANLKPGMNILEVG--TGSGWNAALISEIVKTDVY  105 (215)
T ss_dssp             HHHTCCTTCCEEEEC--CTTSHHHHHHHHHHCSCEE
T ss_pred             HhhccCccceEEEec--CCCChhHHHHHHhhCceeE
Confidence            667899999999998  4557777788877776554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=87.84  E-value=0.32  Score=30.73  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .|.++.|.| .|.+|+..+++++.+|.+|+
T Consensus        46 ~g~tvgIiG-~G~IG~~va~~l~~fg~~v~   74 (191)
T d1gdha1          46 DNKTLGIYG-FGSIGQALAKRAQGFDMDID   74 (191)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             cccceEEee-cccchHHHHHHHHhhccccc
Confidence            378999999 99999999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.57  E-value=0.33  Score=28.26  Aligned_cols=27  Identities=19%  Similarity=0.123  Sum_probs=24.6

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++|.| +|.+|.=.++.++.+|.+|.
T Consensus        21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vt   47 (122)
T d1h6va2          21 GKTLVVG-ASYVALECAGFLAGIGLDVT   47 (122)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEEC-CCccHHHHHHHHhhcCCeEE
Confidence            6899999 89999999999999999875

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.27  E-value=0.87  Score=29.77  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=25.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHH-HHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIA-LHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla-~~~G~~vi  120 (121)
                      -+|.+|+|.| .|.+|..+++++ +..|++|+
T Consensus        30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv   60 (239)
T d1gtma1          30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVV   60 (239)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCccee
Confidence            3789999999 899999999876 45799886

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.87  E-value=0.58  Score=28.76  Aligned_cols=34  Identities=15%  Similarity=0.075  Sum_probs=23.4

Q ss_pred             HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430          82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG  116 (121)
Q Consensus        82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G  116 (121)
                      +|.+...--++++|+|.| +|+++++++..+...|
T Consensus         8 ~l~~~~~~~~~k~vlIlG-aGG~arai~~aL~~~~   41 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYG-AGGAARAVAFELAKDN   41 (177)
T ss_dssp             HHHHHHCCCCSCEEEEEC-CSHHHHHHHHHHTSSS
T ss_pred             HHHHhCCCcCCCEEEEEC-CcHHHHHHHHHHcccc
Confidence            443333334788999999 8999998876665444

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.36  E-value=0.5  Score=27.61  Aligned_cols=29  Identities=17%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..++++|.| +|.+|.=.++..+.+|.+|.
T Consensus        25 ~p~~vvIiG-gG~IG~E~A~~~~~~G~~Vt   53 (125)
T d1ojta2          25 VPGKLLIIG-GGIIGLEMGTVYSTLGSRLD   53 (125)
T ss_dssp             CCSEEEEES-CSHHHHHHHHHHHHHTCEEE
T ss_pred             cCCeEEEEC-CCHHHHHHHHHhhcCCCEEE
Confidence            358999999 89999999999999999775

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=86.14  E-value=0.52  Score=29.46  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      .+.++.|.| .|.+|...++.++.+|.+|+
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~   71 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLH   71 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEE
T ss_pred             cccceeecc-ccccchhhhhhhhccCceEE
Confidence            578999999 99999999999999999875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.10  E-value=0.42  Score=27.74  Aligned_cols=29  Identities=28%  Similarity=0.240  Sum_probs=25.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          91 PGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..++++|.| +|-+|.=.++..+.+|.+|.
T Consensus        24 ~p~~~viiG-~G~iglE~A~~~~~~G~~Vt   52 (123)
T d1dxla2          24 IPKKLVVIG-AGYIGLEMGSVWGRIGSEVT   52 (123)
T ss_dssp             CCSEEEESC-CSHHHHHHHHHHHHHTCEEE
T ss_pred             cCCeEEEEc-cchHHHHHHHHHHhcCCeEE
Confidence            347999999 89999999999999999875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.55  Score=27.25  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=24.6

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++|.| +|.+|.=.++.++.+|.+|.
T Consensus        23 k~vvIvG-gG~iG~E~A~~l~~~G~~Vt   49 (125)
T d3grsa2          23 GRSVIVG-AGYIAVEMAGILSALGSKTS   49 (125)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEc-CCccHHHHHHHHhcCCcEEE
Confidence            6899999 89999999999999999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.54  E-value=1.2  Score=27.06  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      -.+.+|||.| +|.+|...++.+...|++
T Consensus        22 l~~~~ilviG-aG~~g~~v~~~L~~~g~~   49 (159)
T d1gpja2          22 LHDKTVLVVG-AGEMGKTVAKSLVDRGVR   49 (159)
T ss_dssp             CTTCEEEEES-CCHHHHHHHHHHHHHCCS
T ss_pred             cccCeEEEEC-CCHHHHHHHHHHHhcCCc
Confidence            4678999999 599999999998888873

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=85.02  E-value=0.51  Score=28.62  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ....+++|++||..| + |.|..++.+|+. |++|+
T Consensus        14 ~~l~~~~~~rvLd~G-C-G~G~~a~~la~~-G~~V~   46 (201)
T d1pjza_          14 SSLNVVPGARVLVPL-C-GKSQDMSWLSGQ-GYHVV   46 (201)
T ss_dssp             HHHCCCTTCEEEETT-T-CCSHHHHHHHHH-CCEEE
T ss_pred             HHcCCCCCCEEEEec-C-cCCHHHHHHHHc-CCceE
Confidence            334789999999998 4 447888888874 88876

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.83  E-value=0.65  Score=26.40  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=24.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          93 ESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        93 ~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ++++|.| +|.+|.-+++.++.+|.+|.
T Consensus        22 ~~vvIiG-gG~~G~E~A~~l~~~g~~Vt   48 (115)
T d1lvla2          22 QHLVVVG-GGYIGLELGIAYRKLGAQVS   48 (115)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHHTCEEE
T ss_pred             CeEEEEC-CCHHHHHHHHHHhhcccceE
Confidence            7899999 89999999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.71  E-value=0.68  Score=29.46  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=26.4

Q ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC--CEEe
Q psy3430          85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG--CTVY  120 (121)
Q Consensus        85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G--~~vi  120 (121)
                      +..++++|++||-.| +|. |..++.+|+..|  .+|+
T Consensus        69 ~~l~l~~g~~VLdiG-~Gt-G~~s~~la~~~~~~g~V~  104 (213)
T d1dl5a1          69 EWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVV  104 (213)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEE
T ss_pred             HhhhccccceEEEec-Ccc-chhHHHHHHHhCCCCcEE
Confidence            778899999999998 443 778888888765  3554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.24  E-value=0.76  Score=30.55  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.-+.+..++++|++||=.| +| .|..+..+++..|++|+
T Consensus        41 ~~~~~~~l~l~~g~~VLDiG-CG-~G~~a~~~a~~~g~~v~   79 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIG-CG-WGTTMRRAVERFDVNVI   79 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEES-CT-TSHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHcCCCCCCEEEEec-CC-chHHHHHHHHhCceeEE
Confidence            44556888999999999998 44 35567888888899875

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.17  E-value=0.44  Score=28.55  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=27.1

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430          87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCT  118 (121)
Q Consensus        87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~  118 (121)
                      .+...|++|+|.| .|.+|.-++..+...|++
T Consensus        24 ~~~~~gkrVvVIG-gG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          24 DKAPVGNKVAIIG-CGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SCCCCCSEEEEEC-CHHHHHHHHHHHTCCSSC
T ss_pred             CccccCCceEEEc-CchhHHHHHHHHHHcCCc
Confidence            4667899999999 799999999999988875

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.65  E-value=0.85  Score=30.58  Aligned_cols=39  Identities=18%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +.-+.+..++++|++||=.| + |.|..++.+|+..|++|+
T Consensus        50 ~~~~~~~l~l~~G~~VLDiG-C-G~G~~~~~~a~~~g~~v~   88 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIG-C-GWGSTMRHAVAEYDVNVI   88 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEET-C-TTSHHHHHHHHHHCCEEE
T ss_pred             HHHHHHhcCCCCCCEEEEec-C-cchHHHHHHHHhcCccee
Confidence            44455889999999999998 4 446678899999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.24  E-value=1.2  Score=26.42  Aligned_cols=41  Identities=15%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             HHHHHHHhhcCCCCCCEEEEec-CCchHHHHHHHHHHHCCCEEe
Q psy3430          78 TAYYSLIVRGKMRPGESLLVHA-GAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        78 ta~~~l~~~~~~~~g~~vli~g-a~g~vG~~aiqla~~~G~~vi  120 (121)
                      |....+  ..+.++++.++|.. +.|-+|.-+++.+..+|++|.
T Consensus        27 t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vt   68 (156)
T d1djqa2          27 TPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVT   68 (156)
T ss_dssp             CHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEE
T ss_pred             CHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCCeEE
Confidence            444454  35677888888873 267899999999999999875

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.00  E-value=2.6  Score=26.03  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=26.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      -.|.+++|.|.+.-+|.=+..++...|++|+
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt   57 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVY   57 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEE
Confidence            3689999999888899988888888999875

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=1.4  Score=27.28  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             cCCCCCCEEEEe---cCCchHHHHHHHHHHHCCCEEe
Q psy3430          87 GKMRPGESLLVH---AGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        87 ~~~~~g~~vli~---ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      ..+.+|++|||.   =++|+.=.+++++.+..|++|+
T Consensus       113 ~~i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vv  149 (178)
T d1zn7a1         113 DALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVL  149 (178)
T ss_dssp             TSSCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEE
T ss_pred             CcccCCCeEEEehhhhhhchHHHHHHHHHHHCCCEEE
Confidence            346799999886   3489999999999999999875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.57  E-value=0.64  Score=30.60  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             EEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430          95 LLVHAGAGGLGQAAISIALHMGCTVYT  121 (121)
Q Consensus        95 vli~ga~g~vG~~aiqla~~~G~~vi~  121 (121)
                      |+|.| +|..|+.+..-+...|++|++
T Consensus        19 VlVIG-~G~aGl~aA~~la~~G~~V~l   44 (308)
T d1y0pa2          19 VVVVG-SGGAGFSAAISATDSGAKVIL   44 (308)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCcEEE
Confidence            78888 899999998888889998863

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=80.75  E-value=1.4  Score=28.10  Aligned_cols=39  Identities=28%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430          80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY  120 (121)
Q Consensus        80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi  120 (121)
                      +..|.+..++++|++||=.| + |.|..+..+++..|++|+
T Consensus        22 ~~~l~~~~~l~pg~~VLDiG-C-G~G~~~~~la~~~~~~v~   60 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLG-S-GSGEMLCTWARDHGITGT   60 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEET-C-TTCHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHcCCCCCCEEEEEc-C-CCCHHHHHHHHhcCCEEE
Confidence            33556888999999998887 3 346677888888888875