Psyllid ID: psy3438

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLASEALKAR
Secondary Structure (PSIPRED)
ccEEEEEccccEEEEEEEEccEEEEEEccccccccccEEEEccccEEEEcccccccccHHHHHHHcccccEEEEEccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEccccEEEEEEEEccEEEEcccccccccEEccEEEccccEEEccccHcEcEccccEEEEEcccccEEcccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpaigidlgttYSCVAVFQQGKVEIIandqgnrttpsyvaftdteRLIGLRKFWFAYFTTYQvdltgepdqvclsglpdsdwlASEALKAR
Flexible Loop (DISEMBL)
mpaigidlgttYSCVAVFQQGKVEiiandqgnrttpsyvaFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSglpdsdwlASEALKAR
Low Complexity Region (SEG)
MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLASEALKAR
Disordered region (IsUnstruct)
***IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPD**W*********
Disordered Region (DISOPRED)
MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLASEA****
Disordered Region (DISEMBL)
MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLASEALKAR
Disordered Region (DISPRO)
*PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLASEAL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLASEALKAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
O97125	635	Heat shock protein 68 OS=	yes	N/A	0.538	0.077	0.938	2e-21
P22623	372	Heat shock 70 kDa protein	N/A	N/A	0.527	0.129	0.937	2e-21
Q9BIR7	641	Major heat shock 70 kDa p	no	N/A	0.538	0.076	0.918	3e-21
Q9BIS2	641	Major heat shock 70 kDa p	no	N/A	0.538	0.076	0.918	3e-21
P54652	639	Heat shock-related 70 kDa	yes	N/A	0.527	0.075	0.958	3e-21
Q8INI8	641	Major heat shock 70 kDa p	no	N/A	0.538	0.076	0.918	3e-21
Q9VG58	641	Major heat shock 70 kDa p	no	N/A	0.538	0.076	0.918	3e-21
P14659	633	Heat shock-related 70 kDa	yes	N/A	0.527	0.075	0.958	3e-21
P17156	633	Heat shock-related 70 kDa	yes	N/A	0.527	0.075	0.958	3e-21
P08106	634	Heat shock 70 kDa protein	yes	N/A	0.527	0.075	0.958	3e-21

>sp|O97125|HSP68_DROME Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVFQYGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Drosophila melanogaster (taxid: 7227)

>sp|P22623|HSP72_PARLI Heat shock 70 kDa protein II (Fragment) OS=Paracentrotus lividus GN=HSP70II PE=3 SV=1

 Score =  100 bits (249), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

Paracentrotus lividus (taxid: 7656)

>sp|Q9BIR7|HSP75_DROME Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV V+Q GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Drosophila melanogaster (taxid: 7227)

>sp|Q9BIS2|HSP73_DROME Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV V+Q GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Drosophila melanogaster (taxid: 7227)

>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/48 (95%), Positives = 46/48 (95%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 53

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.

Homo sapiens (taxid: 9606)

>sp|Q8INI8|HSP72_DROME Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV V+Q GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Drosophila melanogaster (taxid: 7227)

>sp|Q9VG58|HSP74_DROME Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV V+Q GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Drosophila melanogaster (taxid: 7227)

>sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/48 (95%), Positives = 46/48 (95%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 53

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.

Rattus norvegicus (taxid: 10116)

>sp|P17156|HSP72_MOUSE Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=2

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/48 (95%), Positives = 46/48 (95%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 53

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.

Mus musculus (taxid: 10090)

>sp|P08106|HSP70_CHICK Heat shock 70 kDa protein OS=Gallus gallus PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/48 (95%), Positives = 46/48 (95%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 53

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
153861719	645	heat shock protein 70 [Fasciola hepatica	0.538	0.075	0.959	2e-20
153861697	645	heat shock protein 70 [Fasciola gigantic	0.538	0.075	0.959	2e-20
254575046	404	Chain A, Crystal Structure Of The Human	0.538	0.121	0.959	3e-20
349973538	650	heat shock 70kDa protein 1/8 [Clonorchis	0.538	0.075	0.959	3e-20
358334271	403	heat shock 70kDa protein 1/8 [Clonorchis	0.538	0.121	0.938	3e-20
187817586	655	heat shock protein 70 [Echinostoma capro	0.538	0.074	0.938	3e-20
358334304	573	heat shock 70kDa protein 1/8, partial [C	0.538	0.085	0.938	3e-20
194742690	643	GF17965 [Drosophila ananassae] gi|190626	0.538	0.076	0.938	4e-20
37596275	644	heat shock protein 68 [Drosophila lummei	0.538	0.076	0.938	4e-20
195400086	644	GJ14196 [Drosophila virilis] gi|19414220	0.538	0.076	0.938	4e-20

>gi|153861719|gb|ABS52704.1| heat shock protein 70 [Fasciola hepatica]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

Source: Fasciola hepatica

Species: Fasciola hepatica

Genus: Fasciola

Family: Fasciolidae

Order: Echinostomida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|153861697|gb|ABS52703.1| heat shock protein 70 [Fasciola gigantica]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

Source: Fasciola gigantica

Species: Fasciola gigantica

Genus: Fasciola

Family: Fasciolidae

Order: Echinostomida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|254575046|pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 71

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|349973538|dbj|GAA35873.1| heat shock 70kDa protein 1/8 [Clonorchis sinensis]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|358334271|dbj|GAA52703.1| heat shock 70kDa protein 1/8 [Clonorchis sinensis]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 1  MPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|187817586|emb|CAM97394.1| heat shock protein 70 [Echinostoma caproni]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 1  MPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

Source: Echinostoma caproni

Species: Echinostoma caproni

Genus: Echinostoma

Family: Echinostomatidae

Order: Echinostomida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|358334304|dbj|GAA52730.1| heat shock 70kDa protein 1/8, partial [Clonorchis sinensis]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1   MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
           MPA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 71  MPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 119

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|194742690|ref|XP_001953834.1| GF17965 [Drosophila ananassae] gi|190626871|gb|EDV42395.1| GF17965 [Drosophila ananassae]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|37596275|gb|AAQ94877.1| heat shock protein 68 [Drosophila lummei] gi|37596276|gb|AAQ94878.1| heat shock protein 68 [Drosophila lummei]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Source: Drosophila lummei

Species: Drosophila lummei

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400086|ref|XP_002058649.1| GJ14196 [Drosophila virilis] gi|194142209|gb|EDW58617.1| GJ14196 [Drosophila virilis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTD+ERLIG
Sbjct: 1  MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIG 49

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
UNIPROTKB|Q7ZSX8	120	hsp70 "Uncharacterized protein	0.527	0.4	0.958	4.4e-20
UNIPROTKB|E9PI65	168	HSPA8 "Heat shock cognate 71 k	0.527	0.285	0.937	5.7e-20
UNIPROTKB|E9PK54	184	HSPA8 "Heat shock cognate 71 k	0.527	0.260	0.937	5.7e-20
UNIPROTKB|E9PLF4	187	HSPA8 "Heat shock cognate 71 k	0.527	0.256	0.937	5.7e-20
UNIPROTKB|E9PN25	132	HSPA8 "Heat shock cognate 71 k	0.527	0.363	0.937	5.7e-20
UNIPROTKB|E9PPY6	137	HSPA8 "Heat shock cognate 71 k	0.527	0.350	0.937	5.7e-20
UNIPROTKB|E9PQK7	178	HSPA8 "Heat shock cognate 71 k	0.527	0.269	0.937	5.7e-20
UNIPROTKB|E9PQQ4	171	HSPA8 "Heat shock cognate 71 k	0.527	0.280	0.937	5.7e-20
UNIPROTKB|E7EP11	232	HSPA1A "Heat shock 70 kDa prot	0.516	0.202	0.957	2.5e-19
UNIPROTKB|H0YIE7	232	HSPA1L "Heat shock 70 kDa prot	0.516	0.202	0.957	2.5e-19

UNIPROTKB|Q7ZSX8 hsp70 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 46/48 (95%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     6 PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 53

GO:0005524 "ATP binding" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0031662 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M" evidence=IEA

GO:0036128 "CatSper complex" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0070194 "synaptonemal complex disassembly" evidence=IEA

UNIPROTKB|E9PI65 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E9PK54 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IEA

UNIPROTKB|E9PLF4 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IEA

UNIPROTKB|E9PN25 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IEA

UNIPROTKB|E9PPY6 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IEA

UNIPROTKB|E9PQK7 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IEA

UNIPROTKB|E9PQQ4 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query:     2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IEA

UNIPROTKB|E7EP11 HSPA1A "Heat shock 70 kDa protein 1A/1B" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/47 (95%), Positives = 45/47 (95%)

Query:     3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H0YIE7 HSPA1L "Heat shock 70 kDa protein 1-like" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/47 (95%), Positives = 45/47 (95%)

Query:     3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct:     5 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 51

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P08107	HSP71_HUMAN	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
P08106	HSP70_CHICK	No assigned EC number	0.9583	0.5274	0.0757	yes	N/A
Q28222	HSP71_CHLAE	No assigned EC number	0.9574	0.5164	0.0736	N/A	N/A
O73885	HSP7C_CHICK	No assigned EC number	0.9375	0.5274	0.0743	no	N/A
Q71U34	HSP7C_SAGOE	No assigned EC number	0.9375	0.5274	0.0743	N/A	N/A
P08108	HSP70_ONCMY	No assigned EC number	0.9166	0.5274	0.0737	N/A	N/A
P22623	HSP72_PARLI	No assigned EC number	0.9375	0.5274	0.1290	N/A	N/A
Q24789	HSP70_ECHGR	No assigned EC number	0.9166	0.5274	0.0721	N/A	N/A
P82910	HSP70_DROME	No assigned EC number	0.9183	0.5384	0.0763	no	N/A
P14659	HSP72_RAT	No assigned EC number	0.9583	0.5274	0.0758	yes	N/A
P47773	HSP7C_ICTPU	No assigned EC number	0.9166	0.5274	0.0739	N/A	N/A
Q91233	HSP70_ONCTS	No assigned EC number	0.9375	0.5274	0.0745	N/A	N/A
Q9GSU4	HSP72_DROSI	No assigned EC number	0.9183	0.5384	0.0762	N/A	N/A
P63018	HSP7C_RAT	No assigned EC number	0.9375	0.5274	0.0743	no	N/A
P63017	HSP7C_MOUSE	No assigned EC number	0.9375	0.5274	0.0743	no	N/A
P16627	HS71L_MOUSE	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
Q9BIR7	HSP75_DROME	No assigned EC number	0.9183	0.5384	0.0764	no	N/A
Q9U639	HSP7D_MANSE	No assigned EC number	0.9166	0.5274	0.0736	N/A	N/A
P19378	HSP7C_CRIGR	No assigned EC number	0.9375	0.5274	0.0743	no	N/A
Q4U0F3	HS71B_BOSMU	No assigned EC number	0.9574	0.5164	0.0733	N/A	N/A
Q9BIS2	HSP73_DROME	No assigned EC number	0.9183	0.5384	0.0764	no	N/A
Q06248	HSP74_PARLI	No assigned EC number	0.9375	0.5274	0.0751	N/A	N/A
Q8INI8	HSP72_DROME	No assigned EC number	0.9183	0.5384	0.0764	no	N/A
Q6S4N2	HS71B_PIG	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
Q9VG58	HSP74_DROME	No assigned EC number	0.9183	0.5384	0.0764	no	N/A
Q9TUG3	HSP72_CAPHI	No assigned EC number	0.9583	0.5274	0.0754	N/A	N/A
Q05944	HSP70_HYDVU	No assigned EC number	0.9375	0.5274	0.0733	N/A	N/A
Q90473	HSP7C_DANRE	No assigned EC number	0.9375	0.5274	0.0739	yes	N/A
P54652	HSP72_HUMAN	No assigned EC number	0.9583	0.5274	0.0751	yes	N/A
Q5R7D3	HSP71_PONAB	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
P02825	HSP71_DROME	No assigned EC number	0.9183	0.5384	0.0763	no	N/A
Q5NVM9	HSP7C_PONAB	No assigned EC number	0.9375	0.5274	0.0743	no	N/A
A2Q0Z1	HSP7C_HORSE	No assigned EC number	0.9375	0.5274	0.0743	yes	N/A
Q27975	HS71A_BOVIN	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
P17156	HSP72_MOUSE	No assigned EC number	0.9583	0.5274	0.0758	yes	N/A
Q61696	HS71A_MOUSE	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
Q7YQC6	HSP71_CANFA	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
Q9W6Y1	HSP7C_ORYLA	No assigned EC number	0.9375	0.5274	0.0699	N/A	N/A
P17879	HS71B_MOUSE	No assigned EC number	0.9574	0.5164	0.0732	no	N/A
P55063	HS71L_RAT	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
P11147	HSP7D_DROME	No assigned EC number	0.9375	0.5274	0.0737	no	N/A
Q07439	HSP71_RAT	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
O97125	HSP68_DROME	No assigned EC number	0.9387	0.5384	0.0771	yes	N/A
P11142	HSP7C_HUMAN	No assigned EC number	0.9375	0.5274	0.0743	no	N/A
Q27965	HS71B_BOVIN	No assigned EC number	0.9574	0.5164	0.0733	no	N/A
P19120	HSP7C_BOVIN	No assigned EC number	0.9375	0.5274	0.0738	yes	N/A
P34933	HSP72_BOVIN	No assigned EC number	0.9583	0.5274	0.0754	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	8e-34
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	6e-31
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	2e-29
pfam00012	598	pfam00012, HSP70, Hsp70 protein	5e-28
PRK00290	627	PRK00290, dnaK, molecular chaperone DnaK; Provisio	7e-21
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	1e-18
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	2e-18
TIGR02350	595	TIGR02350, prok_dnaK, chaperone protein DnaK	3e-18
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	2e-16
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	5e-16
cd11734	373	cd11734, Ssq1_like_NBD, Nucleotide-binding domain	8e-16
cd11733	377	cd11733, HSPA9-like_NBD, Nucleotide-binding domain	8e-16
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	1e-15
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	1e-14
PRK13410	668	PRK13410, PRK13410, molecular chaperone DnaK; Prov	4e-14
PTZ00400	663	PTZ00400, PTZ00400, DnaK-type molecular chaperone;	6e-14
PTZ00186	657	PTZ00186, PTZ00186, heat shock 70 kDa precursor pr	1e-13
cd10237	417	cd10237, HSPA13-like_NBD, Nucleotide-binding domai	2e-13
cd10235	339	cd10235, HscC_like_NBD, Nucleotide-binding domain	2e-12
CHL00094	621	CHL00094, dnaK, heat shock protein 70	3e-12
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	4e-12
cd10236	355	cd10236, HscA_like_NBD, Nucleotide-binding domain	8e-12
PRK05183	616	PRK05183, hscA, chaperone protein HscA; Provisiona	3e-10
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	3e-09
TIGR01991	599	TIGR01991, HscA, Fe-S protein assembly chaperone H	3e-09
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	2e-08
PRK01433	595	PRK01433, hscA, chaperone protein HscA; Provisiona	3e-07
cd11739	383	cd11739, HSPH1_NBD, Nucleotide-binding domain of H	7e-07
cd11737	383	cd11737, HSPA4_NBD, Nucleotide-binding domain of H	4e-06
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	5e-06
cd10231	415	cd10231, YegD_like, Escherichia coli YegD, a putat	2e-05
cd11738	383	cd11738, HSPA4L_NBD, Nucleotide-binding domain of	2e-04

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score =  118 bits (298), Expect = 8e-34
 Identities = 45/47 (95%), Positives = 45/47 (95%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 1  AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 47

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score =  111 bits (279), Expect = 6e-31
 Identities = 40/48 (83%), Positives = 42/48 (87%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
            IGIDLGTTYSCV VF+ G+VEIIANDQGNR TPSYVAFTD ERLIG
Sbjct: 2  TVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTDGERLIG 49

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score =  108 bits (272), Expect = 2e-29
 Identities = 42/48 (87%), Positives = 44/48 (91%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PAIGIDLGTTYSCV V++   VEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIG 52

Length = 653

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score =  105 bits (263), Expect = 5e-28
 Identities = 34/47 (72%), Positives = 38/47 (80%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
           IGIDLGTT SCVAV + G  E+IAND+GNRTTPS VAFT  ERL+G
Sbjct: 1  VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERLVG 47

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional

 Score = 84.8 bits (211), Expect = 7e-21
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
           IGIDLGTT SCVAV + G+ ++I N +G RTTPS VAFT   ERL+G
Sbjct: 4  IIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVG 51

Length = 627

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
           IGIDLGTT SCVAV + G+  +I N +G+RTTPS VAFT   ERL+G
Sbjct: 4  IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVG 51

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 4  IGIDLGTTYSCVAVFQ-QGKVEIIANDQGNRTTPSYVAFTDTERLI 48
          IGIDLGTT S VA     GK EII N +G+RTTPS V F     ++
Sbjct: 1  IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVL 46

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK

 Score = 77.4 bits (191), Expect = 3e-18
 Identities = 30/48 (62%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
           IGIDLGTT SCVAV + G+  +I N +G RTTPS VAFT   ERL+G
Sbjct: 2  IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVG 49

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 1  MPAIGIDLGTTYSCVAVFQ-QGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
            AIGIDLGTT S VAV +  G  ++I N +G R TPS VAF+ + E L+G
Sbjct: 5  KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVG 55

Length = 579

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 70.6 bits (174), Expect = 5e-16
 Identities = 22/48 (45%), Positives = 33/48 (68%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
            +GID G   S VAV ++G ++++AN+  NR TPS V+F + +RLIG
Sbjct: 1  SVVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLIG 48

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins

 Score = 70.2 bits (172), Expect = 8e-16
 Identities = 28/46 (60%), Positives = 32/46 (69%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          IGIDLGTT SCVAV  +    II N +G RTTPS V+FT T  L+G
Sbjct: 5  IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGILVG 50

Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373

>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins

 Score = 70.1 bits (172), Expect = 8e-16
 Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGL 50
            IGIDLGTT SCVAV +    ++I N +G RTTPS VAFT D ERL+G+
Sbjct: 3  AVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGM 52

This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 25/48 (52%), Positives = 38/48 (79%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGL 50
          AIG+  G T +C+AV++ G+ +++AND G+R TP+ VAFTDTE ++GL
Sbjct: 2  AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGL 49

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
          IGIDLGTT SCVAV + GK  +I N +G RTTPS V F  + +RL+G
Sbjct: 5  IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVG 51

Length = 653

>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional

 Score = 65.4 bits (160), Expect = 4e-14
 Identities = 29/47 (61%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
          +GIDLGTT S VAV + GK  +IAN +G RTTPS V FT D E L+G
Sbjct: 5  VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVG 51

Length = 668

>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional

 Score = 65.2 bits (159), Expect = 6e-14
 Identities = 26/48 (54%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGL 50
          +GIDLGTT SCVA+ +  + ++I N +G RTTPS VAFT+  +RL+G+
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGI 91

Length = 663

>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 27/47 (57%), Positives = 34/47 (72%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGL 50
          IG+DLGTTYSCVA     K  ++ N +G RTTPS VAF  +E+L+GL
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGL 76

Length = 657

>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 4  IGIDLGTTYSCVAVFQ--QGKVEIIANDQGNRTTPSYVAFTDTERLIGLR 51
          IGIDLGTTYS V V+Q   G+ +II ++ G ++ PS VAFT    L+G +
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYK 72

Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417

>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLI 48
          IGIDLGTT S VAV+Q GK  +I N  G   TPS V+  +   ++
Sbjct: 1  IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEIL 45

This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339

>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
          +GIDLGTT S VAV + GK  +I N +G RTTPS VA+T   + L+G
Sbjct: 5  VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVG 51

Length = 621

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
          +GIDLGTT S VA  + GK  I+ N +G RTTPS VA+T   +RL+G
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVG 88

Length = 673

>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins

 Score = 58.8 bits (143), Expect = 8e-12
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTT S VA    GKV+I+ ++ G    PS V + D    +G
Sbjct: 2  AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGGISVG 48

Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355

>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          A+GIDLGTT S VA  + G+ E++ ++QG    PS V + +    +G
Sbjct: 21 AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVG 67

Length = 616

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
            IGI+ G TYS +A   QGK ++IAN+ G R  PS +++   +   G
Sbjct: 1  TVIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYHG 48

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERLIG 49
          A+GIDLGTT S VA  + G  E++ + +G    PS V +  D    +G
Sbjct: 1  AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVG 48

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGK-VEIIANDQGNRTTPSYVAFTDTERLIG 49
          +GIDLG+ +  VA+ + G   EI+ N++  R TPS VAF   ERL G
Sbjct: 1  LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFG 47

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRK 52
          A+GID GTT S +A+    KV++I +       P+ + FT     IG  K
Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK 70

Length = 595

>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1

 Score = 44.9 bits (106), Expect = 7e-07
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGL 50
          +G D+G     +AV + G +E +AN+  +R TPS ++F    R IG+
Sbjct: 3  VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTIGV 49

Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          +GIDLG     VAV + G +E IAN+  +R TP+ ++F    R IG
Sbjct: 3  VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIG 48

Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
           G+DLG   S +AV +   ++I+ N+  NR+TPS V F    R +G
Sbjct: 1  FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 46

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLR 51
          +GID GT+ S VAV + G+  ++  + G+ T PS + F   E  +   
Sbjct: 1  LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALERE 48

This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415

>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          +GIDLG     +AV + G +E IAN+  +R TP+ ++     R IG
Sbjct: 3  VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIG 48

Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
PRK11678	450	putative chaperone; Provisional	99.75
KOG0100|consensus	663		99.69
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.65
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.64
PRK05183	616	hscA chaperone protein HscA; Provisional	99.64
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.64
PRK13410	668	molecular chaperone DnaK; Provisional	99.63
PRK13411	653	molecular chaperone DnaK; Provisional	99.63
CHL00094	621	dnaK heat shock protein 70	99.63
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.63
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.62
PLN03184	673	chloroplast Hsp70; Provisional	99.62
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.62
PRK01433	595	hscA chaperone protein HscA; Provisional	99.58
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.55
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.54
KOG0102|consensus	640		99.34
KOG0101|consensus	620		99.32
KOG0103|consensus	727		99.03
KOG0104|consensus	902		98.63
PRK13929	335	rod-share determining protein MreBH; Provisional	98.3
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	98.29
PRK13928	336	rod shape-determining protein Mbl; Provisional	98.11
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	98.11
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	98.04
PRK13930	335	rod shape-determining protein MreB; Provisional	97.9
PRK13927	334	rod shape-determining protein MreB; Provisional	97.78
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	93.84
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	93.77
PRK10331	470	L-fuculokinase; Provisional	92.44
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	92.27
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	91.95
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	91.69
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	91.66
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	91.56
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	91.25
PF03652	135	UPF0081: Uncharacterised protein family (UPF0081);	91.18
PRK04123	548	ribulokinase; Provisional	91.04
PTZ00294	504	glycerol kinase-like protein; Provisional	90.91
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	90.91
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	90.78
PRK15027	484	xylulokinase; Provisional	90.77
PRK00039	164	ruvC Holliday junction resolvase; Reviewed	90.49
PLN00130	213	succinate dehydrogenase (SDH3); Provisional	90.02
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	89.88
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	89.38
cd00529	154	RuvC_resolvase Holliday junction resolvases (HJRs)	89.28
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	89.22
PRK00047	498	glpK glycerol kinase; Provisional	89.07
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	88.81
PLN02295	512	glycerol kinase	88.73
PTZ00280	414	Actin-related protein 3; Provisional	88.18
PRK13321	256	pantothenate kinase; Reviewed	85.65
PRK13318	258	pantothenate kinase; Reviewed	85.43
PRK00109	138	Holliday junction resolvase-like protein; Reviewed	85.12
PF02075	149	RuvC: Crossover junction endodeoxyribonuclease Ruv	84.37
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	82.16
PRK00292	316	glk glucokinase; Provisional	81.3
PLN02669	556	xylulokinase	81.19
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	81.01
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	80.7
COG0816	141	Predicted endonuclease involved in recombination (	80.13

>PRK11678 putative chaperone; Provisional

Probab=99.75  E-value=1.5e-18  Score=132.58  Aligned_cols=80  Identities=24%  Similarity=0.218  Sum_probs=68.8

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc---------------------------------------
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT---------------------------------------   42 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~---------------------------------------   42 (91)
                      +++|||||||||+||+++++++++++++.+.+.+||+|+|.                                       
T Consensus         1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T PRK11678          1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID   80 (450)
T ss_pred             CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence            36899999999999999999999999999999999999994                                       


Q ss_pred             --CCeeeeccchhhccccceeccc-CCCCccccccccCCCCCCCcee
Q psy3438          43 --DTERLIGLRKFWFAYFTTYQVD-LTGEPDQVCLSGLPDSDWLASE   86 (91)
Q Consensus        43 --~~~~~vG~~A~~~~~~~~~~~~-~~gr~~~s~k~~lg~~~~~~~~   86 (91)
                        +++.+||.+|++     .|+.+ ..|++++|+||+||.+.+.+.+
T Consensus        81 ~~~~~~~~G~~A~~-----~~~~~p~~~r~i~s~Kr~lg~~~~~~~~  122 (450)
T PRK11678         81 VTAQSVFFGLAALA-----QYLEDPEEVYFVKSPKSFLGASGLKPQQ  122 (450)
T ss_pred             ccccccchhHHHHH-----hhccCCCCceEEecchhhhccCCCCccc
Confidence              446889999994     44443 6788999999999998887654

>KOG0100|consensus

Probab=99.69  E-value=2.2e-17  Score=125.43  Aligned_cols=55  Identities=71%  Similarity=1.035  Sum_probs=53.3

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA   56 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~   56 (91)
                      ++||||||||||||+++++|+++|+.|++|+|.+||+|+|++.+++||.+|+++.
T Consensus        37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~   91 (663)
T KOG0100|consen   37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQL   91 (663)
T ss_pred             eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhccc
Confidence            5899999999999999999999999999999999999999988999999999987

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.65  E-value=1.9e-16  Score=124.53  Aligned_cols=74  Identities=45%  Similarity=0.529  Sum_probs=61.8

Q ss_pred             CC-eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCC
Q psy3438           1 MP-AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLP   78 (91)
Q Consensus         1 m~-~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg   78 (91)
                      |. ++|||||||||+||++++|++++++|..|++.+||+|+|. +++++||.+|+.++.-      ...+.+..+||+||
T Consensus         1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~------~p~~~i~~~Kr~iG   74 (627)
T PRK00290          1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT------NPENTIFSIKRLMG   74 (627)
T ss_pred             CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhh------CchhhHHHHHHHhC
Confidence            53 8999999999999999999999999999999999999997 6789999999976421      22345567788888


Q ss_pred             CC
Q psy3438          79 DS   80 (91)
Q Consensus        79 ~~   80 (91)
                      .+
T Consensus        75 ~~   76 (627)
T PRK00290         75 RR   76 (627)
T ss_pred             CC
Confidence            65

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.64  E-value=3e-16  Score=124.11  Aligned_cols=74  Identities=57%  Similarity=0.683  Sum_probs=60.4

Q ss_pred             CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      +.++|||||||||+||+++++++++++|+.|++.+||+|+|.+++++||++|+.+..-      ...+.+..+||+||.+
T Consensus         4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~   77 (653)
T PTZ00009          4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAR------NPENTVFDAKRLIGRK   77 (653)
T ss_pred             ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhh------CcccEEhhhHHHhCCC
Confidence            4689999999999999999999999999999999999999998889999999976521      2223444556666653

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.64  E-value=3.6e-16  Score=123.03  Aligned_cols=73  Identities=29%  Similarity=0.300  Sum_probs=60.9

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .+||||||||||+||++.+|++++++|..|++.+||+|+|.++.++||.+|+.++..      ...+.+.++||+||.+
T Consensus        20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~   92 (616)
T PRK05183         20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQ------DPKNTISSVKRFMGRS   92 (616)
T ss_pred             eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHh------CchhhHHHHHHHhCCC
Confidence            479999999999999999999999999999999999999987779999999976521      2234556677777764

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.64  E-value=5e-16  Score=123.13  Aligned_cols=73  Identities=38%  Similarity=0.501  Sum_probs=60.1

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||+++++++++++|..|++.+||+|+|. +++++||.+|+.++.-      ...+.+..+||+||.+
T Consensus        42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~  115 (663)
T PTZ00400         42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVT------NPENTVFATKRLIGRR  115 (663)
T ss_pred             cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHh------CCcceehhhhhhcCCC
Confidence            48999999999999999999999999999999999999997 5689999999976421      2234455667777764

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.63  E-value=4.7e-16  Score=123.47  Aligned_cols=73  Identities=40%  Similarity=0.407  Sum_probs=60.9

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++++|++.+++|..|.+.+||+|+|. +++++||.+|++++.-      ...+.+..+||+||.+
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KRliG~~   76 (668)
T PRK13410          3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVL------NPQNTFYNLKRFIGRR   76 (668)
T ss_pred             cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHh------CccceehHHhhhhCCC
Confidence            37999999999999999999999999999999999999997 5789999999976521      1234566777777764

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.63  E-value=5.1e-16  Score=122.84  Aligned_cols=73  Identities=40%  Similarity=0.481  Sum_probs=60.6

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++++|++.+++|..|++.+||+|+|. +++++||++|+.++.-      ...+.+.++||+||.+
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~   76 (653)
T PRK13411          3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVT------NAENTVYSIKRFIGRR   76 (653)
T ss_pred             cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhh------CcccchHHHHHHhCCC
Confidence            37999999999999999999999999999999999999997 4589999999976521      2234556778888764

>CHL00094 dnaK heat shock protein 70

Probab=99.63  E-value=6.4e-16  Score=121.55  Aligned_cols=73  Identities=37%  Similarity=0.410  Sum_probs=60.3

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++++|++++++|..|.+.+||+|+|. +++++||++|++++.-      ...+.+.++||+||.+
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~   76 (621)
T CHL00094          3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVI------NPENTFYSVKRFIGRK   76 (621)
T ss_pred             ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHh------CccceehhhHHhcCCC
Confidence            58999999999999999999999999999999999999997 4689999999976521      1234556677777764

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.63  E-value=4.2e-16  Score=123.63  Aligned_cols=73  Identities=38%  Similarity=0.519  Sum_probs=60.9

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++||||||||||||+++++++++++|..|.+.+||+|+|.+++++||.+|++++..      ...+.+.++||+||.+
T Consensus        28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~------~p~~ti~~~KRliG~~  100 (657)
T PTZ00186         28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAIT------NPQSTFYAVKRLIGRR  100 (657)
T ss_pred             eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhh------CchhHHHHHHHHhccc
Confidence            479999999999999999999999999999999999999998889999999976421      1224556677777764

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.62  E-value=4.3e-16  Score=122.25  Aligned_cols=72  Identities=29%  Similarity=0.290  Sum_probs=59.7

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      +||||||||||+||++++|++++++|..|.+.+||+|+|. +++++||.+|+.+...      ...+.+.++||+||.+
T Consensus         1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~Kr~iG~~   73 (599)
T TIGR01991         1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAE------DPKNTISSVKRLMGRS   73 (599)
T ss_pred             CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhh------ChhhhHHHHHHHhCCC
Confidence            5899999999999999999999999999999999999997 4589999999976421      1234556677888764

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.62  E-value=6.9e-16  Score=122.54  Aligned_cols=73  Identities=37%  Similarity=0.445  Sum_probs=59.8

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++++|++++++|+.|++.+||+|+|. +++++||.+|++++..      ...+.+.++||+||.+
T Consensus        40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~  113 (673)
T PLN03184         40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVV------NPENTFFSVKRFIGRK  113 (673)
T ss_pred             CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhh------CchhhhHHHHHhhCCC
Confidence            47999999999999999999999999999999999999997 5689999999976521      1223455667777764

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.62  E-value=7.9e-16  Score=120.18  Aligned_cols=73  Identities=42%  Similarity=0.497  Sum_probs=60.3

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++++|++++++|..|++.+||+|+|. ++++++|.+|+.++..      ...+.+..+||+||.+
T Consensus         1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~------~p~~~i~~~Kr~iG~~   74 (595)
T TIGR02350         1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVT------NPENTIYSIKRFMGRR   74 (595)
T ss_pred             CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhh------CchhhhHHHHHHhCCC
Confidence            47999999999999999999999999999999999999998 4589999999976421      2234556677777764

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.58  E-value=3.4e-15  Score=117.31  Aligned_cols=51  Identities=35%  Similarity=0.504  Sum_probs=48.0

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccch
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRK   52 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A   52 (91)
                      .+|||||||||||||++.++++++++|..|++.+||+|+|.+++++||.+|
T Consensus        20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A   70 (595)
T PRK01433         20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK   70 (595)
T ss_pred             eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh
Confidence            379999999999999999999999999999999999999987779999988

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.55  E-value=1.2e-14  Score=112.54  Aligned_cols=54  Identities=57%  Similarity=0.791  Sum_probs=46.9

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA   56 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~   56 (91)
                      ++|||||||||+||++.+++++++.+..|++.+||+|+|.+++++||..|....
T Consensus         1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~   54 (602)
T PF00012_consen    1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQM   54 (602)
T ss_dssp             EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTT
T ss_pred             CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhc
Confidence            689999999999999999999999999999999999999988999999998654

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.1e-14  Score=114.17  Aligned_cols=72  Identities=39%  Similarity=0.414  Sum_probs=58.9

Q ss_pred             CeEEEecccceEEEEEEeCC-eEEEEecCCCCeeeeEEEEEcC-CeeeeccchhhccccceecccCCCCccccccccCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQG-KVEIIANDQGNRTTPSYVAFTD-TERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPD   79 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~-~~~il~~~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~   79 (91)
                      .+|||||||||||||+++++ .+.++.|..+.+++||+|+|.. +++++|+.|++++.-      ......-++||.||.
T Consensus         6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~------~p~~t~~~~kr~~G~   79 (579)
T COG0443           6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVD------NPENTIFSIKRKIGR   79 (579)
T ss_pred             eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhh------CCcceEEEEehhcCC
Confidence            47999999999999999988 7999999999999999999984 479999999986521      122344567777774

>KOG0102|consensus

Probab=99.34  E-value=1.2e-12  Score=101.74  Aligned_cols=55  Identities=60%  Similarity=0.823  Sum_probs=52.2

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhcc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFA   56 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~   56 (91)
                      .++||||||||||+|++.++++.++.|.+|.+++||+|+|+ +++++||..|++++
T Consensus        28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqa   83 (640)
T KOG0102|consen   28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQA   83 (640)
T ss_pred             ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhh
Confidence            37999999999999999999999999999999999999997 77999999999988

>KOG0101|consensus

Probab=99.32  E-value=1.6e-12  Score=102.47  Aligned_cols=56  Identities=77%  Similarity=1.006  Sum_probs=52.4

Q ss_pred             CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA   56 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~   56 (91)
                      |..||||||||+|||+++.+++.+++.|+.|++++||+|+|.+.++++|.+|..+.
T Consensus         7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv   62 (620)
T KOG0101|consen    7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQV   62 (620)
T ss_pred             cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhh
Confidence            57899999999999999999999999999999999999999988999998888766

>KOG0103|consensus

Probab=99.03  E-value=2.3e-10  Score=90.84  Aligned_cols=56  Identities=39%  Similarity=0.633  Sum_probs=53.4

Q ss_pred             CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA   56 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~   56 (91)
                      |.++|||||..||.||+.+.+.++++.|+.+++.+|++|+|..+++++|.+|..+.
T Consensus         1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~   56 (727)
T KOG0103|consen    1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQ   56 (727)
T ss_pred             CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccce
Confidence            88999999999999999999999999999999999999999999999999998766

>KOG0104|consensus

Probab=98.63  E-value=2.6e-08  Score=80.25  Aligned_cols=71  Identities=35%  Similarity=0.488  Sum_probs=60.5

Q ss_pred             CeEEEecccceEEEEEEeCCeE-EEEecCCCCeeeeEEEEEcCCeeeeccchhhcc-ccc----eecccCCCCcccc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKV-EIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA-YFT----TYQVDLTGEPDQV   72 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~-~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~-~~~----~~~~~~~gr~~~s   72 (91)
                      .+++||||+-|..|+++.+|-| +|+.|...+|.+|++|+|.+++|++|.+|...+ .|+    .++.+++|++...
T Consensus        23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~   99 (902)
T KOG0104|consen   23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD   99 (902)
T ss_pred             hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence            4689999999999999998865 899999999999999999999999999999887 343    2456788876654

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=98.30  E-value=9.5e-07  Score=65.14  Aligned_cols=46  Identities=39%  Similarity=0.439  Sum_probs=34.5

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC-e--eeeccchhhcc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-E--RLIGLRKFWFA   56 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~-~--~~vG~~A~~~~   56 (91)
                      ..+||||||+|++|.  .+++. ++.++      ||+|++++. .  ..||.+|+.+.
T Consensus         5 ~~~giDlGt~~~~i~--~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~   53 (335)
T PRK13929          5 TEIGIDLGTANILVY--SKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMI   53 (335)
T ss_pred             CeEEEEcccccEEEE--ECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhh
Confidence            358999999999864  45554 34454      999999732 2  68999999765

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=98.29  E-value=9.5e-07  Score=64.76  Aligned_cols=44  Identities=34%  Similarity=0.436  Sum_probs=33.3

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC-----e--eeeccchhhc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-----E--RLIGLRKFWF   55 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~-----~--~~vG~~A~~~   55 (91)
                      .+||||||+||+|+...++  .++.       .||+|++.++     .  .+||.+|+..
T Consensus         4 ~~giDlGt~~s~i~~~~~~--~~~~-------~psvv~~~~~~~~~~~~~~~vG~~A~~~   54 (333)
T TIGR00904         4 DIGIDLGTANTLVYVKGRG--IVLN-------EPSVVAIRTDRDAKTKSILAVGHEAKEM   54 (333)
T ss_pred             eeEEecCcceEEEEECCCC--EEEe-------cCCEEEEecCCCCCCCeEEEEhHHHHHh
Confidence            3899999999999875333  2332       5999999722     2  7899999876

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=98.11  E-value=3.4e-06  Score=61.98  Aligned_cols=45  Identities=38%  Similarity=0.442  Sum_probs=34.5

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC-C-e-eeeccchhhcc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD-T-E-RLIGLRKFWFA   56 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~-~-~-~~vG~~A~~~~   56 (91)
                      -+||||||+|++|+..  ++..++.       .||+|++.. + . ..+|++|++..
T Consensus         5 ~~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~   52 (336)
T PRK13928          5 DIGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMV   52 (336)
T ss_pred             eeEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhh
Confidence            3899999999999875  4444554       399999984 2 3 48999998764

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=98.11  E-value=4.8e-06  Score=61.99  Aligned_cols=43  Identities=40%  Similarity=0.495  Sum_probs=34.7

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC--C---eeeeccchhh
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD--T---ERLIGLRKFW   54 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~--~---~~~vG~~A~~   54 (91)
                      -+||||||.|+.|+.-..+   ++.++      ||+|++..  +   -..||.+|++
T Consensus         8 diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~   55 (342)
T COG1077           8 DIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQ   55 (342)
T ss_pred             cceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHH
Confidence            5899999999999975333   66677      99999974  3   2789999996

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=98.04  E-value=3.8e-06  Score=62.42  Aligned_cols=44  Identities=36%  Similarity=0.504  Sum_probs=31.2

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC---eeeeccchhhc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT---ERLIGLRKFWF   55 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~---~~~vG~~A~~~   55 (91)
                      -+||||||+|+.|+.-..|   ++.++      ||+|+++..   -..+|++|+..
T Consensus         3 ~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m   49 (326)
T PF06723_consen    3 DIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAM   49 (326)
T ss_dssp             EEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTT
T ss_pred             ceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHH
Confidence            5899999999998753223   44445      999999843   36799999864

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=97.90  E-value=1.9e-05  Score=57.61  Aligned_cols=45  Identities=36%  Similarity=0.412  Sum_probs=33.9

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC--C-eeeeccchhhcc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD--T-ERLIGLRKFWFA   56 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~--~-~~~vG~~A~~~~   56 (91)
                      .+||||||+|++++...++  .++ +      +||+|++.+  + ..+||++|++..
T Consensus        10 ~vgiDlGt~~t~i~~~~~~--~~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~   57 (335)
T PRK13930         10 DIGIDLGTANTLVYVKGKG--IVL-N------EPSVVAIDTKTGKVLAVGEEAKEML   57 (335)
T ss_pred             ceEEEcCCCcEEEEECCCC--EEE-e------cCCEEEEECCCCeEEEEcHHHHHhh
Confidence            4899999999999886332  233 2      499999973  2 479999998654

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=97.78  E-value=4.7e-05  Score=55.64  Aligned_cols=45  Identities=33%  Similarity=0.393  Sum_probs=32.9

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC--C-eeeeccchhhcc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD--T-ERLIGLRKFWFA   56 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~--~-~~~vG~~A~~~~   56 (91)
                      .+||||||+|++++..  ++..++       .+||+|++..  + ..++|++|+++.
T Consensus         7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~   54 (334)
T PRK13927          7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQML   54 (334)
T ss_pred             eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHh
Confidence            5899999999998643  332233       2699999973  2 358999998764

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=93.84  E-value=0.082  Score=31.71  Aligned_cols=19  Identities=32%  Similarity=0.375  Sum_probs=17.3

Q ss_pred             CCeEEEecccceEEEEEEe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~   19 (91)
                      |.++|||+|.|+..+|+.+
T Consensus         1 ~~ilgiD~Ggt~i~~a~~d   19 (99)
T smart00732        1 KRVLGLDPGRKGIGVAVVD   19 (99)
T ss_pred             CcEEEEccCCCeEEEEEEC
Confidence            6789999999999999885

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=93.77  E-value=0.081  Score=36.92  Aligned_cols=18  Identities=39%  Similarity=0.671  Sum_probs=16.3

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||+..+++++.
T Consensus         2 ~lgiDiGTts~K~~l~d~   19 (245)
T PF00370_consen    2 YLGIDIGTTSVKAVLFDE   19 (245)
T ss_dssp             EEEEEECSSEEEEEEEET
T ss_pred             EEEEEEcccceEEEEEeC
Confidence            689999999999999873

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>PRK10331 L-fuculokinase; Provisional

Probab=92.44  E-value=0.14  Score=39.32  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=17.0

Q ss_pred             eEEEecccceEEEEEEe-CCe
Q psy3438           3 AIGIDLGTTYSCVAVFQ-QGK   22 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~-~~~   22 (91)
                      ++|||+|||++.+++++ +|+
T Consensus         4 ~lgID~GTt~~Ka~l~d~~G~   24 (470)
T PRK10331          4 ILVLDCGATNVRAIAVDRQGK   24 (470)
T ss_pred             EEEEecCCCceEEEEEcCCCc
Confidence            68999999999999986 443

>smart00268 ACTIN Actin

Probab=92.27  E-value=0.22  Score=36.85  Aligned_cols=45  Identities=24%  Similarity=0.223  Sum_probs=31.2

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CC--------eeeeccchhh
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DT--------ERLIGLRKFW   54 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~--------~~~vG~~A~~   54 (91)
                      ..+.||+||.++.+....+..|.        ..+||+|+.. ++        ..++|.+|..
T Consensus         2 ~~iviD~Gs~~~k~G~~~~~~P~--------~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~   55 (373)
T smart00268        2 PAIVIDNGSGTIKAGFAGEDEPQ--------VVFPSIVGRPKDGKGMVGDAKDTFVGDEAQE   55 (373)
T ss_pred             CeEEEECCCCcEEEeeCCCCCCc--------EEccceeeEecccccccCCCcceEecchhhh
Confidence            47899999999998865443333        2348888775 21        3588998854

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=91.95  E-value=0.23  Score=36.79  Aligned_cols=46  Identities=20%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc----------CCeeeeccchhhcc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT----------DTERLIGLRKFWFA   56 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~----------~~~~~vG~~A~~~~   56 (91)
                      .+.||+||.++.++...+..+.        ..+||+|+..          ....++|++|....
T Consensus         1 ~iViD~Gs~~~r~G~a~~~~p~--------~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~   56 (371)
T cd00012           1 AVVIDNGSGTIKAGFAGEDAPR--------VVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKR   56 (371)
T ss_pred             CEEEECCCCeEEEEeCCCCCCc--------eEeeccceeecCcccccccCCCceEEchhhhhCC
Confidence            3789999999998875443232        2346776654          13578999887643

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=91.69  E-value=0.23  Score=38.64  Aligned_cols=20  Identities=35%  Similarity=0.592  Sum_probs=17.3

Q ss_pred             CeEEEecccceEEEEEEeCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQG   21 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~   21 (91)
                      .++|||+|||+..+.+++..
T Consensus         5 ~~lgIDiGTt~~Kavl~d~~   24 (502)
T COG1070           5 YVLGIDIGTTSVKAVLFDED   24 (502)
T ss_pred             EEEEEEcCCCcEEEEEEeCC
Confidence            57899999999999988643

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=91.66  E-value=0.2  Score=39.32  Aligned_cols=18  Identities=28%  Similarity=0.510  Sum_probs=16.4

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      +++|||+|||++.+++++
T Consensus         1 ~~lgID~GTts~Ka~l~d   18 (541)
T TIGR01315         1 HYIGVDVGTGSARACIID   18 (541)
T ss_pred             CEEEEEecCcCEEEEEEc
Confidence            479999999999999986

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=91.56  E-value=0.22  Score=35.22  Aligned_cols=20  Identities=35%  Similarity=0.700  Sum_probs=17.3

Q ss_pred             eEEEecccceEEEEEEeCCe
Q psy3438           3 AIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~   22 (91)
                      .+|||.|||++.++++++++
T Consensus         2 ~lGIDiGtts~K~vl~d~g~   21 (248)
T TIGR00241         2 SLGIDSGSTTTKMVLMEDGK   21 (248)
T ss_pred             EEEEEcChhheEEEEEcCCE
Confidence            68999999999999987543

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=91.25  E-value=0.25  Score=36.52  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             CCeEEEecccceEEEEEEeCCe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~   22 (91)
                      |..+|||.|+|.+.++++++++
T Consensus        32 m~~~GIDiGStt~K~Vlld~~~   53 (293)
T TIGR03192        32 IITCGIDVGSVSSQAVLVCDGE   53 (293)
T ss_pred             cEEEEEEeCchhEEEEEEeCCE
Confidence            6789999999999999988653

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination

Probab=91.18  E-value=0.28  Score=32.07  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             CCeEEEecccceEEEEEEeCC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQG   21 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~   21 (91)
                      |.++|||+|+..+-||+.+..
T Consensus         1 mriL~lD~G~kriGiAvsd~~   21 (135)
T PF03652_consen    1 MRILGLDYGTKRIGIAVSDPL   21 (135)
T ss_dssp             -EEEEEEECSSEEEEEEEETT
T ss_pred             CeEEEEEeCCCeEEEEEecCC
Confidence            789999999999999998754

The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.

>PRK04123 ribulokinase; Provisional

Probab=91.04  E-value=0.29  Score=38.35  Aligned_cols=17  Identities=29%  Similarity=0.509  Sum_probs=15.9

Q ss_pred             eEEEecccceEEEEEEe
Q psy3438           3 AIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~   19 (91)
                      ++|||+|||++.+++++
T Consensus         5 ~lgiD~GTts~Ka~l~d   21 (548)
T PRK04123          5 VIGLDFGTDSVRALLVD   21 (548)
T ss_pred             EEEEecCCCceEEEEEE
Confidence            68999999999999987

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=90.91  E-value=0.28  Score=38.04  Aligned_cols=18  Identities=33%  Similarity=0.431  Sum_probs=16.1

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||++.+++++.
T Consensus         4 ~lgiDiGTts~Ka~l~d~   21 (504)
T PTZ00294          4 IGSIDQGTTSTRFIIFDE   21 (504)
T ss_pred             EEEEecCCCceEEEEECC
Confidence            689999999999999863

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=90.91  E-value=0.28  Score=38.39  Aligned_cols=18  Identities=33%  Similarity=0.442  Sum_probs=16.6

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .++|||+|||++.+++++
T Consensus         2 ~~lgiD~GTss~Ka~l~d   19 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVD   19 (536)
T ss_pred             eEEEEecCCCceEEEEEE
Confidence            478999999999999998

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=90.78  E-value=0.28  Score=37.71  Aligned_cols=18  Identities=17%  Similarity=0.211  Sum_probs=16.2

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||++.+++++.
T Consensus         3 ilgiD~GTss~K~~l~d~   20 (465)
T TIGR02628         3 ILVLDCGATNLRAIAINR   20 (465)
T ss_pred             EEEEecCCCcEEEEEEcC
Confidence            689999999999999863

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PRK15027 xylulokinase; Provisional

Probab=90.77  E-value=0.25  Score=38.06  Aligned_cols=18  Identities=44%  Similarity=0.606  Sum_probs=16.3

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||++.+++++.
T Consensus         2 ~lgID~GTts~Ka~l~d~   19 (484)
T PRK15027          2 YIGIDLGTSGVKVILLNE   19 (484)
T ss_pred             EEEEEecccceEEEEEcC
Confidence            689999999999999864

>PRK00039 ruvC Holliday junction resolvase; Reviewed

Probab=90.49  E-value=0.25  Score=33.39  Aligned_cols=19  Identities=32%  Similarity=0.469  Sum_probs=17.3

Q ss_pred             CCeEEEecccceEEEEEEe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~   19 (91)
                      |.++|||.|++++-+++.+
T Consensus         2 m~iLGIDPgl~~tG~avi~   20 (164)
T PRK00039          2 MRILGIDPGLRRTGYGVIE   20 (164)
T ss_pred             CEEEEEccccCceeEEEEE
Confidence            7789999999999999875

>PLN00130 succinate dehydrogenase (SDH3); Provisional

Probab=90.02  E-value=0.028  Score=39.16  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=15.7

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      +||+|+||+|++++..++
T Consensus        59 ~~g~~~gt~n~~~~~~e~   76 (213)
T PLN00130         59 ILGTGLGTNNAIREEREK   76 (213)
T ss_pred             eeccCCCcchHHHHHHhc
Confidence            689999999999987654

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=89.88  E-value=0.29  Score=38.12  Aligned_cols=18  Identities=22%  Similarity=0.368  Sum_probs=16.1

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||++.+++++.
T Consensus         5 ~lgID~GTts~Ka~l~d~   22 (520)
T PRK10939          5 LMALDAGTGSIRAVIFDL   22 (520)
T ss_pred             EEEEecCCCceEEEEECC
Confidence            689999999999999863

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=89.38  E-value=0.39  Score=37.21  Aligned_cols=18  Identities=39%  Similarity=0.765  Sum_probs=16.1

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||++.+++++.
T Consensus         2 ~lgiDiGtt~~K~~l~d~   19 (505)
T TIGR01314         2 MIGVDIGTTSTKAVLFEE   19 (505)
T ss_pred             EEEEeccccceEEEEEcC
Confidence            689999999999999853

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination

Probab=89.28  E-value=0.9  Score=30.10  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=19.0

Q ss_pred             CeEEEecccceEEEEEEe--CCeEEEE
Q psy3438           2 PAIGIDLGTTYSCVAVFQ--QGKVEII   26 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~--~~~~~il   26 (91)
                      .++|||.|++|+-+|+.+  ++++.++
T Consensus         1 rILGIDPGl~~~G~av~~~~~~~~~~~   27 (154)
T cd00529           1 RILGIDPGSRNTGYGVIEQEGRKLIYL   27 (154)
T ss_pred             CEEEEccCcCceEEEEEEeeCCeEEEE
Confidence            379999999999999864  4454443

HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=89.22  E-value=1  Score=28.48  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=16.9

Q ss_pred             eEEEecccceEEEEEEeCCeE
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKV   23 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~   23 (91)
                      +++||+|++.+++++++.+..
T Consensus         1 i~~iDiGs~~~~~~i~~~~~~   21 (120)
T PF14450_consen    1 IVVIDIGSSKTKVAIAEDGSD   21 (120)
T ss_dssp             EEEEEE-SSSEEEEEEETTEE
T ss_pred             CEEEEcCCCcEEEEEEEeCCC
Confidence            579999999999999887543

>PRK00047 glpK glycerol kinase; Provisional

Probab=89.07  E-value=0.44  Score=36.88  Aligned_cols=17  Identities=35%  Similarity=0.557  Sum_probs=15.7

Q ss_pred             eEEEecccceEEEEEEe
Q psy3438           3 AIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~   19 (91)
                      ++|||+|||++.+++++
T Consensus         7 ~lgiD~GTts~Ka~l~d   23 (498)
T PRK00047          7 ILALDQGTTSSRAIIFD   23 (498)
T ss_pred             EEEEecCCCceEEEEEC
Confidence            68999999999999986

>TIGR01311 glycerol_kin glycerol kinase

Probab=88.81  E-value=0.48  Score=36.62  Aligned_cols=18  Identities=44%  Similarity=0.497  Sum_probs=16.2

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .++|||+|||+..+++++
T Consensus         2 ~~lgiDiGtt~iKa~l~d   19 (493)
T TIGR01311         2 YILAIDQGTTSSRAIVFD   19 (493)
T ss_pred             eEEEEecCCCceEEEEEC
Confidence            378999999999999986

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>PLN02295 glycerol kinase

Probab=88.73  E-value=0.48  Score=36.86  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=15.8

Q ss_pred             eEEEecccceEEEEEEe
Q psy3438           3 AIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~   19 (91)
                      ++|||+|||++.+++++
T Consensus         2 vlgID~GTts~Ka~l~d   18 (512)
T PLN02295          2 VGAIDQGTTSTRFIIYD   18 (512)
T ss_pred             EEEEecCCCceEEEEEC
Confidence            68999999999999986

>PTZ00280 Actin-related protein 3; Provisional

Probab=88.18  E-value=0.96  Score=34.26  Aligned_cols=46  Identities=24%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-------------CCeeeeccchhhc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-------------DTERLIGLRKFWF   55 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-------------~~~~~vG~~A~~~   55 (91)
                      ..|.||+|+.++.++...+..|.+        .+||+|...             +.+.++|++|...
T Consensus         5 ~~iViD~GS~~~k~G~ag~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~   63 (414)
T PTZ00280          5 PVVVIDNGTGYTKMGYAGNTEPTY--------IIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA   63 (414)
T ss_pred             CeEEEECCCCceEeeeCCCCCCCE--------EecceeEEeccccccccccccccCCEEEcchhhhC
Confidence            468999999999998754333432        346666543             1146789988654

>PRK13321 pantothenate kinase; Reviewed

Probab=85.65  E-value=1.3  Score=31.54  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=17.7

Q ss_pred             eEEEecccceEEEEEEeCCe
Q psy3438           3 AIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~   22 (91)
                      +++||+|.|+..++++++++
T Consensus         2 iL~IDIGnT~ik~gl~~~~~   21 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGDR   21 (256)
T ss_pred             EEEEEECCCeEEEEEEECCE
Confidence            68999999999999998653

>PRK13318 pantothenate kinase; Reviewed

Probab=85.43  E-value=1.3  Score=31.49  Aligned_cols=20  Identities=30%  Similarity=0.672  Sum_probs=17.8

Q ss_pred             eEEEecccceEEEEEEeCCe
Q psy3438           3 AIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~   22 (91)
                      +++||+|.|+..++++++++
T Consensus         2 iL~IDIGnT~iK~al~d~g~   21 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYEGGK   21 (258)
T ss_pred             EEEEEECCCcEEEEEEECCE
Confidence            68999999999999998654

>PRK00109 Holliday junction resolvase-like protein; Reviewed

Probab=85.12  E-value=1.2  Score=29.21  Aligned_cols=20  Identities=35%  Similarity=0.405  Sum_probs=17.8

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |.++|||+|+-.+-+|+.+.
T Consensus         4 ~~iLalD~G~kriGvAv~d~   23 (138)
T PRK00109          4 GRILGLDVGTKRIGVAVSDP   23 (138)
T ss_pred             CcEEEEEeCCCEEEEEEecC
Confidence            67899999999999998764

>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []

Probab=84.37  E-value=2.8  Score=27.69  Aligned_cols=24  Identities=38%  Similarity=0.627  Sum_probs=16.7

Q ss_pred             eEEEecccceEEEEEEe--CCeEEEE
Q psy3438           3 AIGIDLGTTYSCVAVFQ--QGKVEII   26 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~--~~~~~il   26 (91)
                      ++|||-|++++-.|+.+  +++...+
T Consensus         1 ILGIDPgl~~tG~avi~~~~~~~~~i   26 (149)
T PF02075_consen    1 ILGIDPGLSNTGYAVIEEDGGKLRLI   26 (149)
T ss_dssp             EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred             CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence            68999999999999874  4454444

RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=82.16  E-value=2.1  Score=32.96  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.5

Q ss_pred             CCeEEEecccceEEEEEEeCCe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~   22 (91)
                      |..+|||-|+|.+.+.+++++.
T Consensus       135 ~~~LGID~GSTtTK~VLm~d~~  156 (396)
T COG1924         135 MYTLGIDSGSTTTKAVLMEDGK  156 (396)
T ss_pred             cEEEEEecCCcceeEEEEeCCC
Confidence            5689999999999999988775

>PRK00292 glk glucokinase; Provisional

Probab=81.30  E-value=2  Score=31.24  Aligned_cols=19  Identities=32%  Similarity=0.326  Sum_probs=17.1

Q ss_pred             CC-eEEEecccceEEEEEEe
Q psy3438           1 MP-AIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~-~iGIDfGTtns~va~~~   19 (91)
                      |+ ++|||+|.|+..+++++
T Consensus         1 ~~~~lgiDIGgT~i~~~l~~   20 (316)
T PRK00292          1 MKPALVGDIGGTNARFALCD   20 (316)
T ss_pred             CceEEEEEcCccceEEEEEe
Confidence            55 78999999999999986

>PLN02669 xylulokinase

Probab=81.19  E-value=1.7  Score=34.42  Aligned_cols=18  Identities=22%  Similarity=0.215  Sum_probs=16.1

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .+||||+||++..+.+++
T Consensus         9 ~~LGiD~GT~s~Ka~l~d   26 (556)
T PLN02669          9 LFLGFDSSTQSLKATVLD   26 (556)
T ss_pred             eEEEEecccCCeEEEEEc
Confidence            378999999999999886

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=81.01  E-value=1.9  Score=30.12  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=15.6

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .+++||||.||..|+.++
T Consensus        64 ~~LalDlGGTnlRv~~V~   81 (206)
T PF00349_consen   64 DFLALDLGGTNLRVALVE   81 (206)
T ss_dssp             EEEEEEESSSSEEEEEEE
T ss_pred             eEEEEeecCcEEEEEEEE
Confidence            368999999999999864

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=80.70  E-value=3.1  Score=30.34  Aligned_cols=18  Identities=33%  Similarity=0.503  Sum_probs=16.3

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      ..+|||.|+|.+.+.+++
T Consensus         2 ~~~GIDiGStttK~Vlid   19 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFE   19 (262)
T ss_pred             eEEEEEcCcccEEEEEEe
Confidence            368999999999999987

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B

Probab=80.13  E-value=2.3  Score=28.30  Aligned_cols=20  Identities=35%  Similarity=0.405  Sum_probs=17.7

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |.++|+|+||--+-||+-+.
T Consensus         2 ~~ilalD~G~KrIGvA~sd~   21 (141)
T COG0816           2 MRILALDVGTKRIGVAVSDI   21 (141)
T ss_pred             ceEEEEecCCceEEEEEecC
Confidence            67899999999999998754

subtilis) [DNA replication, recombination, and repair]

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		5e-23
4fsv_A	387	Crystal Structure Of A Heat Shock 70kda Protein 2 (		3e-22
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		3e-22
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		3e-22
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		3e-22
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		3e-22
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		3e-22
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		3e-22
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		3e-22
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		3e-22
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		3e-22
3cqx_A	386	Chaperone Complex Length = 386		3e-22
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		3e-22
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		3e-22
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		3e-22
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		4e-22
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		4e-22
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		4e-22
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		4e-22
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		4e-22
1hx1_A	400	Crystal Structure Of A Bag Domain In Complex With T		4e-22
3fzf_A	381	Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP		4e-22
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		4e-22
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		4e-22
2v7z_A	543	Crystal Structure Of The 70-Kda Heat Shock Cognate		4e-22
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		4e-22
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		8e-22
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-21
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		2e-21
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		2e-21
3jxu_A	409	Crystal Structure Of The Human 70kda Heat Shock Pro		2e-21
2e8a_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		3e-21
2e88_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		3e-21
3gdq_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		3e-21
3a8y_A	392	Crystal Structure Of The Complex Between The Bag5 B		3e-21
3d2f_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		3e-21
1hjo_A	380	Atpase Domain Of Human Heat Shock 70kda Protein 1 L		3e-21
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		3e-21
1s3x_A	382	The Crystal Structure Of The Human Hsp70 Atpase Dom		4e-21
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		7e-21
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		9e-21
3qfu_A	394	Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE		1e-17
3qfp_A	390	Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D		1e-17
3kvg_A	400	Crystal Structure Of The N-Terminal Domain Of Hsp70		3e-17
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		1e-16
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		2e-16
3gl1_A	387	Crystal Structure Of Atpase Domain Of Ssb1 Chaperon		1e-14
2v7y_A	509	Crystal Structure Of The Molecular Chaperone Dnak F		9e-13
2kho_A	605	Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP		9e-08
1dkg_D	383	Crystal Structure Of The Nucleotide Exchange Factor		1e-07
4b9q_A	605	Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L		2e-06
3c7n_A	668	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		3e-04
2qxl_A	658	Crystal Structure Analysis Of Sse1, A Yeast Hsp110		3e-04
3d2f_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		3e-04
3d2e_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70,		3e-04

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/49 (95%), Positives = 47/49 (95%)
Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 71

>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/48 (95%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 53

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 10 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 57

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 2  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 2  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 24 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 71

>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 2  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLG+TYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GI+LGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGINLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/48 (91%), Positives = 45/48 (93%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GI LGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGISLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/48 (91%), Positives = 45/48 (93%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLG TYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGGTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 28 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 74

>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 9  AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 55

>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 9  AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 55

>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 30 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 76

>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 10 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 56

>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 4  AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 50

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 45/47 (95%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSC+ VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6  AIGIDLGTTYSCIGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 46/47 (97%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          A+GIDLGTTYSCV VFQQG+VEI+ANDQGNRTTPSYVAFTDTERL+G
Sbjct: 26 AVGIDLGTTYSCVGVFQQGRVEILANDQGNRTTPSYVAFTDTERLVG 72

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/48 (91%), Positives = 45/48 (93%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYS V VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSKVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/46 (82%), Positives = 41/46 (89%)
Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          IGIDLGTTYSCVAV + GK EI+AN+QGNR TPSYVAFTD ERLIG
Sbjct: 17 IGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIG 62

>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PAIGIDLGTTYSCV V++   V+I+ NDQGNRTTPSYVAFT+TERLIG
Sbjct: 20 PAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIG 67

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%), Gaps = 1/47 (2%)
Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
          +GIDLGTTYSCV VF+ G+VEIIANDQGNR TPSYVAFT + ERLIG
Sbjct: 8  VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIG 54

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%), Gaps = 1/47 (2%)
Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
          +GIDLGTTYSCV VF+ G+VEIIANDQGNR TPSYVAFT + ERLIG
Sbjct: 29 VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIG 75

>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/47 (76%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          AIGIDLGTTYSCVA ++   VEIIAN+QGNR TPS+VAFT  ERLIG
Sbjct: 12 AIGIDLGTTYSCVATYESS-VEIIANEQGNRVTPSFVAFTPEERLIG 57

>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          IGIDLGTT SCVAV + G+V++I N +GNRTTPS VAF + ERL+G
Sbjct: 5  IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVG 50

>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
          IGIDLGTT SCVA+       ++ N +G+RTTPS +A+T D E L+G
Sbjct: 5  IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51

>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
          IGIDLGTT SCVA+       ++ N +G+RTTPS +A+T D E L+G
Sbjct: 5  IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51

>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
          IGIDLGTT SCVA+       ++ N +G+RTTPS +A+T D   L+G
Sbjct: 5  IGIDLGTTNSCVAIXDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVG 51

>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5  GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          G+DLG   S +AV +   ++I+ N+  NR+TPS V F    R +G
Sbjct: 8  GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 52

>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5  GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          G+DLG   S +AV +   ++I+ N+  NR+TPS V F    R +G
Sbjct: 5  GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 49

>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5  GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          G+DLG   S +AV +   ++I+ N+  NR+TPS V F    R +G
Sbjct: 6  GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 50

>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5  GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          G+DLG   S +AV +   ++I+ N+  NR+TPS V F    R +G
Sbjct: 6  GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	6e-39
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	5e-38
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	4e-37
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	2e-34
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	3e-20
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	8e-20
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	2e-19

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404

 Score =  132 bits (334), Expect = 6e-39
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 1  MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 71

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554

 Score =  129 bits (326), Expect = 4e-37
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
          PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5  PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675

 Score =  122 bits (309), Expect = 2e-34
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
             G+DLG   S +AV +   ++I+ N+  NR+TPS V F    R +G
Sbjct: 3  TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 50

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509

 Score = 82.3 bits (204), Expect = 3e-20
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
           IGIDLGTT SCVAV + G+V++I N +GNRTTPS VAF + ERL+G
Sbjct: 4  IIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVG 50

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383

 Score = 80.7 bits (200), Expect = 8e-20
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
          IGIDLGTT SCVA+       ++ N +G+RTTPS +A+T   E L+G
Sbjct: 5  IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
          IGIDLGTT SCVA+       ++ N +G+RTTPS +A+T   E L+G
Sbjct: 5  IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.67
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.65
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.63
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.62
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.6
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.58
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.56
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.56
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.55
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	98.5
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.3
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	96.99
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	96.48
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	96.37
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	96.28
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	95.35
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	94.56
1hjr_A	158	Holliday junction resolvase (RUVC); site-specific	93.44
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	93.34
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	92.83
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	91.85
1vhx_A	150	Putative holliday junction resolvase; structural g	91.69
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	91.5
4ep4_A	166	Crossover junction endodeoxyribonuclease RUVC; res	91.11
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	90.65
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	90.42
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	90.19
3djc_A	266	Type III pantothenate kinase; structural genomics,	90.1
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	89.97
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	89.93
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	89.92
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	89.8
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	89.72
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	89.34
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	89.25
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	89.03
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	88.91
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	88.88
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	88.72
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	88.62
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	88.4
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	87.78
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	87.77
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	87.71
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	86.5
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	85.42
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	85.01
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	84.91
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	83.99
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	83.5
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	83.32
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	83.19
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	82.72
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	82.68
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	82.57
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	82.44
1nu0_A	138	Hypothetical protein YQGF; structural genomics, st	81.78
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	81.72

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.67  E-value=4e-17  Score=128.19  Aligned_cols=73  Identities=25%  Similarity=0.259  Sum_probs=61.0

Q ss_pred             CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPD   79 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~   79 (91)
                      |.+||||||||||+||++.+++++++.|+.|++.+||+|+|.+++++||.+|++++..      ...+.+.++||+||.
T Consensus         2 m~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~------~p~~ti~~~KrllG~   74 (675)
T 3d2f_A            2 STPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTS------NIKNTVANLKRIIGL   74 (675)
T ss_dssp             CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTT------CGGGEECCHHHHTTC
T ss_pred             CcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhh------ChHhHHHHHHHHhCC
Confidence            6789999999999999999999999999999999999999998889999999876521      122345566777765

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.65  E-value=1.3e-16  Score=122.60  Aligned_cols=73  Identities=62%  Similarity=0.791  Sum_probs=60.4

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .+||||||||||+||++.+|++++++|+.|++.+||+|+|.+++++||++|++++..      ...+.+.++||+||..
T Consensus         5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrllG~~   77 (554)
T 1yuw_A            5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM------NPTNTVFDAKRLIGRR   77 (554)
T ss_dssp             CCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTT------CGGGEECCGGGTTTCC
T ss_pred             CEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhh------ChhhehHhhHHhcCCC
Confidence            489999999999999999999999999999999999999998889999999976421      1223445677777763

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.63  E-value=4.8e-16  Score=113.79  Aligned_cols=74  Identities=64%  Similarity=0.801  Sum_probs=62.0

Q ss_pred             CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      |.+||||||||||+||++.++.++++++..|++.+||+|+|.++++++|.+|+.+...      ...+.+..+|++||.+
T Consensus        23 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~------~~~~~~~~~Kr~lg~~   96 (404)
T 3i33_A           23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM------NPTNTIFDAKRLIGRK   96 (404)
T ss_dssp             CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTT------CSTTEECCGGGTTTCC
T ss_pred             CCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHh------ChhhhHHHHHHHhCCC
Confidence            6789999999999999999999999999999999999999998899999999875421      2234555677777764

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.62  E-value=4.2e-16  Score=120.82  Aligned_cols=73  Identities=34%  Similarity=0.421  Sum_probs=60.4

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .+||||||||||+||+++++++++++|..|.+.+||+|+|. ++++++|++|+.++..      ...+.+.++||+||.+
T Consensus         3 ~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrllG~~   76 (605)
T 4b9q_A            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVT------NPQNTLFAIKRLIGRR   76 (605)
T ss_dssp             CEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTT------CGGGEECCGGGTTTCB
T ss_pred             cEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHh------CCCcEehhhHHhhCCC
Confidence            48999999999999999999999999999999999999997 5689999999976521      1223455677777764

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.60  E-value=9.9e-16  Score=118.75  Aligned_cols=73  Identities=36%  Similarity=0.451  Sum_probs=59.5

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++.+|++++++|..|.+.+||+|+|. +++++||++|+++...      ...+.+.++||+||..
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~------~p~~t~~~~Kr~iG~~   76 (605)
T 2kho_A            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT------NPQNTLFAIKRLIGRR   76 (605)
T ss_dssp             -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTT------CGGGEEECGGGTTTCB
T ss_pred             CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhh------CCCCEeehhhHhhCCC
Confidence            47999999999999999999999999999999999999995 6789999999975421      1223455677888763

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.58  E-value=2.7e-15  Score=110.27  Aligned_cols=56  Identities=30%  Similarity=0.522  Sum_probs=52.1

Q ss_pred             CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA   56 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~   56 (91)
                      |.++|||||||||+||++.+++++++.+..|.+.+||+|+|.++++++|.+|+.+.
T Consensus        13 ~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~   68 (409)
T 4gni_A           13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFL   68 (409)
T ss_dssp             CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHH
T ss_pred             CcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECCCcEEEcHHHHHhh
Confidence            46899999999999999989999999999999999999999988999999998765

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.56  E-value=4.4e-15  Score=108.03  Aligned_cols=73  Identities=36%  Similarity=0.451  Sum_probs=59.0

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++++++++++.++.|.+.+||+|+|. ++++++|++|+++...      ...+.+.++|++||..
T Consensus         3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~------~~~~~~~~~k~~lg~~   76 (383)
T 1dkg_D            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT------NPQNTLFAIKRLIGRR   76 (383)
T ss_dssp             CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTT------CGGGEEECGGGTTTCB
T ss_pred             cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhh------CccceeehhHHhhCCC
Confidence            47899999999999999999999999999999999999996 5789999999865411      1223455677877753

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.56  E-value=6e-15  Score=112.03  Aligned_cols=72  Identities=44%  Similarity=0.577  Sum_probs=60.9

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      .++|||||||||+||++.++.+++++|+.|.+.+||+|+|.+++++||++|+.+..     . .. +.+.++|++||.+
T Consensus         3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~-----~-~p-~~~~~~Kr~lg~p   74 (509)
T 2v7y_A            3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAI-----T-NP-NTIISIKRHMGTD   74 (509)
T ss_dssp             CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTT-----T-CS-SEEECGGGTTTSC
T ss_pred             CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHH-----h-CC-CcHHHHHHhcCCC
Confidence            48999999999999999999999999999999999999998788999999996531     1 12 4566788888863

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=98.50  E-value=7.3e-08  Score=69.00  Aligned_cols=46  Identities=35%  Similarity=0.483  Sum_probs=34.8

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC--e-eeeccchhhcc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT--E-RLIGLRKFWFA   56 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~--~-~~vG~~A~~~~   56 (91)
                      ..+|||||||||++++..++  .++       .+||+|+|.++  + .+||++|+++.
T Consensus         4 ~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~   52 (344)
T 1jce_A            4 KDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMI   52 (344)
T ss_dssp             CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTT
T ss_pred             ceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhc
Confidence            57999999999999875332  232       27999999743  4 58999998754

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.30  E-value=0.00019  Score=49.85  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=19.6

Q ss_pred             CCeEEEecccceEEEEEEeCCe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~   22 (91)
                      |.++|||+|||+|.++++++++
T Consensus         1 M~~lGID~GsT~tk~av~d~~~   22 (276)
T 4ehu_A            1 MYTMGLDIGSTASKGVILKNGE   22 (276)
T ss_dssp             CEEEEEEECSSCEEEEEEETTT
T ss_pred             CeEEEEEcCccEEEEEEEECCC
Confidence            8899999999999999987654

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=96.99  E-value=0.00039  Score=50.95  Aligned_cols=46  Identities=24%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC------------------Ceeeeccchhhc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD------------------TERLIGLRKFWF   55 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~------------------~~~~vG~~A~~~   55 (91)
                      ..|+||+||+|+.++...+..|.        ..+||+|....                  ...+||++|...
T Consensus         6 ~~ivID~Gs~~~k~G~~~~~~p~--------~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~   69 (418)
T 1k8k_A            6 PACVVDCGTGYTKLGYAGNTEPQ--------FIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK   69 (418)
T ss_dssp             CCEEEEECSSEEEEEETTCSSCS--------EEEESCEEECC-----------CCCTTGGGCEEEGGGGTSC
T ss_pred             CeEEEECCCCeEEEeeCCCCCCC--------CcCCceEEEECcccccccccccccccccccCeEEChHHHhc
Confidence            56999999999999875433332        24577666542                  238899999864

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=96.48  E-value=0.0013  Score=47.50  Aligned_cols=17  Identities=29%  Similarity=0.401  Sum_probs=15.2

Q ss_pred             CCeEEEecccceEEEEE
Q psy3438           1 MPAIGIDLGTTYSCVAV   17 (91)
Q Consensus         1 m~~iGIDfGTtns~va~   17 (91)
                      |..+|||+||+|..++.
T Consensus        21 m~~igiDlG~~~tkv~~   37 (346)
T 2fsj_A           21 MVVVGLDVGYGDTKVIG   37 (346)
T ss_dssp             CEEEEEEECSSEEEEEC
T ss_pred             eEEEEEecCCcceeEEe
Confidence            67899999999999884

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=96.37  E-value=0.0005  Score=49.85  Aligned_cols=47  Identities=15%  Similarity=0.065  Sum_probs=31.2

Q ss_pred             CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc----------CCeeeeccchhhc
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT----------DTERLIGLRKFWF   55 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~----------~~~~~vG~~A~~~   55 (91)
                      +..|+||+||+|+.+++..++.|.        ..+||+|...          ++..+||++|...
T Consensus         5 ~~~ivID~Gs~~~k~G~~~~~~p~--------~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~   61 (375)
T 2fxu_A            5 TTALVCDNGSGLVKAGFAGDDAPR--------AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK   61 (375)
T ss_dssp             CCCEEEEECSSEEEEEETTCSSCS--------EEEECCEEEECTTTC-------CCEEHHHHHHH
T ss_pred             CceEEEECCCCeEEEEECCCCCCc--------eeeccccccccccccccCCCCCCeEechhHhhc
Confidence            357999999999999875443332        2345555543          2357899999764

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=96.28  E-value=0.0064  Score=43.01  Aligned_cols=24  Identities=21%  Similarity=0.147  Sum_probs=18.1

Q ss_pred             eEEEecccceEEEEEE-eCCeEEEE
Q psy3438           3 AIGIDLGTTYSCVAVF-QQGKVEII   26 (91)
Q Consensus         3 ~iGIDfGTtns~va~~-~~~~~~il   26 (91)
                      .+||||||+|+.+++. .+|....+
T Consensus         2 ~igiD~G~sntK~~~~~~~g~~~~~   26 (320)
T 2zgy_A            2 LVFIDDGSTNIKLQWQESDGTIKQH   26 (320)
T ss_dssp             EEEEEECSSEEEEEEECSSSCEEEE
T ss_pred             eEEEecCCccceEEEecCCCEEEEE
Confidence            7999999999999874 34554333

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=95.35  E-value=0.0041  Score=44.56  Aligned_cols=35  Identities=17%  Similarity=0.309  Sum_probs=24.4

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEE
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYV   39 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V   39 (91)
                      ++|||+||+++++++.+++++.+.  ..+...+||.+
T Consensus        15 ~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~   49 (377)
T 2ych_A           15 ALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGL   49 (377)
T ss_dssp             CEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTS
T ss_pred             eEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCc
Confidence            689999999999998876654442  23444556543

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=94.56  E-value=0.0062  Score=44.50  Aligned_cols=54  Identities=13%  Similarity=0.019  Sum_probs=0.0

Q ss_pred             CeEEEecccceEEEEEEeCCeEEE-EecCCCCeeeeEEE---EEcCCeeeeccchhhc
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEI-IANDQGNRTTPSYV---AFTDTERLIGLRKFWF   55 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~i-l~~~~g~~~~PS~V---~~~~~~~~vG~~A~~~   55 (91)
                      ..|+||+||.++.++...+..|.+ +++--+....++..   .+.....+||++|...
T Consensus         7 ~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~   64 (394)
T 1k8k_B            7 KVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASEL   64 (394)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhc
Confidence            578999999999998764444432 33222222222211   1112356799988754

>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6

Probab=93.44  E-value=0.14  Score=33.56  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             CCeEEEecccceEEEEEEe--CCeEEEE
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ--QGKVEII   26 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~--~~~~~il   26 (91)
                      |.++|||.|++++-+++.+  +++...+
T Consensus         1 m~ILGIDPGl~~tG~gvi~~~g~~~~~v   28 (158)
T 1hjr_A            1 AIILGIDPGSRVTGYGVIRQVGRQLSYL   28 (158)
T ss_dssp             CEEEEEECCSSEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEccCCCCeeEEEEEecCCeEEEE
Confidence            7899999999999999874  4444444

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=93.34  E-value=0.079  Score=36.85  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=18.6

Q ss_pred             CCeEEEecccceEEEEEEeC-Ce
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ-GK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~-~~   22 (91)
                      |.++|||+|+|++.+++++. ++
T Consensus         3 ~~~lGiD~Gst~~k~~l~d~~g~   25 (270)
T 1hux_A            3 IYTLGIDVGSTASKCIILKDGKE   25 (270)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTE
T ss_pred             cEEEEEEeccceEEEEEEeCCCC
Confidence            46899999999999999874 44

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=92.83  E-value=0.08  Score=40.42  Aligned_cols=44  Identities=14%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC----Ceeeeccchh
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD----TERLIGLRKF   53 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~----~~~~vG~~A~   53 (91)
                      ..|+||+||.++.+.+..++.|        ...+||+|....    +..+||.+|.
T Consensus        24 ~~iVID~GS~~~kaG~ag~~~P--------~~v~PSvVg~~~~~~~~~~~vG~e~~   71 (498)
T 3qb0_A           24 SAVVIDPGSYTTNIGYSGSDFP--------QSILPSVYGKYTADEGNKKIFSEQSI   71 (498)
T ss_dssp             SCEEEECCSSEEEEEETTCSSC--------SEEEESEEEEESSCSSCCEECCTTGG
T ss_pred             CeEEEECCCcEEEEEECCCCCe--------eeecCceeEEeccCCCccEEEecHHH
Confidence            4689999999999886433322        234699998852    2578998743

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8

Probab=91.85  E-value=0.16  Score=30.71  Aligned_cols=20  Identities=25%  Similarity=0.270  Sum_probs=18.1

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |.++|||+|+..+-||+.+.
T Consensus         1 mriLglD~G~kriGvAvsd~   20 (98)
T 1iv0_A            1 MRVGALDVGEARIGLAVGEE   20 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECS
T ss_pred             CcEEEEEeCCCEEEEEEEeC
Confidence            78999999999999999764

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=91.69  E-value=0.1  Score=33.71  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=17.9

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |.++|||+|+..+-+|+.+.
T Consensus         3 mriLGiDpG~~riGvAv~d~   22 (150)
T 1vhx_A            3 LRILGLDLGTKTLGVALSDE   22 (150)
T ss_dssp             EEEEEEEECSSEEEEEEECT
T ss_pred             CEEEEEEccCCEEEEEEEEC
Confidence            66899999999999999874

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=91.50  E-value=0.17  Score=38.28  Aligned_cols=18  Identities=33%  Similarity=0.477  Sum_probs=16.1

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||++.+.+++.
T Consensus         6 vlgID~GTss~Ka~l~d~   23 (526)
T 3ezw_A            6 IVALDQGTTSSRAVVMDH   23 (526)
T ss_dssp             EEEEEECSSEEEEEEECT
T ss_pred             EEEEEccccceeeeEEcC
Confidence            689999999999999863

>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A

Probab=91.11  E-value=0.18  Score=33.27  Aligned_cols=19  Identities=37%  Similarity=0.398  Sum_probs=17.4

Q ss_pred             CCeEEEecccceEEEEEEe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~   19 (91)
                      |.++|||.|++++-+++.+
T Consensus         1 MrILGIDPGl~~tG~gvi~   19 (166)
T 4ep4_A            1 MVVAGIDPGITHLGLGVVA   19 (166)
T ss_dssp             CEEEEEECCSSEEEEEEEE
T ss_pred             CEEEEEccccCceEEEEEE
Confidence            7899999999999999874

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=90.65  E-value=0.21  Score=37.88  Aligned_cols=18  Identities=28%  Similarity=0.248  Sum_probs=16.5

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .++|||+|||+..+++++
T Consensus         6 ~~lgIDiGtts~ka~l~d   23 (515)
T 3i8b_A            6 LVAGVDTSTQSCKVRVTD   23 (515)
T ss_dssp             EEEEEEECSSEEEEEEEE
T ss_pred             EEEEEEeccccEEEEEEE
Confidence            478999999999999987

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=90.42  E-value=0.2  Score=37.55  Aligned_cols=18  Identities=22%  Similarity=0.337  Sum_probs=16.3

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||+..+++++.
T Consensus         6 ~lgIDiGtT~~k~~l~d~   23 (503)
T 2w40_A            6 ILSIDQSTQSTKVFFYDE   23 (503)
T ss_dssp             EEEEEECSSEEEEEEEET
T ss_pred             EEEEEeCCcceEEEEECC
Confidence            689999999999999863

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=90.19  E-value=0.2  Score=37.48  Aligned_cols=19  Identities=32%  Similarity=0.359  Sum_probs=16.7

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         3 ~~lgiDiGtT~~k~~l~d~   21 (495)
T 2dpn_A            3 FLLALDQGTTSSRAILFTL   21 (495)
T ss_dssp             CEEEEEECSSEEEEEEECT
T ss_pred             EEEEEeeCCcceEEEEECC
Confidence            3789999999999999863

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=90.10  E-value=0.31  Score=34.21  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=19.0

Q ss_pred             CeEEEecccceEEEEEEeCCe
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~   22 (91)
                      +.++||.|.||..++++++++
T Consensus         3 MlL~IDIGNT~iK~gl~d~~~   23 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDGDE   23 (266)
T ss_dssp             CEEEEEECSSEEEEEEEETTE
T ss_pred             eEEEEEECCCeEEEEEEECCE
Confidence            589999999999999998774

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=89.97  E-value=0.29  Score=36.90  Aligned_cols=19  Identities=32%  Similarity=0.562  Sum_probs=16.6

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         8 ~~lgIDiGtts~k~~l~d~   26 (508)
T 3ifr_A            8 QVIGLDIGTTSTIAILVRL   26 (508)
T ss_dssp             EEEEEEECSSEEEEEEEET
T ss_pred             EEEEEEecCcceEEEEECC
Confidence            3689999999999999873

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=89.93  E-value=0.25  Score=37.17  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         5 ~~lgIDiGtts~K~~l~d~   23 (504)
T 3ll3_A            5 YIIGMDVGTTATKGVLYDI   23 (504)
T ss_dssp             EEEEEEECSSEEEEEEEET
T ss_pred             EEEEEEecCCceEEEEEcC
Confidence            3789999999999999863

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=89.92  E-value=0.24  Score=37.71  Aligned_cols=19  Identities=37%  Similarity=0.529  Sum_probs=16.7

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||++.+++++.
T Consensus         6 ~~lgIDiGtts~ka~l~d~   24 (554)
T 3l0q_A            6 YFIGVDVGTGSARAGVFDL   24 (554)
T ss_dssp             EEEEEEECSSEEEEEEEET
T ss_pred             EEEEEEECcccEEEEEECC
Confidence            4789999999999999863

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=89.80  E-value=0.18  Score=37.57  Aligned_cols=18  Identities=22%  Similarity=0.440  Sum_probs=16.0

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .++|||+|||+..+++++
T Consensus         5 ~~lgiDiGtts~k~~l~d   22 (489)
T 2uyt_A            5 NCVAVDLGASSGRVMLAR   22 (489)
T ss_dssp             EEEEEEECSSEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEE
Confidence            368999999999999875

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=89.34  E-value=0.29  Score=36.71  Aligned_cols=19  Identities=42%  Similarity=0.485  Sum_probs=16.7

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         7 ~~lgIDiGtts~k~~l~d~   25 (501)
T 3g25_A            7 YILSIDQGTTSSRAILFNQ   25 (501)
T ss_dssp             EEEEEEECSSEEEEEEECT
T ss_pred             EEEEEEeCccceEEEEEcC
Confidence            3789999999999999863

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=89.25  E-value=0.3  Score=37.06  Aligned_cols=19  Identities=21%  Similarity=0.239  Sum_probs=16.6

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||++.+.+++.
T Consensus        11 ~~lgID~GTts~Ka~l~d~   29 (538)
T 4bc3_A           11 CCLGWDFSTQQVKVVAVDA   29 (538)
T ss_dssp             EEEEEEECSSEEEEEEEET
T ss_pred             EEEEEEEcCcCEEEEEECC
Confidence            3689999999999999873

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=88.91  E-value=0.31  Score=36.61  Aligned_cols=19  Identities=37%  Similarity=0.503  Sum_probs=16.7

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         6 ~~lgIDiGtts~k~~l~d~   24 (506)
T 3h3n_X            6 YVMAIDQGTTSSRAIIFDR   24 (506)
T ss_dssp             EEEEEEECSSEEEEEEEET
T ss_pred             EEEEEEcCCCceEEEEECC
Confidence            3789999999999999863

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=88.88  E-value=0.26  Score=37.16  Aligned_cols=19  Identities=42%  Similarity=0.564  Sum_probs=16.3

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         7 ~~lgIDiGTts~Ka~l~d~   25 (482)
T 3h6e_A            7 ATIVIDLGKTLSKVSLWDL   25 (482)
T ss_dssp             -CEEEEECSSEEEEEEECT
T ss_pred             eEEEEEcCCCCeEEEEEEC
Confidence            4789999999999999863

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=88.72  E-value=0.3  Score=36.56  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=16.7

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         4 ~~lgiDiGtt~~k~~l~d~   22 (497)
T 2zf5_O            4 FVLSLDEGTTSARAIIFDR   22 (497)
T ss_dssp             EEEEEEECSSEEEEEEECT
T ss_pred             EEEEEecCCchhEEEEECC
Confidence            3789999999999999864

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=88.62  E-value=0.29  Score=36.89  Aligned_cols=18  Identities=28%  Similarity=0.200  Sum_probs=16.3

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .++|||+|||+..+++++
T Consensus         6 ~~lgIDiGtts~k~~l~d   23 (511)
T 3hz6_A            6 YIATFDIGTTEVKAALAD   23 (511)
T ss_dssp             EEEEEEECSSEEEEEEEC
T ss_pred             EEEEEEeCCCceEEEEEC
Confidence            478999999999999986

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=88.40  E-value=0.38  Score=33.61  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=18.7

Q ss_pred             CCeEEEecccceEEEEEEeCC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQG   21 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~   21 (91)
                      |.++|||+|.|+..+++++..
T Consensus         1 M~~lgiDiGgt~i~~~l~d~~   21 (302)
T 3vov_A            1 MKVVGLDLGGTKIAAGVFDGK   21 (302)
T ss_dssp             CCEEEEEECSSEEEEEEECSS
T ss_pred             CEEEEEEEcCCEEEEEEEeCC
Confidence            889999999999999998643

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=87.78  E-value=0.39  Score=33.13  Aligned_cols=19  Identities=26%  Similarity=0.494  Sum_probs=17.0

Q ss_pred             CCeEEEecccceEEEEEEe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~   19 (91)
                      |.++|||+|.|++.+++++
T Consensus         2 M~~lgiDiGgt~~~~~l~d   20 (299)
T 2e2o_A            2 MIIVGVDAGGTKTKAVAYD   20 (299)
T ss_dssp             CCEEEEEECSSCEEEEEEC
T ss_pred             eEEEEEEeCCCcEEEEEEc
Confidence            4689999999999999986

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=87.77  E-value=0.38  Score=36.40  Aligned_cols=18  Identities=39%  Similarity=0.484  Sum_probs=16.3

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .++|||+|||+..+++++
T Consensus        27 ~~lgIDiGtts~k~~l~d   44 (520)
T 4e1j_A           27 YILAIDQGTTSTRAIVFD   44 (520)
T ss_dssp             EEEEEEECSSEEEEEEEC
T ss_pred             eEEEEEeCCcceEEEEEC
Confidence            379999999999999986

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=87.71  E-value=0.41  Score=35.65  Aligned_cols=17  Identities=47%  Similarity=0.608  Sum_probs=15.8

Q ss_pred             eEEEecccceEEEEEEe
Q psy3438           3 AIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~   19 (91)
                      ++|||+|||+..+++++
T Consensus         2 ~lgiDiGtt~~k~~l~d   18 (484)
T 2itm_A            2 YIGIDLGTSGVKVILLN   18 (484)
T ss_dssp             EEEEEECSSEEEEEEEC
T ss_pred             EEEEEecCcccEEEEEC
Confidence            68999999999999986

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=86.50  E-value=0.49  Score=35.49  Aligned_cols=19  Identities=42%  Similarity=0.508  Sum_probs=16.6

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+|||+..+++++.
T Consensus         3 ~~lgiDiGtts~k~~l~d~   21 (504)
T 2d4w_A            3 YVLAIDQGTTSSRAIVFDH   21 (504)
T ss_dssp             EEEEEEECSSEEEEEEECT
T ss_pred             EEEEEecCCcceEEEEECC
Confidence            3689999999999999863

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=85.42  E-value=0.18  Score=35.88  Aligned_cols=53  Identities=19%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             CeEEEecccceEEEEEE-eCC-----eEEEEecCCCC--------eeeeEEEEEcCCeeeeccchhh
Q psy3438           2 PAIGIDLGTTYSCVAVF-QQG-----KVEIIANDQGN--------RTTPSYVAFTDTERLIGLRKFW   54 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~-~~~-----~~~il~~~~g~--------~~~PS~V~~~~~~~~vG~~A~~   54 (91)
                      .+||||+|..|..++.. .+|     +...++..-+.        ....-.|.|++...+||+.|..
T Consensus         8 ~iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~   74 (329)
T 4apw_A            8 YVMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVE   74 (329)
T ss_dssp             EEEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSS
T ss_pred             eEEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCccccc
Confidence            47899999999998753 121     11122221000        0012245666678999998864

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=85.01  E-value=0.77  Score=32.60  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=18.8

Q ss_pred             CCeEEEecccceEEEEEEeCCeE
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGKV   23 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~~   23 (91)
                      +..+|||.|.|.+.++++++++.
T Consensus        20 ~~~iGIDiGsTt~K~V~~~~~~i   42 (287)
T 2ews_A           20 HMKVGIDAGGTLIKIVQEQDNQR   42 (287)
T ss_dssp             -CEEEEEECSSEEEEEEECSSCE
T ss_pred             CeEEEEEEChhhEEEEEEcCCEE
Confidence            35799999999999999876654

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=84.91  E-value=0.71  Score=32.10  Aligned_cols=19  Identities=26%  Similarity=0.282  Sum_probs=17.6

Q ss_pred             CCeEEEecccceEEEEEEe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~   19 (91)
                      |.++|||+|.|+..+++++
T Consensus         4 m~~lgiDiGgt~i~~~l~d   22 (297)
T 4htl_A            4 MKIAAFDIGGTALKMGVVL   22 (297)
T ss_dssp             CCEEEEEECSSEEEEEEEC
T ss_pred             cEEEEEEeCCCeEEEEEEC
Confidence            7789999999999999986

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=83.99  E-value=1.1  Score=30.88  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=17.3

Q ss_pred             eEEEecccceEEEEEEeCCe
Q psy3438           3 AIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~   22 (91)
                      ++|||.|.|++.++++++++
T Consensus         2 ~lgiDiGGT~~~~~l~d~g~   21 (291)
T 1zbs_A            2 ILIGDSGSTKTDWCIAKEGK   21 (291)
T ss_dssp             EEEEEECSSEEEEEEEETTE
T ss_pred             EEEEEeCccceEEEEEeCCe
Confidence            68999999999999987443

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=83.50  E-value=0.8  Score=32.10  Aligned_cols=21  Identities=33%  Similarity=0.305  Sum_probs=17.7

Q ss_pred             CeEEEecccceEEEEEEe-CCe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ-QGK   22 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~-~~~   22 (91)
                      .++|||+|.|++.+++++ +|+
T Consensus         7 ~~lgiDiGgt~~~~~l~d~~g~   28 (347)
T 2ch5_A            7 IYGGVEGGGTRSEVLLVSEDGK   28 (347)
T ss_dssp             EEEEEEECTTCEEEEEEETTSC
T ss_pred             EEEEEEcCccceEEEEEeCCCC
Confidence            479999999999999986 443

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=83.32  E-value=0.82  Score=31.36  Aligned_cols=19  Identities=32%  Similarity=0.284  Sum_probs=17.4

Q ss_pred             CCeEEEecccceEEEEEEe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~   19 (91)
                      |.++|||+|.|+..+++++
T Consensus         4 m~~lgidiggt~i~~~l~d   22 (292)
T 2gup_A            4 MTIATIDIGGTGIKFASLT   22 (292)
T ss_dssp             CCEEEEEEETTEEEEEEEC
T ss_pred             cEEEEEEECCCEEEEEEEC
Confidence            6789999999999999986

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=83.19  E-value=0.83  Score=31.53  Aligned_cols=22  Identities=27%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             CCeEEEecccceEEEEEEeCCe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~   22 (91)
                      |+.+.||.|+||..++++++++
T Consensus         3 ~M~L~IDIGNT~ik~gl~~~~~   24 (249)
T 3bex_A            3 PMYLLVDVGNTHSVFSITEDGK   24 (249)
T ss_dssp             CEEEEEEECSSEEEEEEESSSS
T ss_pred             ceEEEEEECCCeEEEEEEECCE
Confidence            3578999999999999997654

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=82.72  E-value=1.3  Score=31.59  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             CCeEEEecccceEEEEEEeCCe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~   22 (91)
                      |.++|||-++..+.+|++++++
T Consensus         1 M~iLgIdts~~~~~val~~~g~   22 (330)
T 2ivn_A            1 MLALGIEGTAHTLGIGIVSEDK   22 (330)
T ss_dssp             CCEEEEECSSSEEEEEEECSSC
T ss_pred             CEEEEEEccCCCeEEEEEECCE
Confidence            8899999999999999998774

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=82.68  E-value=1.2  Score=29.95  Aligned_cols=19  Identities=37%  Similarity=0.524  Sum_probs=15.8

Q ss_pred             CeEEEecccceEEEEEEeC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~   20 (91)
                      .++|||+||+++.+.+.+.
T Consensus        29 ~~~gIDiGS~s~k~vi~~~   47 (272)
T 3h1q_A           29 YKVGVDLGTADIVLVVTDQ   47 (272)
T ss_dssp             CEEEEECCSSEEEEEEECT
T ss_pred             EEEEEEcccceEEEEEECC
Confidence            4789999999999888643

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=82.57  E-value=1.1  Score=31.16  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=17.6

Q ss_pred             CeEEEecccceEEEEEEe-CCe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ-QGK   22 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~-~~~   22 (91)
                      .++|||+|.|++.+++++ +++
T Consensus        12 ~~lGiDiGgT~i~~~l~d~~G~   33 (305)
T 1zc6_A           12 YLIGVDGGGTGTRIRLHASDGT   33 (305)
T ss_dssp             EEEEEEECSSCEEEEEEETTCC
T ss_pred             EEEEEEcCccceEEEEEcCCCC
Confidence            378999999999999986 443

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=82.44  E-value=1  Score=30.72  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             CCeEEEecccceEEEEEEe-CCe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ-QGK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~-~~~   22 (91)
                      |.++|||+|.|+..+++++ +|+
T Consensus         1 m~~lgidiggt~~~~~l~d~~g~   23 (289)
T 2aa4_A            1 MTTLAIDIGGTKLAAALIGADGQ   23 (289)
T ss_dssp             CCEEEEEECSSEEEEEEECTTCC
T ss_pred             CeEEEEEeCCCEEEEEEECCCCC
Confidence            7789999999999999986 443

>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A

Probab=81.78  E-value=1.6  Score=27.68  Aligned_cols=18  Identities=39%  Similarity=0.394  Sum_probs=16.6

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|+..+-||+.+.
T Consensus         5 iLglD~G~kriGvAvsd~   22 (138)
T 1nu0_A            5 LMAFDFGTKSIGVAVGQR   22 (138)
T ss_dssp             EEEEECCSSEEEEEEEET
T ss_pred             EEEEEeCCCEEEEEEEcC
Confidence            799999999999999875

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=81.72  E-value=1.3  Score=30.19  Aligned_cols=19  Identities=37%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             CCeEEEecccceEEEEEEe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~   19 (91)
                      |.++|||+|.|+..+++++
T Consensus        12 ~~~lgidiggt~i~~~l~d   30 (267)
T 1woq_A           12 APLIGIDIGGTGIKGGIVD   30 (267)
T ss_dssp             CCEEEEEECSSEEEEEEEE
T ss_pred             CEEEEEEECCCEEEEEEEE
Confidence            6789999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d1bupa1	185	c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas	3e-23
d1dkgd1	183	c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas	7e-17
d1jcea1	137	c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB	1e-11

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (211), Expect = 3e-23
 Identities = 44/55 (80%), Positives = 46/55 (83%)

Query: 2  PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56
          PA+GIDLG+TYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG       
Sbjct: 2  PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 56

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score = 68.9 bits (168), Expect = 7e-17
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4  IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
          IGIDLGTT SCVA+       ++ N +G+RTTPS +A+T D E L+G
Sbjct: 3  IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 49

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

 Score = 54.4 bits (130), Expect = 1e-11
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 3  AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYV 39
           IGIDLGT  + V +  +G V    +     +T   +
Sbjct: 2  DIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEI 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.75
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	99.71
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	98.74
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.33
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	95.12
d2fsja2	164	Hypothetical protein Ta0583 {Archaeon Thermoplasma	95.03
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	94.28
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	94.06
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	93.42
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	93.02
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	92.9
d1iv0a_	98	Hypothetical protein, YqgF homologue {Thermus ther	92.47
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	92.2
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	91.64
d1vhxa_	140	Hypothetical protein YrrK (RuvX) {Bacillus subtili	90.63
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	90.46
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	88.57
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	88.08
d1hjra_	158	RuvC resolvase {Escherichia coli [TaxId: 562]}	87.33
d2f9wa2	114	Type III pantothenate kinase, CoaX {Pseudomonas ae	87.22
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	86.66
d1nu0a_	138	Hypothetical protein YqgF (RuvX) {Escherichia coli	80.75

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=5.1e-19  Score=117.55  Aligned_cols=72  Identities=61%  Similarity=0.798  Sum_probs=60.0

Q ss_pred             CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPD   79 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~   79 (91)
                      ++||||||||||+||++++++++++.++.+++.+||+|+|.++++++|.+|..+...      ...+.+.++||+||.
T Consensus         2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~------~p~~~i~~~KrllG~   73 (185)
T d1bupa1           2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM------NPTNTVFDAKRLIGR   73 (185)
T ss_dssp             CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTT------CGGGEECCHHHHTTC
T ss_pred             CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECCCcEEEeechHHHhhc------CcccchhHHHHHhCC
Confidence            689999999999999999999999999999999999999998899999999865421      122345567777775

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.71  E-value=7.3e-18  Score=111.71  Aligned_cols=72  Identities=36%  Similarity=0.460  Sum_probs=59.0

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS   80 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~   80 (91)
                      +||||||||||+||+++++++++++++.+++.+||+|+|. ++++++|++|..+...      ..++.+..+||+||..
T Consensus         2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~------~p~~~i~~~KrllG~~   74 (183)
T d1dkgd1           2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT------NPQNTLFAIKRLIGRR   74 (183)
T ss_dssp             CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTT------CGGGEEECGGGTTTCB
T ss_pred             EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhc------CCccEEeeeHHHcCCC
Confidence            6899999999999999999999999999999999999997 5689999999875421      1223455667777754

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=3.9e-09  Score=65.88  Aligned_cols=45  Identities=33%  Similarity=0.474  Sum_probs=29.2

Q ss_pred             eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc---CCeeeeccchhhcc
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT---DTERLIGLRKFWFA   56 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~---~~~~~vG~~A~~~~   56 (91)
                      .||||||||||+||+..++  .++ ++      |+.+++.   +..+.+|++|.+..
T Consensus         2 ~iGIDlGTtns~va~~~~~--~v~-~~------~~~~~~~~~~~~~~~~g~~a~~~~   49 (137)
T d1jcea1           2 DIGIDLGTANTLVFLRGKG--IVV-NE------PSVIAIDSTTGEILKVGLEAKNMI   49 (137)
T ss_dssp             EEEEEECSSEEEEEETTTE--EEE-EE------ESCEEEETTTCCEEEESHHHHTTT
T ss_pred             eEEEEcChhhEEEEEeCCC--EEe-ec------CCcceEecCCCeEEEEehHHhhhh
Confidence            6899999999999975433  233 22      5555554   33466777776543

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.33  E-value=0.0016  Score=41.87  Aligned_cols=21  Identities=33%  Similarity=0.651  Sum_probs=19.0

Q ss_pred             CCeEEEecccceEEEEEEeCC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQG   21 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~   21 (91)
                      |.+||||+|.|++.+++++.+
T Consensus         2 M~~lGIDiGGT~~k~~vvd~~   22 (259)
T d1huxa_           2 IYTLGIDVGSTASKCIILKDG   22 (259)
T ss_dssp             CEEEEEEECSSEEEEEEEETT
T ss_pred             cEEEEEEeCcceEEEEEEcCC
Confidence            889999999999999998753

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0091  Score=34.92  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.4

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |.+||||+|.|+..+++++.
T Consensus         1 M~~lgiDiGgT~i~~~l~d~   20 (119)
T d2aa4a1           1 MTTLAIDIGGTKLAAALIGA   20 (119)
T ss_dssp             CCEEEEEECSSEEEEEEECT
T ss_pred             CeEEEEEeCcCEEEEEEEcC
Confidence            89999999999999999863

>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.03  E-value=0.009  Score=36.90  Aligned_cols=16  Identities=31%  Similarity=0.495  Sum_probs=14.6

Q ss_pred             CCeEEEecccceEEEE
Q psy3438           1 MPAIGIDLGTTYSCVA   16 (91)
Q Consensus         1 m~~iGIDfGTtns~va   16 (91)
                      |.++|||+|..+..++
T Consensus         1 m~iigiD~G~g~tK~~   16 (164)
T d2fsja2           1 MVVVGLDVGYGDTKVI   16 (164)
T ss_dssp             CEEEEEEECSSEEEEE
T ss_pred             CEEEEEEcCCcceEEE
Confidence            8899999999999865

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.06  E-value=0.021  Score=33.37  Aligned_cols=20  Identities=30%  Similarity=0.267  Sum_probs=18.4

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |.+++||+|.|+..+++.+.
T Consensus         1 M~i~~iDiGgT~i~~~l~d~   20 (114)
T d2gupa1           1 MTIATIDIGGTGIKFASLTP   20 (114)
T ss_dssp             CCEEEEEEETTEEEEEEECT
T ss_pred             CeEEEEEeCcccEEEEEEcC
Confidence            89999999999999999863

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.42  E-value=0.033  Score=35.23  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=17.8

Q ss_pred             CCeEEEecccceEEEEEEeCCe
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~~~   22 (91)
                      |. ||||+|.|+..+++++++.
T Consensus         1 Mk-iGIDiGGT~ik~~lvd~~g   21 (267)
T d2ewsa1           1 MK-VGIDAGGTLIKIVQEQDNQ   21 (267)
T ss_dssp             CE-EEEEECSSEEEEEEECSSC
T ss_pred             CE-EEEEEChhhEEEEEEeCCC
Confidence            55 8999999999999987554

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=93.02  E-value=0.013  Score=38.53  Aligned_cols=18  Identities=39%  Similarity=0.588  Sum_probs=16.0

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      ++|||+|||+..+++++.
T Consensus         3 vlgiDiGTtsvKa~l~D~   20 (252)
T d1r59o1           3 VMAIDQGTTSSRAIIFDR   20 (252)
T ss_dssp             EEEEBCCSSBCBCCEECS
T ss_pred             EEEEEecccceeeeEEeC
Confidence            589999999999999863

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=92.90  E-value=0.044  Score=31.52  Aligned_cols=18  Identities=28%  Similarity=0.377  Sum_probs=16.0

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      +||||.|+|++.+++++.
T Consensus         6 ~lGID~GGT~tk~~l~d~   23 (114)
T d1zc6a1           6 LIGVDGGGTGTRIRLHAS   23 (114)
T ss_dssp             EEEEEECSSCEEEEEEET
T ss_pred             EEEEEcCcceEEEEEEcC
Confidence            579999999999999864

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

Probab=92.47  E-value=0.056  Score=31.21  Aligned_cols=20  Identities=25%  Similarity=0.270  Sum_probs=18.2

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |-++|||+|+..+-+|+.+.
T Consensus         1 MriLglD~G~kriGiAisd~   20 (98)
T d1iv0a_           1 MRVGALDVGEARIGLAVGEE   20 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECS
T ss_pred             CcEEEEEcCCCEEEEEEecC
Confidence            88999999999999998754

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.20  E-value=0.078  Score=30.35  Aligned_cols=18  Identities=33%  Similarity=0.567  Sum_probs=16.2

Q ss_pred             eEEEecccceEEEEEEeC
Q psy3438           3 AIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~   20 (91)
                      +||||+|.|+..+++.+.
T Consensus         2 yiGiDiGgT~i~~~l~d~   19 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDS   19 (117)
T ss_dssp             EEEEEECSSEEEEEEEET
T ss_pred             EEEEEECcceEEEEEEeC
Confidence            599999999999999864

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=91.64  E-value=0.083  Score=30.64  Aligned_cols=18  Identities=39%  Similarity=0.542  Sum_probs=16.6

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      ++||||+|-|+..+++++
T Consensus         3 ~vlGiDiGgT~i~~~l~d   20 (129)
T d1woqa1           3 PLIGIDIGGTGIKGGIVD   20 (129)
T ss_dssp             CEEEEEECSSEEEEEEEE
T ss_pred             CEEEEEECcceEEEEEEE
Confidence            689999999999999986

>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

Probab=90.63  E-value=0.072  Score=32.52  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=17.9

Q ss_pred             CCeEEEecccceEEEEEEeC
Q psy3438           1 MPAIGIDLGTTYSCVAVFQQ   20 (91)
Q Consensus         1 m~~iGIDfGTtns~va~~~~   20 (91)
                      |-++|||+|+..+-+|+.+.
T Consensus         2 mriLgiD~G~kriGvAisd~   21 (140)
T d1vhxa_           2 LRILGLDLGTKTLGVALSDE   21 (140)
T ss_dssp             EEEEEEEECSSEEEEEEECT
T ss_pred             ceEEEEEeCCCEEEEEEecC
Confidence            77899999999999998754

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.11  Score=29.53  Aligned_cols=19  Identities=26%  Similarity=0.249  Sum_probs=16.8

Q ss_pred             eEEEecccceEEEEEEeCC
Q psy3438           3 AIGIDLGTTYSCVAVFQQG   21 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~   21 (91)
                      ++++|+|.||+.+|+++.+
T Consensus         4 ~L~~DIGGTn~r~alv~~~   22 (110)
T d1q18a1           4 ALVGDVGGTNARLALCDIA   22 (110)
T ss_dssp             EEEEEECSSEEEEEEEETT
T ss_pred             EEEEEECchhEEEEEEEcC
Confidence            6899999999999998753

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=88.57  E-value=0.36  Score=29.68  Aligned_cols=53  Identities=13%  Similarity=-0.017  Sum_probs=31.0

Q ss_pred             CeEEEecccceEEEEEEeC-CeE--EEEecCCC-------CeeeeEEEEEcCCeeeeccchhh
Q psy3438           2 PAIGIDLGTTYSCVAVFQQ-GKV--EIIANDQG-------NRTTPSYVAFTDTERLIGLRKFW   54 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~-~~~--~il~~~~g-------~~~~PS~V~~~~~~~~vG~~A~~   54 (91)
                      ++||||.|.+|..++...+ +..  .+.++...       ...-+..+.+++....+|..+.+
T Consensus         1 m~I~iD~Gy~nvK~a~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~y~v~G~~Y~vG~~~~~   63 (157)
T d2zgya1           1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD   63 (157)
T ss_dssp             CEEEEEECSSEEEEEEECSSSCEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCBS
T ss_pred             CEEEEecCCCcEEEEEecCCCcEeEEEeccccccccccccCCCceEEEEECCEEEEEcCCccc
Confidence            4789999999999997653 332  34443210       01112223344556889987754

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=88.08  E-value=0.17  Score=28.99  Aligned_cols=20  Identities=30%  Similarity=0.499  Sum_probs=17.6

Q ss_pred             eEEEecccceEEEEEEeCCe
Q psy3438           3 AIGIDLGTTYSCVAVFQQGK   22 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~   22 (91)
                      .+.||.|+|+..++++++++
T Consensus         2 ~L~IDIGNT~ik~~l~~~~~   21 (118)
T d3bexa1           2 YLLVDVGNTHSVFSITEDGK   21 (118)
T ss_dssp             EEEEEECSSEEEEEEESSSS
T ss_pred             EEEEEECCCeEEEEEEECCE
Confidence            57899999999999997764

>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: RuvC resolvase
domain: RuvC resolvase
species: Escherichia coli [TaxId: 562]

Probab=87.33  E-value=0.52  Score=28.90  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=18.6

Q ss_pred             CeEEEecccceEEEEEEe--CCeEEE
Q psy3438           2 PAIGIDLGTTYSCVAVFQ--QGKVEI   25 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~--~~~~~i   25 (91)
                      .++|||.|++++-+|+.+  ++++..
T Consensus         2 iILGIDPGl~~~G~avid~~~~~~~~   27 (158)
T d1hjra_           2 IILGIDPGSRVTGYGVIRQVGRQLSY   27 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEE
T ss_pred             EEEEEccCCCceEEEEEEeeCCEEEE
Confidence            579999999999999864  444443

>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.22  E-value=0.36  Score=27.45  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=18.1

Q ss_pred             eEEEecccceEEEEEEeCCeE
Q psy3438           3 AIGIDLGTTYSCVAVFQQGKV   23 (91)
Q Consensus         3 ~iGIDfGTtns~va~~~~~~~   23 (91)
                      .+-||.|+|+..++++++++.
T Consensus         2 ~LliDiGNT~iK~~~~~~~~~   22 (114)
T d2f9wa2           2 ILELDCGNSLIKWRVIEGAAR   22 (114)
T ss_dssp             EEEEEECSSCEEEEEEETTTE
T ss_pred             EEEEEECCCeEEEEEEECCeE
Confidence            578999999999999987654

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=86.66  E-value=0.27  Score=28.16  Aligned_cols=18  Identities=33%  Similarity=0.172  Sum_probs=16.2

Q ss_pred             CeEEEecccceEEEEEEe
Q psy3438           2 PAIGIDLGTTYSCVAVFQ   19 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~   19 (91)
                      .++|||+|.|+..+++++
T Consensus         1 l~~giDiGgT~i~~~l~d   18 (118)
T d1xc3a1           1 MLGGIEAGGTKFVCAVGR   18 (118)
T ss_dssp             CEEEEEECSSEEEEEEEC
T ss_pred             CEEEEEeccCEEEEEEEc
Confidence            368999999999999986

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=80.75  E-value=0.77  Score=27.54  Aligned_cols=20  Identities=35%  Similarity=0.282  Sum_probs=17.2

Q ss_pred             CeEEEecccceEEEEEEeCC
Q psy3438           2 PAIGIDLGTTYSCVAVFQQG   21 (91)
Q Consensus         2 ~~iGIDfGTtns~va~~~~~   21 (91)
                      .++|||+|+-.+-+|+.+..
T Consensus         4 riLgiD~G~kriGvAvsd~~   23 (138)
T d1nu0a_           4 TLMAFDFGTKSIGVAVGQRI   23 (138)
T ss_dssp             EEEEEECCSSEEEEEEEETT
T ss_pred             cEEEEEeCCCEEEEEEeCCC
Confidence            47999999999999997643