Psyllid ID: psy3434


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80---
MKSVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR
ccccccccccccccccccccEEccccHHHHHHHHHHcccEEEEEEHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccc
cccEEEEEccccccccccccEEcccccEEEHHHHHHccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHHccccEccc
MKSVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLdntalnriacdrlhienpsfAQINSLVSTIMAVSTSTLR
MKSVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMavststlr
MKSVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR
***VYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA*******
**SVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR
MKSVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR
**SVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSVYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query83 2.2.26 [Sep-21-2011]
Q8VCK3 451 Tubulin gamma-2 chain OS= yes N/A 0.807 0.148 0.850 4e-27
Q9NRH3 451 Tubulin gamma-2 chain OS= yes N/A 0.807 0.148 0.850 7e-27
Q0VCD2 451 Tubulin gamma-1 chain OS= yes N/A 0.807 0.148 0.850 1e-26
Q9XFG3 475 Tubulin gamma chain OS=Ph N/A N/A 0.783 0.136 0.876 1e-26
Q32KM1 451 Tubulin gamma-2 chain OS= yes N/A 0.807 0.148 0.850 1e-26
P23258 451 Tubulin gamma-1 chain OS= yes N/A 0.807 0.148 0.850 1e-26
P23330 451 Tubulin gamma-1 chain OS= N/A N/A 0.819 0.150 0.840 8e-26
P23257 475 Tubulin gamma-1 chain OS= yes N/A 0.783 0.136 0.861 9e-26
O49068 469 Tubulin gamma-2 chain OS= yes N/A 0.783 0.138 0.846 9e-26
Q41807 469 Tubulin gamma-1 chain OS= N/A N/A 0.783 0.138 0.846 9e-26
>sp|Q8VCK3|TBG2_MOUSE Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=1 SV=1 Back     alignment and function desciption
 Score =  119 bits (299), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query: 17  LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
           + DVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237

Query: 77  VSTSTLR 83
            ST+TLR
Sbjct: 238 ASTTTLR 244




Tubulin is the major constituent of microtubules. Gamma tubulin is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. Pericentriolar matrix component that regulates alpha/beta tubulin minus-end nucleation, centrosome duplication and spindle formation.
Mus musculus (taxid: 10090)
>sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1 Back     alignment and function description
>sp|Q0VCD2|TBG1_BOVIN Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XFG3|TBG_PHYPA Tubulin gamma chain OS=Physcomitrella patens subsp. patens GN=TUBG1 PE=3 SV=1 Back     alignment and function description
>sp|Q32KM1|TBG2_BOVIN Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1 Back     alignment and function description
>sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2 Back     alignment and function description
>sp|P23330|TBG1_XENLA Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1 Back     alignment and function description
>sp|P23257|TBG1_DROME Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=2 SV=2 Back     alignment and function description
>sp|O49068|TBG2_ORYSJ Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1 Back     alignment and function description
>sp|Q41807|TBG1_MAIZE Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query83
303281674 476 tubulin gamma chain [Micromonas pusilla 0.783 0.136 0.892 2e-26
345315123 465 PREDICTED: tubulin gamma-2 chain-like, p 0.807 0.144 0.850 6e-26
149054278 455 rCG34621 [Rattus norvegicus] 0.807 0.147 0.850 6e-26
148671946 402 mCG20204 [Mus musculus] 0.807 0.166 0.850 6e-26
444714095 427 Tubulin gamma-1 chain [Tupaia chinensis] 0.915 0.177 0.776 7e-26
431890596 395 Tubulin gamma-1 chain [Pteropus alecto] 0.807 0.169 0.850 8e-26
300797326 476 tubulin gamma-2 chain [Rattus norvegicus 0.807 0.140 0.850 9e-26
426238081 444 PREDICTED: tubulin gamma-1 chain isoform 0.807 0.150 0.850 1e-25
426238085 457 PREDICTED: tubulin gamma-1 chain isoform 0.807 0.146 0.850 1e-25
321457198 462 hypothetical protein DAPPUDRAFT_301492 [ 0.783 0.140 0.907 1e-25
>gi|303281674|ref|XP_003060129.1| tubulin gamma chain [Micromonas pusilla CCMP1545] gi|226458784|gb|EEH56081.1| tubulin gamma chain [Micromonas pusilla CCMP1545] Back     alignment and taxonomy information
 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/65 (89%), Positives = 62/65 (95%)

Query: 19  DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
           DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA DRLHI+NP+FAQ NSLVST+MA S
Sbjct: 182 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIQNPTFAQTNSLVSTVMAAS 241

Query: 79  TSTLR 83
           T+TLR
Sbjct: 242 TTTLR 246




Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Family:

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|345315123|ref|XP_001520119.2| PREDICTED: tubulin gamma-2 chain-like, partial [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|149054278|gb|EDM06095.1| rCG34621 [Rattus norvegicus] Back     alignment and taxonomy information
>gi|148671946|gb|EDL03893.1| mCG20204 [Mus musculus] Back     alignment and taxonomy information
>gi|444714095|gb|ELW54983.1| Tubulin gamma-1 chain [Tupaia chinensis] Back     alignment and taxonomy information
>gi|431890596|gb|ELK01475.1| Tubulin gamma-1 chain [Pteropus alecto] Back     alignment and taxonomy information
>gi|300797326|ref|NP_001178004.1| tubulin gamma-2 chain [Rattus norvegicus] Back     alignment and taxonomy information
>gi|426238081|ref|XP_004012986.1| PREDICTED: tubulin gamma-1 chain isoform 1 [Ovis aries] Back     alignment and taxonomy information
>gi|426238085|ref|XP_004012988.1| PREDICTED: tubulin gamma-1 chain isoform 3 [Ovis aries] Back     alignment and taxonomy information
>gi|321457198|gb|EFX68289.1| hypothetical protein DAPPUDRAFT_301492 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query83
UNIPROTKB|F1N9Y0 420 TUBG1 "Tubulin gamma chain" [G 0.807 0.159 0.850 4.6e-25
UNIPROTKB|K7EIS0265 TUBG1 "Tubulin gamma chain" [H 0.807 0.252 0.850 4.6e-25
RGD|1585798 450 Tubg2 "tubulin, gamma 2" [Ratt 0.807 0.148 0.850 8.8e-25
RGD|1592363 450 LOC688197 "similar to tubulin, 0.807 0.148 0.850 8.8e-25
UNIPROTKB|Q0VCD2 451 TUBG1 "Tubulin gamma-1 chain" 0.807 0.148 0.850 8.9e-25
UNIPROTKB|Q32KM1 451 TUBG2 "Tubulin gamma-2 chain" 0.807 0.148 0.850 8.9e-25
UNIPROTKB|E2RD85 451 TUBG1 "Tubulin gamma chain" [C 0.807 0.148 0.850 8.9e-25
UNIPROTKB|F1PCT3 451 TUBG1 "Tubulin gamma chain" [C 0.807 0.148 0.850 8.9e-25
UNIPROTKB|P23258 451 TUBG1 "Tubulin gamma-1 chain" 0.807 0.148 0.850 8.9e-25
UNIPROTKB|Q9NRH3 451 TUBG2 "Tubulin gamma-2 chain" 0.807 0.148 0.850 8.9e-25
UNIPROTKB|F1N9Y0 TUBG1 "Tubulin gamma chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query:    17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
             + DVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct:   147 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 206

Query:    77 VSTSTLR 83
              ST+TLR
Sbjct:   207 ASTTTLR 213




GO:0003924 "GTPase activity" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
UNIPROTKB|K7EIS0 TUBG1 "Tubulin gamma chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1585798 Tubg2 "tubulin, gamma 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1592363 LOC688197 "similar to tubulin, gamma 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCD2 TUBG1 "Tubulin gamma-1 chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32KM1 TUBG2 "Tubulin gamma-2 chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RD85 TUBG1 "Tubulin gamma chain" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PCT3 TUBG1 "Tubulin gamma chain" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P23258 TUBG1 "Tubulin gamma-1 chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRH3 TUBG2 "Tubulin gamma-2 chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P83887TBG1_MOUSENo assigned EC number0.83580.80720.1485yesN/A
Q9GKK5TBG1_CANFANo assigned EC number0.82080.80720.1485yesN/A
Q55AR3TBG_DICDINo assigned EC number0.64060.77100.1385yesN/A
P25295TBG_SCHPONo assigned EC number0.75380.78310.1457yesN/A
Q8SRD2TBG_ENCCUNo assigned EC number0.61530.78310.1497yesN/A
Q0VCD2TBG1_BOVINNo assigned EC number0.85070.80720.1485yesN/A
P18695TBG_EMENINo assigned EC number0.69230.78310.1431yesN/A
Q9NRH3TBG2_HUMANNo assigned EC number0.85070.80720.1485yesN/A
P34475TBG_CAEELNo assigned EC number0.52300.78310.1463yesN/A
Q8VCK3TBG2_MOUSENo assigned EC number0.85070.80720.1485yesN/A
P38557TBG1_ARATHNo assigned EC number0.83070.78310.1371yesN/A
P23257TBG1_DROMENo assigned EC number0.86150.78310.1368yesN/A
P23258TBG1_HUMANNo assigned EC number0.85070.80720.1485yesN/A
P38558TBG2_ARATHNo assigned EC number0.84610.78310.1371yesN/A
O49068TBG2_ORYSJNo assigned EC number0.84610.78310.1385yesN/A
Q32KM1TBG2_BOVINNo assigned EC number0.85070.80720.1485yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query83
PLN00222 454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-39
cd02188 431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 3e-39
COG5023 443 COG5023, COG5023, Tubulin [Cytoskeleton] 9e-27
cd00286 328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 3e-22
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 5e-18
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 2e-17
cd02187 425 cd02187, beta_tubulin, The tubulin superfamily inc 2e-14
PTZ00010 445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 2e-13
cd02186 434 cd02186, alpha_tubulin, The tubulin superfamily in 5e-13
PLN00220 447 PLN00220, PLN00220, tubulin beta chain; Provisiona 5e-13
PLN00221 450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-11
cd02189 446 cd02189, delta_tubulin, The tubulin superfamily in 2e-11
PTZ00335 448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 3e-11
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 5e-11
PTZ00387 465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 5e-08
cd02190 379 cd02190, epsilon_tubulin, The tubulin superfamily 4e-07
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
 Score =  135 bits (341), Expect = 1e-39
 Identities = 57/65 (87%), Positives = 62/65 (95%)

Query: 19  DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
           DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA DRLH+ENP+FAQ NSLVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239

Query: 79  TSTLR 83
           T+TLR
Sbjct: 240 TTTLR 244


Length = 454

>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 83
COG5023 443 Tubulin [Cytoskeleton] 99.94
PLN00221 450 tubulin alpha chain; Provisional 99.83
PLN00222 454 tubulin gamma chain; Provisional 99.83
PTZ00010 445 tubulin beta chain; Provisional 99.83
KOG1374|consensus 448 99.82
cd02187 425 beta_tubulin The tubulin superfamily includes five 99.79
cd02188 431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 99.79
KOG1376|consensus 407 99.78
PTZ00335 448 tubulin alpha chain; Provisional 99.78
cd02186 434 alpha_tubulin The tubulin superfamily includes fiv 99.77
PLN00220 447 tubulin beta chain; Provisional 99.76
cd02189 446 delta_tubulin The tubulin superfamily includes fiv 99.74
PTZ00387 465 epsilon tubulin; Provisional 99.68
cd06059 382 Tubulin The tubulin superfamily includes five dist 99.6
cd00286 328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 99.55
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.54
cd02190 379 epsilon_tubulin The tubulin superfamily includes f 99.46
cd02191 303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.27
KOG1375|consensus 369 99.22
cd02201 304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.13
TIGR00065 349 ftsZ cell division protein FtsZ. This family consi 99.12
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 99.05
cd02202 349 FtsZ_type2 FtsZ is a GTPase that is similar to the 98.99
PRK13018 378 cell division protein FtsZ; Provisional 98.88
PRK09330 384 cell division protein FtsZ; Validated 98.38
cd06060 493 misato Human Misato shows similarity with Tubulin/ 96.83
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information
Probab=99.94  E-value=3.4e-27  Score=174.05  Aligned_cols=75  Identities=47%  Similarity=0.705  Sum_probs=72.2

Q ss_pred             cccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434           9 LGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR   83 (83)
Q Consensus         9 ~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR   83 (83)
                      --+.+.|++|++||||||++|++|.|+|++||+|++||+||++||.+.|++++|+|+++|+|||++||++|+++|
T Consensus       167 fSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtslR  241 (443)
T COG5023         167 FSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSLR  241 (443)
T ss_pred             EEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhheee
Confidence            346677999999999999999999999999999999999999999999999999999999999999999999998



>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query83
1z5v_A 474 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-27
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-27
2btq_B 426 Structure Of Btubab Heterodimer From Prosthecobacte 5e-10
4i4t_A 450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-08
4drx_A 437 Gtp-Tubulin In Complex With A Darpin Length = 437 2e-08
3ryc_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-08
4ffb_A 447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 2e-08
3du7_A 449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 3e-08
1z2b_A 448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 5e-08
3hkb_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 5e-08
2xrp_B 452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 5e-08
1ffx_A 451 Tubulin:stathmin-Like Domain Complex Length = 451 5e-08
1jff_A 451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 5e-08
1sa0_A 451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 5e-08
1tub_A 440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 5e-08
4ffb_B 463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-07
1tub_B 427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-07
1ffx_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-07
2xrp_A 445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-07
4i4t_B 445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-07
3du7_B 445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-07
4f61_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-07
1z2b_B 445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-07
4drx_B 431 Gtp-Tubulin In Complex With A Darpin Length = 431 2e-07
3ryc_B 445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-07
2bto_A 473 Structure Of Btuba From Prosthecobacter Dejongeii L 2e-06
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure

Iteration: 1

Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 56/67 (83%), Positives = 62/67 (92%) Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76 + DVVVQPYNSLLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237 Query: 77 VSTSTLR 83 ST+TLR Sbjct: 238 ASTTTLR 244
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query83
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-31
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 2e-27
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 1e-26
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 4e-26
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 2e-25
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
 Score =  113 bits (284), Expect = 1e-31
 Identities = 56/65 (86%), Positives = 61/65 (93%)

Query: 19  DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
           DVVVQPYNSLLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239

Query: 79  TSTLR 83
           T+TLR
Sbjct: 240 TTTLR 244


>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query83
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 99.86
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 99.85
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 99.73
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 99.71
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 99.68
2r75_1 338 Cell division protein FTSZ; GTPase, tubulin-like, 99.6
1ofu_A 320 FTSZ, cell division protein FTSZ; bacterial cell d 99.57
2vxy_A 382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.56
1w5f_A 353 Cell division protein FTSZ; complete proteome, GTP 99.54
2vap_A 364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.54
2vaw_A 394 FTSZ, cell division protein FTSZ; bacterial cell d 99.52
1rq2_A 382 Cell division protein FTSZ; cell cycle, tubulin, G 99.51
4dxd_A 396 Cell division protein FTSZ; rossmann fold, GTPase, 99.46
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.05
3m89_A 427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 98.42
4ei7_A 389 Plasmid replication protein REPX; GTP hydrolase, p 93.61
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=99.86  E-value=6.6e-23  Score=153.46  Aligned_cols=76  Identities=34%  Similarity=0.501  Sum_probs=72.9

Q ss_pred             ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434           8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR   83 (83)
Q Consensus         8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR   83 (83)
                      +.+|-+.|+++++||||||++|+++.|.+++|+++++||++|++||.+.+++++|+|.++|++|||+++++|+++|
T Consensus       166 ~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~slR  241 (445)
T 3ryc_B          166 TFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR  241 (445)
T ss_dssp             EEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhccccc
Confidence            5667788899999999999999999999999999999999999999999999999999999999999999999986



>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 83
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-24
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-24
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 7e-24
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]
 Score = 90.4 bits (224), Expect = 1e-24
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 19  DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
           D VV+PYN+ L++ +L  N D    +DN AL  I    L +  P++  +N LVS  M+  
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236

Query: 79  TSTLR 83
           T+ LR
Sbjct: 237 TTCLR 241


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query83
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.91
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.91
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.91
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 94.52
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 94.01
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 92.26
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 91.39
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]
Probab=99.91  E-value=9.6e-26  Score=156.31  Aligned_cols=75  Identities=29%  Similarity=0.472  Sum_probs=71.2

Q ss_pred             cccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434           9 LGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR   83 (83)
Q Consensus         9 ~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR   83 (83)
                      ..|-+.++.+++||||||++|++++|++++|+++++||++|+++|.+.++++.|+|++||++||+.++++|+++|
T Consensus       169 ~~V~P~~~~~~~vvqpYNsiLsl~~L~e~sD~~~~~dN~al~~i~~~~~~~~~~s~~~lN~~Ia~~ls~~T~s~R  243 (244)
T d2btoa1         169 CAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMR  243 (244)
T ss_dssp             EEEECCCCSSCEESHHHHHHHHHHHHHHTCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcccccccHHHHHHHHHHhcCceEEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Confidence            345567788999999999999999999999999999999999999999999999999999999999999999998



>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure