Psyllid ID: psy3432
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | 2.2.26 [Sep-21-2011] | |||||||
| Q32KM1 | 451 | Tubulin gamma-2 chain OS= | yes | N/A | 0.552 | 0.851 | 0.715 | 0.0 | |
| P23258 | 451 | Tubulin gamma-1 chain OS= | yes | N/A | 0.552 | 0.851 | 0.712 | 0.0 | |
| Q0VCD2 | 451 | Tubulin gamma-1 chain OS= | yes | N/A | 0.552 | 0.851 | 0.715 | 0.0 | |
| P23330 | 451 | Tubulin gamma-1 chain OS= | N/A | N/A | 0.552 | 0.851 | 0.710 | 1e-180 | |
| Q9GKK5 | 451 | Tubulin gamma-1 chain OS= | yes | N/A | 0.552 | 0.851 | 0.710 | 1e-180 | |
| Q9NRH3 | 451 | Tubulin gamma-2 chain OS= | yes | N/A | 0.552 | 0.851 | 0.708 | 1e-180 | |
| P83888 | 451 | Tubulin gamma-1 chain OS= | yes | N/A | 0.552 | 0.851 | 0.703 | 1e-179 | |
| P83887 | 451 | Tubulin gamma-1 chain OS= | yes | N/A | 0.552 | 0.851 | 0.703 | 1e-179 | |
| Q8VCK3 | 451 | Tubulin gamma-2 chain OS= | yes | N/A | 0.552 | 0.851 | 0.699 | 1e-177 | |
| P23257 | 475 | Tubulin gamma-1 chain OS= | yes | N/A | 0.574 | 0.84 | 0.668 | 1e-175 |
| >sp|Q32KM1|TBG2_BOVIN Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/439 (71%), Positives = 350/439 (79%), Gaps = 55/439 (12%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
ADDEHYIPRAVLLDLEPRVIH+I+NSPYAKL
Sbjct: 55 ADDEHYIPRAVLLDLEPRVIHSILNSPYAKL----------------------------- 85
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
YNPEN+YLS+ GGGAGNNWASG+SQG+K+ E+IFDIIDRE
Sbjct: 86 --------------------YNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDRE 125
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
ADGSDSLEGFVLCHSIAGGTGSG+GSYLLE L DR+PKK++QTYSVFPNQDE+SDVVVQP
Sbjct: 126 ADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQP 185
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ ST+TLRY
Sbjct: 186 YNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRY 245
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
P YMNNDLIGLIA LIPTPRLHFLMTGYTPLT + VAS+RKTTVLDVMRRLLQPKN+MV
Sbjct: 246 PGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMV 305
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
ST DR + HCY++ILNIIQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSP
Sbjct: 306 STGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSP 365
Query: 388 YVPTSHRVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLESLDELDDSR 441
Y+P++HRVSGLM+ANHT+ISS +L KREAFLEQFRKE++F ++ DELD SR
Sbjct: 366 YLPSAHRVSGLMMANHTSISSLFESSCQQYDKLRKREAFLEQFRKEDIFKDNFDELDRSR 425
Query: 442 REVDELVQEYCAATRPDYL 460
V EL+ EY AATRPDY+
Sbjct: 426 EVVQELIDEYHAATRPDYI 444
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Tubulin is the major constituent of microtubules. Gamma tubulin is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. Pericentriolar matrix component that regulates alpha/beta tubulin minus-end nucleation, centrosome duplication and spindle formation. Bos taurus (taxid: 9913) |
| >sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q0VCD2|TBG1_BOVIN Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P23330|TBG1_XENLA Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P83888|TBG1_RAT Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P83887|TBG1_MOUSE Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8VCK3|TBG2_MOUSE Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P23257|TBG1_DROME Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | ||||||
| 156542283 | 452 | PREDICTED: tubulin gamma-1 chain-like [N | 0.552 | 0.849 | 0.740 | 0.0 | |
| 307192900 | 453 | Tubulin gamma-1 chain [Harpegnathos salt | 0.552 | 0.847 | 0.738 | 0.0 | |
| 350403580 | 453 | PREDICTED: tubulin gamma-1 chain-like is | 0.552 | 0.847 | 0.735 | 0.0 | |
| 307176008 | 453 | Tubulin gamma-1 chain [Camponotus florid | 0.569 | 0.874 | 0.720 | 0.0 | |
| 340722871 | 453 | PREDICTED: tubulin gamma-1 chain-like is | 0.552 | 0.847 | 0.735 | 0.0 | |
| 328785490 | 453 | PREDICTED: tubulin gamma-1 chain isoform | 0.552 | 0.847 | 0.738 | 0.0 | |
| 380022705 | 453 | PREDICTED: LOW QUALITY PROTEIN: tubulin | 0.552 | 0.847 | 0.735 | 0.0 | |
| 383850323 | 453 | PREDICTED: tubulin gamma-1 chain [Megach | 0.552 | 0.847 | 0.733 | 0.0 | |
| 350403583 | 464 | PREDICTED: tubulin gamma-1 chain-like is | 0.552 | 0.827 | 0.717 | 0.0 | |
| 301773582 | 451 | PREDICTED: tubulin gamma-2 chain-like [A | 0.552 | 0.851 | 0.717 | 1e-180 |
| >gi|156542283|ref|XP_001601917.1| PREDICTED: tubulin gamma-1 chain-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/439 (74%), Positives = 353/439 (80%), Gaps = 55/439 (12%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
+DDEHYIPRAVLLDLEPRVIHTIMNSPY+KL
Sbjct: 55 SDDEHYIPRAVLLDLEPRVIHTIMNSPYSKL----------------------------- 85
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
YNPEN+YLSK GGGAGNNWASGY QG+KLQEEIFDI+DRE
Sbjct: 86 --------------------YNPENIYLSKHGGGAGNNWASGYHQGEKLQEEIFDILDRE 125
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
ADGSDSLEGFVLCHSIAGGTGSGMGS++LE LADRFPKK+I+TYSVFPNQDEISDVVVQP
Sbjct: 126 ADGSDSLEGFVLCHSIAGGTGSGMGSFMLESLADRFPKKLIETYSVFPNQDEISDVVVQP 185
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNSLLTLKRLT ADCVVVLDNTALNRIA DRLHI+NPSF QIN LVSTIM+VST+TLRY
Sbjct: 186 YNSLLTLKRLTQCADCVVVLDNTALNRIASDRLHIQNPSFTQINKLVSTIMSVSTTTLRY 245
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
PSYMNNDL+GLIAPLIPTPRLHFLMTGYTPLT + E AS+RKT+VLDVMRRLLQPKNMMV
Sbjct: 246 PSYMNNDLVGLIAPLIPTPRLHFLMTGYTPLTTDQEGASVRKTSVLDVMRRLLQPKNMMV 305
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
STA DR + HCY+SILNIIQGEVDP QVHKSLQRIRERKL FIPW PA IQVALS+KSP
Sbjct: 306 STALDRNAAHCYISILNIIQGEVDPTQVHKSLQRIRERKLAQFIPWGPASIQVALSRKSP 365
Query: 388 YVPTSHRVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLESLDELDDSR 441
Y+ ++HRVSGLMLANHTNISS +L KREAFLEQFRKE+MF ++LDELD+SR
Sbjct: 366 YIQSTHRVSGLMLANHTNISSLFDRALQQYDKLRKREAFLEQFRKEKMFEDNLDELDNSR 425
Query: 442 REVDELVQEYCAATRPDYL 460
VD LV+EY AATR DYL
Sbjct: 426 EVVDYLVKEYQAATRSDYL 444
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Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307192900|gb|EFN75928.1| Tubulin gamma-1 chain [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|350403580|ref|XP_003486842.1| PREDICTED: tubulin gamma-1 chain-like isoform 1 [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|307176008|gb|EFN65784.1| Tubulin gamma-1 chain [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|340722871|ref|XP_003399824.1| PREDICTED: tubulin gamma-1 chain-like isoform 1 [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|328785490|ref|XP_394981.4| PREDICTED: tubulin gamma-1 chain isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|380022705|ref|XP_003695179.1| PREDICTED: LOW QUALITY PROTEIN: tubulin gamma-1 chain-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|383850323|ref|XP_003700745.1| PREDICTED: tubulin gamma-1 chain [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|350403583|ref|XP_003486843.1| PREDICTED: tubulin gamma-1 chain-like isoform 2 [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|301773582|ref|XP_002922189.1| PREDICTED: tubulin gamma-2 chain-like [Ailuropoda melanoleuca] gi|410981173|ref|XP_003996947.1| PREDICTED: tubulin gamma-2 chain [Felis catus] gi|281344546|gb|EFB20130.1| hypothetical protein PANDA_011167 [Ailuropoda melanoleuca] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | ||||||
| UNIPROTKB|E2RD85 | 451 | TUBG1 "Tubulin gamma chain" [C | 0.510 | 0.787 | 0.800 | 1.8e-157 | |
| UNIPROTKB|Q32KM1 | 451 | TUBG2 "Tubulin gamma-2 chain" | 0.510 | 0.787 | 0.797 | 4.8e-157 | |
| UNIPROTKB|F1PCT3 | 451 | TUBG1 "Tubulin gamma chain" [C | 0.510 | 0.787 | 0.792 | 6.2e-157 | |
| UNIPROTKB|Q0VCD2 | 451 | TUBG1 "Tubulin gamma-1 chain" | 0.510 | 0.787 | 0.792 | 7.9e-157 | |
| UNIPROTKB|F2Z562 | 451 | TUBG1 "Tubulin gamma chain" [S | 0.510 | 0.787 | 0.792 | 7.9e-157 | |
| UNIPROTKB|P23258 | 451 | TUBG1 "Tubulin gamma-1 chain" | 0.510 | 0.787 | 0.789 | 1e-156 | |
| ZFIN|ZDB-GENE-040426-836 | 451 | tubg1 "tubulin, gamma 1" [Dani | 0.509 | 0.784 | 0.791 | 1.6e-156 | |
| UNIPROTKB|F1N9Y0 | 420 | TUBG1 "Tubulin gamma chain" [G | 0.509 | 0.842 | 0.791 | 2.1e-156 | |
| UNIPROTKB|P23330 | 451 | tubg1 "Tubulin gamma-1 chain" | 0.509 | 0.784 | 0.791 | 3.4e-156 | |
| UNIPROTKB|Q9NRH3 | 451 | TUBG2 "Tubulin gamma-2 chain" | 0.510 | 0.787 | 0.789 | 1.1e-155 |
| UNIPROTKB|E2RD85 TUBG1 "Tubulin gamma chain" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1500 (533.1 bits), Expect = 1.8e-157, Sum P(2) = 1.8e-157
Identities = 289/361 (80%), Positives = 322/361 (89%)
Query: 106 ELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAG 165
+LYNPEN+YLS+ GGGAGNNWASG+SQG+K+ E+IFDIIDREADGSDSLEGFVLCHSIAG
Sbjct: 84 KLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAG 143
Query: 166 GTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVV 225
GTGSG+GSYLLE L DR+PKK++QTYSVFPNQDE+SDVVVQPYNSLLTLKRLT NADCVV
Sbjct: 144 GTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVV 203
Query: 226 VLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPT 285
VLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ ST+TLRYP YMNNDLIGLIA LIPT
Sbjct: 204 VLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPT 263
Query: 286 PRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNI 345
PRLHFLMTGYTPLT + VAS+RKTTVLDVMRRLLQPKN+MVST DR + HCY++ILNI
Sbjct: 264 PRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNI 323
Query: 346 IQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTN 405
IQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSPY+P++HRVSGLM+ANHT+
Sbjct: 324 IQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTS 383
Query: 406 ISSGI--SWQ----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDY 459
ISS S Q L KREAFLEQFRKE++F E+ DELD SR V EL+ EY AATRPDY
Sbjct: 384 ISSLFESSCQQYDKLRKREAFLEQFRKEDIFKENFDELDTSREVVQELIDEYHAATRPDY 443
Query: 460 L 460
+
Sbjct: 444 I 444
|
|
| UNIPROTKB|Q32KM1 TUBG2 "Tubulin gamma-2 chain" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PCT3 TUBG1 "Tubulin gamma chain" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0VCD2 TUBG1 "Tubulin gamma-1 chain" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F2Z562 TUBG1 "Tubulin gamma chain" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P23258 TUBG1 "Tubulin gamma-1 chain" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-836 tubg1 "tubulin, gamma 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N9Y0 TUBG1 "Tubulin gamma chain" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P23330 tubg1 "Tubulin gamma-1 chain" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9NRH3 TUBG2 "Tubulin gamma-2 chain" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P83888 | TBG1_RAT | No assigned EC number | 0.7038 | 0.5525 | 0.8514 | yes | N/A |
| P83887 | TBG1_MOUSE | No assigned EC number | 0.7038 | 0.5525 | 0.8514 | yes | N/A |
| Q9GKK5 | TBG1_CANFA | No assigned EC number | 0.7107 | 0.5525 | 0.8514 | yes | N/A |
| Q55AR3 | TBG_DICDI | No assigned EC number | 0.5466 | 0.5410 | 0.8138 | yes | N/A |
| P25295 | TBG_SCHPO | No assigned EC number | 0.5827 | 0.5496 | 0.8565 | yes | N/A |
| Q0VCD2 | TBG1_BOVIN | No assigned EC number | 0.7152 | 0.5525 | 0.8514 | yes | N/A |
| P18695 | TBG_EMENI | No assigned EC number | 0.5524 | 0.5726 | 0.8766 | yes | N/A |
| Q9NRH3 | TBG2_HUMAN | No assigned EC number | 0.7084 | 0.5525 | 0.8514 | yes | N/A |
| Q8VCK3 | TBG2_MOUSE | No assigned EC number | 0.6993 | 0.5525 | 0.8514 | yes | N/A |
| P38557 | TBG1_ARATH | No assigned EC number | 0.6170 | 0.5741 | 0.8417 | yes | N/A |
| P23257 | TBG1_DROME | No assigned EC number | 0.6688 | 0.5741 | 0.84 | yes | N/A |
| P23258 | TBG1_HUMAN | No assigned EC number | 0.7129 | 0.5525 | 0.8514 | yes | N/A |
| P38558 | TBG2_ARATH | No assigned EC number | 0.6258 | 0.5741 | 0.8417 | yes | N/A |
| O49068 | TBG2_ORYSJ | No assigned EC number | 0.6170 | 0.5741 | 0.8507 | yes | N/A |
| Q32KM1 | TBG2_BOVIN | No assigned EC number | 0.7152 | 0.5525 | 0.8514 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 695 | |||
| cd02188 | 431 | cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit | 0.0 | |
| PLN00222 | 454 | PLN00222, PLN00222, tubulin gamma chain; Provision | 0.0 | |
| COG5023 | 443 | COG5023, COG5023, Tubulin [Cytoskeleton] | 1e-153 | |
| cd00286 | 328 | cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ | 1e-109 | |
| cd06059 | 382 | cd06059, Tubulin, The tubulin superfamily includes | 1e-105 | |
| cd02188 | 431 | cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit | 1e-102 | |
| PLN00222 | 454 | PLN00222, PLN00222, tubulin gamma chain; Provision | 1e-100 | |
| cd02187 | 425 | cd02187, beta_tubulin, The tubulin superfamily inc | 3e-86 | |
| PTZ00010 | 445 | PTZ00010, PTZ00010, tubulin beta chain; Provisiona | 4e-78 | |
| cd02186 | 434 | cd02186, alpha_tubulin, The tubulin superfamily in | 8e-69 | |
| PLN00220 | 447 | PLN00220, PLN00220, tubulin beta chain; Provisiona | 1e-67 | |
| PTZ00335 | 448 | PTZ00335, PTZ00335, tubulin alpha chain; Provision | 2e-62 | |
| cd02190 | 379 | cd02190, epsilon_tubulin, The tubulin superfamily | 2e-58 | |
| pfam03953 | 126 | pfam03953, Tubulin_C, Tubulin C-terminal domain | 2e-57 | |
| pfam03953 | 126 | pfam03953, Tubulin_C, Tubulin C-terminal domain | 1e-56 | |
| COG5023 | 443 | COG5023, COG5023, Tubulin [Cytoskeleton] | 1e-54 | |
| PLN00221 | 450 | PLN00221, PLN00221, tubulin alpha chain; Provision | 2e-53 | |
| smart00864 | 192 | smart00864, Tubulin, Tubulin/FtsZ family, GTPase d | 2e-52 | |
| PTZ00387 | 465 | PTZ00387, PTZ00387, epsilon tubulin; Provisional | 2e-52 | |
| cd02189 | 446 | cd02189, delta_tubulin, The tubulin superfamily in | 4e-46 | |
| pfam00091 | 210 | pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do | 7e-45 | |
| cd06059 | 382 | cd06059, Tubulin, The tubulin superfamily includes | 1e-29 | |
| cd00286 | 328 | cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ | 8e-29 | |
| cd02187 | 425 | cd02187, beta_tubulin, The tubulin superfamily inc | 1e-18 | |
| cd02186 | 434 | cd02186, alpha_tubulin, The tubulin superfamily in | 3e-16 | |
| PTZ00335 | 448 | PTZ00335, PTZ00335, tubulin alpha chain; Provision | 2e-15 | |
| PTZ00010 | 445 | PTZ00010, PTZ00010, tubulin beta chain; Provisiona | 5e-14 | |
| smart00865 | 120 | smart00865, Tubulin_C, Tubulin/FtsZ family, C-term | 2e-13 | |
| smart00865 | 120 | smart00865, Tubulin_C, Tubulin/FtsZ family, C-term | 2e-11 | |
| cd02190 | 379 | cd02190, epsilon_tubulin, The tubulin superfamily | 3e-11 | |
| PTZ00387 | 465 | PTZ00387, PTZ00387, epsilon tubulin; Provisional | 3e-11 | |
| PLN00220 | 447 | PLN00220, PLN00220, tubulin beta chain; Provisiona | 6e-11 | |
| PLN00221 | 450 | PLN00221, PLN00221, tubulin alpha chain; Provision | 3e-09 | |
| cd02202 | 349 | cd02202, FtsZ_type2, FtsZ is a GTPase that is simi | 5e-05 |
| >gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily | Back alignment and domain information |
|---|
Score = 702 bits (1813), Expect = 0.0
Identities = 295/430 (68%), Positives = 332/430 (77%), Gaps = 57/430 (13%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
ADDEHY+PRA+L+DLEPRVI++I NS Y LYNPEN++LSK GGGAGNNWASGYSQG+++
Sbjct: 53 ADDEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEV 112
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
QEEI DIIDREADGSDSLE
Sbjct: 113 QEEILDIIDREADGSDSLE----------------------------------------- 131
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
GFVLCHSIAGGTGSGMGSYLLE L DR+PKK+IQTYSVFPNQDE SDVVVQP
Sbjct: 132 --------GFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQP 183
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNS+LTLKRL LNADCVVVLDNTALNRIA DRLHI+NP+F QINSLVST+M+ ST+TLRY
Sbjct: 184 YNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTTLRY 243
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
P YMNNDLI LIA LIPTPRLHFLMT YTPLT++ AS+RKTTVLDVMRRLLQPKN+MV
Sbjct: 244 PGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMV 303
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
STA + CY+SILNIIQGEVDP QVHKSLQRIRER+L NFIPW PA IQVALSKKSP
Sbjct: 304 STATRK--NGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSP 361
Query: 388 YVPTSHRVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLESLDELDDSR 441
YVPT+HRVSGLMLANHT+I+S +L KR AFL+ +RKE+MF ++LDE D+SR
Sbjct: 362 YVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESR 421
Query: 442 REVDELVQEY 451
V L++EY
Sbjct: 422 EVVQSLIEEY 431
|
Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping. Length = 431 |
| >gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation | Back alignment and domain information |
|---|
| >gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain | Back alignment and domain information |
|---|
| >gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain | Back alignment and domain information |
|---|
| >gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation | Back alignment and domain information |
|---|
| >gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| COG5023 | 443 | Tubulin [Cytoskeleton] | 100.0 | |
| cd02188 | 431 | gamma_tubulin Gamma-tubulin is a ubiquitous phylog | 100.0 | |
| KOG1374|consensus | 448 | 100.0 | ||
| PLN00222 | 454 | tubulin gamma chain; Provisional | 100.0 | |
| PLN00221 | 450 | tubulin alpha chain; Provisional | 100.0 | |
| PTZ00335 | 448 | tubulin alpha chain; Provisional | 100.0 | |
| PTZ00010 | 445 | tubulin beta chain; Provisional | 100.0 | |
| cd02187 | 425 | beta_tubulin The tubulin superfamily includes five | 100.0 | |
| cd02186 | 434 | alpha_tubulin The tubulin superfamily includes fiv | 100.0 | |
| PLN00220 | 447 | tubulin beta chain; Provisional | 100.0 | |
| PTZ00387 | 465 | epsilon tubulin; Provisional | 100.0 | |
| cd02190 | 379 | epsilon_tubulin The tubulin superfamily includes f | 100.0 | |
| cd02189 | 446 | delta_tubulin The tubulin superfamily includes fiv | 100.0 | |
| KOG1376|consensus | 407 | 100.0 | ||
| cd06059 | 382 | Tubulin The tubulin superfamily includes five dist | 100.0 | |
| KOG1375|consensus | 369 | 100.0 | ||
| COG5023 | 443 | Tubulin [Cytoskeleton] | 100.0 | |
| cd00286 | 328 | Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin | 100.0 | |
| PLN00222 | 454 | tubulin gamma chain; Provisional | 100.0 | |
| PTZ00010 | 445 | tubulin beta chain; Provisional | 100.0 | |
| PLN00221 | 450 | tubulin alpha chain; Provisional | 100.0 | |
| cd02188 | 431 | gamma_tubulin Gamma-tubulin is a ubiquitous phylog | 100.0 | |
| PTZ00335 | 448 | tubulin alpha chain; Provisional | 100.0 | |
| KOG1374|consensus | 448 | 100.0 | ||
| cd02187 | 425 | beta_tubulin The tubulin superfamily includes five | 100.0 | |
| PLN00220 | 447 | tubulin beta chain; Provisional | 100.0 | |
| cd02186 | 434 | alpha_tubulin The tubulin superfamily includes fiv | 100.0 | |
| PTZ00387 | 465 | epsilon tubulin; Provisional | 100.0 | |
| cd02190 | 379 | epsilon_tubulin The tubulin superfamily includes f | 100.0 | |
| PF00091 | 216 | Tubulin: Tubulin/FtsZ family, GTPase domain; Inter | 100.0 | |
| cd06059 | 382 | Tubulin The tubulin superfamily includes five dist | 100.0 | |
| smart00864 | 192 | Tubulin Tubulin/FtsZ family, GTPase domain. This d | 100.0 | |
| KOG1375|consensus | 369 | 100.0 | ||
| cd02189 | 446 | delta_tubulin The tubulin superfamily includes fiv | 100.0 | |
| KOG1376|consensus | 407 | 99.98 | ||
| cd06060 | 493 | misato Human Misato shows similarity with Tubulin/ | 99.97 | |
| PF03953 | 126 | Tubulin_C: Tubulin C-terminal domain; InterPro: IP | 99.96 | |
| cd02202 | 349 | FtsZ_type2 FtsZ is a GTPase that is similar to the | 99.96 | |
| cd02191 | 303 | FtsZ FtsZ is a GTPase that is similar to the eukar | 99.93 | |
| PF03953 | 126 | Tubulin_C: Tubulin C-terminal domain; InterPro: IP | 99.92 | |
| TIGR00065 | 349 | ftsZ cell division protein FtsZ. This family consi | 99.9 | |
| cd02201 | 304 | FtsZ_type1 FtsZ is a GTPase that is similar to the | 99.9 | |
| PRK13018 | 378 | cell division protein FtsZ; Provisional | 99.89 | |
| PRK09330 | 384 | cell division protein FtsZ; Validated | 99.84 | |
| KOG2530|consensus | 483 | 99.75 | ||
| PF14881 | 180 | Tubulin_3: Tubulin domain | 99.75 | |
| cd00286 | 328 | Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin | 99.69 | |
| COG0206 | 338 | FtsZ Cell division GTPase [Cell division and chrom | 99.46 | |
| smart00865 | 120 | Tubulin_C Tubulin/FtsZ family, C-terminal domain. | 99.04 | |
| smart00865 | 120 | Tubulin_C Tubulin/FtsZ family, C-terminal domain. | 98.52 | |
| PF13809 | 345 | Tubulin_2: Tubulin like | 96.47 | |
| PF10644 | 115 | Misat_Tub_SegII: Misato Segment II tubulin-like do | 91.38 |
| >COG5023 Tubulin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-113 Score=875.94 Aligned_cols=397 Identities=44% Similarity=0.794 Sum_probs=383.9
Q ss_pred ecCCCceecCC--CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccc
Q psy3432 6 YNPENVYLSKD--GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQ 83 (695)
Q Consensus 6 ~~~~~~~~~~~--~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~ 83 (695)
.+|+|.+.++. +++.+++||+|+++|+||||||+|||||.||+.+++|+|+++|+|+|+++|+ +|||||||+
T Consensus 30 I~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~~lf~Pen~i~gk--egAgNnwA~---- 103 (443)
T COG5023 30 IGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGK--EGAGNNWAR---- 103 (443)
T ss_pred cCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCccccccChhheeecc--ccccccccc----
Confidence 36788876663 4589999999999999999999999999999999999999999999999999 899999999
Q ss_pred cchhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeee
Q psy3432 84 GKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHS 162 (695)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~S 162 (695)
| |+.|+++.|.++|.|||++|.||+||||+++||
T Consensus 104 ---------------------------------------------GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS 138 (443)
T COG5023 104 ---------------------------------------------GHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHS 138 (443)
T ss_pred ---------------------------------------------cccchhHHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 9 999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCC
Q psy3432 163 IAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHI 242 (695)
Q Consensus 163 l~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~ 242 (695)
+|||||||+|++|+|+|++|||||.+.+++|+|.+ +.+++||||||++|++|+|.|++|+++++||+||+++|.+.|++
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p-~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i 217 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAP-KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRI 217 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCC-ccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCC
Q psy3432 243 ENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQP 322 (695)
Q Consensus 243 ~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~ 322 (695)
.+|+|.++|++||++|+++|+++||||++|+||.++.+|||||||+||+.++|+|+++..+ ..+++.|+.+++++||+|
T Consensus 218 ~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~-~~~~~~sv~evt~~~f~p 296 (443)
T COG5023 218 QNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGS-AAHEKNSVSEVTNQLFDP 296 (443)
T ss_pred CCCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhh-HHHhcccHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999864 688999999999999999
Q ss_pred CCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeecc
Q psy3432 323 KNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLAN 402 (695)
Q Consensus 323 ~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsN 402 (695)
+|+|++|+|+. |+||++|+++||+++++||++++.++|.|++.+||+|||+++|+++|+++|....+.++++|||+|
T Consensus 297 ~N~mv~~dpr~---g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsN 373 (443)
T COG5023 297 KNQMVSCDPRK---GRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSN 373 (443)
T ss_pred ccceeeecCCC---CeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecC
Confidence 99999999964 999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred chhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCCCCCC
Q psy3432 403 HTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLY 461 (695)
Q Consensus 403 stsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~~~r~ 461 (695)
+|+|+.+|+ ++||+||||||||++||||| +||.||++++++|+.+|+++..++|..
T Consensus 374 tTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee---~EFsEare~~~~L~~eY~~~~~~s~~~ 435 (443)
T COG5023 374 TTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEE---GEFSEAREDVADLEEEYEAAEQDSYLD 435 (443)
T ss_pred cHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcc---cchhhHHHHHHHHHHHHHHhccccccc
Confidence 999999999 89999999999999999998 999999999999999999999998765
|
|
| >cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily | Back alignment and domain information |
|---|
| >KOG1374|consensus | Back alignment and domain information |
|---|
| >PLN00222 tubulin gamma chain; Provisional | Back alignment and domain information |
|---|
| >PLN00221 tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >PTZ00335 tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >PTZ00010 tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >PLN00220 tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >PTZ00387 epsilon tubulin; Provisional | Back alignment and domain information |
|---|
| >cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >KOG1376|consensus | Back alignment and domain information |
|---|
| >cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >KOG1375|consensus | Back alignment and domain information |
|---|
| >COG5023 Tubulin [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation | Back alignment and domain information |
|---|
| >PLN00222 tubulin gamma chain; Provisional | Back alignment and domain information |
|---|
| >PTZ00010 tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >PLN00221 tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily | Back alignment and domain information |
|---|
| >PTZ00335 tubulin alpha chain; Provisional | Back alignment and domain information |
|---|
| >KOG1374|consensus | Back alignment and domain information |
|---|
| >cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >PLN00220 tubulin beta chain; Provisional | Back alignment and domain information |
|---|
| >cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >PTZ00387 epsilon tubulin; Provisional | Back alignment and domain information |
|---|
| >cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins | Back alignment and domain information |
|---|
| >cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >smart00864 Tubulin Tubulin/FtsZ family, GTPase domain | Back alignment and domain information |
|---|
| >KOG1375|consensus | Back alignment and domain information |
|---|
| >cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa | Back alignment and domain information |
|---|
| >KOG1376|consensus | Back alignment and domain information |
|---|
| >cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria | Back alignment and domain information |
|---|
| >PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins | Back alignment and domain information |
|---|
| >cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes | Back alignment and domain information |
|---|
| >cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes | Back alignment and domain information |
|---|
| >PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins | Back alignment and domain information |
|---|
| >TIGR00065 ftsZ cell division protein FtsZ | Back alignment and domain information |
|---|
| >cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes | Back alignment and domain information |
|---|
| >PRK13018 cell division protein FtsZ; Provisional | Back alignment and domain information |
|---|
| >PRK09330 cell division protein FtsZ; Validated | Back alignment and domain information |
|---|
| >KOG2530|consensus | Back alignment and domain information |
|---|
| >PF14881 Tubulin_3: Tubulin domain | Back alignment and domain information |
|---|
| >cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation | Back alignment and domain information |
|---|
| >COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain | Back alignment and domain information |
|---|
| >smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain | Back alignment and domain information |
|---|
| >PF13809 Tubulin_2: Tubulin like | Back alignment and domain information |
|---|
| >PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 695 | ||||
| 3cb2_A | 475 | Crystal Structure Of Human Gamma-Tubulin Bound To G | 0.0 | ||
| 3cb2_A | 475 | Crystal Structure Of Human Gamma-Tubulin Bound To G | 2e-86 | ||
| 1z5v_A | 474 | Crystal Structure Of Human Gamma-Tubulin Bound To G | 0.0 | ||
| 1z5v_A | 474 | Crystal Structure Of Human Gamma-Tubulin Bound To G | 2e-86 | ||
| 4ffb_B | 463 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 5e-48 | ||
| 4ffb_B | 463 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 5e-18 | ||
| 3ryc_B | 445 | Tubulin: Rb3 Stathmin-Like Domain Complex Length = | 3e-46 | ||
| 3ryc_B | 445 | Tubulin: Rb3 Stathmin-Like Domain Complex Length = | 7e-13 | ||
| 4i4t_B | 445 | Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co | 3e-46 | ||
| 4i4t_B | 445 | Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co | 1e-12 | ||
| 4f61_B | 445 | Tubulin:stathmin-Like Domain Complex Length = 445 | 5e-46 | ||
| 4f61_B | 445 | Tubulin:stathmin-Like Domain Complex Length = 445 | 1e-12 | ||
| 1ffx_B | 445 | Tubulin:stathmin-Like Domain Complex Length = 445 | 5e-46 | ||
| 1ffx_B | 445 | Tubulin:stathmin-Like Domain Complex Length = 445 | 2e-12 | ||
| 2xrp_A | 445 | Human Doublecortin N-Dc Repeat (1mjd) And Mammalian | 5e-46 | ||
| 2xrp_A | 445 | Human Doublecortin N-Dc Repeat (1mjd) And Mammalian | 2e-12 | ||
| 4drx_B | 431 | Gtp-Tubulin In Complex With A Darpin Length = 431 | 6e-46 | ||
| 4drx_B | 431 | Gtp-Tubulin In Complex With A Darpin Length = 431 | 1e-12 | ||
| 3du7_B | 445 | Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai | 6e-46 | ||
| 3du7_B | 445 | Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai | 2e-12 | ||
| 1tub_B | 427 | Tubulin Alpha-Beta Dimer, Electron Diffraction Leng | 7e-46 | ||
| 1tub_B | 427 | Tubulin Alpha-Beta Dimer, Electron Diffraction Leng | 2e-12 | ||
| 1z2b_B | 445 | Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai | 8e-46 | ||
| 1z2b_B | 445 | Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai | 2e-12 | ||
| 2btq_B | 426 | Structure Of Btubab Heterodimer From Prosthecobacte | 1e-40 | ||
| 2btq_B | 426 | Structure Of Btubab Heterodimer From Prosthecobacte | 1e-08 | ||
| 3ryc_A | 451 | Tubulin: Rb3 Stathmin-Like Domain Complex Length = | 2e-38 | ||
| 3ryc_A | 451 | Tubulin: Rb3 Stathmin-Like Domain Complex Length = | 6e-10 | ||
| 4i4t_A | 450 | Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co | 2e-38 | ||
| 4i4t_A | 450 | Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co | 6e-10 | ||
| 4drx_A | 437 | Gtp-Tubulin In Complex With A Darpin Length = 437 | 2e-38 | ||
| 4drx_A | 437 | Gtp-Tubulin In Complex With A Darpin Length = 437 | 7e-10 | ||
| 3hkb_A | 451 | Tubulin: Rb3 Stathmin-Like Domain Complex Length = | 3e-38 | ||
| 3hkb_A | 451 | Tubulin: Rb3 Stathmin-Like Domain Complex Length = | 4e-10 | ||
| 1sa0_A | 451 | Tubulin-Colchicine: Stathmin-Like Domain Complex Le | 8e-38 | ||
| 1sa0_A | 451 | Tubulin-Colchicine: Stathmin-Like Domain Complex Le | 5e-10 | ||
| 3du7_A | 449 | Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai | 9e-38 | ||
| 3du7_A | 449 | Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai | 1e-09 | ||
| 1z2b_A | 448 | Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai | 9e-38 | ||
| 1z2b_A | 448 | Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai | 8e-10 | ||
| 1ffx_A | 451 | Tubulin:stathmin-Like Domain Complex Length = 451 | 2e-37 | ||
| 1ffx_A | 451 | Tubulin:stathmin-Like Domain Complex Length = 451 | 1e-09 | ||
| 2xrp_B | 452 | Human Doublecortin N-Dc Repeat (1mjd) And Mammalian | 4e-37 | ||
| 2xrp_B | 452 | Human Doublecortin N-Dc Repeat (1mjd) And Mammalian | 2e-09 | ||
| 1jff_A | 451 | Refined Structure Of Alpha-Beta Tubulin From Zinc-I | 4e-37 | ||
| 1jff_A | 451 | Refined Structure Of Alpha-Beta Tubulin From Zinc-I | 2e-09 | ||
| 1tub_A | 440 | Tubulin Alpha-Beta Dimer, Electron Diffraction Leng | 4e-37 | ||
| 1tub_A | 440 | Tubulin Alpha-Beta Dimer, Electron Diffraction Leng | 2e-09 | ||
| 4ffb_A | 447 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 4e-36 | ||
| 4ffb_A | 447 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 5e-09 | ||
| 2bto_A | 473 | Structure Of Btuba From Prosthecobacter Dejongeii L | 1e-30 | ||
| 2bto_A | 473 | Structure Of Btuba From Prosthecobacter Dejongeii L | 2e-05 |
| >pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 | Back alignment and structure |
|
| >pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 | Back alignment and structure |
| >pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 | Back alignment and structure |
| >pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 | Back alignment and structure |
| >pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 | Back alignment and structure |
| >pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 | Back alignment and structure |
| >pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 | Back alignment and structure |
| >pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 | Back alignment and structure |
| >pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 | Back alignment and structure |
| >pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 | Back alignment and structure |
| >pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 | Back alignment and structure |
| >pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 | Back alignment and structure |
| >pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 | Back alignment and structure |
| >pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 | Back alignment and structure |
| >pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 | Back alignment and structure |
| >pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 | Back alignment and structure |
| >pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 | Back alignment and structure |
| >pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 | Back alignment and structure |
| >pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 | Back alignment and structure |
| >pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 | Back alignment and structure |
| >pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 | Back alignment and structure |
| >pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 | Back alignment and structure |
| >pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 | Back alignment and structure |
| >pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 | Back alignment and structure |
| >pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 | Back alignment and structure |
| >pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 | Back alignment and structure |
| >pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 | Back alignment and structure |
| >pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 | Back alignment and structure |
| >pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 | Back alignment and structure |
| >pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 | Back alignment and structure |
| >pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 | Back alignment and structure |
| >pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 | Back alignment and structure |
| >pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 | Back alignment and structure |
| >pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 | Back alignment and structure |
| >pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 | Back alignment and structure |
| >pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 | Back alignment and structure |
|---|
Score = 538 bits (1389), Expect = 0.0
Identities = 312/439 (71%), Positives = 349/439 (79%), Gaps = 55/439 (12%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
ADDEHYIPRAVLLDLEPRVIH+I+NSPYAKLYNPEN+YLS+ GGGAGNNWASG+SQG+K+
Sbjct: 55 ADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKI 114
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
E+IFDIIDREADGSDSLE
Sbjct: 115 HEDIFDIIDREADGSDSLE----------------------------------------- 133
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
GFVLCHSIAGGTGSG+GSYLLE L DR+PKK++QTYSVFPNQDE+SDVVVQP
Sbjct: 134 --------GFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQP 185
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNSLLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ ST+TLRY
Sbjct: 186 YNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRY 245
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
P YMNNDLIGLIA LIPTPRLHFLMTGYTPLT + VAS+RKTTVLDVMRRLLQPKN+MV
Sbjct: 246 PGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMV 305
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
ST DR + HCY++ILNIIQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSP
Sbjct: 306 STGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSP 365
Query: 388 YVPTSHRVSGLMLANHTNIS---SGISWQ---LPKREAFLEQFRKEEMFLESLDELDDSR 441
Y+P++HRVSGLM+ANHT+IS Q L KREAFLEQFRKE+MF ++ DE+D SR
Sbjct: 366 YLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSR 425
Query: 442 REVDELVQEYCAATRPDYL 460
V +L+ EY AATRPDY+
Sbjct: 426 EIVQQLIDEYHAATRPDYI 444
|
| >3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 | Back alignment and structure |
|---|
| >3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 | Back alignment and structure |
|---|
| >3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 | Back alignment and structure |
|---|
| >3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 | Back alignment and structure |
|---|
| >3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 | Back alignment and structure |
|---|
| >2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 | Back alignment and structure |
|---|
| >2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 | Back alignment and structure |
|---|
| >2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 | Back alignment and structure |
|---|
| >2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 | Back alignment and structure |
|---|
| >3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 | Back alignment and structure |
|---|
| >4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389 | Back alignment and structure |
|---|
| >3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Length = 315 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Length = 427 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| 3ryc_A | 451 | Tubulin alpha chain; alpha-tubulin, beta-tubulin, | 100.0 | |
| 3ryc_B | 445 | Tubulin beta chain; alpha-tubulin, beta-tubulin, G | 100.0 | |
| 3cb2_A | 475 | Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m | 100.0 | |
| 2btq_B | 426 | Tubulin btubb; structural protein, cytoskeletal pr | 100.0 | |
| 2bto_A | 473 | Tubulin btuba; bacterial tubulin, polymerization, | 100.0 | |
| 3ryc_A | 451 | Tubulin alpha chain; alpha-tubulin, beta-tubulin, | 100.0 | |
| 3ryc_B | 445 | Tubulin beta chain; alpha-tubulin, beta-tubulin, G | 100.0 | |
| 3cb2_A | 475 | Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m | 100.0 | |
| 2btq_B | 426 | Tubulin btubb; structural protein, cytoskeletal pr | 100.0 | |
| 2bto_A | 473 | Tubulin btuba; bacterial tubulin, polymerization, | 100.0 | |
| 2r75_1 | 338 | Cell division protein FTSZ; GTPase, tubulin-like, | 100.0 | |
| 2vap_A | 364 | FTSZ, cell division protein FTSZ homolog 1; polyme | 100.0 | |
| 1w5f_A | 353 | Cell division protein FTSZ; complete proteome, GTP | 100.0 | |
| 2vxy_A | 382 | FTSZ, cell division protein FTSZ; GTP-binding, nuc | 100.0 | |
| 1ofu_A | 320 | FTSZ, cell division protein FTSZ; bacterial cell d | 100.0 | |
| 2vaw_A | 394 | FTSZ, cell division protein FTSZ; bacterial cell d | 100.0 | |
| 1rq2_A | 382 | Cell division protein FTSZ; cell cycle, tubulin, G | 100.0 | |
| 3m89_A | 427 | FTSZ/tubulin-related protein; partition, TUBZ, GTP | 100.0 | |
| 4dxd_A | 396 | Cell division protein FTSZ; rossmann fold, GTPase, | 99.96 | |
| 3v3t_A | 360 | Cell division GTPase FTSZ, diverged; TUBZ, tubulin | 99.96 | |
| 4ei7_A | 389 | Plasmid replication protein REPX; GTP hydrolase, p | 99.55 | |
| 2r75_1 | 338 | Cell division protein FTSZ; GTPase, tubulin-like, | 99.2 | |
| 2vap_A | 364 | FTSZ, cell division protein FTSZ homolog 1; polyme | 99.16 | |
| 3r4v_A | 315 | Putative uncharacterized protein; tubulin, unknown | 99.16 | |
| 1ofu_A | 320 | FTSZ, cell division protein FTSZ; bacterial cell d | 99.11 | |
| 2vxy_A | 382 | FTSZ, cell division protein FTSZ; GTP-binding, nuc | 99.1 | |
| 1w5f_A | 353 | Cell division protein FTSZ; complete proteome, GTP | 99.1 | |
| 2vaw_A | 394 | FTSZ, cell division protein FTSZ; bacterial cell d | 99.04 | |
| 1rq2_A | 382 | Cell division protein FTSZ; cell cycle, tubulin, G | 99.04 | |
| 3m89_A | 427 | FTSZ/tubulin-related protein; partition, TUBZ, GTP | 96.56 | |
| 2e4h_B | 36 | Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- | 96.41 | |
| 4dxd_A | 396 | Cell division protein FTSZ; rossmann fold, GTPase, | 94.9 | |
| 2e4h_B | 36 | Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- | 89.05 |
| >3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-103 Score=861.29 Aligned_cols=394 Identities=31% Similarity=0.564 Sum_probs=375.5
Q ss_pred cCCCceecCC----CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccc
Q psy3432 7 NPENVYLSKD----GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYS 82 (695)
Q Consensus 7 ~~~~~~~~~~----~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~ 82 (695)
+|+|.+...+ .++++++||+|+++|+|+||||||||||+||++|++|+|+++|+|+|+++|+ +|||||||+
T Consensus 31 ~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~g~~~~lf~p~~~i~gk--~gAgNNwA~--- 105 (451)
T 3ryc_A 31 QPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGK--EDAANNYAR--- 105 (451)
T ss_dssp CTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHHSTTTTTSCGGGEEECS--SCCTTCHHH---
T ss_pred CCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeeecccccccCHHHeeecc--ccccCCCCe---
Confidence 6788776442 3679999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccchhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEee
Q psy3432 83 QGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCH 161 (695)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~ 161 (695)
| |+.|+++.|+++|+||+++|+||++|||+++|
T Consensus 106 ----------------------------------------------G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~h 139 (451)
T 3ryc_A 106 ----------------------------------------------GHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH 139 (451)
T ss_dssp ----------------------------------------------HHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEE
T ss_pred ----------------------------------------------eecccchHhHHHHHHHHHHHHHcCCCccceEEEe
Confidence 8 77999999999999999999999999999999
Q ss_pred ecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccC
Q psy3432 162 SIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241 (695)
Q Consensus 162 Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~ 241 (695)
|+|||||||+|++|+|+|+++||++.+++++|+|++ +.++++++|||++|++++|.+++|+++++||++|+++|.+.++
T Consensus 140 SlgGGTGSG~gs~lle~L~~ey~kk~~~~~~v~P~~-~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~ 218 (451)
T 3ryc_A 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218 (451)
T ss_dssp ESSSHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCT-TTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHC
T ss_pred ccCCCCCccHHHHHHHHHHHhcCcceEEEEEEecCC-CcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998 6799999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcC
Q psy3432 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQ 321 (695)
Q Consensus 242 ~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~ 321 (695)
+..|+|.++|++||++++++|+++||||.+|+||.++.+|||||||+||++++|+|+++..+ ..++++++.+|++++|+
T Consensus 219 i~~p~y~~lN~lIa~~~s~iT~slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~-~~~~~~sv~elt~~~f~ 297 (451)
T 3ryc_A 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK-AYHEQLSVAEITNACFE 297 (451)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSS-CCCCCCCHHHHHHHTTC
T ss_pred CCCCCchhhHHHHHhcccccccccccCcccccCHHHHhhccCCCCceeeeccccCccccccc-cccccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998765 67899999999999999
Q ss_pred CCCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCC-----CCcee
Q psy3432 322 PKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT-----SHRVS 396 (695)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~-----~~~~s 396 (695)
++|+|++|+|++ |+||||++++||++++++|++++.++|.|++++||+|+|+++|+++|++||+++| +.+++
T Consensus 298 ~~n~m~~~dp~~---gky~a~~~~~RG~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s 374 (451)
T 3ryc_A 298 PANQMVKCDPRH---GKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 374 (451)
T ss_dssp GGGBSSCCCGGG---SCEEEEEEEEEESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEE
T ss_pred cccceEecCCCC---CchheehhhcccCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCcccccccee
Confidence 999999999985 9999999999999999999999999999999999999999999999999999887 45789
Q ss_pred EeeeccchhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCCCC
Q psy3432 397 GLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDY 459 (695)
Q Consensus 397 ~~~lsNstsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~~~ 459 (695)
+|||+|+|+|+++|+ ++||+||||||||++||||| +||.||++++++|+++|+++..++.
T Consensus 375 ~~~lsNsTaI~~~f~rl~~kFd~m~~krAFvHwY~~eGmee---~eF~EA~e~l~~L~~eY~~~~~~~~ 440 (451)
T 3ryc_A 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDMAALEKDYEEVGVDSV 440 (451)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHTTTCCH---HHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred eEEecCchHHHHHHHHHHHHHHHHhhcceeHhhhcCCccch---hhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999 89999999999999999998 9999999999999999999877653
|
| >3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... | Back alignment and structure |
|---|
| >3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* | Back alignment and structure |
|---|
| >2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} | Back alignment and structure |
|---|
| >2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* | Back alignment and structure |
|---|
| >3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... | Back alignment and structure |
|---|
| >3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... | Back alignment and structure |
|---|
| >3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* | Back alignment and structure |
|---|
| >2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} | Back alignment and structure |
|---|
| >2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* | Back alignment and structure |
|---|
| >2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* | Back alignment and structure |
|---|
| >2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* | Back alignment and structure |
|---|
| >1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 | Back alignment and structure |
|---|
| >2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* | Back alignment and structure |
|---|
| >1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 | Back alignment and structure |
|---|
| >2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 | Back alignment and structure |
|---|
| >1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* | Back alignment and structure |
|---|
| >3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* | Back alignment and structure |
|---|
| >4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* | Back alignment and structure |
|---|
| >3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} | Back alignment and structure |
|---|
| >4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* | Back alignment and structure |
|---|
| >2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* | Back alignment and structure |
|---|
| >2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* | Back alignment and structure |
|---|
| >3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* | Back alignment and structure |
|---|
| >1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 | Back alignment and structure |
|---|
| >2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* | Back alignment and structure |
|---|
| >1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 | Back alignment and structure |
|---|
| >2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 | Back alignment and structure |
|---|
| >1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* | Back alignment and structure |
|---|
| >3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* | Back alignment and structure |
|---|
| >2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* | Back alignment and structure |
|---|
| >2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 695 | ||||
| d1tubb1 | 243 | c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus | 4e-63 | |
| d1tuba1 | 245 | c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus | 1e-60 | |
| d2btoa1 | 244 | c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec | 3e-54 | |
| d1tuba2 | 195 | d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S | 5e-45 | |
| d1tuba2 | 195 | d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S | 4e-44 | |
| d1tubb2 | 184 | d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su | 2e-39 | |
| d1tubb2 | 184 | d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su | 4e-38 | |
| d2btoa2 | 180 | d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth | 9e-35 | |
| d2btoa2 | 180 | d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth | 6e-33 | |
| d2vapa1 | 209 | c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar | 1e-04 | |
| d1ofua1 | 198 | c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps | 2e-04 |
| >d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Tubulin beta-subunit species: Pig (Sus scrofa) [TaxId: 9823]
Score = 208 bits (530), Expect = 4e-63
Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 51/247 (20%)
Query: 22 NNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGY 81
N + + A Y+PRA+L+DLEP + ++ + P+ +++ P+N + G AGNNWA G+
Sbjct: 48 NVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGH 105
Query: 82 SQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 141
Y++G +L + +
Sbjct: 106 ------------------------------------------------YTEGAELVDSVL 117
Query: 142 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEIS 201
D++ +E++ D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++S
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVS 176
Query: 202 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 261
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 262 TSTLRYP 268
T+ LR+P
Sbjct: 237 TTCLRFP 243
|
| >d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 | Back information, alignment and structure |
|---|
| >d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 | Back information, alignment and structure |
|---|
| >d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 | Back information, alignment and structure |
|---|
| >d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 | Back information, alignment and structure |
|---|
| >d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 | Back information, alignment and structure |
|---|
| >d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 | Back information, alignment and structure |
|---|
| >d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 | Back information, alignment and structure |
|---|
| >d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 | Back information, alignment and structure |
|---|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209 | Back information, alignment and structure |
|---|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| d1tubb1 | 243 | Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1tuba1 | 245 | Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 | 100.0 | |
| d2btoa1 | 244 | Tubulin alpha-subunit {Prosthecobacter dejongeii [ | 100.0 | |
| d1tuba2 | 195 | Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 | 100.0 | |
| d1tubb2 | 184 | Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d2btoa2 | 180 | Tubulin alpha-subunit {Prosthecobacter dejongeii [ | 100.0 | |
| d1tuba2 | 195 | Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 | 100.0 | |
| d1tubb2 | 184 | Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d2btoa2 | 180 | Tubulin alpha-subunit {Prosthecobacter dejongeii [ | 100.0 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 99.61 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 99.56 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 99.55 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 99.51 |
| >d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Tubulin beta-subunit species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.4e-57 Score=457.40 Aligned_cols=210 Identities=37% Similarity=0.773 Sum_probs=199.1
Q ss_pred cCCCceecCC--CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccccc
Q psy3432 7 NPENVYLSKD--GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQG 84 (695)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~ 84 (695)
+++|.+.... ..+++++||+|.+.++|+|||||||+||+||+++++++++++|+|++++.++ +|||||||+
T Consensus 31 ~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~~f~~~~~i~~~--~gagNNwA~----- 103 (243)
T d1tubb1 31 DPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAK----- 103 (243)
T ss_dssp SCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSSSCCCCSSSCCCCTT--CCCCSSTHH-----
T ss_pred CCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCccccccCccceEEcc--cCcccceee-----
Confidence 5666554332 3568899999999999999999999999999999999999999999999999 999999999
Q ss_pred chhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeec
Q psy3432 85 KKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSI 163 (695)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl 163 (695)
| |..|+++.|+++|+|||++|+||++|||+++||+
T Consensus 104 --------------------------------------------Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl 139 (243)
T d1tubb1 104 --------------------------------------------GHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSL 139 (243)
T ss_dssp --------------------------------------------HHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCT
T ss_pred --------------------------------------------eeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeec
Confidence 8 4589999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCC
Q psy3432 164 AGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIE 243 (695)
Q Consensus 164 ~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~ 243 (695)
|||||||+|++|+|.|+|+||++.+++++|+|++ ..++++|||||++|+|++|.+++|++++|||++|+++|.++++++
T Consensus 140 ~GGTGSGlGs~l~e~L~d~yp~~~~~~~~V~P~~-~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~~~~~~~ 218 (243)
T d1tubb1 140 GGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLT 218 (243)
T ss_dssp TCSTTTTTHHHHHHHHHHHCSSSCEEECCCCCCT-TCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTTTTSCCS
T ss_pred cCccccchHHHHHHHHhhhcccceEEEEeecCCc-ccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999987 669999999999999999999999999999999999999999999
Q ss_pred CCChHHHhHHHHHhhhccccccccC
Q psy3432 244 NPSFAQINSLVSTIMAVSTSTLRYP 268 (695)
Q Consensus 244 ~~~~~~~N~~ia~~i~~~t~~~Rf~ 268 (695)
.|+|.+||++||++|+++|+++|||
T Consensus 219 ~~s~~~~N~~Ia~~ls~~T~s~RFP 243 (243)
T d1tubb1 219 TPTYGDLNHLVSATMSGVTTCLRFP 243 (243)
T ss_dssp SCCHHHHHHHHHHHHHHHHTBTTBS
T ss_pred CCCHHHHHHHHHHHHHhhhhcccCC
Confidence 9999999999999999999999998
|
| >d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} | Back information, alignment and structure |
|---|
| >d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} | Back information, alignment and structure |
|---|
| >d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} | Back information, alignment and structure |
|---|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|