Psyllid ID: psy3452

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT
Secondary Structure (PSIPRED)
cEEEEEEEccccHHHcccHHHHHHHHHHcccccccEEEEccccccccHHHHcccccccEEEEcccccEEEEccccccccccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHcccHHHHcccccccccEEccccccccccccccccc
Coil and Loop (DISEMBL)
mfysilfyspgcgyckkakpEYVKAAEVLKDNHKVALAAIdctehgplckeydikgyptfHHLALTIMIIRLALAAIdctehgplckeydikgyptfqyfhyfnkqspspyhndyt
Flexible Loop (DISEMBL)
MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHyfnkqspspyhndyt
Low Complexity Region (SEG)
MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT
Disordered region (IsUnstruct)
*FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFN************
Disordered Region (DISOPRED)
MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF****************
Disordered Region (DISEMBL)
MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT
Disordered Region (DISPRO)
MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q54EN4	513	Protein disulfide-isomera	yes	N/A	0.474	0.107	0.5	2e-12
Q10057	492	Putative protein disulfid	yes	N/A	0.482	0.113	0.491	4e-11
P17967	522	Protein disulfide-isomera	yes	N/A	0.456	0.101	0.518	3e-10
Q2KIL5	521	Protein disulfide-isomera	yes	N/A	0.5	0.111	0.466	3e-10
Q14554	519	Protein disulfide-isomera	yes	N/A	0.5	0.111	0.433	1e-09
Q43116	498	Protein disulfide-isomera	N/A	N/A	0.508	0.118	0.483	2e-09
O22263	361	Protein disulfide-isomera	yes	N/A	0.474	0.152	0.436	3e-09
Q5I0H9	517	Protein disulfide-isomera	yes	N/A	0.5	0.112	0.416	3e-09
Q17770	493	Protein disulfide-isomera	yes	N/A	0.508	0.119	0.416	4e-09
P09102	515	Protein disulfide-isomera	no	N/A	0.456	0.102	0.462	4e-09

>sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           ++FY+P CG+CK  KP Y +AA+ L  N K+A+A +DCT+H  LCK+  ++GYPT 
Sbjct: 63  VMFYAPWCGHCKTLKPLYEEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQGYPTL 118

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.
Dictyostelium discoideum (taxid: 44689)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q10057|PDI1_SCHPO Putative protein disulfide-isomerase C1F5.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.02 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          + FY+P CG+CK   PEY  AA+ L+ +  ++L  +DCTE G LC EY I+GYPT +
Sbjct: 44 VKFYAPWCGHCKALAPEYESAADELEKD-GISLVEVDCTEEGDLCSEYSIRGYPTLN 99

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P17967|PDI_YEAST Protein disulfide-isomerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDI1 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           F++P CG+CK   PEYVKAAE L + + + LA IDCTE+  LC E++I G+P+ 
Sbjct: 56  FFAPWCGHCKNMAPEYVKAAETLVEKN-ITLAQIDCTENQDLCMEHNIPGFPSL 108

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q2KIL5|PDIA5_BOVIN Protein disulfide-isomerase A5 OS=Bos taurus GN=PDIA5 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG--PLCKEYDIKGYPTFHH 62
           ++FY+P C +CKKA P +  AA+  KD+ K+A AAIDC +     LC++  +K YPTFH+
Sbjct: 421 VMFYAPWCPHCKKAIPHFTAAADAFKDDRKIACAAIDCVKENNKDLCQQEAVKAYPTFHY 480

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q14554|PDIA5_HUMAN Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHH 62
           ++FY+P C +CKK  P +   A+  KD+ K+A AA+DC   ++  LC++  +KGYPTFH+
Sbjct: 419 VMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQEAVKGYPTFHY 478

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q43116|PDI_RICCO Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 2   FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHG--PLCKEYDIKGYP 58
           F  + FY+P CG+CKK +PEY KAA +LK +   V LA +D  E     L  +YDIKG+P
Sbjct: 51  FIVVEFYAPWCGHCKKLRPEYEKAASILKSHDIPVVLAKVDANEEANKELATQYDIKGFP 110

Query: 59  TF 60
           T 
Sbjct: 111 TL 112

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Ricinus communis (taxid: 3988)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|O22263|PDI21_ARATH Protein disulfide-isomerase like 2-1 OS=Arabidopsis thaliana GN=PDIL2-1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
           FY+P CG+CKK  PEY K     K    V +A +DC E   +C +Y + GYPT  
Sbjct: 47  FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEQKSVCTKYGVSGYPTIQ 101

Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5I0H9|PDIA5_RAT Protein disulfide-isomerase A5 OS=Rattus norvegicus GN=Pdia5 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHH 62
           ++FY+P C +CKK  P +   A+  KD+ K+A AA+DC   ++  LC++  +K YPTFH+
Sbjct: 417 VMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQESVKAYPTFHY 476

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q17770|PDI2_CAEEL Protein disulfide-isomerase 2 OS=Caenorhabditis elegans GN=pdi-2 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 2   FYSILFYSPGCGYCKKAKPEYVKAAEVLKDN-HKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           F  + FY+P CG+CK   PEY KAA  LK+    + L  +D T HG +  +++++GYPT 
Sbjct: 42  FILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHGEVSSKFEVRGYPTL 101

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P09102|PDIA1_CHICK Protein disulfide-isomerase OS=Gallus gallus GN=P4HB PE=1 SV=3

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           FY+P CG+CK   PEY KAA  LK +  ++ LA +D TE   L +++ ++GYPT
Sbjct: 53  FYAPWCGHCKALAPEYAKAAAQLKAEGSEIRLAKVDATEEAELAQQFGVRGYPT 106

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase.

Gallus gallus (taxid: 9031)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
427794071	454	Putative thioredoxin/protein disulfide i	0.508	0.129	0.583	8e-15
427792201	618	Putative thioredoxin/protein disulfide i	0.508	0.095	0.583	2e-14
427794105	654	Putative thioredoxin/protein disulfide i	0.508	0.090	0.583	2e-14
427789011	653	Putative thioredoxin/protein disulfide i	0.508	0.090	0.583	2e-14
157118499	636	protein disulfide isomerase [Aedes aegyp	0.508	0.092	0.533	6e-14
291238278	691	PREDICTED: AGAP010217-PA-like [Saccoglos	0.5	0.083	0.559	1e-13
170070720	600	disulfide-isomerase A5 [Culex quinquefas	0.491	0.095	0.533	3e-13
449668684	714	PREDICTED: protein disulfide-isomerase A	0.482	0.078	0.542	4e-13
254574366	471	Protein disulfide isomerase, multifuncti	0.413	0.101	0.611	8e-13
193290418	517	protein disulphide isomerase [Komagatael	0.413	0.092	0.611	9e-13

>gi|427794071|gb|JAA62487.1| Putative thioredoxin/protein disulfide isomerase, partial [Rhipicephalus pulchellus]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           ++FY+P C +CK+AKPE+  AAE LKD+ KVALAA+DCTEH  +C  YD+ GYPTF + +
Sbjct: 200 VMFYAPWCVHCKRAKPEFQAAAEELKDDPKVALAAVDCTEHSGVCNAYDVAGYPTFKYFS 259

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792201|gb|JAA61552.1| Putative thioredoxin/protein disulfide isomerase, partial [Rhipicephalus pulchellus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           ++FY+P C +CK+AKPE+  AAE LKD+ KVALAA+DCTEH  +C  YD+ GYPTF + +
Sbjct: 387 VMFYAPWCVHCKRAKPEFQAAAEELKDDPKVALAAVDCTEHSGVCNAYDVAGYPTFKYFS 446

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427794105|gb|JAA62504.1| Putative thioredoxin/protein disulfide isomerase, partial [Rhipicephalus pulchellus]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           ++FY+P C +CK+AKPE+  AAE LKD+ KVALAA+DCTEH  +C  YD+ GYPTF + +
Sbjct: 423 VMFYAPWCVHCKRAKPEFQAAAEELKDDPKVALAAVDCTEHSGVCNAYDVAGYPTFKYFS 482

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789011|gb|JAA59957.1| Putative thioredoxin/protein disulfide isomerase [Rhipicephalus pulchellus]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           ++FY+P C +CK+AKPE+  AAE LKD+ KVALAA+DCTEH  +C  YD+ GYPTF + +
Sbjct: 422 VMFYAPWCVHCKRAKPEFQAAAEELKDDPKVALAAVDCTEHSGVCNAYDVAGYPTFKYFS 481

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118499|ref|XP_001659136.1| protein disulfide isomerase [Aedes aegypti] gi|108875688|gb|EAT39913.1| AAEL008319-PA [Aedes aegypti]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           ++FY+P CG+CK+AKPE+  AAE  KD+ KVALAA+DCT H  +C  Y+++GYPT  + +
Sbjct: 420 VMFYAPWCGHCKRAKPEFANAAEQFKDDPKVALAAVDCTRHNGICSAYEVRGYPTMKYFS 479

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291238278|ref|XP_002739058.1| PREDICTED: AGAP010217-PA-like [Saccoglossus kowalevskii]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
           ++FY+P CG+CKKAKPE+  AAE  KDN+KVA AA+DCT    +C  YD+ GYPT  + 
Sbjct: 349 VMFYAPWCGHCKKAKPEFTSAAETFKDNNKVAYAAVDCTAETEICSTYDVSGYPTLKYF 407

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|170070720|ref|XP_001869687.1| disulfide-isomerase A5 [Culex quinquefasciatus] gi|167866645|gb|EDS30028.1| disulfide-isomerase A5 [Culex quinquefasciatus]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 47/60 (78%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           ++FY+P CG+CK+AKPE+ KAAE  K++ KVALAA+DCT H  +C  Y+++GYPT  + +
Sbjct: 383 VMFYAPWCGHCKRAKPEFGKAAEHFKEDPKVALAAVDCTRHNGVCSAYEVRGYPTLKYFS 442

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449668684|ref|XP_004206845.1| PREDICTED: protein disulfide-isomerase A5-like, partial [Hydra magnipapillata]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
           ++FY+P CG+CKKAKPE   AAE  KD+ K+  A +DCT H  LCK Y++ GYPTF + 
Sbjct: 483 VMFYAPWCGHCKKAKPEIEAAAEYFKDDRKITFAGVDCTVHDALCKSYEVSGYPTFRYF 541

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|254574366|ref|XP_002494292.1| Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen [Komagataella pastoris GS115] gi|238034091|emb|CAY72113.1| Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen [Komagataella pastoris GS115]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           F++P CG+CKK  PE V AAE+LKDN +V +A IDCTE   LC+ Y+IKGYPT 
Sbjct: 57  FFAPWCGHCKKLGPELVSAAEILKDNEQVKIAQIDCTEEKELCQGYEIKGYPTL 110

Source: Komagataella pastoris GS115

Species: Komagataella pastoris

Genus: Komagataella

Family: Saccharomycetaceae

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|193290418|gb|ACF17572.1| protein disulphide isomerase [Komagataella pastoris] gi|328353886|emb|CCA40283.1| prolyl 4-hydroxylase, beta polypeptide [Komagataella pastoris CBS 7435]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           F++P CG+CKK  PE V AAE+LKDN +V +A IDCTE   LC+ Y+IKGYPT 
Sbjct: 57  FFAPWCGHCKKLGPELVSAAEILKDNEQVKIAQIDCTEEKELCQGYEIKGYPTL 110

Source: Komagataella pastoris

Species: Komagataella pastoris

Genus: Komagataella

Family: Saccharomycetaceae

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0032514	510	CG9302 [Drosophila melanogaste	0.474	0.107	0.490	1.7e-12
ZFIN|ZDB-GENE-030521-5	541	pdia5 "protein disulfide isome	0.5	0.107	0.45	1.8e-11
FB|FBgn0030329	416	prtp "pretaporter" [Drosophila	0.474	0.132	0.428	3.4e-16
DICTYBASE|DDB_G0291434	513	pdi2 "protein disulfide isomer	0.474	0.107	0.509	4.4e-16
UNIPROTKB|E1BUP6	531	PDIA5 "Uncharacterized protein	0.5	0.109	0.45	6e-11
POMBASE|SPAC1F5.02	492	SPAC1F5.02 "protein disulfide	0.474	0.111	0.517	1.1e-15
UNIPROTKB|F1SQ40	524	PDIA5 "Uncharacterized protein	0.5	0.110	0.433	9.7e-11
UNIPROTKB|Q14554	519	PDIA5 "Protein disulfide-isome	0.5	0.111	0.433	4.5e-11
MGI|MGI:104864	638	Pdia4 "protein disulfide isome	0.456	0.083	0.518	8.7e-13
RGD|619835	643	Pdia4 "protein disulfide isome	0.456	0.082	0.518	1.4e-12

FB|FBgn0032514 CG9302 [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
             ++FY+P CG+CK  KPE+  AA  L+D+ ++A  AIDCT+   LC +Y+++GYPT
Sbjct:   418 VMFYAPWCGHCKHTKPEFTAAATALQDDPRIAFVAIDCTKLAALCAKYNVRGYPT 472

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

ZFIN|ZDB-GENE-030521-5 pdia5 "protein disulfide isomerase family A, member 5" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 27/60 (45%), Positives = 44/60 (73%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHH 62
             ++FY+P C +CK A P +  AAE+ K++ K+A AA+DCT  ++  LCK+  ++GYPTF++
Sbjct:   441 VMFYAPWCPHCKNAVPHFTTAAEMFKEDRKIAYAAVDCTKGQNHELCKQEGVEGYPTFNY 500

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

FB|FBgn0030329 prtp "pretaporter" [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
 Identities = 24/56 (42%), Positives = 39/56 (69%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
             + F++P CG+CK+ +P + + AE++  DN KV +A +DCT+H  LC  + + GYPT
Sbjct:    58 VKFFAPWCGHCKRIQPLWEQLAEIMNVDNPKVIIAKVDCTKHQGLCATHQVTGYPT 113

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS;IDA

GO:0009986 "cell surface" evidence=IDA

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:2000427 "positive regulation of apoptotic cell clearance" evidence=IMP

DICTYBASE|DDB_G0291434 pdi2 "protein disulfide isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 175 (66.7 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
             ++FY+P CG+CK  KP Y +AA+ L  N K+A+A +DCT+H  LCK+  ++GYPT
Sbjct:    63 VMFYAPWCGHCKTLKPLYEEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQGYPT 117

GO:0005615 "extracellular space" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0019953 "sexual reproduction" evidence=IEP

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=ISS

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E1BUP6 PDIA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 161 (61.7 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 27/60 (45%), Positives = 42/60 (70%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHH 62
             ++FY+P C +CK A P +  AAEV K++ K+A AA+DC   ++  LCK+  + GYPTF++
Sbjct:   431 VMFYAPWCPHCKNAIPHFTTAAEVFKEDRKIAYAAVDCAKDQNHDLCKQEGVDGYPTFNY 490

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

POMBASE|SPAC1F5.02 SPAC1F5.02 "protein disulfide isomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 165 (63.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
             + FY+P CG+CK   PEY  AA+ L KD   ++L  +DCTE G LC EY I+GYPT +
Sbjct:    44 VKFYAPWCGHCKALAPEYESAADELEKDG--ISLVEVDCTEEGDLCSEYSIRGYPTLN 99

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1SQ40 PDIA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIKGYPTFHH 62
             ++FY+P C +CKK  P +   A+V KD+ K+A AA+DC +  +  LC++  +K YPTFH+
Sbjct:   424 VMFYAPWCPHCKKVIPHFTATADVFKDDRKIACAAVDCIKEKNQDLCQQEAVKAYPTFHY 483

GO:0006950 "response to stress" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|Q14554 PDIA5 "Protein disulfide-isomerase A5" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query:     5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIKGYPTFHH 62
             ++FY+P C +CKK  P +   A+  KD+ K+A AA+DC +  +  LC++  +KGYPTFH+
Sbjct:   419 VMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQEAVKGYPTFHY 478

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0003756 "protein disulfide isomerase activity" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=TAS

GO:0006950 "response to stress" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

MGI|MGI:104864 Pdia4 "protein disulfide isomerase associated 4" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query:     7 FYSPGCGYCKKAKPEYVKAA-EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
             FY+P CG+CKK  PEY KAA E+ K +  + LA +D TE   L K +D+ GYPT
Sbjct:   194 FYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPT 247

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0006457 "protein folding" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=ISO;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|619835 Pdia4 "protein disulfide isomerase family A, member 4" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query:     7 FYSPGCGYCKKAKPEYVKAA-EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
             FY+P CG+CKK  PEY KAA E+ K +  + LA +D TE   L K +D+ GYPT
Sbjct:   199 FYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPT 252

GO:0003756 "protein disulfide isomerase activity" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0006457 "protein folding" evidence=IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P17967	PDI_YEAST	5, ., 3, ., 4, ., 1	0.5185	0.4568	0.1015	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	2e-22
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	3e-22
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	7e-20
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	1e-18
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-17
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	4e-17
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	2e-15
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	5e-15
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-12
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	4e-12
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	2e-11
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	3e-10
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	3e-10
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	8e-10
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-08
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	1e-08
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	2e-07
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	6e-07
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	9e-07
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	2e-05
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	3e-05
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	2e-04
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	9e-04

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 83.8 bits (208), Expect = 2e-22
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + FY+P CG+CK   PEY K A+ LK + KV +A +DCT +  LC EY ++GYPT 
Sbjct: 20 VEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTI 75

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 83.5 bits (207), Expect = 3e-22
 Identities = 33/60 (55%), Positives = 46/60 (76%), Gaps = 2/60 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHH 62
          ++FY+P CG+CKK KPE+ KAA  LK++ K  LAA+DCT  EH  L +EY++KG+PTF +
Sbjct: 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 82.8 bits (205), Expect = 7e-20
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FY+P CG+CK   PEY KAA+ LK     + LA +D TE   L ++Y + GYPT
Sbjct: 25 FYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPT 78

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 73.9 bits (182), Expect = 1e-18
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          + FY+P CG+CK   PEY K A+ LK +  + LA +D T    L   + + G+PT
Sbjct: 18 VEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLASRFGVSGFPT 72

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 71.1 bits (175), Expect = 2e-17
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          + FY+P CG CK   PEY K A+  KD+  V  A +D  E+  L  EY ++G+PT  
Sbjct: 23 VDFYAPWCGPCKALAPEYEKLAQEYKDD--VKFAKVDADENPDLASEYGVRGFPTIK 77

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 70.4 bits (173), Expect = 4e-17
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          + FY+P CG+CK   PE+ KAA+ LK    V + A+D   H  L ++Y ++G+PT
Sbjct: 23 VEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPT 75

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 65.8 bits (161), Expect = 2e-15
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 4/55 (7%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIKGYPT 59
          FY+P CG+CK  KPEY KAA+ L  +  V +AA+DC E  + PLC +Y ++G+PT
Sbjct: 25 FYAPWCGHCKNLKPEYAKAAKEL--DGLVQVAAVDCDEDKNKPLCGKYGVQGFPT 77

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 65.0 bits (159), Expect = 5e-15
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-HGPLCKEYDIKGYPT 59
          FY+P CG+CK   PEY K A V  +   V +A +D  E +  L K+Y + G+PT
Sbjct: 25 FYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT 78

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 61.3 bits (149), Expect = 3e-12
 Identities = 26/56 (46%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           + FY+P CG+CK+  PEY KAA++LK+   ++ LA++D TE   L +E+ ++GYPT
Sbjct: 54  VKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPT 109

Length = 477

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 57.3 bits (139), Expect = 4e-12
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 5  ILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          + F++P CG+CK+  P + + A +   +N  V +A +DCT+H  LC E+ ++GYPT
Sbjct: 21 VKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 55.8 bits (135), Expect = 2e-11
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FY+P CG C+   PE  KAA  LK   KV + ++DC ++  LC++ +I+ YPT
Sbjct: 26 FYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPT 76

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 52.6 bits (127), Expect = 3e-10
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPT 59
          + FY+P CG+CK   P Y + AE LK +  V +A +D T  +      E+ + G+PT
Sbjct: 23 VEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPS---EFVVDGFPT 76

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 52.5 bits (126), Expect = 3e-10
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FY+P CG+CKK +P + +    LK     V +  +D T +  +  E+ ++GYPT
Sbjct: 22 FYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPT 75

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 51.0 bits (123), Expect = 8e-10
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
          + F++P CG CK   P      E+ ++  KV    +D  E+  L +EY ++  PTF   
Sbjct: 15 VDFWAPWCGPCKAIAPVL---EELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           + FY+P CG+CK   P Y + AE  KD    V +A +D T +      ++++G+PT
Sbjct: 369 VEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPPFEVEGFPT 422

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHK-VALAAIDCT--EHGPLCKEYDIKGYPTF 60
          FY+  CG+C+   P + K A  L+     V +AA+DC   E+  LC+++ + GYPT 
Sbjct: 26 FYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           FY+P C +C+K  P + + A+ LK   +V +A +D T    L K + IKGYPT 
Sbjct: 59  FYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKGYPTL 110

Length = 224

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           +  Y+P CG+CK  +P Y +  E  KDN  + +A ++ T +    +E+    +PT
Sbjct: 380 LEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434

Length = 477

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 42.7 bits (100), Expect = 9e-07
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTF 60
          +LFY+P C +C+  +P     AE+   N  V   A+D  E   L    K Y + G PT 
Sbjct: 2  VLFYAPWCPFCQALRPV---LAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTL 57

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLK----DNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FY+  C + +   P + +AA  +K    D  KV    +DC +   +   Y I  YPT
Sbjct: 25 FYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FYSP C +C    P + + A+ +    ++   A++C +   LC+   +  YP+
Sbjct: 25 FYSPRCSHCHDLAPTWREFAKEMDGVIRIG--AVNCGDDRMLCRSQGVNSYPS 75

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
          I FY+P C  C++ +PE+ + A+   D+  + +A +D T+   L   + +   PT +H
Sbjct: 21 IEFYAPWCPACQQLQPEWEEFADW-SDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 35.9 bits (83), Expect = 9e-04
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 14/70 (20%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLC-------------K 50
          ++F  P C YCKK   E +K  +V +       +  ++  +   +              +
Sbjct: 10 VVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKELAR 69

Query: 51 EYDIKGYPTF 60
          +Y ++G PT 
Sbjct: 70 KYGVRGTPTI 79

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.86
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.86
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.85
KOG0910|consensus	150		99.85
PHA02278	103	thioredoxin-like protein	99.82
KOG0907|consensus	106		99.82
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.82
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.81
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.81
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.81
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.8
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.8
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.8
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.8
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.79
KOG0191|consensus	383		99.79
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.79
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.78
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.78
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.78
KOG0190|consensus	493		99.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.77
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.77
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.77
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.77
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.77
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.76
KOG4277|consensus	468		99.76
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.76
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.75
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.75
KOG0190|consensus	493		99.75
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.74
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.74
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.74
PRK09381	109	trxA thioredoxin; Provisional	99.74
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.73
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.73
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.73
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.73
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.72
PRK10996	139	thioredoxin 2; Provisional	99.72
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.72
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.72
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.71
KOG0908|consensus	288		99.7
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.7
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.69
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.69
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.69
PTZ00051	98	thioredoxin; Provisional	99.69
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.68
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.68
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.68
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.67
PTZ00102	477	disulphide isomerase; Provisional	99.67
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.66
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.66
PLN02309	457	5'-adenylylsulfate reductase	99.66
PTZ00102	477	disulphide isomerase; Provisional	99.65
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.65
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.64
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.63
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.62
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.62
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.6
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.58
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.56
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.55
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.55
KOG0912|consensus	375		99.55
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.55
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.55
PTZ00062	204	glutaredoxin; Provisional	99.55
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.54
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.54
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.52
PHA02125	75	thioredoxin-like protein	99.51
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.51
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.51
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.5
KOG1731|consensus	606		99.49
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.48
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.48
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.47
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.47
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.47
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.46
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.45
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.44
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.4
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.38
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.34
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.34
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.33
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.31
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.31
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.28
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.27
PLN02412	167	probable glutathione peroxidase	99.27
KOG0191|consensus	383		99.26
PTZ00056	199	glutathione peroxidase; Provisional	99.21
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.21
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.2
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.18
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.13
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.12
KOG2501|consensus	157		99.12
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.11
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.1
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.1
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.08
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.06
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	99.04
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.02
PTZ00256	183	glutathione peroxidase; Provisional	99.01
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.99
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.99
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.98
KOG0914|consensus	265		98.95
PRK13190	202	putative peroxiredoxin; Provisional	98.95
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.92
PRK15000	200	peroxidase; Provisional	98.91
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.9
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.9
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.83
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.82
PRK13599	215	putative peroxiredoxin; Provisional	98.78
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.76
smart00594	122	UAS UAS domain.	98.73
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.73
PRK13189	222	peroxiredoxin; Provisional	98.72
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.72
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.72
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.7
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.67
PF13728	215	TraF: F plasmid transfer operon protein	98.64
PRK13191	215	putative peroxiredoxin; Provisional	98.64
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.59
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.52
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.52
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.51
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.51
KOG0913|consensus	248		98.51
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.49
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.48
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.46
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.46
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.44
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.41
PRK11200	85	grxA glutaredoxin 1; Provisional	98.39
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.39
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.3
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.29
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.28
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.25
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.24
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.23
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.2
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.2
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.12
KOG0910|consensus	150		98.11
KOG3425|consensus	128		98.1
KOG0911|consensus	227		98.07
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.05
KOG1672|consensus	211		98.03
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.02
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.98
KOG3414|consensus	142		97.97
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.94
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.91
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.9
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.89
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.89
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.87
PRK10996	139	thioredoxin 2; Provisional	97.87
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.81
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.81
PHA03050	108	glutaredoxin; Provisional	97.8
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.8
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.79
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.78
PRK09381	109	trxA thioredoxin; Provisional	97.77
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.75
PHA02278	103	thioredoxin-like protein	97.75
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.75
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.75
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.74
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.74
KOG0912|consensus	375		97.73
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.71
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.69
PTZ00051	98	thioredoxin; Provisional	97.68
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.68
PRK10329	81	glutaredoxin-like protein; Provisional	97.67
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	97.67
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	97.67
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.66
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.66
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.66
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.66
KOG4277|consensus	468		97.65
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.63
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	97.56
KOG0907|consensus	106		97.56
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.56
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	97.53
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	97.51
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.47
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	97.45
PRK10638	83	glutaredoxin 3; Provisional	97.45
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.4
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.39
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.37
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.34
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.33
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.33
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.33
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.31
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	97.3
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.29
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.29
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.18
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	97.15
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.15
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	97.15
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.14
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.14
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	97.04
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.04
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.0
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.93
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	96.89
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.86
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	96.76
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.73
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	96.68
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	96.68
cd02978	72	KaiB_like KaiB-like family; composed of the circad	96.61
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	96.6
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.54
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	96.41
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	96.41
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	96.34
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.31
KOG1752|consensus	104		96.2
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.19
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.12
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	96.08
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	96.04
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	96.04
KOG2603|consensus	331		96.01
PRK10824	115	glutaredoxin-4; Provisional	95.99
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	95.84
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	95.8
KOG0908|consensus	288		95.75
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	95.74
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	95.68
KOG1731|consensus	606		95.68
KOG3170|consensus	240		95.57
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	95.49
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	95.46
PHA02125	75	thioredoxin-like protein	95.35
PTZ00062	204	glutaredoxin; Provisional	95.34
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	95.33
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	95.32
KOG3171|consensus	273		95.27
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	95.23
PRK09301	103	circadian clock protein KaiB; Provisional	95.11
KOG2640|consensus	319		95.08
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	94.85
PLN02309	457	5'-adenylylsulfate reductase	94.72
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	94.51
COG1331	667	Highly conserved protein containing a thioredoxin	94.37
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	94.3
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	93.84
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	93.65
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	93.4
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	93.24
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	93.14
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	93.09
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	93.08
KOG0914|consensus	265		92.89
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	92.85
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	92.62
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	92.26
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	92.1
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	92.06
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	91.85
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	91.68
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	91.38
PRK12559	131	transcriptional regulator Spx; Provisional	91.26
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	91.2
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	91.2
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	91.1
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	91.07
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	90.85
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	90.8
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	90.52
smart00594	122	UAS UAS domain.	90.28
COG2143	182	Thioredoxin-related protein [Posttranslational mod	89.9
PHA03075	123	glutaredoxin-like protein; Provisional	89.66
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	89.5
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	89.28
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	89.05
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	88.95
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	88.81
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	88.09
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	87.55
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	87.26
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	87.01
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	86.93
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	86.64
KOG3171|consensus	273		86.41
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	85.99
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	85.95
KOG1672|consensus	211		85.86
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	85.58
COG3019	149	Predicted metal-binding protein [General function	85.22
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	84.11
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	83.98
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	83.32
KOG2603|consensus	331		83.28
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	82.7
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	82.52
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	81.23
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	81.04
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	80.37
KOG0913|consensus	248		80.16
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	80.05

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.86  E-value=7.1e-22  Score=118.20  Aligned_cols=63  Identities=19%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++++++  .+.++++|++++++++++++|+++||+++|++|
T Consensus        16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G   78 (114)
T cd02954          16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN   78 (114)
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence            689999999999999999999999999986  678999999999999999999999999999986

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.86  E-value=1.5e-21  Score=117.25  Aligned_cols=74  Identities=22%  Similarity=0.385  Sum_probs=56.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|+|||+||++|+.+.|.++++++.+++  .+.                                     ++++||+
T Consensus        30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~-------------------------------------~~~Vd~d   70 (113)
T cd03006          30 EVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVL-------------------------------------FVAINCW   70 (113)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeE-------------------------------------EEEEECC
Confidence            3689999999999999999999999999875  344                                     4555656


Q ss_pred             Cccchh-hhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          81 EHGPLC-KEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        81 ~~~~~~-~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+.+++ ++|+|.++||+.+|++|+.  ...|.|..
T Consensus        71 ~~~~l~~~~~~I~~~PTl~lf~~g~~--~~~y~G~~  104 (113)
T cd03006          71 WPQGKCRKQKHFFYFPVIHLYYRSRG--PIEYKGPM  104 (113)
T ss_pred             CChHHHHHhcCCcccCEEEEEECCcc--ceEEeCCC
Confidence            556666 4677777777777776654  36677664

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.85  E-value=8.9e-21  Score=111.76  Aligned_cols=74  Identities=24%  Similarity=0.606  Sum_probs=58.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+||++||++|+++.|.++++++.+++  .+                                     .++.+|+++
T Consensus        20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~-------------------------------------~~~~vd~~~   60 (101)
T cd03003          20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VI-------------------------------------RIGAVNCGD   60 (101)
T ss_pred             eEEEEEECCCChHHHHhHHHHHHHHHHhcC--ce-------------------------------------EEEEEeCCc
Confidence            689999999999999999999999999875  34                                     445566666


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +..++++++|+++||+++|++|+.  ...|.|..+
T Consensus        61 ~~~~~~~~~v~~~Pt~~~~~~g~~--~~~~~G~~~   93 (101)
T cd03003          61 DRMLCRSQGVNSYPSLYVFPSGMN--PEKYYGDRS   93 (101)
T ss_pred             cHHHHHHcCCCccCEEEEEcCCCC--cccCCCCCC
Confidence            667777888888888888877754  356777653

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0910|consensus

Probab=99.85  E-value=2.4e-21  Score=119.51  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=59.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCcee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTI   67 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v   67 (116)
                      .||+|+|||+||++|+.+.|.++++.+++.+  .+.++++|.+++.+++.+|+|+.+||+++|++|.
T Consensus        62 ~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe  126 (150)
T KOG0910|consen   62 VPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGE  126 (150)
T ss_pred             CCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEEEECCE
Confidence            3799999999999999999999999999987  8999999999999999999999999999888863

>PHA02278 thioredoxin-like protein

Probab=99.82  E-value=2.9e-20  Score=110.04  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=49.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc----ccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH----GPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.+..  .+.+.++|++.+    ++++++++|+++||+++|++|
T Consensus        16 ~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G   82 (103)
T PHA02278         16 DVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG   82 (103)
T ss_pred             cEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence            689999999999999999999999887654  466788888875    356666666666666666654

>KOG0907|consensus

Probab=99.82  E-value=2.8e-20  Score=110.36  Aligned_cols=63  Identities=32%  Similarity=0.552  Sum_probs=58.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+|||+|+.+.|.+.+++++|++   +.|+++|++++.++++++++...||+.|+++|
T Consensus        22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g   84 (106)
T KOG0907|consen   22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG   84 (106)
T ss_pred             CeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence            3689999999999999999999999999984   89999999998899999999999999999886

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.82  E-value=1.6e-19  Score=107.61  Aligned_cols=81  Identities=20%  Similarity=0.443  Sum_probs=64.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|.|||+||++|+++.|.++++++.+++..            +   ..                  +.+.++.+||++
T Consensus        20 ~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~------------~---~~------------------~~~~~~~vd~d~   66 (108)
T cd02996          20 LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF------------P---DA------------------GKVVWGKVDCDK   66 (108)
T ss_pred             EEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc------------C---CC------------------CcEEEEEEECCC
Confidence            68999999999999999999999998875421            0   00                  135678888888


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.+++++|+|+++||+++|++|+.. ...|.|..+
T Consensus        67 ~~~l~~~~~v~~~Ptl~~~~~g~~~-~~~~~g~~~  100 (108)
T cd02996          67 ESDIADRYRINKYPTLKLFRNGMMM-KREYRGQRS  100 (108)
T ss_pred             CHHHHHhCCCCcCCEEEEEeCCcCc-ceecCCCCC
Confidence            8889999999999999999887643 577888653

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.81  E-value=1.1e-19  Score=107.61  Aligned_cols=62  Identities=21%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+|||+||++|+.+.|.++++++.++   .+.++++|++++.   +++++++|+++||++++++
T Consensus        16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985          16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            379999999999999999999999999983   5788888887764   4555555555555555554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.81  E-value=1.3e-19  Score=108.61  Aligned_cols=64  Identities=17%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+|||+||++|+.+.|.++++++.+++. ++.++++|+++++.++++++|+++||++++++
T Consensus        25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~   88 (111)
T cd02963          25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGIIN   88 (111)
T ss_pred             CeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence            47999999999999999999999999999753 36666776666666666666666666665554

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.81  E-value=1.1e-19  Score=107.13  Aligned_cols=40  Identities=18%  Similarity=0.479  Sum_probs=33.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++|+|||+||++|+.+.|.++++++.+++   +.++++|.+
T Consensus        19 ~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~   58 (100)
T cd02999          19 DYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEES   58 (100)
T ss_pred             CEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECC
Confidence            4799999999999999999999999999863   555555544

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.80  E-value=1.4e-19  Score=107.07  Aligned_cols=74  Identities=32%  Similarity=0.612  Sum_probs=55.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+|||+||++|+++.|.++++++.+++  .+                                     .++.+|++.
T Consensus        21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~-------------------------------------~~~~vd~~~   61 (104)
T cd03004          21 PWLVDFYAPWCGPCQALLPELRKAARALKG--KV-------------------------------------KVGSVDCQK   61 (104)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhcC--Cc-------------------------------------EEEEEECCc
Confidence            689999999999999999999999999864  34                                     445556666


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+++++++|+++||+++|++|++ ....|.|..
T Consensus        62 ~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~~G~~   94 (104)
T cd03004          62 YESLCQQANIRAYPTIRLYPGNAS-KYHSYNGWH   94 (104)
T ss_pred             hHHHHHHcCCCcccEEEEEcCCCC-CceEccCCC
Confidence            666777777777777777766632 145566643

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.80  E-value=2.1e-19  Score=107.02  Aligned_cols=64  Identities=13%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+|+|+|+|+||++|+.+.|.++++++++++  .+.++++|+++.+++++.|+++..||++||+++
T Consensus        15 klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkng   78 (114)
T cd02986          15 KVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG   78 (114)
T ss_pred             CEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence            4799999999999999999999999999975  499999999999999999999999999999987

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.80  E-value=3.9e-19  Score=104.65  Aligned_cols=43  Identities=30%  Similarity=0.598  Sum_probs=32.2

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++|+|||+||++|+++.|.++++++.+++. .+.++++|+++++
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~   61 (101)
T cd02994          19 WMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEP   61 (101)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCH
Confidence            689999999999999999999999876532 2444444444433

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.80  E-value=7.3e-19  Score=116.34  Aligned_cols=101  Identities=21%  Similarity=0.321  Sum_probs=86.2

Q ss_pred             EEEEEEc---CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee------
Q psy3452           3 YSILFYS---PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI------   69 (116)
Q Consensus         3 v~v~F~a---~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f------   69 (116)
                      .++.|++   +||++|+.+.|.++++++.+++. .+.++.+|.+++++++++|+|+++||+++|++|    ..|      
T Consensus        22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~-~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~  100 (215)
T TIGR02187        22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKL-KLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAG  100 (215)
T ss_pred             EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc-eEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCH
Confidence            4666888   99999999999999999998532 366777777799999999999999999999885    112      


Q ss_pred             --------------------------------------------------------------ceeeEEEEeccCccchhh
Q psy3452          70 --------------------------------------------------------------IRLALAAIDCTEHGPLCK   87 (116)
Q Consensus        70 --------------------------------------------------------------~~~~~~~v~~~~~~~~~~   87 (116)
                                                                                    +.+.+..+|.+.+.++++
T Consensus       101 ~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~  180 (215)
T TIGR02187       101 YEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE  180 (215)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH
Confidence                                                                          467778899999999999


Q ss_pred             hcCCCCCCEEEEecCCc
Q psy3452          88 EYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        88 ~~~v~~~Pt~~~~~~g~  104 (116)
                      +|+|.++||++++++|.
T Consensus       181 ~~~V~~vPtl~i~~~~~  197 (215)
T TIGR02187       181 KYGVMSVPKIVINKGVE  197 (215)
T ss_pred             HhCCccCCEEEEecCCE
Confidence            99999999999997764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.79  E-value=8.3e-19  Score=104.39  Aligned_cols=78  Identities=40%  Similarity=0.798  Sum_probs=60.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|.|||+||++|+++.|.++++++.+++  .+.++.+|++++                                   +
T Consensus        20 ~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~-----------------------------------~   62 (109)
T cd03002          20 TTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDED-----------------------------------K   62 (109)
T ss_pred             eEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCcc-----------------------------------c
Confidence            689999999999999999999999998875  444555444431                                   1


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcc---cCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNK---QSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~---~~~~~y~g~~~  116 (116)
                      +.+++++|+|+++||+++|++|+.   .....|.|..+
T Consensus        63 ~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~  100 (109)
T cd03002          63 NKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERS  100 (109)
T ss_pred             cHHHHHHcCCCcCCEEEEEeCCCcccccccccccCccC
Confidence            567888899999999999988762   24577888653

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG0191|consensus

Probab=99.79  E-value=6.6e-19  Score=125.20  Aligned_cols=111  Identities=36%  Similarity=0.674  Sum_probs=98.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce---------------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT---------------   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~---------------   66 (116)
                      .++|+||+|||++|+++.|.+.++++.+.+  .+.+..+||+++.+++++|++.++||+.+|+++               
T Consensus        49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~  126 (383)
T KOG0191|consen   49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESL  126 (383)
T ss_pred             ceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHH
Confidence            579999999999999999999999999998  799999999999999999999999999999887               


Q ss_pred             ----------------------------------------eee-------------------------ceeeEEEEeccC
Q psy3452          67 ----------------------------------------IMI-------------------------IRLALAAIDCTE   81 (116)
Q Consensus        67 ----------------------------------------v~f-------------------------~~~~~~~v~~~~   81 (116)
                                                              +.|                         ..+..+.++++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~  206 (383)
T KOG0191|consen  127 AEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV  206 (383)
T ss_pred             HHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch
Confidence                                                    111                         467888889889


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +..++++++|+++||+.+|++|.+ ....|.|.+
T Consensus       207 ~~~~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R  239 (383)
T KOG0191|consen  207 HKSLASRLEVRGYPTLKLFPPGEE-DIYYYSGLR  239 (383)
T ss_pred             HHHHhhhhcccCCceEEEecCCCc-ccccccccc
Confidence            999999999999999999998877 445565544

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.79  E-value=4.5e-19  Score=103.45  Aligned_cols=62  Identities=19%  Similarity=0.371  Sum_probs=46.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++|+||++||++|+++.|.++++++.+++  .+.++++|+++++.+++++++.++||++++++
T Consensus        14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~   75 (96)
T cd02956          14 PVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAA   75 (96)
T ss_pred             eEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeC
Confidence            789999999999999999999999999876  46666666666555555555555555555444

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.78  E-value=1.2e-18  Score=102.52  Aligned_cols=75  Identities=32%  Similarity=0.716  Sum_probs=53.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      +++|+|||+||++|+++.|.++++++.+++.. .+                                     .++.+|++
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~-------------------------------------~~~~vd~~   60 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSV-------------------------------------KIAKVDCT   60 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcE-------------------------------------EEEEEECC
Confidence            47999999999999999999999999987521 34                                     44555555


Q ss_pred             CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+..++++|+|+++||+++|++|+.  ...|.|..
T Consensus        61 ~~~~~~~~~~v~~~Pt~~~~~~g~~--~~~~~G~~   93 (102)
T cd03005          61 QHRELCSEFQVRGYPTLLLFKDGEK--VDKYKGTR   93 (102)
T ss_pred             CChhhHhhcCCCcCCEEEEEeCCCe--eeEeeCCC
Confidence            5556666777777777777766653  24555543

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.78  E-value=2.4e-18  Score=102.82  Aligned_cols=75  Identities=24%  Similarity=0.541  Sum_probs=57.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|.||++||++|+++.|.++++++.+++. .+.+                                     +.++++
T Consensus        22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~-------------------------------------~~vd~d   63 (109)
T cd02993          22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKV-------------------------------------AKFNAD   63 (109)
T ss_pred             CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEE-------------------------------------EEEECC
Confidence            37899999999999999999999999998752 2444                                     444544


Q ss_pred             C-ccchhh-hcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          81 E-HGPLCK-EYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        81 ~-~~~~~~-~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      . +..+++ .++|+++||+++|++|+. ....|+|+
T Consensus        64 ~~~~~~~~~~~~v~~~Pti~~f~~~~~-~~~~y~g~   98 (109)
T cd02993          64 GEQREFAKEELQLKSFPTILFFPKNSR-QPIKYPSE   98 (109)
T ss_pred             ccchhhHHhhcCCCcCCEEEEEcCCCC-CceeccCC
Confidence            4 345555 488899999998877754 35778884

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.78  E-value=1e-18  Score=103.30  Aligned_cols=63  Identities=24%  Similarity=0.292  Sum_probs=51.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.+++. .+.++.+|++ +.+++++|+++++||++++++|
T Consensus        19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g   81 (102)
T cd02948          19 LTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG   81 (102)
T ss_pred             eEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence            6899999999999999999999999998753 3677777777 5566777777777777777664

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG0190|consensus

Probab=99.78  E-value=4.7e-19  Score=127.47  Aligned_cols=76  Identities=38%  Similarity=0.708  Sum_probs=58.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      .++|.||||||+||++++|.+++.++.+...+                                    +.+..++|||.+
T Consensus        44 ~vlVeFYAPWCghck~LaPey~kAA~~Lke~~------------------------------------s~i~LakVDat~   87 (493)
T KOG0190|consen   44 FVLVEFYAPWCGHCKALAPEYEKAATELKEEG------------------------------------SPVKLAKVDATE   87 (493)
T ss_pred             eEEEEEEchhhhhhhhhCcHHHHHHHHhhccC------------------------------------CCceeEEeecch
Confidence            57899999999999999999999999998753                                    234456666666


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.++|.+|+|++|||+.+|++|..  +..|+|.+
T Consensus        88 ~~~~~~~y~v~gyPTlkiFrnG~~--~~~Y~G~r  119 (493)
T KOG0190|consen   88 ESDLASKYEVRGYPTLKIFRNGRS--AQDYNGPR  119 (493)
T ss_pred             hhhhHhhhcCCCCCeEEEEecCCc--ceeccCcc
Confidence            666777777777777777777765  56677654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=5.7e-19  Score=119.41  Aligned_cols=64  Identities=25%  Similarity=0.469  Sum_probs=58.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .||+|+||+|||++|+.+.|.++++..++++  .++++++||+.++.++..|+|+++||++.|.+|
T Consensus        44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dG  107 (304)
T COG3118          44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDG  107 (304)
T ss_pred             CCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCeEEEeeCC
Confidence            3899999999999999999999999999998  788988888888888888888888888888776

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.77  E-value=3.6e-18  Score=102.88  Aligned_cols=78  Identities=31%  Similarity=0.659  Sum_probs=59.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|+||++||++|+.+.|.++++++.+++..                                    +.+.++.+||+
T Consensus        20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~------------------------------------~~v~~~~vd~~   63 (114)
T cd02992          20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWR------------------------------------PVVRVAAVDCA   63 (114)
T ss_pred             CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcC------------------------------------CceEEEEEecc
Confidence            379999999999999999999999999886422                                    12344555553


Q ss_pred             --CccchhhhcCCCCCCEEEEecCCccc--CCcCCCCC
Q psy3452          81 --EHGPLCKEYDIKGYPTFQYFHYFNKQ--SPSPYHND  114 (116)
Q Consensus        81 --~~~~~~~~~~v~~~Pt~~~~~~g~~~--~~~~y~g~  114 (116)
                        .+.+++++|+|+++||+++|++|.+.  .+..|+|.
T Consensus        64 ~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~  101 (114)
T cd02992          64 DEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGP  101 (114)
T ss_pred             chhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccCC
Confidence              35678889999999999999888644  34677764

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.77  E-value=3.6e-18  Score=100.56  Aligned_cols=74  Identities=36%  Similarity=0.724  Sum_probs=56.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|.||++||++|+++.|.+.++++.+++  .+                                     .++.+|++.
T Consensus        20 ~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~-------------------------------------~~~~id~~~   60 (103)
T cd03001          20 VWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IV-------------------------------------KVGAVDADV   60 (103)
T ss_pred             cEEEEEECCCCHHHHHHhHHHHHHHHHhcC--Cc-------------------------------------eEEEEECcc
Confidence            589999999999999999999999998864  33                                     345556666


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+++++|+|+++||+++|++|+. ....|.|..
T Consensus        61 ~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~~g~~   93 (103)
T cd03001          61 HQSLAQQYGVRGFPTIKVFGAGKN-SPQDYQGGR   93 (103)
T ss_pred             hHHHHHHCCCCccCEEEEECCCCc-ceeecCCCC
Confidence            667777788888888888877632 356777765

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.77  E-value=1.8e-18  Score=102.43  Aligned_cols=64  Identities=31%  Similarity=0.657  Sum_probs=43.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      .+++|.||++||++|+++.|.++++++.+++.+ .+.+..+|+++.+.++++++++++||+++++
T Consensus        16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~   80 (104)
T cd03000          16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK   80 (104)
T ss_pred             CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence            368999999999999999999999999986532 3555555555444444444444444444443

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.77  E-value=1.5e-18  Score=107.50  Aligned_cols=64  Identities=17%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE-EcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH-HLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~~   66 (116)
                      .+|+|+|||+||++|+.+.|.++++++++++  .+.++++|+++++++++.|+|++.||++ ||++|
T Consensus        24 ~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g   88 (142)
T PLN00410         24 RLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK   88 (142)
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence            3799999999999999999999999999987  6888999999999999999999776666 88886

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.76  E-value=6.9e-18  Score=99.38  Aligned_cols=77  Identities=34%  Similarity=0.618  Sum_probs=60.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+||++||++|+.+.|.++++++.+++...                                     +.++.+|+++
T Consensus        20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~id~~~   62 (104)
T cd02995          20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDN-------------------------------------VVIAKMDATA   62 (104)
T ss_pred             cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCC-------------------------------------EEEEEEeCcc
Confidence            689999999999999999999999999875322                                     4455566655


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      + +++..+++.++||+++|++|++.....|.|..+
T Consensus        63 ~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~   96 (104)
T cd02995          63 N-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRT   96 (104)
T ss_pred             h-hhhhhccCCCCCEEEEEcCCCcCCceEccCCcC
Confidence            4 466678888999999998887445677888754

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>KOG4277|consensus

Probab=99.76  E-value=3.7e-19  Score=120.78  Aligned_cols=102  Identities=26%  Similarity=0.448  Sum_probs=84.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCce--eee---------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT--IMI---------   69 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~--v~f---------   69 (116)
                      .|+|+||||||+||+++.|.|.++...+++.+ .+.+.++|++..+.++++++++++||+.||+++  ++|         
T Consensus        45 iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~i  124 (468)
T KOG4277|consen   45 IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAI  124 (468)
T ss_pred             eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccHHHH
Confidence            58999999999999999999999999998887 899999999999999999999999999999999  333         


Q ss_pred             ---ce-eeEEEEec-cCccchhhhcCCCCCCEEEEecCC
Q psy3452          70 ---IR-LALAAIDC-TEHGPLCKEYDIKGYPTFQYFHYF  103 (116)
Q Consensus        70 ---~~-~~~~~v~~-~~~~~~~~~~~v~~~Pt~~~~~~g  103 (116)
                         .. +.-+-+.. .++......++.+..|.++++.-|
T Consensus       125 ieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtg  163 (468)
T KOG4277|consen  125 IEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTG  163 (468)
T ss_pred             HHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCC
Confidence               22 22222222 245566667889999999999655

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.76  E-value=3.2e-18  Score=107.55  Aligned_cols=64  Identities=13%  Similarity=0.269  Sum_probs=56.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccc------cceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG------YPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~------~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.+++. ++.++++|++++++++++++|++      +||+++|++|
T Consensus        49 ~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~G  118 (152)
T cd02962          49 TWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGG  118 (152)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECC
Confidence            6899999999999999999999999998753 48899999999988888888877      7888887775

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.75  E-value=4.3e-18  Score=99.97  Aligned_cols=63  Identities=38%  Similarity=0.653  Sum_probs=51.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+.+.|.++++++.+++  ++.++.+|+++++.+++++++.++||++++++|
T Consensus        19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g   81 (103)
T PF00085_consen   19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG   81 (103)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred             CEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence            689999999999999999999999999987  577777777766666666666666666666654

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.75  E-value=1.5e-17  Score=97.99  Aligned_cols=78  Identities=32%  Similarity=0.650  Sum_probs=59.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      ++++|.||++||++|+++.|.++++++.++...+                                     +.++.+|++
T Consensus        19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~id~~   61 (105)
T cd02998          19 KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDD-------------------------------------VVIAKVDAD   61 (105)
T ss_pred             CcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCC-------------------------------------EEEEEEECC
Confidence            3689999999999999999999999999873223                                     344556666


Q ss_pred             C-ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          81 E-HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        81 ~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      . +.+++++++|+++||+++|++|++ ....|.|.++
T Consensus        62 ~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~~g~~~   97 (105)
T cd02998          62 EANKDLAKKYGVSGFPTLKFFPKGST-EPVKYEGGRD   97 (105)
T ss_pred             CcchhhHHhCCCCCcCEEEEEeCCCC-CccccCCccC
Confidence            6 677788888888888888877643 3567777653

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>KOG0190|consensus

Probab=99.75  E-value=4e-18  Score=122.70  Aligned_cols=76  Identities=34%  Similarity=0.598  Sum_probs=63.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      -|+|.||||||+||+++.|.++++++.+++..++.++++|.+.|+                                   
T Consensus       386 dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd-----------------------------------  430 (493)
T KOG0190|consen  386 DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND-----------------------------------  430 (493)
T ss_pred             ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc-----------------------------------
Confidence            489999999999999999999999999998666777666666654                                   


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                        --  ...+++||||++++.|.+..++.|+|+.+
T Consensus       431 --~~--~~~~~~fPTI~~~pag~k~~pv~y~g~R~  461 (493)
T KOG0190|consen  431 --VP--SLKVDGFPTILFFPAGHKSNPVIYNGDRT  461 (493)
T ss_pred             --Cc--cccccccceEEEecCCCCCCCcccCCCcc
Confidence              11  34567799999999999888999999864

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.74  E-value=4.5e-18  Score=102.30  Aligned_cols=62  Identities=18%  Similarity=0.156  Sum_probs=57.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+.+.|.+++++++++   .+.++++|.++++++++++++..+||+++|++|
T Consensus        24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G   85 (113)
T cd02989          24 RVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNG   85 (113)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEEEEEECC
Confidence            68999999999999999999999999986   479999999999999999999999999999886

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.74  E-value=1.6e-17  Score=97.41  Aligned_cols=76  Identities=34%  Similarity=0.640  Sum_probs=57.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|.||++||++|+.+.+.++++++.+++.+                                     ++.++.+|++
T Consensus        14 ~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~d~~   56 (102)
T TIGR01126        14 KDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-------------------------------------DIVLAKVDAT   56 (102)
T ss_pred             CcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-------------------------------------ceEEEEEEcc
Confidence            368999999999999999999999999886532                                     2445566666


Q ss_pred             CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+..++++|+|+++|++++|++|+.  ...|.|.+
T Consensus        57 ~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~g~~   89 (102)
T TIGR01126        57 AEKDLASRFGVSGFPTIKFFPKGKK--PVDYEGGR   89 (102)
T ss_pred             chHHHHHhCCCCcCCEEEEecCCCc--ceeecCCC
Confidence            6677777777777888877777654  45666654

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.74  E-value=4.5e-18  Score=102.23  Aligned_cols=61  Identities=23%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+.+.|.++++++.++   .+.++++|++++ .++++++++++||+++|++|
T Consensus        26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G   86 (113)
T cd02957          26 RVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNG   86 (113)
T ss_pred             EEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECC
Confidence            68999999999999999999999999986   477888888877 78888888888888888775

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK09381 trxA thioredoxin; Provisional

Probab=99.74  E-value=1e-17  Score=99.86  Aligned_cols=63  Identities=22%  Similarity=0.398  Sum_probs=53.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+.+.|.++++++.+++  .+.++.+|++.++.++++++++.+||++++++|
T Consensus        23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   85 (109)
T PRK09381         23 AILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG   85 (109)
T ss_pred             eEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCC
Confidence            689999999999999999999999999986  578888888877777777777777777777654

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.73  E-value=8.1e-18  Score=100.17  Aligned_cols=63  Identities=6%  Similarity=0.045  Sum_probs=54.0

Q ss_pred             eEEEEEEcCC--CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPG--CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~w--C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++|  |++|+.+.|.++++++++++  .+.++++|++++++++++|+|+++||+++|++|
T Consensus        29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG   93 (111)
T cd02965          29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALLFFRDG   93 (111)
T ss_pred             CEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence            4789999997  99999999999999999987  677888888888877777777777777777765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.73  E-value=1.6e-17  Score=96.86  Aligned_cols=64  Identities=19%  Similarity=0.348  Sum_probs=54.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+++.|.++++++.+..  .+.++++|.++.++++++|+++++||+++|++|
T Consensus        15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g   78 (97)
T cd02984          15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNG   78 (97)
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence            3789999999999999999999999999743  688888888888777788888888888777764

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.73  E-value=8.7e-18  Score=111.48  Aligned_cols=63  Identities=35%  Similarity=0.640  Sum_probs=57.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+++.|.++++++.+++  .+.+.++|++++++++++++|+++||+++|++|
T Consensus        54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G  116 (224)
T PTZ00443         54 PWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKGYPTLLLFDKG  116 (224)
T ss_pred             CEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCcCCEEEEEECC
Confidence            689999999999999999999999999986  688889999988888888888888888888875

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.73  E-value=7.2e-18  Score=102.10  Aligned_cols=62  Identities=6%  Similarity=0.079  Sum_probs=42.0

Q ss_pred             eEEEEEEcCCCHH--HH--hhhHHHHHHHHHh--ccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGY--CK--KAKPEYVKAAEVL--KDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~--C~--~~~~~~~~~~~~~--~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++++||++||++  |+  .+.|.+.+++.++  ++  .+.++++|++++++++++|+|+++||+++|++
T Consensus        29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~   96 (120)
T cd03065          29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKD   96 (120)
T ss_pred             eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCCccccEEEEEEC
Confidence            6899999999987  99  7788999998887  54  45555555555555444444444444444444

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.72  E-value=5e-17  Score=96.14  Aligned_cols=78  Identities=23%  Similarity=0.289  Sum_probs=57.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .+++|.||++||++|+.+.+.+   .++++.+++  .+.++.+|+++++.                              
T Consensus        12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~------------------------------   59 (104)
T cd02953          12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDP------------------------------   59 (104)
T ss_pred             CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCH------------------------------
Confidence            4789999999999999999988   678888875  58888887765431                              


Q ss_pred             eccCccchhhhcCCCCCCEEEEecC--CcccCCcCCCCCC
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHY--FNKQSPSPYHNDY  115 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~y~g~~  115 (116)
                         ...+++++|+|+++||+++|++  |+.  ...+.|..
T Consensus        60 ---~~~~~~~~~~i~~~Pti~~~~~~~g~~--~~~~~G~~   94 (104)
T cd02953          60 ---EITALLKRFGVFGPPTYLFYGPGGEPE--PLRLPGFL   94 (104)
T ss_pred             ---HHHHHHHHcCCCCCCEEEEECCCCCCC--Cccccccc
Confidence               1346777888888888888874  333  35555543

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PRK10996 thioredoxin 2; Provisional

Probab=99.72  E-value=3e-17  Score=102.02  Aligned_cols=63  Identities=22%  Similarity=0.404  Sum_probs=52.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+.+.|.+.++++.+.+  .+.++++|++++++++++++|+++||+++|++|
T Consensus        54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G  116 (139)
T PRK10996         54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIMIFKNG  116 (139)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECC
Confidence            689999999999999999999999998876  678888888777777777777777777777654

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.72  E-value=3e-17  Score=96.69  Aligned_cols=76  Identities=47%  Similarity=0.878  Sum_probs=53.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+||++||++|+++.|.++++++.+++...+.++.+|++..                                   .
T Consensus        19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------------------------------~   63 (104)
T cd02997          19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-----------------------------------E   63 (104)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-----------------------------------c
Confidence            58999999999999999999999999887432455555555441                                   0


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      +..++++++|+++||++++++|+.+  ..|.|.
T Consensus        64 ~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~~g~   94 (104)
T cd02997          64 HDALKEEYNVKGFPTFKYFENGKFV--EKYEGE   94 (104)
T ss_pred             cHHHHHhCCCccccEEEEEeCCCee--EEeCCC
Confidence            4556667777777777777666542  455554

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.72  E-value=2.6e-17  Score=102.74  Aligned_cols=90  Identities=13%  Similarity=0.112  Sum_probs=65.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccC------cceEEEEEeCCCccccc----ccCCccccceEEEcCceeeec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDN------HKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMII   70 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~   70 (116)
                      .+++|+|||+||++|++++|.+.++.+.++++      .++.++.|+.+++.+..    ++.++.. |            
T Consensus        26 k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~-~------------   92 (146)
T cd03008          26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKW-L------------   92 (146)
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCc-e------------
Confidence            47999999999999999999999998877643      15889999888765433    3333321 1            


Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                         ...+.......++++|++.++||+++++..+++
T Consensus        93 ---~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~V  125 (146)
T cd03008          93 ---FLPFEDEFRRELEAQFSVEELPTVVVLKPDGDV  125 (146)
T ss_pred             ---eecccchHHHHHHHHcCCCCCCEEEEECCCCcE
Confidence               111122234579999999999999999766654

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.71  E-value=2.5e-17  Score=98.71  Aligned_cols=83  Identities=20%  Similarity=0.285  Sum_probs=63.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe---CCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID---CTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd---~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .+++|.||++||++|+++.|.++++.+.+++  .+.++.+.   .++..++++++++..+|++.                
T Consensus        22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~----------------   83 (114)
T cd02967          22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYVL----------------   83 (114)
T ss_pred             CeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe----------------
Confidence            3789999999999999999999999888765  45555442   22334567778887777431                


Q ss_pred             eccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                          +.++.++|+++..|+++++++.++
T Consensus        84 ----~~~~~~~~~~~~~P~~~vid~~G~  107 (114)
T cd02967          84 ----SAELGMAYQVSKLPYAVLLDEAGV  107 (114)
T ss_pred             ----cHHHHhhcCCCCcCeEEEECCCCe
Confidence                235788999999999999976655

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>KOG0908|consensus

Probab=99.70  E-value=1.6e-17  Score=109.76  Aligned_cols=65  Identities=18%  Similarity=0.325  Sum_probs=61.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIM   68 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~   68 (116)
                      +.++|+|+|+||++|+.+.|.+..++.+|+   ...|++||+++.+.+++.+||...||+++|++++.
T Consensus        22 k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k   86 (288)
T KOG0908|consen   22 KLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK   86 (288)
T ss_pred             eEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence            368999999999999999999999999998   58999999999999999999999999999999833

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.70  E-value=2.3e-16  Score=91.79  Aligned_cols=76  Identities=38%  Similarity=0.752  Sum_probs=57.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|.||++||++|+++.|.++++++.++..                                     ..+.++.++++.
T Consensus        17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~v~~~~   59 (101)
T cd02961          17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGD-------------------------------------GKVVVAKVDCTA   59 (101)
T ss_pred             cEEEEEECCCCHHHHhhhHHHHHHHHHhccC-------------------------------------CceEEEEeeccc
Confidence            5899999999999999999999999988421                                     134555666666


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +..++++|+|+++||++++++++ .....|.|..
T Consensus        60 ~~~~~~~~~i~~~Pt~~~~~~~~-~~~~~~~g~~   92 (101)
T cd02961          60 NNDLCSEYGVRGYPTIKLFPNGS-KEPVKYEGPR   92 (101)
T ss_pred             hHHHHHhCCCCCCCEEEEEcCCC-cccccCCCCc
Confidence            67777788888888888887663 2356666654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.69  E-value=1.2e-16  Score=93.45  Aligned_cols=63  Identities=27%  Similarity=0.483  Sum_probs=53.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++++.||++||+.|+.+.|.++++++.+++  .+.+..+|+++++++++++++.++||+++++++
T Consensus        15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g   77 (97)
T cd02949          15 LILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK   77 (97)
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECC
Confidence            689999999999999999999999999876  688888888877777777777777777777653

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.69  E-value=8.9e-17  Score=93.50  Aligned_cols=92  Identities=23%  Similarity=0.338  Sum_probs=64.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccc-cceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG-YPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      ++++|+|||+||++|++..|.+.++.+.+++...+.++.++.+++.+..+++--+. .|             .....++.
T Consensus         2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~-------------~~~~~~~~   68 (95)
T PF13905_consen    2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFP-------------WYNVPFDD   68 (95)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTS-------------SEEEETTT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCC-------------ceEEeeCc
Confidence            47999999999999999999999999999943378888888887643333221111 01             11122333


Q ss_pred             cCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      .....+.+.|+|+++|++++++++++
T Consensus        69 ~~~~~l~~~~~i~~iP~~~lld~~G~   94 (95)
T PF13905_consen   69 DNNSELLKKYGINGIPTLVLLDPDGK   94 (95)
T ss_dssp             HHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred             chHHHHHHHCCCCcCCEEEEECCCCC
Confidence            45678999999999999999977665

...

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.69  E-value=1.4e-16  Score=99.36  Aligned_cols=62  Identities=23%  Similarity=0.448  Sum_probs=53.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc--ccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH--GPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~   64 (116)
                      .+++|+|||+||++|+.+.|.++++++.+.+  .+.++.++++.+  ..++++|++.++||+++|+
T Consensus        21 k~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~   84 (142)
T cd02950          21 KPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLD   84 (142)
T ss_pred             CEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEEC
Confidence            3789999999999999999999999999976  566777776654  4778899999999999996

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PTZ00051 thioredoxin; Provisional

Probab=99.69  E-value=1.1e-16  Score=93.62  Aligned_cols=62  Identities=24%  Similarity=0.486  Sum_probs=49.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+++.|.++++++.++   .+.+..+|++++..++++++++++||++++++|
T Consensus        20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   81 (98)
T PTZ00051         20 LVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKVFKNG   81 (98)
T ss_pred             eEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence            68999999999999999999999999775   477777777776666666676666666666553

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.68  E-value=1e-16  Score=103.03  Aligned_cols=61  Identities=16%  Similarity=0.243  Sum_probs=55.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|+|+||++||++|+.+.|.++++++.++   .+.|+++|+++. .++++|++..+||+++|++|
T Consensus        85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G  145 (175)
T cd02987          85 TVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-GASDEFDTDALPALLVYKGG  145 (175)
T ss_pred             EEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-hhHHhCCCCCCCEEEEEECC
Confidence            79999999999999999999999999986   589999999887 78888999999999988886

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.68  E-value=1.8e-16  Score=95.16  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=56.3

Q ss_pred             eEEEEEEc--CCCH---HHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           2 FYSILFYS--PGCG---YCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         2 ~v~v~F~a--~wC~---~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+||.|||  |||+   +|++++|.+.+.+.      .+.+++|||+...+                             
T Consensus        20 ~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~-----------------------------   64 (116)
T cd03007          20 YSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGE-----------------------------   64 (116)
T ss_pred             cEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccc-----------------------------
Confidence            58999999  8888   77777766655332      35555555543321                             


Q ss_pred             EeccCccchhhhcCCC--CCCEEEEecCCcccCCcCCCCC-CC
Q psy3452          77 IDCTEHGPLCKEYDIK--GYPTFQYFHYFNKQSPSPYHND-YT  116 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~y~g~-~~  116 (116)
                         .++.+++++|+|+  +|||+.+|++|+...++.|+|. .+
T Consensus        65 ---~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~  104 (116)
T cd03007          65 ---KLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVT  104 (116)
T ss_pred             ---hhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCccc
Confidence               3467899999999  9999999999865457899995 54

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR01068 thioredoxin thioredoxin

Probab=99.68  E-value=2e-16  Score=92.45  Aligned_cols=63  Identities=24%  Similarity=0.427  Sum_probs=53.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|.||++||++|+.+.|.++++++.+++  .+.++.+|+++++.+++++++..+||+++++++
T Consensus        16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g   78 (101)
T TIGR01068        16 PVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG   78 (101)
T ss_pred             cEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence            689999999999999999999999988875  588888888887777777777777777777654

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.67  E-value=1.3e-16  Score=95.97  Aligned_cols=62  Identities=24%  Similarity=0.361  Sum_probs=54.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++|.||++||++|+.+.|.++++++.+ +  .+.+..+|.+++++++++|+++++||+++++++
T Consensus        24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          24 DLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             EEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCC
Confidence            4788999999999999999999999886 3  688999998888888888888888888888764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.67  E-value=2.5e-16  Score=114.37  Aligned_cols=65  Identities=40%  Similarity=0.806  Sum_probs=52.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+++.|.++++++.+.+.. ++.++++||+++.++++++++.++||+++|+++
T Consensus        51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  116 (477)
T PTZ00102         51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKG  116 (477)
T ss_pred             cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECC
Confidence            58999999999999999999999998886532 577777777777777777777777777776664

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.66  E-value=7.4e-16  Score=93.94  Aligned_cols=87  Identities=20%  Similarity=0.397  Sum_probs=62.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHH---HHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYV---KAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .+++|.||++||++|+++.|.+.   ++.+.+++  .+.++.+|.+++..... +..                       
T Consensus        15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~-~~~-----------------------   68 (125)
T cd02951          15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTD-FDG-----------------------   68 (125)
T ss_pred             CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeec-cCC-----------------------
Confidence            37899999999999999999884   56666655  68889999887654321 110                       


Q ss_pred             eccCccchhhhcCCCCCCEEEEecCC-cccCCcCCCCC
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHYF-NKQSPSPYHND  114 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~y~g~  114 (116)
                      ...+..+++++|+|+++||+++++++ +++ ...+.|.
T Consensus        69 ~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~-~~~~~G~  105 (125)
T cd02951          69 EALSEKELARKYRVRFTPTVIFLDPEGGKE-IARLPGY  105 (125)
T ss_pred             CCccHHHHHHHcCCccccEEEEEcCCCCce-eEEecCC
Confidence            11356788999999999999999775 443 2344443

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.66  E-value=4.5e-16  Score=112.27  Aligned_cols=64  Identities=42%  Similarity=0.773  Sum_probs=49.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++|+|||+||++|+++.|.+.++++.+.+.. ++.++.+||+++.++++++++.++||+++|++
T Consensus        20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~   84 (462)
T TIGR01130        20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN   84 (462)
T ss_pred             CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence            58999999999999999999999999887542 46666666666666666666666666666655

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PLN02309 5'-adenylylsulfate reductase

Probab=99.66  E-value=5.7e-16  Score=111.68  Aligned_cols=74  Identities=23%  Similarity=0.494  Sum_probs=56.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      ++++|+|||+||++|+++.|.++++++.+.+. .+.                                     ++.+|++
T Consensus       366 k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~-------------------------------------f~kVD~d  407 (457)
T PLN02309        366 EPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVK-------------------------------------VAKFRAD  407 (457)
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeE-------------------------------------EEEEECC
Confidence            36899999999999999999999999998753 244                                     4555555


Q ss_pred             -Cccchhh-hcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452          81 -EHGPLCK-EYDIKGYPTFQYFHYFNKQSPSPYHN  113 (116)
Q Consensus        81 -~~~~~~~-~~~v~~~Pt~~~~~~g~~~~~~~y~g  113 (116)
                       .+.++++ +|+|+++||+++|++|.+ .++.|.|
T Consensus       408 ~~~~~la~~~~~I~~~PTil~f~~g~~-~~v~Y~~  441 (457)
T PLN02309        408 GDQKEFAKQELQLGSFPTILLFPKNSS-RPIKYPS  441 (457)
T ss_pred             CcchHHHHhhCCCceeeEEEEEeCCCC-CeeecCC
Confidence             4455665 588888888888877754 3677764

>PTZ00102 disulphide isomerase; Provisional

Probab=99.65  E-value=6.7e-16  Score=112.15  Aligned_cols=63  Identities=27%  Similarity=0.508  Sum_probs=43.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      +++|+|||+||++|+++.|.++++++.+++.+.+.++++|++.++..+++++++++||+++|+
T Consensus       377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~  439 (477)
T PTZ00102        377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVK  439 (477)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEE
Confidence            689999999999999999999999999876434555555555554444444444433333333

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.65  E-value=1.1e-15  Score=110.40  Aligned_cols=73  Identities=22%  Similarity=0.528  Sum_probs=55.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +|+|+|||+||++|+.+.|.++++++++++. .+.+                                     +.++++.
T Consensus       373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~-------------------------------------~kVdvD~  414 (463)
T TIGR00424       373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKV-------------------------------------AKFRADG  414 (463)
T ss_pred             eEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEE-------------------------------------EEEECCC
Confidence            6899999999999999999999999998763 1444                                     4444443


Q ss_pred             cc-ch-hhhcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452          82 HG-PL-CKEYDIKGYPTFQYFHYFNKQSPSPYHN  113 (116)
Q Consensus        82 ~~-~~-~~~~~v~~~Pt~~~~~~g~~~~~~~y~g  113 (116)
                      +. .+ +++|+|+++||+++|++|+. .++.|.|
T Consensus       415 ~~~~~~~~~~~I~~~PTii~Fk~g~~-~~~~Y~~  447 (463)
T TIGR00424       415 DQKEFAKQELQLGSFPTILFFPKHSS-RPIKYPS  447 (463)
T ss_pred             CccHHHHHHcCCCccceEEEEECCCC-CceeCCC
Confidence            32 33 35788889999999988753 3577864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.64  E-value=7.5e-16  Score=94.79  Aligned_cols=89  Identities=16%  Similarity=0.239  Sum_probs=62.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccC-cceEEEEEeCCCcccc----cccCCccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDN-HKVALAAIDCTEHGPL----CKEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      .+++|+||++||++|++++|.++++.+.+++. ..+.++.++.+.+.+.    .++++  ..+               ..
T Consensus        18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~--~~~---------------~~   80 (132)
T cd02964          18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP--PWL---------------AV   80 (132)
T ss_pred             CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC--CeE---------------ee
Confidence            47899999999999999999999999988764 2577777777765432    22332  111               01


Q ss_pred             EEec-cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          76 AIDC-TEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .... .....+.+.|+|.++||++++++++++
T Consensus        81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~i  112 (132)
T cd02964          81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDV  112 (132)
T ss_pred             ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            1111 234567888999999999999765554

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.63  E-value=1.2e-15  Score=92.21  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=38.6

Q ss_pred             eEEEEEEc-------CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           2 FYSILFYS-------PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         2 ~v~v~F~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      +++|+|||       +||++|+.+.|.++++++++++  .+.++++|+++.+
T Consensus        23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~   72 (119)
T cd02952          23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRP   72 (119)
T ss_pred             eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcc
Confidence            78999999       9999999999999999999985  5888999887653

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.62  E-value=1.6e-15  Score=92.59  Aligned_cols=92  Identities=13%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++||++|+++.|.++++.+.+    .+.++.++.+...+    ..+++++..                  ..
T Consensus        26 k~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~------------------~~   83 (127)
T cd03010          26 KPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPY------------------AA   83 (127)
T ss_pred             CEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCC------------------ce
Confidence            37899999999999999999999998775    37788887654432    223333321                  22


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +..+.+..+++.|++.+.|+.+++++++++ ...+.|..
T Consensus        84 ~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v-~~~~~G~~  121 (127)
T cd03010          84 VGFDPDGRVGIDLGVYGVPETFLIDGDGII-RYKHVGPL  121 (127)
T ss_pred             EEECCcchHHHhcCCCCCCeEEEECCCceE-EEEEeccC
Confidence            334567889999999999988888654443 24555543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.62  E-value=1.5e-15  Score=93.15  Aligned_cols=92  Identities=17%  Similarity=0.289  Sum_probs=62.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEe-
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAID-   78 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~-   78 (116)
                      .+++|+||++||++|+++.|.+.++.+++.+.+ .+.++.++.+.+.+..+++- ...|..          .   .... 
T Consensus        19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~-~~~~~~----------~---~~~~~   84 (131)
T cd03009          19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYF-SKMPWL----------A---VPFSD   84 (131)
T ss_pred             cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HcCCee----------E---cccCC
Confidence            479999999999999999999999998887542 57777777766543222221 111100          0   1111 


Q ss_pred             ccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          79 CTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        79 ~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+.+..++++|+|.++|+++++++++++
T Consensus        85 ~~~~~~~~~~~~v~~~P~~~lid~~G~i  112 (131)
T cd03009          85 RERRSRLNRTFKIEGIPTLIILDADGEV  112 (131)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            1344678999999999999999755554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.60  E-value=3.2e-15  Score=96.89  Aligned_cols=91  Identities=11%  Similarity=0.097  Sum_probs=62.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++||++|++++|.+.++.+.     .+.++.++.+++.+.+    ++++.. +|                 .
T Consensus        69 k~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~-~~-----------------~  125 (185)
T PRK15412         69 KPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNP-YA-----------------L  125 (185)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCC-Cc-----------------e
Confidence            3789999999999999999999988642     4677788766554322    333322 11                 1


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +-.+.+..+.+.|++.+.|+.+++++.+++ ...+.|++
T Consensus       126 ~~~D~~~~~~~~~gv~~~P~t~vid~~G~i-~~~~~G~~  163 (185)
T PRK15412        126 SLFDGDGMLGLDLGVYGAPETFLIDGNGII-RYRHAGDL  163 (185)
T ss_pred             EEEcCCccHHHhcCCCcCCeEEEECCCceE-EEEEecCC
Confidence            122556778899999999999999655554 24455554

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.58  E-value=8.1e-15  Score=82.92  Aligned_cols=58  Identities=31%  Similarity=0.434  Sum_probs=52.1

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      .+..||++||++|+.+.|.++++++.++.  .+.+..+|.+++++++++++++++||+++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~   59 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI   59 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence            46679999999999999999999999875  68899999999998999999999999876

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.56  E-value=7.7e-15  Score=95.56  Aligned_cols=59  Identities=17%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|+|+||++||++|+.+.|.++++++.++   .+.|+++|++..   +..|+++.+||+++|++|
T Consensus       104 ~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G  162 (192)
T cd02988         104 WVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC---IPNYPDKNLPTILVYRNG  162 (192)
T ss_pred             EEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HhhCCCCCCCEEEEEECC
Confidence            68999999999999999999999999986   588999988754   577888888888888876

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.55  E-value=2e-14  Score=82.07  Aligned_cols=62  Identities=31%  Similarity=0.516  Sum_probs=50.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|.||++||++|+.+.+.++++.+. .+  .+.++.+|++.+..+++++++.++||+++++++
T Consensus        12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g   73 (93)
T cd02947          12 PVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG   73 (93)
T ss_pred             cEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECC
Confidence            689999999999999999999999888 33  677888877777777777777777777766654

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.55  E-value=1.5e-14  Score=105.75  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=62.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-----cc-cccccCCccccceEEEcCceeeeceeeE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-----HG-PLCKEYDIKGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----~~-~~~~~~~v~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      .+|+|+|||+||++|++++|.++++.++++.. .+.++.+..+.     +. ++.+.+....+|               .
T Consensus        57 KpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~---------------~  120 (521)
T PRK14018         57 KPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYP---------------K  120 (521)
T ss_pred             CEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCc---------------c
Confidence            47999999999999999999999999998754 46666665421     11 111111111111               1


Q ss_pred             EEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          75 AAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ..+..+.+..+++.|+|+++||++++++++++
T Consensus       121 ~pV~~D~~~~lak~fgV~giPTt~IIDkdGkI  152 (521)
T PRK14018        121 LPVLTDNGGTLAQSLNISVYPSWAIIGKDGDV  152 (521)
T ss_pred             cceeccccHHHHHHcCCCCcCeEEEEcCCCeE
Confidence            23455778899999999999999888554443

>KOG0912|consensus

Probab=99.55  E-value=8.7e-15  Score=99.43  Aligned_cols=79  Identities=22%  Similarity=0.454  Sum_probs=67.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      .|+|.|||+||+.++.++|.+++.++.++..            .++                      +++..+.|||+.
T Consensus        15 lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e------------~P~----------------------~kvvwg~VDcd~   60 (375)
T KOG0912|consen   15 LVFVNFYADWCRFSQMLKPIFEEAAAKFKQE------------FPE----------------------GKVVWGKVDCDK   60 (375)
T ss_pred             EEeeeeehhhchHHHHHhHHHHHHHHHHHHh------------CCC----------------------cceEEEEcccch
Confidence            5899999999999999999999999988752            111                      357889999999


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+|+.+|.|..|||+-+|++|... ..+|.|+.
T Consensus        61 e~~ia~ky~I~KyPTlKvfrnG~~~-~rEYRg~R   93 (375)
T KOG0912|consen   61 EDDIADKYHINKYPTLKVFRNGEMM-KREYRGQR   93 (375)
T ss_pred             hhHHhhhhccccCceeeeeeccchh-hhhhccch
Confidence            9999999999999999999999763 56898875

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.55  E-value=2.5e-14  Score=90.12  Aligned_cols=75  Identities=16%  Similarity=0.331  Sum_probs=49.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +.+|+|||+||++|++++|.+++++++++    +.++.++.+....       ..+|..                ++.+ 
T Consensus        52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~-------~~fp~~----------------~~~~-  103 (153)
T TIGR02738        52 YALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGL-------TGFPDP----------------LPAT-  103 (153)
T ss_pred             CEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcc-------cccccc----------------cCCc-
Confidence            46899999999999999999999999883    4555555554321       122211                1111 


Q ss_pred             ccchhhhc---CCCCCCEEEEecCCc
Q psy3452          82 HGPLCKEY---DIKGYPTFQYFHYFN  104 (116)
Q Consensus        82 ~~~~~~~~---~v~~~Pt~~~~~~g~  104 (116)
                      .....+.|   ++.++||++++++.+
T Consensus       104 ~~~~~~~~~~~~v~~iPTt~LID~~G  129 (153)
T TIGR02738       104 PEVMQTFFPNPRPVVTPATFLVNVNT  129 (153)
T ss_pred             hHHHHHHhccCCCCCCCeEEEEeCCC
Confidence            12223345   889999999996543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.55  E-value=1.8e-14  Score=87.09  Aligned_cols=43  Identities=19%  Similarity=0.397  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      ++++|+|||+||++|+.+.|.+.+.......  ...++.++.+.+
T Consensus        20 kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~   62 (117)
T cd02959          20 KPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDD   62 (117)
T ss_pred             CcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCC
Confidence            4799999999999999999999987665543  223444444433

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PTZ00062 glutaredoxin; Provisional

Probab=99.55  E-value=6.8e-14  Score=91.71  Aligned_cols=54  Identities=7%  Similarity=-0.012  Sum_probs=50.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++++|||+||++|+.+.|.+.++++.++   .+.|+.||.+        ++|.++||++||++|
T Consensus        19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------~~V~~vPtfv~~~~g   72 (204)
T PTZ00062         19 KLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------DANNEYGVFEFYQNS   72 (204)
T ss_pred             cEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------cCcccceEEEEEECC
Confidence            47899999999999999999999999997   6999999877        999999999999998

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.54  E-value=3.7e-14  Score=102.35  Aligned_cols=76  Identities=33%  Similarity=0.637  Sum_probs=55.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      ..++|+||++||++|+.+.|.++++++.+++.. .+.++++|++.+.                                 
T Consensus       365 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~---------------------------------  411 (462)
T TIGR01130       365 KDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND---------------------------------  411 (462)
T ss_pred             CeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc---------------------------------
Confidence            368999999999999999999999999998622 4555555554432                                 


Q ss_pred             cCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                           +.. ++++++||+++|++|++..+..|.|..
T Consensus       412 -----~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~  441 (462)
T TIGR01130       412 -----VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDR  441 (462)
T ss_pred             -----cCC-CCccccCEEEEEeCCCCcCceEecCcC
Confidence                 222 677777888777777665556676654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.54  E-value=1.9e-14  Score=87.85  Aligned_cols=86  Identities=15%  Similarity=0.276  Sum_probs=64.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-----cc----cccccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-----HG----PLCKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----~~----~~~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      ++++|+||++||++|.+.+|.++++.+++++. .+.++.++.++     ..    +.++++++. +|             
T Consensus        24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~-~p-------------   88 (126)
T cd03012          24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGIT-YP-------------   88 (126)
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCC-CC-------------
Confidence            47899999999999999999999999999875 47777776521     11    233454442 23             


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                           +-.+.+..+.+.|+++++|+.+++++++++
T Consensus        89 -----~~~D~~~~~~~~~~v~~~P~~~vid~~G~v  118 (126)
T cd03012          89 -----VANDNDYATWRAYGNQYWPALYLIDPTGNV  118 (126)
T ss_pred             -----EEECCchHHHHHhCCCcCCeEEEECCCCcE
Confidence                 222567789999999999999999665553

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.52  E-value=3.4e-14  Score=91.18  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=59.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++||++|+++.|.++++.+.     ++.++.++.++..    +.+++++..                  +..
T Consensus        64 k~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~------------------f~~  120 (173)
T TIGR00385        64 KPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNP------------------YQA  120 (173)
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCC------------------Cce
Confidence            3789999999999999999999887652     4777888765432    233343321                  122


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +..+.+..+.+.|++.++|+.+++++++++
T Consensus       121 v~~D~~~~~~~~~~v~~~P~~~~id~~G~i  150 (173)
T TIGR00385       121 ILIDPNGKLGLDLGVYGAPETFLVDGNGVI  150 (173)
T ss_pred             EEECCCCchHHhcCCeeCCeEEEEcCCceE
Confidence            344667889999999999988888654443

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PHA02125 thioredoxin-like protein

Probab=99.51  E-value=3.8e-14  Score=79.27  Aligned_cols=50  Identities=26%  Similarity=0.406  Sum_probs=44.0

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      ++.||++||++|+.+.|.++++        .+.++++|.+++.+++++|+++++||++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~--------~~~~~~vd~~~~~~l~~~~~v~~~PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANV--------EYTYVDVDTDEGVELTAKHHIRSLPTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHH--------hheEEeeeCCCCHHHHHHcCCceeCeEE
Confidence            7899999999999999998754        2467889998999999999999999987

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.51  E-value=5.4e-14  Score=76.83  Aligned_cols=57  Identities=26%  Similarity=0.438  Sum_probs=48.6

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      -+..|+++||++|+.+.+.++++++..+   ++.+..+|.++++++++++++.++||+++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            3678999999999999999999977653   58888999888888888888888888764

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.51  E-value=4.8e-14  Score=82.96  Aligned_cols=62  Identities=18%  Similarity=0.366  Sum_probs=53.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc--ccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK--GYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~   65 (116)
                      ++++.|+++||++|..+.|.++++++++.+  ++.++.+|+++++.+++.+++.  ++|++++++.
T Consensus        14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~   77 (103)
T cd02982          14 PLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL   77 (103)
T ss_pred             CEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence            689999999999999999999999999987  6888888888877777777777  7777776665

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.50  E-value=7.5e-14  Score=84.95  Aligned_cols=41  Identities=20%  Similarity=0.336  Sum_probs=34.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      .++|+|+++|||+|+.+.|.+.+++++.    +..+..+|.+.++
T Consensus        25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~   65 (122)
T TIGR01295        25 TATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNG   65 (122)
T ss_pred             cEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCcc
Confidence            4689999999999999999999999983    4677888877654

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG1731|consensus

Probab=99.49  E-value=1e-14  Score=105.77  Aligned_cols=64  Identities=34%  Similarity=0.700  Sum_probs=57.3

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCC--CcccccccCCccccceEEEcCce
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCT--EHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+|+||++|||+|++++|.++++++.+..-. .+.++.|||.  .|..+|++++|..+||+.+|..+
T Consensus        60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~  126 (606)
T KOG1731|consen   60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPD  126 (606)
T ss_pred             HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCc
Confidence            5788999999999999999999999997765 7888999986  46789999999999999988876

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.48  E-value=2.3e-13  Score=101.18  Aligned_cols=78  Identities=21%  Similarity=0.275  Sum_probs=57.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++|+|+|||+||++|+.+.+..   .++.+.++   ++.++++|.++++                               
T Consensus       475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~-------------------------------  520 (571)
T PRK00293        475 KPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANN-------------------------------  520 (571)
T ss_pred             CcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCC-------------------------------
Confidence            4799999999999999998875   66777775   4778888877653                               


Q ss_pred             eccCccchhhhcCCCCCCEEEEec-CCcccCCcCCCCC
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFH-YFNKQSPSPYHND  114 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~y~g~  114 (116)
                        .++.++.++|++.++||+++|+ +|+.+....+.|.
T Consensus       521 --~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~  556 (571)
T PRK00293        521 --AEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGF  556 (571)
T ss_pred             --hhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCC
Confidence              1245678888888889888886 4444333455554

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.48  E-value=2.5e-13  Score=86.76  Aligned_cols=93  Identities=15%  Similarity=0.218  Sum_probs=68.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.||++||++|+...+.+.++.+++++. .+.++.++++..++.    .+++++.                  + .
T Consensus        62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~------------------~-~  121 (173)
T PRK03147         62 KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLT------------------F-P  121 (173)
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCC------------------c-e
Confidence            36899999999999999999999999999875 478888888765432    2333321                  1 1


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      +-++.+.++.+.|++++.|+++++++++++. ..+.|.
T Consensus       122 ~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~-~~~~g~  158 (173)
T PRK03147        122 VAIDKGRQVIDAYGVGPLPTTFLIDKDGKVV-KVITGE  158 (173)
T ss_pred             EEECCcchHHHHcCCCCcCeEEEECCCCcEE-EEEeCC
Confidence            2336678999999999999999997666542 334444

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.47  E-value=1.9e-13  Score=85.21  Aligned_cols=86  Identities=24%  Similarity=0.419  Sum_probs=64.7

Q ss_pred             CeEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++ ||++|++.+|.+.++.+.+++. .+.++.+..+.+..   .+++++.. +|               +  
T Consensus        29 k~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~-~~---------------~--   89 (146)
T PF08534_consen   29 KPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGIN-FP---------------V--   89 (146)
T ss_dssp             SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTT-SE---------------E--
T ss_pred             CeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCC-ce---------------E--
Confidence            4689999999 9999999999999999998775 37777777666654   22332221 11               1  


Q ss_pred             EeccCccchhhhcCCC---------CCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIK---------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~---------~~Pt~~~~~~g~~~  106 (116)
                       -.+.+..+.++|++.         ++|+++++++++++
T Consensus        90 -~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V  127 (146)
T PF08534_consen   90 -LSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKV  127 (146)
T ss_dssp             -EEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBE
T ss_pred             -EechHHHHHHHhCCccccccccCCeecEEEEEECCCEE
Confidence             224788999999999         99999999776665

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.47  E-value=1.6e-13  Score=83.11  Aligned_cols=81  Identities=15%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .+++|.||++||++|+.+.|.+.++.+.+    .+..+..|.+...   ..++++++ .+|                  +
T Consensus        21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~-~~~------------------~   77 (123)
T cd03011          21 KPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGY-GFP------------------V   77 (123)
T ss_pred             CEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCC-Ccc------------------E
Confidence            37899999999999999999999998774    3444444432222   33444443 122                  2


Q ss_pred             eccCccchhhhcCCCCCCEEEEecCCc
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      -.+.+.++++.|+|.+.|+++++++++
T Consensus        78 ~~d~~~~~~~~~~i~~~P~~~vid~~g  104 (123)
T cd03011          78 INDPDGVISARWGVSVTPAIVIVDPGG  104 (123)
T ss_pred             EECCCcHHHHhCCCCcccEEEEEcCCC
Confidence            235667899999999999999998776

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.47  E-value=2.9e-13  Score=87.06  Aligned_cols=83  Identities=13%  Similarity=0.229  Sum_probs=58.0

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHG   83 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~~~   83 (116)
                      +|+||++||++|++++|.++++++++    .+.++.++.+...+       ..+|.+                ++ +...
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~----g~~Vi~Vs~D~~~~-------~~fPv~----------------~d-d~~~  124 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQY----GFSVFPYTLDGQGD-------TAFPEA----------------LP-APPD  124 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHc----CCEEEEEEeCCCCC-------CCCceE----------------ec-Cchh
Confidence            67899999999999999999999998    36777777664432       133422                11 1345


Q ss_pred             chhhhcCC--CCCCEEEEecCCcccCCcCCCCC
Q psy3452          84 PLCKEYDI--KGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        84 ~~~~~~~v--~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .+.+.|++  .++||.++++.++++....+-|.
T Consensus       125 ~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~  157 (181)
T PRK13728        125 VMQTFFPNIPVATPTTFLVNVNTLEALPLLQGA  157 (181)
T ss_pred             HHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECC
Confidence            57778985  79999999976666432234444

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.46  E-value=1.7e-13  Score=76.82  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      |.||++||++|+.+.|.+++++++++.  .+.+.++|   +.+.+.++++.++||+++ ++
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~~~a~~~~v~~vPti~i-~G   57 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DMNEILEAGVTATPGVAV-DG   57 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CHHHHHHcCCCcCCEEEE-CC
Confidence            789999999999999999999999876  57777776   233366788888888887 44

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02740 TraF-like TraF-like protein

Probab=99.46  E-value=3.5e-13  Score=92.03  Aligned_cols=76  Identities=13%  Similarity=0.277  Sum_probs=56.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|+||++||++|+.+.|.+++++++++    +.++.++.+....       ..+|            .       ..
T Consensus       167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~-------~~fp------------~-------~~  216 (271)
T TIGR02740       167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPL-------PGFP------------N-------AR  216 (271)
T ss_pred             CeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCcc-------ccCC------------c-------cc
Confidence            368999999999999999999999999984    5666666655431       1122            1       12


Q ss_pred             CccchhhhcCCCCCCEEEEecC-Cccc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHY-FNKQ  106 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~-g~~~  106 (116)
                      .+..++++++|+++||++++++ |+.+
T Consensus       217 ~d~~la~~~gV~~vPtl~Lv~~~~~~v  243 (271)
T TIGR02740       217 PDAGQAQQLKIRTVPAVFLADPDPNQF  243 (271)
T ss_pred             CCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence            3456788999999999999976 5554

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.45  E-value=1.9e-13  Score=107.33  Aligned_cols=86  Identities=17%  Similarity=0.274  Sum_probs=62.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC---CCcc------cccccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC---TEHG------PLCKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~---~~~~------~~~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      .+++|+|||+||++|+++.|.++++.+++++. .+.++.+..   +..+      ....++++. +|             
T Consensus       421 K~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~-~p-------------  485 (1057)
T PLN02919        421 KVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNIS-HP-------------  485 (1057)
T ss_pred             CEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCC-cc-------------
Confidence            47999999999999999999999999999875 477777743   2211      223344432 22             


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                           +-.+.+..+.++|+|.++||++++++.+++
T Consensus       486 -----vv~D~~~~~~~~~~V~~iPt~ilid~~G~i  515 (1057)
T PLN02919        486 -----VVNDGDMYLWRELGVSSWPTFAVVSPNGKL  515 (1057)
T ss_pred             -----EEECCchHHHHhcCCCccceEEEECCCCeE
Confidence                 223567789999999999999999544443

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.44  E-value=5.7e-13  Score=78.75  Aligned_cols=86  Identities=21%  Similarity=0.391  Sum_probs=63.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-cccc----ccCCccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-GPLC----KEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      +++++.||++||++|++..+.+.++.+.+... .+.++.++.+.+ .+..    ++++   .|               +.
T Consensus        20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~---~~---------------~~   80 (116)
T cd02966          20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYG---IT---------------FP   80 (116)
T ss_pred             CEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcC---CC---------------cc
Confidence            47899999999999999999999999998633 688889888874 3222    2322   11               11


Q ss_pred             EEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                       +-.+.+.++.+.|++.+.|+++++++++++
T Consensus        81 -~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v  110 (116)
T cd02966          81 -VLLDPDGELAKAYGVRGLPTTFLIDRDGRI  110 (116)
T ss_pred             -eEEcCcchHHHhcCcCccceEEEECCCCcE
Confidence             112346789999999999999999765543

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.40  E-value=5.9e-13  Score=88.19  Aligned_cols=62  Identities=23%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCcee
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTI   67 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v   67 (116)
                      .++.||++||++|+.+.+.+++++...+   .+.+..+|.+++++++++++|.++||+++++++.
T Consensus       136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~  197 (215)
T TIGR02187       136 RIEVFVTPTCPYCPYAVLMAHKFALAND---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE  197 (215)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence            4556999999999999999999988753   6888999999999999999999999999987753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.38  E-value=1.7e-12  Score=79.07  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=37.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCK   50 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~   50 (116)
                      ++++|+|+++||+.|+.+.+..   .++.+.+..  ++.++++|.++.+++++
T Consensus        16 KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~   66 (124)
T cd02955          16 KPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDK   66 (124)
T ss_pred             CeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHH
Confidence            4799999999999999998743   366666655  68899999888776544

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.34  E-value=9.5e-12  Score=79.56  Aligned_cols=86  Identities=22%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-------c----cccccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-------G----PLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~----~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      .+++++||++||+.|....+.+.++.+++++. ++.++.+..+..       .    ...+++++. +|           
T Consensus        26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~-~~-----------   92 (171)
T cd02969          26 KALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYP-FP-----------   92 (171)
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCC-ce-----------
Confidence            37899999999999999999999999999854 577888876542       1    122334332 22           


Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                             +-.+.+..+.+.|++...|+++++++++++
T Consensus        93 -------~l~D~~~~~~~~~~v~~~P~~~lid~~G~v  122 (171)
T cd02969          93 -------YLLDETQEVAKAYGAACTPDFFLFDPDGKL  122 (171)
T ss_pred             -------EEECCchHHHHHcCCCcCCcEEEECCCCeE
Confidence                   122456789999999999999999766654

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.34  E-value=3e-12  Score=83.31  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      .+++|+||++||++|+++.|.+.++.+....  .+.++..|.. +..+.++++++.. |                 ... 
T Consensus        75 k~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~-~-----------------~~~-  133 (189)
T TIGR02661        75 RPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGG-E-----------------RYV-  133 (189)
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCc-c-----------------eee-
Confidence            3689999999999999999999998876532  3444432211 1123444544422 1                 111 


Q ss_pred             cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                       .+.++.+.|++...|+.+++++++++
T Consensus       134 -~~~~i~~~y~v~~~P~~~lID~~G~I  159 (189)
T TIGR02661       134 -VSAEIGMAFQVGKIPYGVLLDQDGKI  159 (189)
T ss_pred             -chhHHHHhccCCccceEEEECCCCeE
Confidence             24678899999999999999765553

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.33  E-value=8.7e-13  Score=78.69  Aligned_cols=86  Identities=20%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHH---HHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKA---AEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~---~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .++++.||++||++|+++.+.+.+.   .+.+.+  .+.++.++.+..........-..              +..  . 
T Consensus         6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~-   66 (112)
T PF13098_consen    6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFD--------------GQK--N-   66 (112)
T ss_dssp             SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHT--------------CHS--S-
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccc--------------cch--h-
Confidence            3689999999999999999988854   344433  57778887776543221100000              000  0 


Q ss_pred             eccCccchhhhcCCCCCCEEEEec-CCcc
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFH-YFNK  105 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~  105 (116)
                      -...+.++.+.++|+++||+++++ +|+.
T Consensus        67 ~~~~~~~l~~~~~v~gtPt~~~~d~~G~~   95 (112)
T PF13098_consen   67 VRLSNKELAQRYGVNGTPTIVFLDKDGKI   95 (112)
T ss_dssp             CHHHHHHHHHHTT--SSSEEEECTTTSCE
T ss_pred             hhHHHHHHHHHcCCCccCEEEEEcCCCCE
Confidence            002455899999999999999996 4553

...

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.31  E-value=5e-12  Score=79.54  Aligned_cols=41  Identities=17%  Similarity=0.249  Sum_probs=35.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++|+||++||+ |++.+|.++++.+++++. .+.++.++++
T Consensus        23 k~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~   63 (152)
T cd00340          23 KVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN   63 (152)
T ss_pred             CEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence            4789999999999 999999999999999765 4788887654

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.31  E-value=5.6e-12  Score=81.42  Aligned_cols=92  Identities=5%  Similarity=-0.032  Sum_probs=60.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEE------EEEeCCCcccccccC--------CccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVAL------AAIDCTEHGPLCKEY--------DIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~------~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~~   66 (116)
                      ++++|+|||+||++|+...|.++++.+.     ++.+      ..+|.++.......|        +. .+|        
T Consensus        60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~-~~P--------  125 (184)
T TIGR01626        60 KVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKK-ENP--------  125 (184)
T ss_pred             CEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcc-cCC--------
Confidence            4689999999999999999999999543     3444      677766643222222        22 223        


Q ss_pred             eeeceeeEEEEeccCccchhhhcCCCCCCEE-EEecCCcccCCcCCCCC
Q psy3452          67 IMIIRLALAAIDCTEHGPLCKEYDIKGYPTF-QYFHYFNKQSPSPYHND  114 (116)
Q Consensus        67 v~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~-~~~~~g~~~~~~~y~g~  114 (116)
                             +..+-.+.+......|++.+.|+. +++++.+++ ...+.|.
T Consensus       126 -------~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkV-v~~~~G~  166 (184)
T TIGR01626       126 -------WSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKV-KFVKEGA  166 (184)
T ss_pred             -------cceEEECCcchHHHhcCCCCCCceEEEECCCCcE-EEEEeCC
Confidence                   111222457778889999999888 788666654 2344443

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.28  E-value=1.1e-11  Score=74.94  Aligned_cols=86  Identities=20%  Similarity=0.385  Sum_probs=67.1

Q ss_pred             CeEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++ ||+.|+...+.+.++.++++.. ++.++.+..+...++   .++++. .+                  .
T Consensus        26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~-~~------------------~   85 (124)
T PF00578_consen   26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGL-PF------------------P   85 (124)
T ss_dssp             SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTC-SS------------------E
T ss_pred             CcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhcc-cc------------------c
Confidence            4789999999 9999999999999999999865 588888888766533   333331 11                  2


Q ss_pred             EeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.++++.|++.      ..|+++++++++++
T Consensus        86 ~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I  121 (124)
T PF00578_consen   86 VLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKI  121 (124)
T ss_dssp             EEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBE
T ss_pred             cccCcchHHHHHcCCccccCCceEeEEEEECCCCEE
Confidence            2235788999999999      99999999887764

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.27  E-value=1.9e-11  Score=70.44  Aligned_cols=60  Identities=15%  Similarity=0.095  Sum_probs=52.1

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      -+..|+++||++|....+.++++++.++   ++.+..+|.++.++++++|+|.++||+++ ++.
T Consensus        15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi-dG~   74 (89)
T cd03026          15 NFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL-NGE   74 (89)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE-CCE
Confidence            4677999999999999999999998875   58999999999988999999999999964 443

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PLN02412 probable glutathione peroxidase

Probab=99.27  E-value=2.5e-11  Score=77.57  Aligned_cols=42  Identities=19%  Similarity=0.268  Sum_probs=37.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++|.||++||++|++.+|.+.++.+++++.+ +.++.++++
T Consensus        30 k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g-~~vvgv~~~   71 (167)
T PLN02412         30 KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG-FEILAFPCN   71 (167)
T ss_pred             CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC-cEEEEeccc
Confidence            478999999999999999999999999998764 888888764

>KOG0191|consensus

Probab=99.26  E-value=8.3e-12  Score=89.01  Aligned_cols=65  Identities=38%  Similarity=0.719  Sum_probs=60.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++|.||+|||++|+.+.|.|+++++.+.....+.+..+|++....+++++++..+||+.+|.++
T Consensus       164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~  228 (383)
T KOG0191|consen  164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPG  228 (383)
T ss_pred             ceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCC
Confidence            47999999999999999999999999997544899999999999999999999999999999977

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.21  E-value=6.5e-11  Score=77.63  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=37.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|.|||+||++|++.+|.++++.+++++.+ +.++.++++
T Consensus        40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g-~~vvgv~~~   81 (199)
T PTZ00056         40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG-LEILAFPTS   81 (199)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc-eEEEEecch
Confidence            478999999999999999999999999998764 788888763

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.21  E-value=2.3e-11  Score=68.99  Aligned_cols=61  Identities=30%  Similarity=0.448  Sum_probs=44.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      ++++|+|+++||++|+.+...+   .++.+.+.+  ++..+++|.++.....+. ...++|++++++
T Consensus        18 kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld   81 (82)
T PF13899_consen   18 KPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD   81 (82)
T ss_dssp             SEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred             CCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence            4799999999999999998877   455554554  799999998766543321 114577777765

...

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.20  E-value=8.8e-11  Score=73.02  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=60.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEEcCceeeeceeeEEEEe
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHHLALTIMIIRLALAAID   78 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~   78 (116)
                      ++++.||++||+.|++.+|.+.++.+++.+. .+.++.+..+......   +++++ .+|                  +-
T Consensus        26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~~~~~~~~~~~~~-~~p------------------~~   85 (149)
T cd02970          26 VVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESPEKLEAFDKGKFL-PFP------------------VY   85 (149)
T ss_pred             EEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCHHHHHHHHHhcCC-CCe------------------EE
Confidence            3455557999999999999999999999754 4788888877654432   22222 122                  23


Q ss_pred             ccCccchhhhcCCC-----------------------------CCCEEEEecCCccc
Q psy3452          79 CTEHGPLCKEYDIK-----------------------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        79 ~~~~~~~~~~~~v~-----------------------------~~Pt~~~~~~g~~~  106 (116)
                      .+.+..+.+.|++.                             ..|+.+++++++.+
T Consensus        86 ~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i  142 (149)
T cd02970          86 ADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTI  142 (149)
T ss_pred             ECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeE
Confidence            35667788888874                             79999999876664

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.18  E-value=4.9e-11  Score=79.90  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=37.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++|.||++||++|.+..|.++++.+++++.+ +.++.++++
T Consensus       100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G-v~VIgV~~d  141 (236)
T PLN02399        100 KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG-FEILAFPCN  141 (236)
T ss_pred             CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC-cEEEEEecc
Confidence            478999999999999999999999999998763 788888764

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.13  E-value=1.8e-10  Score=71.09  Aligned_cols=86  Identities=16%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.|| +.||+.|....+.+.++.+.+.+. .+.++.+..+....+.   +++++ .+|                  
T Consensus        24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~-~~~------------------   83 (140)
T cd03017          24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGL-PFP------------------   83 (140)
T ss_pred             CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCC-Cce------------------
Confidence            36899999 689999999999999999999765 4777777766544332   23332 122                  


Q ss_pred             EeccCccchhhhcCCCCC---------CEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGY---------PTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~---------Pt~~~~~~g~~~  106 (116)
                      +-.+.+..+.+.|++...         |+++++++++++
T Consensus        84 ~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v  122 (140)
T cd03017          84 LLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKI  122 (140)
T ss_pred             EEECCccHHHHHhCCccccccccCCcceeEEEECCCCEE
Confidence            223556789999999988         999999765554

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.12  E-value=4.6e-10  Score=68.73  Aligned_cols=41  Identities=5%  Similarity=0.116  Sum_probs=29.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|+|+++||++|+++...+   .++.+..+.  ++..+.++.+
T Consensus        24 Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d   67 (130)
T cd02960          24 KPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHE   67 (130)
T ss_pred             CeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEec
Confidence            4799999999999999998765   344555543  4666666654

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG2501|consensus

Probab=99.12  E-value=1e-10  Score=73.15  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=64.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCccc-ccccCCccccceEEEcCceeeeceeeEEEEe
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGP-LCKEYDIKGYPTFHHLALTIMIIRLALAAID   78 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~   78 (116)
                      ++|.++|.|.||++|+.+-|.+.++.+++++++ .+.++-|+.|.+.+ +...+....             +.=......
T Consensus        34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~-------------~~W~~iPf~  100 (157)
T KOG2501|consen   34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHH-------------GDWLAIPFG  100 (157)
T ss_pred             cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcC-------------CCeEEecCC
Confidence            468899999999999999999999999998865 57777777665532 222222111             111223334


Q ss_pred             ccCccchhhhcCCCCCCEEEEecCCc
Q psy3452          79 CTEHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        79 ~~~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      .+...++.++|.|.+.|++.+++..+
T Consensus       101 d~~~~~l~~ky~v~~iP~l~i~~~dG  126 (157)
T KOG2501|consen  101 DDLIQKLSEKYEVKGIPALVILKPDG  126 (157)
T ss_pred             CHHHHHHHHhcccCcCceeEEecCCC
Confidence            45677899999999999999995554

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.11  E-value=2.4e-10  Score=67.09  Aligned_cols=60  Identities=23%  Similarity=0.420  Sum_probs=49.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCC--ccccceEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYD--IKGYPTFHH   62 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~   62 (116)
                      +++++.||++||++|+.+.|.+.++.+.+..  .+.+..++.. ..+.....++  +..+|++.+
T Consensus        33 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~   95 (127)
T COG0526          33 KPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLL   95 (127)
T ss_pred             ceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEE
Confidence            3688999999999999999999999999986  5788888886 6677777777  677776653

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.10  E-value=4.8e-10  Score=71.62  Aligned_cols=85  Identities=12%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             CeEEEEEEcCC-CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPG-CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++| |++|...+|.++++.+++.   ++.++.++.+..   .+.++++++..+|                  
T Consensus        45 k~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~------------------  103 (167)
T PRK00522         45 KRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLENVI------------------  103 (167)
T ss_pred             CEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCCCce------------------
Confidence            36899999999 9999999999999999884   477777777643   2344454443222                  


Q ss_pred             Eecc-CccchhhhcCCCCCC---------EEEEecCCccc
Q psy3452          77 IDCT-EHGPLCKEYDIKGYP---------TFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~-~~~~~~~~~~v~~~P---------t~~~~~~g~~~  106 (116)
                      +-.+ .+.++++.|++...|         +.+++++++++
T Consensus       104 ~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I  143 (167)
T PRK00522        104 TLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKV  143 (167)
T ss_pred             EeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeE
Confidence            2223 456899999998777         99999766554

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.10  E-value=2.1e-10  Score=72.20  Aligned_cols=41  Identities=12%  Similarity=0.262  Sum_probs=36.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      ++++|.|||+||++|++.+|.+.++.+++++. .+.++.+++
T Consensus        23 k~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~   63 (153)
T TIGR02540        23 KVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC   63 (153)
T ss_pred             CEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence            36889999999999999999999999999876 478888875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.08  E-value=4.6e-10  Score=71.98  Aligned_cols=89  Identities=8%  Similarity=0.055  Sum_probs=63.0

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCC----ccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYD----IKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~----v~~~Pt~~~~~~~v~f~~~   72 (116)
                      ++++|.|| ++||+.|....+.+.++.+++.+. ++.++.++.+....   ..+...    ....|              
T Consensus        30 k~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~--------------   94 (173)
T cd03015          30 KWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKIN--------------   94 (173)
T ss_pred             CEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcc--------------
Confidence            46899999 899999999999999999999765 47777777665432   222211    11211              


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                        ..+-.+.+..+.+.|++.      ..|+.+++++.+++
T Consensus        95 --f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I  132 (173)
T cd03015          95 --FPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGII  132 (173)
T ss_pred             --eeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeE
Confidence              123346778899999986      67899999766554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.06  E-value=1.1e-09  Score=67.91  Aligned_cols=85  Identities=12%  Similarity=0.063  Sum_probs=60.1

Q ss_pred             CeEEEEEEcCC-CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPG-CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++| |++|+..+|.+.++.++++   .+.++.++.+...   +..+++++..+|                  
T Consensus        27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~------------------   85 (143)
T cd03014          27 KVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADLPFAQKRWCGAEGVDNVT------------------   85 (143)
T ss_pred             CeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCCHHHHHHHHHhcCCCCce------------------
Confidence            47899999999 6999999999999999975   4788888876543   223343332322                  


Q ss_pred             EeccC-ccchhhhcCCCC------CCEEEEecCCccc
Q psy3452          77 IDCTE-HGPLCKEYDIKG------YPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~-~~~~~~~~~v~~------~Pt~~~~~~g~~~  106 (116)
                      +-++. +..+++.|++..      .|+.+++++++++
T Consensus        86 ~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I  122 (143)
T cd03014          86 TLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKV  122 (143)
T ss_pred             EeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeE
Confidence            11233 378888998863      6899999765554

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=99.04  E-value=1.1e-09  Score=57.67  Aligned_cols=58  Identities=31%  Similarity=0.655  Sum_probs=39.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc---cCCccccceEEEcC
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK---EYDIKGYPTFHHLA   64 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~   64 (116)
                      ++.||++||++|.++.+.+.++ +....  .+.+..++++.......   .+++..+|++++++
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG   61 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence            4789999999999999999988 33333  57787877776654332   34444444444433

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.02  E-value=4.5e-10  Score=82.51  Aligned_cols=68  Identities=24%  Similarity=0.349  Sum_probs=50.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHH---HHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYV---KAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++|+++|||+||-.|+.+.+..-   ++..+.+   ++...++|.++++                               
T Consensus       475 ~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---~~vlLqaDvT~~~-------------------------------  520 (569)
T COG4232         475 KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---DVVLLQADVTAND-------------------------------  520 (569)
T ss_pred             CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---CeEEEEeeecCCC-------------------------------
Confidence            38999999999999999988653   2233333   6889999988775                               


Q ss_pred             eccCccchhhhcCCCCCCEEEEecCCc
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                        .++.++.++|++-+.|++++|+.++
T Consensus       521 --p~~~~lLk~~~~~G~P~~~ff~~~g  545 (569)
T COG4232         521 --PAITALLKRLGVFGVPTYLFFGPQG  545 (569)
T ss_pred             --HHHHHHHHHcCCCCCCEEEEECCCC
Confidence              3455666777777777777776443

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.01  E-value=3.8e-09  Score=68.43  Aligned_cols=40  Identities=15%  Similarity=0.289  Sum_probs=33.8

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      +++.+||+||++|++.+|.++++.+++++. .+.++.++++
T Consensus        44 vlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~   83 (183)
T PTZ00256         44 IIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN   83 (183)
T ss_pred             EEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence            445669999999999999999999999875 4888888764

>TIGR03137 AhpC peroxiredoxin

Probab=98.99  E-value=1.8e-09  Score=70.22  Aligned_cols=89  Identities=11%  Similarity=0.063  Sum_probs=61.6

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccC-CccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEY-DIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~-~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      .+++|.|| ++||+.|...++.+.++.+++.+. .+.++.+..+......   +.. ....               +.+ 
T Consensus        32 k~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~---------------l~f-   94 (187)
T TIGR03137        32 KWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGK---------------ITY-   94 (187)
T ss_pred             CEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccC---------------cce-
Confidence            36899999 999999999999999999999765 4677777766543211   111 0111               111 


Q ss_pred             EEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      .+-.+.+.++++.|++.      ..|+.+++++.+++
T Consensus        95 pllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I  131 (187)
T TIGR03137        95 PMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVI  131 (187)
T ss_pred             eEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEE
Confidence            22235678899999986      46999999765554

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.99  E-value=1.9e-09  Score=67.20  Aligned_cols=85  Identities=12%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +++|.|| ++||+.|....|.++++.+++++. ++.++.++.+....   .+++++. .+|                  +
T Consensus        30 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~-~~~------------------~   89 (149)
T cd03018          30 PVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDSPFSLRAWAEENGL-TFP------------------L   89 (149)
T ss_pred             eEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCCHHHHHHHHHhcCC-Cce------------------E
Confidence            5677777 999999999999999999999765 47777777665432   2233332 122                  1


Q ss_pred             eccCc--cchhhhcCCCC------CCEEEEecCCccc
Q psy3452          78 DCTEH--GPLCKEYDIKG------YPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~--~~~~~~~~v~~------~Pt~~~~~~g~~~  106 (116)
                      -.+..  ..+.+.|++..      .|+.+++++++++
T Consensus        90 ~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v  126 (149)
T cd03018          90 LSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGII  126 (149)
T ss_pred             ecCCCchhHHHHHhCCccccCCCccceEEEECCCCEE
Confidence            12333  77888999873      2488888655544

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.98  E-value=2.8e-09  Score=65.69  Aligned_cols=87  Identities=11%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.|| +.||+.|....|.+.++.++++.. .+.++.+..+....+   .++++-..+|                  
T Consensus        23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~~~~~~~~~~~~~~~~~~------------------   83 (140)
T cd02971          23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDSPFSHKAWAEKEGGLNFP------------------   83 (140)
T ss_pred             CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHhcccCCCce------------------
Confidence            36899999 789999999999999999999544 577777776644322   2232111111                  


Q ss_pred             EeccCccchhhhcCCCCCC---------EEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYP---------TFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~P---------t~~~~~~g~~~  106 (116)
                      +-.+.+..+.+.+++...|         +++++++++++
T Consensus        84 ~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i  122 (140)
T cd02971          84 LLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKI  122 (140)
T ss_pred             EEECCChHHHHHcCCccccccccCceeEEEEEECCCCcE
Confidence            1125566888999988776         78888765554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>KOG0914|consensus

Probab=98.95  E-value=8.3e-10  Score=72.28  Aligned_cols=64  Identities=14%  Similarity=0.320  Sum_probs=57.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc------ccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK------GYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~------~~Pt~~~~~~~   66 (116)
                      +|+|.|+|.|.+.|+...|.+.+++.+|... .+.|.++|....++.+++|+|.      +.||+++|.+|
T Consensus       146 ~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~g  215 (265)
T KOG0914|consen  146 YWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKG  215 (265)
T ss_pred             EEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccCcccccCCeEEEEccc
Confidence            6999999999999999999999999999876 6999999999999999999885      47777777765

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.95  E-value=3.9e-09  Score=69.40  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------ccccCCccccceEEEcCceeeeceeeEE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LCKEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      +++.||++||+.|...++.+.++.+++++. ++.++.++++....       +.+++++.                +. .
T Consensus        31 vL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~----------------~~-f   92 (202)
T PRK13190         31 LLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIK----------------IP-F   92 (202)
T ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCC----------------ce-E
Confidence            344689999999999999999999999865 47778887775422       11233331                11 2


Q ss_pred             EEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      .+-++.+.++++.|++.      ..|+++++++++++
T Consensus        93 Pll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I  129 (202)
T PRK13190         93 PVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIV  129 (202)
T ss_pred             EEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEE
Confidence            23446778999999984      58999999776665

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.92  E-value=3.8e-09  Score=66.38  Aligned_cols=86  Identities=13%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             CeEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++ ||+.|....+.+.++.+.+++. .+.++.++.+...++.   +++++ .+|                 .
T Consensus        31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~~~~~~~~~~~~~~-~~~-----------------~   91 (154)
T PRK09437         31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDKPEKLSRFAEKELL-NFT-----------------L   91 (154)
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCC-CCe-----------------E
Confidence            3689999976 6888999999999999999775 4778888776554332   23332 122                 1


Q ss_pred             EeccCccchhhhcCCCCC------------CEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGY------------PTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~------------Pt~~~~~~g~~~  106 (116)
                      + ++...++.+.|++...            |+.+++++++++
T Consensus        92 l-~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i  132 (154)
T PRK09437         92 L-SDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKI  132 (154)
T ss_pred             E-ECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEE
Confidence            2 2455778889988654            677888655554

>PRK15000 peroxidase; Provisional

Probab=98.91  E-value=7.8e-09  Score=67.90  Aligned_cols=89  Identities=11%  Similarity=0.027  Sum_probs=64.6

Q ss_pred             CeEEEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---c----ccCCccccceEEEcCceeeecee
Q psy3452           1 MFYSILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---C----KEYDIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~----~~~~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      .++++.||+ .||+.|...++.+.+..+++++. ++.++.++++.....   .    ++.++..+|              
T Consensus        35 k~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~--------------   99 (200)
T PRK15000         35 KTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVK--------------   99 (200)
T ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccC--------------
Confidence            368999999 59999999999999999999866 477888887754321   1    112332211              


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                        ..+-++.+.++++.|++.      ..|+.+++++.+++
T Consensus       100 --fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I  137 (200)
T PRK15000        100 --YAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIV  137 (200)
T ss_pred             --ceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEE
Confidence              223446778999999997      79999999765554

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.90  E-value=1.8e-09  Score=66.77  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=37.0

Q ss_pred             CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhccCc--ceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLKDNH--KVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~   44 (116)
                      .+++|.||++||++ |....+.+.++.+++++.+  ++.++.+..+.
T Consensus        23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            36899999999998 9999999999999997642  47788777654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.90  E-value=5.2e-09  Score=62.77  Aligned_cols=42  Identities=7%  Similarity=0.053  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      ++++|+|+++||++|+.+....   .++.+.++.  +..+..+|.++
T Consensus        18 K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~   62 (114)
T cd02958          18 KWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDS   62 (114)
T ss_pred             ceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCC
Confidence            4789999999999999997643   555666655  56666666653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.83  E-value=1.7e-08  Score=65.66  Aligned_cols=89  Identities=15%  Similarity=0.138  Sum_probs=63.4

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC-CccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY-DIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~-~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      +++++.|| ++||+.|...++.+.+..+++.+. .+.++.++.+....   .++.. .+..               +.+.
T Consensus        32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~---------------l~fp   95 (187)
T PRK10382         32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAK---------------IKYA   95 (187)
T ss_pred             CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccC---------------Ccee
Confidence            36889999 999999999999999999999765 47788887765433   22211 1111               2222


Q ss_pred             EEeccCccchhhhcCC----CCC--CEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDI----KGY--PTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v----~~~--Pt~~~~~~g~~~  106 (116)
                       +-++.+..+++.|++    .+.  |+.++++.+++|
T Consensus        96 -llsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I  131 (187)
T PRK10382         96 -MIGDPTGALTRNFDNMREDEGLADRATFVVDPQGII  131 (187)
T ss_pred             -EEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEE
Confidence             234678999999998    356  999999766554

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.82  E-value=1.1e-08  Score=56.72  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccccc-----CCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKE-----YDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~v~~~Pt~~   61 (116)
                      ++.||++||++|+++.+.+.+.        .+.+..+|.++++...+.     ++...+|+++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~   56 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK   56 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEEE
Confidence            5679999999999999988764        244556676666544433     2566667653

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.78  E-value=2.5e-08  Score=66.21  Aligned_cols=94  Identities=11%  Similarity=0.066  Sum_probs=63.0

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc--ccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC--KEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~--~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      +++.||++||+.|...++.+.++.+++.+. ++.++.++++......  .++ ++..-     .     ..+. ..+-++
T Consensus        32 VL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~-i~~~~-----~-----~~i~-fPil~D   98 (215)
T PRK13599         32 VLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEW-IKDNT-----N-----IAIP-FPVIAD   98 (215)
T ss_pred             EEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHh-HHHhc-----C-----CCCc-eeEEEC
Confidence            578999999999999999999999999766 4778888877643211  110 10000     0     0112 223346


Q ss_pred             CccchhhhcCCC-------CCCEEEEecCCcccCCc
Q psy3452          81 EHGPLCKEYDIK-------GYPTFQYFHYFNKQSPS  109 (116)
Q Consensus        81 ~~~~~~~~~~v~-------~~Pt~~~~~~g~~~~~~  109 (116)
                      .+.++++.|++.       ..|+++++++.+++...
T Consensus        99 ~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~  134 (215)
T PRK13599         99 DLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI  134 (215)
T ss_pred             CCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence            677899999973       68999999776665333

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.76  E-value=2e-08  Score=54.99  Aligned_cols=51  Identities=27%  Similarity=0.440  Sum_probs=37.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~   62 (116)
                      +..|+++||++|++..+.+++     .   .+.+..+|.++++.    +.+.+++.++|++++
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~---~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~   56 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----K---GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI   56 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----C---CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence            457999999999999888765     1   47778888876653    334567777777765

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>smart00594 UAS UAS domain

Probab=98.73  E-value=5.1e-08  Score=59.24  Aligned_cols=64  Identities=6%  Similarity=0.147  Sum_probs=44.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++++|+|+++||+.|..+...+   .++.+.++.  ++.+..+|.+..+                               
T Consensus        28 K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~e-------------------------------   74 (122)
T smart00594       28 RLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSE-------------------------------   74 (122)
T ss_pred             CCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChh-------------------------------
Confidence            3689999999999999988654   555566654  5666666654332                               


Q ss_pred             eccCccchhhhcCCCCCCEEEEec
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFH  101 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~  101 (116)
                          ..+++..|+++++|+++++.
T Consensus        75 ----g~~l~~~~~~~~~P~~~~l~   94 (122)
T smart00594       75 ----GQRVSQFYKLDSFPYVAIVD   94 (122)
T ss_pred             ----HHHHHHhcCcCCCCEEEEEe
Confidence                24566677777777777773

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.73  E-value=4.1e-08  Score=64.61  Aligned_cols=87  Identities=11%  Similarity=-0.003  Sum_probs=59.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc-------ccCCccccceEEEcCceeeeceeeE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC-------KEYDIKGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-------~~~~v~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      ++++.||++||+.|...++.+.++.+++++. ++.++.++++......       +..+ ..+               . 
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~-~~~---------------~-   89 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTG-VEI---------------P-   89 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcC-CCC---------------c-
Confidence            3566899999999999999999999999765 4778888777643211       1111 111               1 


Q ss_pred             EEEeccCccchhhhcCCC----C----CCEEEEecCCccc
Q psy3452          75 AAIDCTEHGPLCKEYDIK----G----YPTFQYFHYFNKQ  106 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~----~----~Pt~~~~~~g~~~  106 (116)
                      ..+-++.+..+++.|++.    +    .|+.+++++++++
T Consensus        90 fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I  129 (203)
T cd03016          90 FPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKI  129 (203)
T ss_pred             eeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeE
Confidence            223346678899999875    2    3568899766555

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13189 peroxiredoxin; Provisional

Probab=98.72  E-value=7e-08  Score=64.36  Aligned_cols=87  Identities=8%  Similarity=0.045  Sum_probs=61.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---ccc----CCccccceEEEcCceeeeceeeE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKE----YDIKGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~----~~v~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      .+++.||++||+.|....+.+.++.+++++. ++.++.++++.....   ++.    .+. .               +. 
T Consensus        38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~-~---------------i~-   99 (222)
T PRK13189         38 FVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGV-E---------------IE-   99 (222)
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCc-C---------------cc-
Confidence            3456889999999999999999999999765 477788877754321   111    121 1               11 


Q ss_pred             EEEeccCccchhhhcCCC-------CCCEEEEecCCccc
Q psy3452          75 AAIDCTEHGPLCKEYDIK-------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~-------~~Pt~~~~~~g~~~  106 (116)
                      ..+-++.+.++++.|++.       ..|+++++++.+++
T Consensus       100 fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~I  138 (222)
T PRK13189        100 FPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGII  138 (222)
T ss_pred             eeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeE
Confidence            223346678899999975       56999999766665

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.72  E-value=2.8e-08  Score=56.10  Aligned_cols=54  Identities=26%  Similarity=0.418  Sum_probs=37.2

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-----ccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-----LCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~~Pt~~   61 (116)
                      ++.|+++||++|+++.+.++++.  .++  .+.+..++.+++..     +.+.+++..+|++.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~   59 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF   59 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence            46799999999999999999865  322  36677776654432     44445666666653

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.72  E-value=1.4e-08  Score=61.56  Aligned_cols=43  Identities=9%  Similarity=0.235  Sum_probs=38.2

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .++.++++|++.+.+++++|+|+++||+++|++|+.+   .|.|..
T Consensus        64 ~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v---~~~G~~  106 (120)
T cd03065          64 KGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVI---EYDGEF  106 (120)
T ss_pred             CCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEE---EeeCCC
Confidence            4689999999999999999999999999999999753   388865

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.70  E-value=1.3e-07  Score=64.43  Aligned_cols=88  Identities=7%  Similarity=0.055  Sum_probs=60.6

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccc----cCCccccceEEEcCceeeeceee
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCK----EYDIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~----~~~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      ++++.|| ++||+.|...++.+.+..+++.+.+ +.++.+..+...   ..++    +.+...               +.
T Consensus       100 ~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds~~~h~aw~~~~~~~~g~~~---------------l~  163 (261)
T PTZ00137        100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDSPFSHKAWKELDVRQGGVSP---------------LK  163 (261)
T ss_pred             eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHhhhhhhccccC---------------cc
Confidence            4666666 9999999999999999999998764 777777776532   1111    111112               12


Q ss_pred             EEEEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~  106 (116)
                      + .+-++.+.++++.||+.     ..|+.+++++++++
T Consensus       164 f-PlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I  200 (261)
T PTZ00137        164 F-PLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVV  200 (261)
T ss_pred             e-EEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEE
Confidence            2 23335678899999985     58999999765554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.67  E-value=2.6e-07  Score=68.97  Aligned_cols=96  Identities=18%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC-ce----eee-------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA-LT----IMI-------   69 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~~----v~f-------   69 (116)
                      +.++.|+.+.|..|.++...++++++.- +  ++.+...|..++++++++|++...|++.+++ ++    +.|       
T Consensus       368 v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~  444 (555)
T TIGR03143       368 VTLLLFLDGSNEKSAELQSFLGEFASLS-E--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH  444 (555)
T ss_pred             EEEEEEECCCchhhHHHHHHHHHHHhcC-C--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH
Confidence            3577888889999999999999988554 4  7888889988999999999999999999985 32    566       


Q ss_pred             -------------------------------------------------------------ceeeEEEEeccCccchhhh
Q psy3452          70 -------------------------------------------------------------IRLALAAIDCTEHGPLCKE   88 (116)
Q Consensus        70 -------------------------------------------------------------~~~~~~~v~~~~~~~~~~~   88 (116)
                                                                                   +++..-.++....++++++
T Consensus       445 Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~  524 (555)
T TIGR03143       445 ELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDE  524 (555)
T ss_pred             hHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHh
Confidence                                                                         4677777888899999999


Q ss_pred             cCCCCCCEEEEe
Q psy3452          89 YDIKGYPTFQYF  100 (116)
Q Consensus        89 ~~v~~~Pt~~~~  100 (116)
                      |+|.++|++++-
T Consensus       525 ~~v~~vP~~~i~  536 (555)
T TIGR03143       525 YGIMSVPAIVVD  536 (555)
T ss_pred             CCceecCEEEEC
Confidence            999999999974

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.64  E-value=1.1e-07  Score=63.07  Aligned_cols=73  Identities=15%  Similarity=0.316  Sum_probs=53.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +-|+.|+.+.|+.|..+.|.++.+++.+    .+.+..|+.|....       ..+|                   +...
T Consensus       122 ~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~-------~~fp-------------------~~~~  171 (215)
T PF13728_consen  122 YGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPI-------PSFP-------------------NPRP  171 (215)
T ss_pred             eEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCC-------cCCC-------------------CCCC
Confidence            4689999999999999999999999999    46777776664421       0111                   1122


Q ss_pred             ccchhhhcCCCCCCEEEEecCCc
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      +..++++++|..+|+++|++.+.
T Consensus       172 ~~g~~~~l~v~~~Pal~Lv~~~~  194 (215)
T PF13728_consen  172 DPGQAKRLGVKVTPALFLVNPNT  194 (215)
T ss_pred             CHHHHHHcCCCcCCEEEEEECCC
Confidence            66778888888888888885544

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.64  E-value=1.5e-07  Score=62.45  Aligned_cols=87  Identities=9%  Similarity=0.005  Sum_probs=62.0

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cc----cCCccccceEEEcCceeeeceeeEE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CK----EYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~----~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      +++.||++||+.|...++.+.+..+++.+. ++.++.++++.....   ++    ..++ .+               . .
T Consensus        37 vLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~-~i---------------~-f   98 (215)
T PRK13191         37 VLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKV-EV---------------P-F   98 (215)
T ss_pred             EEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCC-CC---------------c-e
Confidence            445889999999999999999999999766 477888887765431   11    1121 11               1 2


Q ss_pred             EEeccCccchhhhcCCC-------CCCEEEEecCCcccC
Q psy3452          76 AIDCTEHGPLCKEYDIK-------GYPTFQYFHYFNKQS  107 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~-------~~Pt~~~~~~g~~~~  107 (116)
                      .+-++.+.++++.|++.       ..|+.+++++++++.
T Consensus        99 PllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir  137 (215)
T PRK13191         99 PIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVR  137 (215)
T ss_pred             EEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEE
Confidence            34456778999999973       469999997766653

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.59  E-value=7.9e-08  Score=59.02  Aligned_cols=53  Identities=8%  Similarity=0.025  Sum_probs=38.1

Q ss_pred             HHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452          13 GYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        13 ~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +.+....-.++++++++++. .+.++++|.+++++++++|+|+++||+++|++|
T Consensus        49 ~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG  101 (132)
T PRK11509         49 PEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG  101 (132)
T ss_pred             CccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence            44555566778888888642 477777777777777777777777777777775

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.52  E-value=2.2e-07  Score=57.07  Aligned_cols=60  Identities=25%  Similarity=0.376  Sum_probs=39.6

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC---CccccceEEEcCc
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY---DIKGYPTFHHLAL   65 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~   65 (116)
                      -++-|..+|||-|+...|.+.++++..+   ++.+.-+..++++++..+|   +..++|++++++.
T Consensus        44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~  106 (129)
T PF14595_consen   44 NILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK  106 (129)
T ss_dssp             EEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred             EEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence            4566889999999999999999999876   4677666677666655443   5567788777755

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.52  E-value=7.2e-07  Score=49.78  Aligned_cols=56  Identities=25%  Similarity=0.557  Sum_probs=39.6

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeee
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+.|.++...++++.+.++    +.+--+|....+++ .+|++.++|++ +.++.+.|
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPal-vIng~~~~   61 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPAL-VINGKVVF   61 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEE-EETTEEEE
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEE-EECCEEEE
Confidence            68889999999999999988883    44455555555555 88888888888 44554443

...

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.51  E-value=6.9e-07  Score=54.00  Aligned_cols=62  Identities=21%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             eEEEEEEc-------CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------cc--ccCCccccceEEEcCc
Q psy3452           2 FYSILFYS-------PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LC--KEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~--~~~~v~~~Pt~~~~~~   65 (116)
                      +++|.|++       +|||.|++..|.+++..+..++  +..++.+.+..-+.       +-  .+++++++||++-+++
T Consensus        21 ~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~   98 (119)
T PF06110_consen   21 PLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWET   98 (119)
T ss_dssp             EEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTS
T ss_pred             eEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECC
Confidence            46777875       5999999999999998888666  56777666543221       11  1356666666665554

; PDB: 1V9W_A 1WOU_A.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.51  E-value=5.6e-07  Score=61.08  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      .-++.||.+.|+.|.++.|.++.+++.+    .+.+..|+.|....       ..+|                   +..-
T Consensus       152 ~gL~fFy~~~C~~C~~~apil~~fa~~y----gi~v~~VS~DG~~~-------p~fp-------------------~~~~  201 (256)
T TIGR02739       152 YGLFFFYRGKSPISQKMAPVIQAFAKEY----GISVIPISVDGTLI-------PGLP-------------------NSRS  201 (256)
T ss_pred             eeEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-------CCCC-------------------CccC
Confidence            4689999999999999999999999999    47777777765531       1112                   1112


Q ss_pred             ccchhhhcCCCCCCEEEEecCC-cccCCc
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYF-NKQSPS  109 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~  109 (116)
                      +..++++++|..+|+++|++.+ ++..++
T Consensus       202 d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv  230 (256)
T TIGR02739       202 DSGQAQHLGVKYFPALYLVNPKSQKMSPL  230 (256)
T ss_pred             ChHHHHhcCCccCceEEEEECCCCcEEEE
Confidence            5567788888888888888555 343333

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0913|consensus

Probab=98.51  E-value=1.7e-08  Score=66.72  Aligned_cols=63  Identities=27%  Similarity=0.369  Sum_probs=56.0

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|+.|+||||+.|+...|.|+..+.--.+- .+.++++|++.++.+.-+|-+...||+...++|
T Consensus        42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG  104 (248)
T KOG0913|consen   42 WMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG  104 (248)
T ss_pred             HHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence            467899999999999999999988776654 699999999999999999999999999877765

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1.6e-06  Score=54.41  Aligned_cols=83  Identities=19%  Similarity=0.423  Sum_probs=58.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++.++.|-++.|+.|.++...+   .++.+.+.+  ++.+..++.+......-.-|                     ...
T Consensus        43 Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g---------------------~ke   99 (182)
T COG2143          43 KYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVG---------------------DKE   99 (182)
T ss_pred             cEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecC---------------------cee
Confidence            3678899999999999998765   455556665  68888888776543211111                     112


Q ss_pred             eccCccchhhhcCCCCCCEEEEecCC-ccc
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHYF-NKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~  106 (116)
                      ...+..++++.|+|++.||+++++.. +.+
T Consensus       100 e~~s~~ELa~kf~vrstPtfvFfdk~Gk~I  129 (182)
T COG2143         100 EKMSTEELAQKFAVRSTPTFVFFDKTGKTI  129 (182)
T ss_pred             eeecHHHHHHHhccccCceEEEEcCCCCEE
Confidence            23467799999999999999999554 443

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.48  E-value=8.1e-07  Score=58.25  Aligned_cols=94  Identities=7%  Similarity=0.093  Sum_probs=61.5

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc-cCCccccceEEEcCceeeeceeeEEEEec
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK-EYDIKGYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~-~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      +++|.|| ++||+.|....+.+.++.+++.+. ++.++.++++......+ .+..+..       ++  .+.+. ..+-.
T Consensus        38 ~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~-------~~--~~~~~-fpll~  106 (199)
T PTZ00253         38 WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKK-------GG--LGTMA-IPMLA  106 (199)
T ss_pred             EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhh-------CC--ccccc-cceEE
Confidence            6788999 588999999999999999999876 47888887775532111 0100000       00  00111 22334


Q ss_pred             cCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          80 TEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        80 ~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      +.+.++++.|++.      .+|+.+++++.+++
T Consensus       107 D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i  139 (199)
T PTZ00253        107 DKTKSIARSYGVLEEEQGVAYRGLFIIDPKGML  139 (199)
T ss_pred             CcHhHHHHHcCCcccCCCceEEEEEEECCCCEE
Confidence            6788999999985      46999999766553

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.46  E-value=3.3e-07  Score=58.14  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=42.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccC--------CccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEY--------DIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~~   66 (116)
                      ++++|.++++||..|..|....   .++++.++.  ++.-+++|.++.+++.+.|        +.-++|+.+|++++
T Consensus        38 KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPd  112 (163)
T PF03190_consen   38 KPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPD  112 (163)
T ss_dssp             --EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred             CcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCC
Confidence            4799999999999999987643   566777776  7888899999888877766        55567777776654

; PDB: 3IRA_A.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.46  E-value=9.3e-07  Score=60.40  Aligned_cols=64  Identities=17%  Similarity=0.242  Sum_probs=54.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeee
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      .|+|.||-+.++.|..+...|..+++.|+   .+.|+++..+..+ +...|.....||+++|++|..+
T Consensus       148 ~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~  211 (265)
T PF02114_consen  148 WVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLI  211 (265)
T ss_dssp             EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEE
T ss_pred             EEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccC-cccCCcccCCCEEEEEECCEEE
Confidence            58999999999999999999999999999   5999999988766 7889999999999999998443

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.44  E-value=8e-07  Score=60.05  Aligned_cols=79  Identities=9%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +-+++||.+.|+.|.++.|.++.+++.+    .+.+..++.|....       ..+|                   +..-
T Consensus       145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~y----g~~v~~VS~DG~~~-------p~fp-------------------~~~~  194 (248)
T PRK13703        145 YGLMFFYRGQDPIDGQLAQVINDFRDTY----GLSVIPVSVDGVIN-------PLLP-------------------DSRT  194 (248)
T ss_pred             ceEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-------CCCC-------------------CCcc
Confidence            4589999999999999999999999999    47777776664321       1111                   1112


Q ss_pred             ccchhhhcCCCCCCEEEEecCCc-ccCCcC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFN-KQSPSP  110 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~  110 (116)
                      +...+++++|..+|+++|++.+. +..++.
T Consensus       195 d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~  224 (248)
T PRK13703        195 DQGQAQRLGVKYFPALMLVDPKSGSVRPLS  224 (248)
T ss_pred             ChhHHHhcCCcccceEEEEECCCCcEEEEe
Confidence            34455788888888888885543 433433

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.41  E-value=4.5e-07  Score=53.20  Aligned_cols=30  Identities=27%  Similarity=0.680  Sum_probs=26.7

Q ss_pred             EEEEeCCCcccccccCCccccceEEEcCce
Q psy3452          37 LAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        37 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++++|++++++++++++|+++||+++|+++
T Consensus        54 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g   83 (104)
T cd03004          54 VGSVDCQKYESLCQQANIRAYPTIRLYPGN   83 (104)
T ss_pred             EEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence            047899999999999999999999999884

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.39  E-value=8.8e-07  Score=50.36  Aligned_cols=39  Identities=28%  Similarity=0.494  Sum_probs=32.4

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      ++.|+.+||++|.+....++++...+.   .+.+..+|.+++
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~   41 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAE   41 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCC
Confidence            567999999999999999999987654   577778877764

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.39  E-value=7.8e-07  Score=57.70  Aligned_cols=41  Identities=12%  Similarity=0.257  Sum_probs=35.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|.|||+||+.|.+ .+.++++.+++++. .+.++.+.|+
T Consensus        26 KvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~n   66 (183)
T PRK10606         26 NVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCN   66 (183)
T ss_pred             CEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeecc
Confidence            47899999999999975 88999999999876 4888888775

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.30  E-value=1.1e-06  Score=52.78  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=35.6

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPY  111 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y  111 (116)
                      .+.+.++|.+++.+++++|+|++.||+++|++|+.+....-
T Consensus        46 ~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G   86 (114)
T cd02954          46 FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLG   86 (114)
T ss_pred             ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcC
Confidence            46789999999999999999999999999999987644433

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.29  E-value=9.8e-07  Score=52.72  Aligned_cols=37  Identities=14%  Similarity=0.224  Sum_probs=33.5

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+.++.+|.+.+.+++.+|+|++.||+++|++|+.+
T Consensus        60 ~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v   96 (111)
T cd02965          60 GRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYV   96 (111)
T ss_pred             CcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEE
Confidence            3467899999999999999999999999999999765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.28  E-value=7.7e-07  Score=54.68  Aligned_cols=36  Identities=14%  Similarity=0.191  Sum_probs=33.8

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.++++|.+++.+++++|+|+++||+++|++|+.+
T Consensus        69 ~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v  104 (132)
T PRK11509         69 TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR  104 (132)
T ss_pred             ceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence            388999999999999999999999999999999765

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.25  E-value=1.9e-06  Score=50.98  Aligned_cols=59  Identities=22%  Similarity=0.332  Sum_probs=45.9

Q ss_pred             EcCCCHHHHhhhHHH-HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEY-VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~-~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |.+.|..=......+ .++.+.+++.+.+.++++|++++++++++++++++||+++|++|
T Consensus        29 wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g   88 (108)
T cd02996          29 WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNG   88 (108)
T ss_pred             CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCC
Confidence            667787666555444 45555554433799999999999999999999999999999875

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.24  E-value=2.6e-06  Score=46.33  Aligned_cols=51  Identities=20%  Similarity=0.399  Sum_probs=34.0

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC----CccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY----DIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~   62 (116)
                      ++.|+++||++|.++...+++.        .+.+..++.+.+....+.+    +...+|++.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence            5679999999999988877752        3566666666554333322    4566776654

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.23  E-value=9.7e-07  Score=51.25  Aligned_cols=43  Identities=30%  Similarity=0.648  Sum_probs=37.7

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ++.++.+|++.+.+++++|+|+++||++++++|+..  ..|.|..
T Consensus        49 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~--~~~~g~~   91 (103)
T PF00085_consen   49 NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV--KRYNGPR   91 (103)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE--EEEESSS
T ss_pred             ccccchhhhhccchhhhccCCCCCCEEEEEECCcEE--EEEECCC
Confidence            578899999999999999999999999999999775  3676654

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.20  E-value=2.5e-06  Score=49.20  Aligned_cols=43  Identities=14%  Similarity=0.405  Sum_probs=36.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+.++.+|++.+.+++++|+|.++||+++|++|+.+  ..+.|..
T Consensus        44 ~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~--~~~~g~~   86 (96)
T cd02956          44 QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV--DGFQGAQ   86 (96)
T ss_pred             cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe--eeecCCC
Confidence            467899999999999999999999999999987654  4566654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.20  E-value=4.7e-06  Score=44.20  Aligned_cols=50  Identities=24%  Similarity=0.489  Sum_probs=33.3

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~   61 (116)
                      ++.|+.+||++|.+....+++.        .+.+..+|++.+++..    +..+...+|++.
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~   54 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVF   54 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEE
Confidence            4679999999999999888542        4777777777664222    222555555554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.12  E-value=5.8e-06  Score=47.17  Aligned_cols=55  Identities=29%  Similarity=0.423  Sum_probs=37.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCc--cccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDI--KGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v--~~~Pt~~   61 (116)
                      ++.|..+||++|.+....++++...+.   .+.+..+|.+.+.    ++.+..+-  ..+|++.
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if   62 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF   62 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE
Confidence            567899999999999999988765543   3666667766432    33344442  5667663

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>KOG0910|consensus

Probab=98.11  E-value=3.1e-06  Score=52.82  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=35.2

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+.++++|.+++.+++.+|+|+++||+++|++|+++
T Consensus        92 g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~  128 (150)
T KOG0910|consen   92 GKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV  128 (150)
T ss_pred             CeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence            6899999999999999999999999999999999875

>KOG3425|consensus

Probab=98.10  E-value=1.1e-05  Score=48.33  Aligned_cols=42  Identities=19%  Similarity=0.290  Sum_probs=34.3

Q ss_pred             EEEEEEc--------CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           3 YSILFYS--------PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         3 v~v~F~a--------~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++|.|++        ||||.|.+..|.+.+..+..+.  .+.++.+++.+-+
T Consensus        28 ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp   77 (128)
T KOG3425|consen   28 IFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRP   77 (128)
T ss_pred             EEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCC
Confidence            5677774        6999999999999998887766  7888888877654

>KOG0911|consensus

Probab=98.07  E-value=1e-06  Score=58.10  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=56.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ..++.||++||.+|..+...++.+++..+   ++.+++.+.++.++++..+.+..+|++.++..+
T Consensus        19 ~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~   80 (227)
T KOG0911|consen   19 LLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG   80 (227)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence            35788999999999999999999988883   799999999999999999999999999988665

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.05  E-value=6.5e-06  Score=48.26  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=35.4

Q ss_pred             eeeEEEEecc-CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          71 RLALAAIDCT-EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        71 ~~~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      ++.+..+|.+ .+.+++++|+|+++||+++|++| .  ...|.|..+
T Consensus        49 ~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~--~~~~~G~~~   92 (100)
T cd02999          49 QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P--RVRYNGTRT   92 (100)
T ss_pred             cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c--eeEecCCCC
Confidence            3556778887 78899999999999999999888 3  477888753

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG1672|consensus

Probab=98.03  E-value=1.4e-05  Score=51.77  Aligned_cols=62  Identities=18%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      -|++.||-+.-..|+-+...++.+++.+-+   ..|+++++...+-++.+++|+-.|++.+|.++
T Consensus        86 kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g  147 (211)
T KOG1672|consen   86 KVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNG  147 (211)
T ss_pred             eEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEEEEcC
Confidence            378999999999999999999999999884   78999999999999999999999999999998

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.02  E-value=1e-05  Score=47.13  Aligned_cols=19  Identities=42%  Similarity=0.831  Sum_probs=15.5

Q ss_pred             ccccCCccccceEEEcCce
Q psy3452          48 LCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        48 ~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++++++++++||+++++++
T Consensus        67 ~~~~~~i~~~Pt~~~~~~g   85 (104)
T cd02997          67 LKEEYNVKGFPTFKYFENG   85 (104)
T ss_pred             HHHhCCCccccEEEEEeCC
Confidence            5678899999998888874

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.98  E-value=2e-05  Score=44.11  Aligned_cols=51  Identities=27%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-----cccccCCccccceE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-----PLCKEYDIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~   60 (116)
                      ++.|+++||++|..+...++++..      .+.+..++.+.+.     .+.+..+...+|++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v   57 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV   57 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence            467999999999999999987644      2445555554431     22333455556654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>KOG3414|consensus

Probab=97.97  E-value=4.2e-05  Score=46.33  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +.++|-|.-+|-+.|.++...+.++++.+..  -..+.-+|.++-+++.+-|++...||++||=++
T Consensus        24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~   87 (142)
T KOG3414|consen   24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN   87 (142)
T ss_pred             eEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence            3689999999999999999999999999987  567778889999999999999999999866544

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.94  E-value=2.3e-05  Score=43.89  Aligned_cols=34  Identities=26%  Similarity=0.579  Sum_probs=25.6

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      ++.|..+||++|.+....+++.        .+.+..+|++++
T Consensus        10 V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~   43 (79)
T TIGR02190        10 VVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGND   43 (79)
T ss_pred             EEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCC
Confidence            5679999999999999888742        355666666654

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.91  E-value=2.3e-05  Score=43.05  Aligned_cols=49  Identities=16%  Similarity=0.290  Sum_probs=33.6

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC---CccccceEE
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY---DIKGYPTFH   61 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~   61 (116)
                      ..|..++|+.|++....+++.        .+.+..+|.++++...+.+   +...+|++.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~   53 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIV   53 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEE
Confidence            468899999999999888741        4677777777665443322   555666553

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=97.90  E-value=1.3e-05  Score=47.16  Aligned_cols=41  Identities=17%  Similarity=0.330  Sum_probs=32.5

Q ss_pred             eeeEEEEeccCcc---chhhhcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452          71 RLALAAIDCTEHG---PLCKEYDIKGYPTFQYFHYFNKQSPSPYHN  113 (116)
Q Consensus        71 ~~~~~~v~~~~~~---~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g  113 (116)
                      .+.++.+|.+.+.   +++++|+|+++||+++|++|+.+  ..+.|
T Consensus        46 ~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v--~~~~G   89 (103)
T cd02985          46 DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI--HEEEG   89 (103)
T ss_pred             CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE--EEEeC
Confidence            4677888887664   79999999999999999988764  44444

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.89  E-value=2.7e-05  Score=45.68  Aligned_cols=42  Identities=19%  Similarity=0.402  Sum_probs=34.6

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+.++.+|++...+++++|+|+++||+++|++|..   ..|.|..
T Consensus        50 ~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~---~~~~G~~   91 (104)
T cd03000          50 PVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA---YNYRGPR   91 (104)
T ss_pred             cEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc---eeecCCC
Confidence            46788899999999999999999999999976532   4577764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.89  E-value=4.2e-05  Score=41.18  Aligned_cols=35  Identities=31%  Similarity=0.603  Sum_probs=26.6

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++.|.++||++|++....+++.        .+.+..+|.+.+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~   36 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL--------GIEFEEIDILEDG   36 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCcEEEEECCCCH
Confidence            4678999999999999888864        2556666766554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.87  E-value=1.8e-05  Score=47.45  Aligned_cols=44  Identities=20%  Similarity=0.266  Sum_probs=36.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .+.+..+|.+.+.+++++|+|++.||++++++|++.....|.|-
T Consensus        53 ~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~   96 (113)
T cd02975          53 KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL   96 (113)
T ss_pred             ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence            45678889899999999999999999999998766554566663

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK10996 thioredoxin 2; Provisional

Probab=97.87  E-value=2e-05  Score=48.93  Aligned_cols=43  Identities=12%  Similarity=0.213  Sum_probs=35.6

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .++.++.+|.+.+.+++++|+|.++||+++|++|+.+  ..+.|.
T Consensus        83 ~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v--~~~~G~  125 (139)
T PRK10996         83 GKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV--DMLNGA  125 (139)
T ss_pred             CCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE--EEEcCC
Confidence            4678899999999999999999999999999988764  344443

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.81  E-value=3.3e-05  Score=57.92  Aligned_cols=54  Identities=22%  Similarity=0.276  Sum_probs=49.3

Q ss_pred             EEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         6 ~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      -|.+++|++|.+....+++++...+   ++..--+|....++++++|+|.++|++++
T Consensus       482 v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i  535 (555)
T TIGR03143       482 IGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV  535 (555)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEEE
Confidence            4679999999999999999998876   58899999999999999999999999986

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.81  E-value=6.1e-05  Score=44.14  Aligned_cols=50  Identities=16%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------ccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~   61 (116)
                      ++.|..+|||+|.+....+++.        .+.+..+|++++++       +.+..+...+|.+.
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf   66 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF   66 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence            4569999999999998877753        34444555554432       22333556777763

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=97.80  E-value=7.4e-05  Score=44.49  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=33.3

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-------ccccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-------GPLCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~   61 (116)
                      ++.|..+|||+|++....+++..-..+     .+..+|.++.       ..+.+..+.+.+|+++
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If   74 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF   74 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE
Confidence            567999999999999988876532221     2334444431       2344455666777774

>TIGR01068 thioredoxin thioredoxin

Probab=97.80  E-value=4.4e-05  Score=43.94  Aligned_cols=36  Identities=17%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.++.+|++.+..++++|+|.++||++++++|+.+
T Consensus        46 ~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~   81 (101)
T TIGR01068        46 KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV   81 (101)
T ss_pred             CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence            578899999999999999999999999999887653

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.79  E-value=3.6e-05  Score=42.93  Aligned_cols=48  Identities=21%  Similarity=0.420  Sum_probs=31.0

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceE
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTF   60 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~   60 (116)
                      ..|+.+||+.|.+....+++.        .+.+..+|++.++..    .+..+...+|++
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i   53 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI   53 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence            568899999999999888752        355555566555432    222344556655

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.78  E-value=0.00037  Score=42.62  Aligned_cols=64  Identities=17%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEc-Cce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL-ALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~~   66 (116)
                      +.++|-|..+|-+.|.++...+.++++..+.  -..+..+|.++-+++.+.|.+...=|++|| ++.
T Consensus        21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnk   85 (133)
T PF02966_consen   21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNK   85 (133)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTE
T ss_pred             eEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccCCCeEEEEEecCe
Confidence            4689999999999999999999999999987  678889999999999999999955556666 664

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PRK09381 trxA thioredoxin; Provisional

Probab=97.77  E-value=4.3e-05  Score=45.09  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=34.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.++.+|++.+..++++|+|+++||+++|++|+.+  ..+.|.
T Consensus        53 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~--~~~~G~   94 (109)
T PRK09381         53 KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGA   94 (109)
T ss_pred             CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE--EEecCC
Confidence            467899999999999999999999999999888653  344443

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.75  E-value=6.4e-05  Score=55.89  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      +--|.++.|++|......+++++...+   ++..-.+|....++++++|++.++|++++
T Consensus       120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i  175 (517)
T PRK15317        120 FETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALFQDEVEARNIMAVPTVFL  175 (517)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence            556999999999999999999988765   68999999999999999999999999975

>PHA02278 thioredoxin-like protein

Probab=97.75  E-value=3.2e-05  Score=45.69  Aligned_cols=35  Identities=11%  Similarity=0.112  Sum_probs=29.6

Q ss_pred             eeEEEEeccCc----cchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEH----GPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ..+..+|.+.+    .+++++|+|++.||+++|++|+.+
T Consensus        47 ~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v   85 (103)
T PHA02278         47 KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV   85 (103)
T ss_pred             ceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence            45677887765    579999999999999999999765

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.75  E-value=8.2e-05  Score=40.90  Aligned_cols=35  Identities=29%  Similarity=0.499  Sum_probs=26.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++.|+.+||+.|.+....+++.        .+.+..+|++.++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~   36 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDP   36 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCH
Confidence            4678999999999998888752        4666667776654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.75  E-value=3.2e-05  Score=46.17  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+.++|++.+ +++++|+|+++||+++|++|+.+
T Consensus        55 ~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v   89 (113)
T cd02957          55 ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELI   89 (113)
T ss_pred             CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEE
Confidence            567889999888 99999999999999999998764

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.74  E-value=9.3e-05  Score=40.69  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=33.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~   61 (116)
                      ++.|..+||+.|++....+++.        .+.+..+|+++++.    +.+..+...+|+++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~   56 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIF   56 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            4678899999999999888852        46677777776653    22333445556553

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.74  E-value=3.9e-05  Score=45.97  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+.++|.+++.+++++|+|.+.||+++|++|+.+
T Consensus        53 ~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v   88 (113)
T cd02989          53 ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV   88 (113)
T ss_pred             CCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence            568899999999999999999999999999999754

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>KOG0912|consensus

Probab=97.73  E-value=6.9e-05  Score=51.91  Aligned_cols=47  Identities=21%  Similarity=0.432  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452          19 KPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ...-+++.+++++ +++.+++|||+.+..++.+|.|..+||+.+|++|
T Consensus        36 ~EAa~~~~~e~P~-~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG   82 (375)
T KOG0912|consen   36 EEAAAKFKQEFPE-GKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNG   82 (375)
T ss_pred             HHHHHHHHHhCCC-cceEEEEcccchhhHHhhhhccccCceeeeeecc
Confidence            3455677888887 4899999999999999999999999999999998

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.71  E-value=4.4e-05  Score=51.06  Aligned_cols=36  Identities=33%  Similarity=0.480  Sum_probs=32.4

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      +.+.++.+|++++.+++++|+|+++||+++|++|+.
T Consensus        83 ~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~  118 (224)
T PTZ00443         83 GQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKM  118 (224)
T ss_pred             CCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEE
Confidence            347789999999999999999999999999998865

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.69  E-value=8.2e-05  Score=48.62  Aligned_cols=99  Identities=15%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-ccc--cc-ccCCccccc--eEE-EcCceeeeceeeE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-HGP--LC-KEYDIKGYP--TFH-HLALTIMIIRLAL   74 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~--~~-~~~~v~~~P--t~~-~~~~~v~f~~~~~   74 (116)
                      ..++.|..+.|++|+++.+.+.+    ..+.-.+.+..+.... ...  .+ +-+.... |  .+. ...++..-.....
T Consensus        79 ~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d-~~~a~~~~~~~~~~~~~~~~  153 (197)
T cd03020          79 RVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKD-RAKAWTDAMSGGKVPPPAAS  153 (197)
T ss_pred             EEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccC-HHHHHHHHHhCCCCCCCccc
Confidence            46788999999999999998876    1221134444333322 110  00 0000000 0  000 0000000000111


Q ss_pred             EEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          75 AAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ...+...+.+++++++|++.||++ +++|..+
T Consensus       154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~  184 (197)
T cd03020         154 CDNPVAANLALGRQLGVNGTPTIV-LADGRVV  184 (197)
T ss_pred             cCchHHHHHHHHHHcCCCcccEEE-ECCCeEe
Confidence            222334777899999999999997 7677554

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PTZ00051 thioredoxin; Provisional

Probab=97.68  E-value=3.6e-05  Score=44.46  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        49 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~   84 (98)
T PTZ00051         49 KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV   84 (98)
T ss_pred             CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence            467788999999999999999999999999988654

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.68  E-value=0.00016  Score=41.07  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe--CCCcc----cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID--CTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd--~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +..|+.+.|++|..+.+.++++.+..++  ++.+....  .....    ..+.+......-           ........
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~   67 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAA-----------QGKFEALH   67 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHH-----------cCcHHHHH
Confidence            4679999999999999999998866555  44544443  33321    100000000000           00000000


Q ss_pred             eccCccchhhhcCCCCCCEEEEec
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFH  101 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~  101 (116)
                      +..++.+.+++.|+.+.||+++.+
T Consensus        68 ~~l~~~~~~~~~g~~g~Pt~v~~~   91 (98)
T cd02972          68 EALADTALARALGVTGTPTFVVNG   91 (98)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEECC
Confidence            111677899999999999999886

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.67  E-value=0.00016  Score=40.79  Aligned_cols=51  Identities=10%  Similarity=0.229  Sum_probs=36.7

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~   62 (116)
                      +..|..+||++|......+++     .   .+.+-.+|.+++++..   ...+...+|+++.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~---gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i   56 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----R---GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA   56 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----C---CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence            456889999999998888864     1   5778888888766432   2345667887754

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=97.67  E-value=5.5e-05  Score=43.55  Aligned_cols=37  Identities=19%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ..+.+..+|++...+++++|+|+++||+++|++|+.+
T Consensus        45 ~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          45 PSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             CceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence            3578889999999999999999999999999887653

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=97.67  E-value=4.2e-05  Score=48.24  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCC------CCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKG------YPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~------~Pt~~~~~~g~~~  106 (116)
                      ++.++++|++++.+++++|+|++      +||+++|++|+.+
T Consensus        80 ~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v  121 (152)
T cd02962          80 NLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEV  121 (152)
T ss_pred             CeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence            47889999999999999999988      9999999998765

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=6.6e-05  Score=51.75  Aligned_cols=37  Identities=16%  Similarity=0.331  Sum_probs=35.3

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+..++|||+.+..++..|+|++.||+++|.+|.-+
T Consensus        74 G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV  110 (304)
T COG3118          74 GKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV  110 (304)
T ss_pred             CceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc
Confidence            7899999999999999999999999999999999876

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.66  E-value=5.5e-05  Score=43.84  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|.+++.++.++++|.++||++++++|+.+
T Consensus        45 ~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v   80 (97)
T cd02949          45 AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV   80 (97)
T ss_pred             ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence            467788999999999999999999999999887654

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.66  E-value=5.8e-05  Score=42.29  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=32.6

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      +++.++.++++.+.++++++++.++||++++++|+.
T Consensus        40 ~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~   75 (93)
T cd02947          40 PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKE   75 (93)
T ss_pred             CCceEEEEECCCChhHHHhcCcccccEEEEEECCEE
Confidence            467889999999999999999999999999988864

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.66  E-value=0.00077  Score=50.21  Aligned_cols=84  Identities=12%  Similarity=0.048  Sum_probs=63.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee--------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI--------   69 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f--------   69 (116)
                      +|-+.++.+.|..|.++...++++++.-+   ++.+...+..           ...|++.+++++    +.|        
T Consensus        20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E   85 (517)
T PRK15317         20 PIELVASLDDSEKSAELKELLEEIASLSD---KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE   85 (517)
T ss_pred             CEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence            34455556689999999999999888764   5665432211           347999888753    555        


Q ss_pred             ------------------------------------------------------------ceeeEEEEeccCccchhhhc
Q psy3452          70 ------------------------------------------------------------IRLALAAIDCTEHGPLCKEY   89 (116)
Q Consensus        70 ------------------------------------------------------------~~~~~~~v~~~~~~~~~~~~   89 (116)
                                                                                  +++....+|....++++.+|
T Consensus        86 f~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~  165 (517)
T PRK15317         86 FTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEAR  165 (517)
T ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhc
Confidence                                                                        67888888989999999999


Q ss_pred             CCCCCCEEEE
Q psy3452          90 DIKGYPTFQY   99 (116)
Q Consensus        90 ~v~~~Pt~~~   99 (116)
                      +|.++|++++
T Consensus       166 ~v~~VP~~~i  175 (517)
T PRK15317        166 NIMAVPTVFL  175 (517)
T ss_pred             CCcccCEEEE
Confidence            9999999986

>KOG4277|consensus

Probab=97.65  E-value=4.2e-05  Score=53.02  Aligned_cols=42  Identities=24%  Similarity=0.546  Sum_probs=37.1

Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.++++||...+.++.+|+|++|||+.+++++--   ..|.|..+
T Consensus        79 ikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a---~dYRG~R~  120 (468)
T KOG4277|consen   79 IKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA---IDYRGGRE  120 (468)
T ss_pred             eeecccccccchhhHhhhccCCCceEEEecCCee---eecCCCcc
Confidence            7889999999999999999999999999988744   78888653

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.63  E-value=0.0002  Score=39.16  Aligned_cols=35  Identities=26%  Similarity=0.530  Sum_probs=25.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++.|..+||+.|.+....+++.        .+.+..+|.+++.
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~   37 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDI   37 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCCh
Confidence            5678999999999998887742        4566666666544

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=97.56  E-value=1.3e-05  Score=51.68  Aligned_cols=35  Identities=31%  Similarity=0.531  Sum_probs=25.9

Q ss_pred             EEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452           6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         6 ~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      .|.-|.|+.|-...|.+.++..+++.  .+.+-.+-.
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~   36 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPG   36 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE-
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEc
Confidence            58899999999999999999999988  555554433

>KOG0907|consensus

Probab=97.56  E-value=5.6e-05  Score=44.87  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.+.++|.++..+++++++|+..||++++++|+++
T Consensus        51 ~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~   87 (106)
T KOG0907|consen   51 PDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV   87 (106)
T ss_pred             CCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE
Confidence            3588999999999999999999999999999999764

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.56  E-value=7.5e-05  Score=43.47  Aligned_cols=28  Identities=21%  Similarity=0.628  Sum_probs=25.5

Q ss_pred             EEeCCCcccccccCCccccceEEEcCce
Q psy3452          39 AIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        39 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++|+++++.++++++++++||+++|++|
T Consensus        55 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   82 (101)
T cd03003          55 AVNCGDDRMLCRSQGVNSYPSLYVFPSG   82 (101)
T ss_pred             EEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence            5788999999999999999999999875

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00048  Score=43.62  Aligned_cols=85  Identities=12%  Similarity=0.138  Sum_probs=62.9

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +|+++|| ..+++-|...+-.+++...+++.. +..++.|..+..   +.+++++++. +|                  +
T Consensus        32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~-f~------------------L   91 (157)
T COG1225          32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLT-FP------------------L   91 (157)
T ss_pred             cEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCC-ce------------------e
Confidence            5788888 889999999999999998888876 477777776654   5667776654 22                  2


Q ss_pred             eccCccchhhhcCCC------------CCCEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIK------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~------------~~Pt~~~~~~g~~~  106 (116)
                      -.+.+.++++.|+|-            .-++.++++++++|
T Consensus        92 LSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I  132 (157)
T COG1225          92 LSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKI  132 (157)
T ss_pred             eECCcHHHHHHhCcccccccCccccccccceEEEECCCCeE
Confidence            236778899999983            34778888776554

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=97.51  E-value=0.00014  Score=42.62  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+..++.+ +.+++++|+|+++||+++|++|+.+
T Consensus        51 ~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~   84 (102)
T cd02948          51 LHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELV   84 (102)
T ss_pred             EEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEE
Confidence            567888888 7789999999999999999988654

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.47  E-value=0.00011  Score=44.11  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.8

Q ss_pred             EeCCCccccc-ccCCccccceEEEcCce
Q psy3452          40 IDCTEHGPLC-KEYDIKGYPTFHHLALT   66 (116)
Q Consensus        40 vd~~~~~~~~-~~~~v~~~Pt~~~~~~~   66 (116)
                      +|++++.+++ ++|+|+++||+++|+++
T Consensus        67 Vd~d~~~~l~~~~~~I~~~PTl~lf~~g   94 (113)
T cd03006          67 INCWWPQGKCRKQKHFFYFPVIHLYYRS   94 (113)
T ss_pred             EECCCChHHHHHhcCCcccCEEEEEECC
Confidence            4889999898 58999999999999875

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=97.45  E-value=0.0017  Score=41.43  Aligned_cols=78  Identities=23%  Similarity=0.318  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee------------------------
Q psy3452          18 AKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI------------------------   69 (116)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f------------------------   69 (116)
                      ....+.++++.+.+  .+.++.+.   +.++++++++.. |++++++++    +.|                        
T Consensus         8 ~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~   81 (184)
T PF13848_consen    8 LFEIFEEAAEKLKG--DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPE   81 (184)
T ss_dssp             HHHHHHHHHHHHTT--TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEE
T ss_pred             HHHHHHHHHHhCcC--CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccc
Confidence            45678899999987  57777775   566788899988 999988873    111                        


Q ss_pred             --------------------------------------------ceeeEEEEeccCccchhhhcCCC--CCCEEEEec
Q psy3452          70 --------------------------------------------IRLALAAIDCTEHGPLCKEYDIK--GYPTFQYFH  101 (116)
Q Consensus        70 --------------------------------------------~~~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~~~  101 (116)
                                                                  +.+.++-+|+.....+.+.++++  ..|++++++
T Consensus        82 ~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~  159 (184)
T PF13848_consen   82 LTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFD  159 (184)
T ss_dssp             ESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred             cchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence                                                        56899999999888999999998  999999996

...

>PRK10638 glutaredoxin 3; Provisional

Probab=97.45  E-value=0.00039  Score=39.18  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTF   60 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~   60 (116)
                      |.-++.|..+||++|.+....+++.        .+.+..+|++.+++    +.+..+...+|++
T Consensus         1 m~~v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i   56 (83)
T PRK10638          1 MANVEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI   56 (83)
T ss_pred             CCcEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            4456778899999999999888852        35566667665542    2233344556655

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.40  E-value=0.00019  Score=48.33  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAE   27 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~   27 (116)
                      .+++.|.-+.||+|+++.+.+.++.+
T Consensus       109 ~~I~vFtDp~CpyCkkl~~~l~~~~~  134 (232)
T PRK10877        109 HVITVFTDITCGYCHKLHEQMKDYNA  134 (232)
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHhc
Confidence            46788999999999999999887643

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.39  E-value=0.00037  Score=51.85  Aligned_cols=56  Identities=16%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      +--|.++.|++|......+.+++...+   ++..-.+|....++++.+|++.++|++++
T Consensus       121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i  176 (515)
T TIGR03140       121 FETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL  176 (515)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence            556899999999999999999888876   68888899999999999999999999985

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.37  E-value=0.003  Score=47.07  Aligned_cols=85  Identities=15%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee---------
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI---------   69 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f---------   69 (116)
                      |-+.++.+.|..|.++...++++++.-+   ++.+...+.+.          ...|++.+++++    +.|         
T Consensus        21 v~~~~~~~~~~~~~~~~~~~~~~~~~s~---ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef   87 (515)
T TIGR03140        21 VTLVLSAGSHEKSKELLELLDEIASLSD---KISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHEF   87 (515)
T ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhCC---CeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHHH
Confidence            4444455579999999999999887764   56664433221          345898887654    555         


Q ss_pred             -----------------------------------------------------------ceeeEEEEeccCccchhhhcC
Q psy3452          70 -----------------------------------------------------------IRLALAAIDCTEHGPLCKEYD   90 (116)
Q Consensus        70 -----------------------------------------------------------~~~~~~~v~~~~~~~~~~~~~   90 (116)
                                                                                 +++....+|....++++.+|+
T Consensus        88 ~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~  167 (515)
T TIGR03140        88 TSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALG  167 (515)
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcC
Confidence                                                                       577777788889999999999


Q ss_pred             CCCCCEEEEe
Q psy3452          91 IKGYPTFQYF  100 (116)
Q Consensus        91 v~~~Pt~~~~  100 (116)
                      +.++|++++-
T Consensus       168 v~~VP~~~i~  177 (515)
T TIGR03140       168 IQGVPAVFLN  177 (515)
T ss_pred             CcccCEEEEC
Confidence            9999999873

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.34  E-value=0.00023  Score=41.33  Aligned_cols=40  Identities=18%  Similarity=0.156  Sum_probs=33.7

Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      ++.+|++.+..++++|+|+++||++++++|+.   ..|.|..+
T Consensus        52 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~---~~~~G~~~   91 (101)
T cd02994          52 VAKVDVTQEPGLSGRFFVTALPTIYHAKDGVF---RRYQGPRD   91 (101)
T ss_pred             EEEEEccCCHhHHHHcCCcccCEEEEeCCCCE---EEecCCCC
Confidence            46889999999999999999999999988752   57888653

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.00067  Score=38.17  Aligned_cols=51  Identities=25%  Similarity=0.491  Sum_probs=32.2

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-----cccccC-CccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-----PLCKEY-DIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~   62 (116)
                      ++.|..++||+|++....+++.        .+.+..++.+...     +..++- +.+.+|.+.+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            4568899999999998888732        4555555555444     222233 5566666653

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.33  E-value=0.00028  Score=45.48  Aligned_cols=36  Identities=11%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+.+.+++++.. .++.+|+|.+.||+++|++|+.+
T Consensus       113 ~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v  148 (175)
T cd02987         113 PAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELI  148 (175)
T ss_pred             CCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEE
Confidence            6789999998876 89999999999999999999754

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.33  E-value=0.00055  Score=38.53  Aligned_cols=54  Identities=28%  Similarity=0.513  Sum_probs=43.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      ++.|..+.|+-|..+...++++....    .+.+..+|.++++++.++|+. .+|.+.+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~   55 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHI   55 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEE
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEE
Confidence            67899999999999998888765444    588999999999999999995 6886654

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.31  E-value=0.00069  Score=40.83  Aligned_cols=58  Identities=12%  Similarity=0.325  Sum_probs=35.4

Q ss_pred             CeEEEEEEcC----CCHHHHhhh--HHHHHHHHHhccCcceEEEEEeCCCcc--cccccCCccccceEEEc
Q psy3452           1 MFYSILFYSP----GCGYCKKAK--PEYVKAAEVLKDNHKVALAAIDCTEHG--PLCKEYDIKGYPTFHHL   63 (116)
Q Consensus         1 ~~v~v~F~a~----wC~~C~~~~--~~~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~   63 (116)
                      ++++|+++++    ||..|+...  |.+.+   -++.  ++.+...|++..+  +++..++++++|++.++
T Consensus        18 K~llVylhs~~~~~~~~fc~~~l~~~~v~~---~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l   83 (116)
T cd02991          18 RFLLVYLHGDDHQDTDEFCRNTLCAPEVIE---YINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMI   83 (116)
T ss_pred             CEEEEEEeCCCCccHHHHHHHHcCCHHHHH---HHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence            4689999999    889997664  33333   3333  5677777665443  34444555555555444

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=97.30  E-value=0.0004  Score=41.70  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.++.+|.++.+++++.|+|++.||+++|++|+.+
T Consensus        47 ~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986          47 ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             eEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence            78899999999999999999999999999998754

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=97.29  E-value=0.00029  Score=40.77  Aligned_cols=28  Identities=39%  Similarity=0.926  Sum_probs=25.1

Q ss_pred             EEeCCCcccccccCCccccceEEEcCce
Q psy3452          39 AIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        39 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++|++++..++++++++++||+++++++
T Consensus        56 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (102)
T cd03005          56 KVDCTQHRELCSEFQVRGYPTLLLFKDG   83 (102)
T ss_pred             EEECCCChhhHhhcCCCcCCEEEEEeCC
Confidence            3688999999999999999999999875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.29  E-value=0.00019  Score=42.71  Aligned_cols=39  Identities=8%  Similarity=0.050  Sum_probs=32.0

Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+|++++..++++++|+++||+++|++|+.+  ..+.|.
T Consensus        60 ~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~--~~~~G~   98 (111)
T cd02963          60 IATVNAGHERRLARKLGAHSVPAIVGIINGQVT--FYHDSS   98 (111)
T ss_pred             EEEEeccccHHHHHHcCCccCCEEEEEECCEEE--EEecCC
Confidence            478899999999999999999999999988653  344554

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.18  E-value=0.0063  Score=36.90  Aligned_cols=45  Identities=29%  Similarity=0.511  Sum_probs=29.5

Q ss_pred             eeeEEEEecc-----CccchhhhcCC--CCCCEEEEecCCcccCCcCC--CCCCC
Q psy3452          71 RLALAAIDCT-----EHGPLCKEYDI--KGYPTFQYFHYFNKQSPSPY--HNDYT  116 (116)
Q Consensus        71 ~~~~~~v~~~-----~~~~~~~~~~v--~~~Pt~~~~~~g~~~~~~~y--~g~~~  116 (116)
                      ++.++.|...     .|.+++++|++  ..+|.+.||. |+...++.|  .|+.|
T Consensus        54 dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~-~~~~~pv~~p~~~~~t  107 (126)
T PF07912_consen   54 DLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFV-GDKEEPVRYPFDGDVT  107 (126)
T ss_dssp             SEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEE-SSTTSEEEE-TCS-S-
T ss_pred             ceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEec-CCCCCCccCCccCCcc
Confidence            4555555322     67889999999  6789999998 444468877  77654

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=97.15  E-value=0.0021  Score=40.60  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=55.7

Q ss_pred             eEEEEEEcCCCHHHHhh-hHHHHHHHHHhccCcce-EEEEEeCCCc---ccccccCCcc-ccceEEEcCceeeeceeeEE
Q psy3452           2 FYSILFYSPGCGYCKKA-KPEYVKAAEVLKDNHKV-ALAAIDCTEH---GPLCKEYDIK-GYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~-~~~~~~~~~~~~~~~~~-~~~~vd~~~~---~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      .+++.|.+.||+.|... .+.+.+..+++...+ + .++.+..+..   .+.++++++. .+                  
T Consensus        32 vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~~~~~~~~~~~~~~~~f------------------   92 (155)
T cd03013          32 VVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDPFVMKAWGKALGAKDKI------------------   92 (155)
T ss_pred             EEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCHHHHHHHHHhhCCCCcE------------------
Confidence            45566669999999998 999999999987654 4 4666666544   3345555441 22                  


Q ss_pred             EEeccCccchhhhcCCC-----------CCCEEEEecCC
Q psy3452          76 AIDCTEHGPLCKEYDIK-----------GYPTFQYFHYF  103 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g  103 (116)
                      .+-.+.+.++++.||+.           ...+.+++++|
T Consensus        93 ~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g  131 (155)
T cd03013          93 RFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDG  131 (155)
T ss_pred             EEEECCCHHHHHHcCCCccccccCCcceeeeEEEEECCC
Confidence            23345678899999873           13566777754

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.15  E-value=0.0013  Score=37.71  Aligned_cols=43  Identities=19%  Similarity=0.385  Sum_probs=27.4

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTF   60 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~   60 (116)
                      +||++|.+....+++.        .+.+..+|.+++.++    .+..+...+|.+
T Consensus        21 ~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v   67 (90)
T cd03028          21 PRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL   67 (90)
T ss_pred             CCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence            7999999998888764        355666666555432    223344556655

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=97.15  E-value=0.0011  Score=48.09  Aligned_cols=54  Identities=17%  Similarity=0.328  Sum_probs=39.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc------------cCCccccceEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK------------EYDIKGYPTFHH   62 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~------------~~~v~~~Pt~~~   62 (116)
                      |..++.|..+|||+|.+....+++.        .+.+..+|+++++...+            +.+.+.+|++.+
T Consensus         1 m~~V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          1 MVEVRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            5557789999999999998888762        46777788876653221            246678898865

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.14  E-value=0.0016  Score=40.18  Aligned_cols=29  Identities=34%  Similarity=0.616  Sum_probs=25.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLK   30 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~   30 (116)
                      ++++.|+.++|++|+++.|.+.++...++
T Consensus         7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             EEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            57889999999999999999999877764

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.14  E-value=0.0013  Score=38.35  Aligned_cols=44  Identities=18%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceEE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTFH   61 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~   61 (116)
                      +|||+|.+....+++.        ++.+..+|.+++++.    .+..+...+|.+.
T Consensus        25 ~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf   72 (97)
T TIGR00365        25 PQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY   72 (97)
T ss_pred             CCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence            8999999998888763        456667777655432    2233444556553

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=97.04  E-value=0.0027  Score=40.45  Aligned_cols=60  Identities=22%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc--ccceEEEcC
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK--GYPTFHHLA   64 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~   64 (116)
                      +++.|.........++...++++++.+.+  ++.++.+|++..+.+++.+++.  ..|++++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~  159 (184)
T PF13848_consen   98 VLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFPRLLKYFGIDEDDLPALVIFD  159 (184)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred             EEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence            67777777788888999999999999987  7999999999989999999998  899999877

...

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.04  E-value=0.00064  Score=38.70  Aligned_cols=53  Identities=26%  Similarity=0.559  Sum_probs=41.0

Q ss_pred             EcCCCHHHHhhhHHHHHHH---HHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAA---EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~---~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |.++|..-......+.+..   ..+      .++.+|++++..++++++++.+||+++++++
T Consensus        26 ~C~~C~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961          26 WCGHCKALAPEYEKLAKELKGDGKV------VVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             CCHHHHhhhHHHHHHHHHhccCCce------EEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            5677877776665554444   334      4688899999999999999999999998875

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.00  E-value=0.00071  Score=39.16  Aligned_cols=27  Identities=26%  Similarity=0.677  Sum_probs=24.8

Q ss_pred             EeCCCcccccccCCccccceEEEcCce
Q psy3452          40 IDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        40 vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|++++++++++++++++||+++++++
T Consensus        56 id~~~~~~~~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001          56 VDADVHQSLAQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             EECcchHHHHHHCCCCccCEEEEECCC
Confidence            588899999999999999999999875

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.93  E-value=0.0015  Score=37.88  Aligned_cols=36  Identities=17%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             ceeeEEEEeccCccchhhhcCCC--CCCEEEEecC--Ccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIK--GYPTFQYFHY--FNK  105 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~  105 (116)
                      +.+.++.+|++++..+++.|++.  ++|+++++++  |++
T Consensus        43 ~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k   82 (103)
T cd02982          43 GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK   82 (103)
T ss_pred             CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc
Confidence            46889999999999999999999  9999999988  544

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=96.89  E-value=0.00097  Score=39.07  Aligned_cols=19  Identities=32%  Similarity=0.871  Sum_probs=16.9

Q ss_pred             ccccCCccccceEEEcCce
Q psy3452          48 LCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        48 ~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++++++++++||+++|+++
T Consensus        66 ~~~~~~i~~~Pt~~~~~~~   84 (109)
T cd03002          66 LCGKYGVQGFPTLKVFRPP   84 (109)
T ss_pred             HHHHcCCCcCCEEEEEeCC
Confidence            5788999999999999875

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.86  E-value=0.0048  Score=36.51  Aligned_cols=63  Identities=19%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCcc-ccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIK-GYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~-~~Pt~~~~~~~   66 (116)
                      +++|+=.++.|+-.......+++..+..++  .+.+.-+|+-+..    .++++++|+ ..|.++++++|
T Consensus        21 ~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g   88 (105)
T PF11009_consen   21 PVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNG   88 (105)
T ss_dssp             EEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETT
T ss_pred             cEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECC
Confidence            567777799999999999999999888876  4888888887765    456677776 57777777764

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=96.76  E-value=0.0013  Score=37.78  Aligned_cols=30  Identities=27%  Similarity=0.569  Sum_probs=27.3

Q ss_pred             EEEEeCCCcccccccCCccccceEEEcCce
Q psy3452          37 LAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        37 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++.+|++++..+++++++.++|++++++++
T Consensus        50 ~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126        50 LAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             EEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            468899999999999999999999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.73  E-value=0.00084  Score=39.87  Aligned_cols=33  Identities=12%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             eEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ..+-+.-..+.++..+|++..+|+++++++|+.
T Consensus        62 ~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~   94 (107)
T PF07449_consen   62 RGAVVARAAERALAARFGVRRWPALVFFRDGRY   94 (107)
T ss_dssp             EEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEE
T ss_pred             ceEEECchhHHHHHHHhCCccCCeEEEEECCEE
Confidence            334445567778888888888888888888754

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=96.68  E-value=0.0021  Score=37.15  Aligned_cols=56  Identities=20%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-cccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-HGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |.+.|..=......+.+..+....-.-   +.+|++. ++.++++++++++|++++|+++
T Consensus        29 ~C~~C~~~~~~~~~~~~~~~~~~~~~~---~~id~~~~~~~~~~~~~i~~~P~~~~~~~~   85 (105)
T cd02998          29 WCGHCKNLAPEYEKLAAVFANEDDVVI---AKVDADEANKDLAKKYGVSGFPTLKFFPKG   85 (105)
T ss_pred             CCHHHHhhChHHHHHHHHhCCCCCEEE---EEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence            455665544444444333321111112   3578888 8999999999999999998864

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=96.68  E-value=0.011  Score=36.84  Aligned_cols=42  Identities=21%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++.|....|++|.++.+.+.++.+++-+.+.+.+......
T Consensus        14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~   55 (162)
T PF13462_consen   14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP   55 (162)
T ss_dssp             EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred             eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence            578999999999999999999999999833336777777653

...

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=96.61  E-value=0.012  Score=32.36  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      +.+..|-+...+...+....+.++.+.+-+ +...+--+|..+++++++.+++-.+||++
T Consensus         2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLv   60 (72)
T cd02978           2 YVLRLYVAGRTPKSERALQNLKRILEELLG-GPYELEVIDVLKQPQLAEEDKIVATPTLV   60 (72)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHHHHhcC-CcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence            456667777778999988999999888763 37889999999999999999999999986

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=96.60  E-value=0.0033  Score=39.26  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=29.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEE-EecCCc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQ-YFHYFN  104 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~-~~~~g~  104 (116)
                      .+.+.++|.++++++++.|+|++.||++ +|++|+
T Consensus        55 ~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~   89 (142)
T PLN00410         55 FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH   89 (142)
T ss_pred             ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence            4677999999999999999999776666 888887

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.54  E-value=0.0051  Score=39.06  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID   41 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd   41 (116)
                      +.++.|+...||+|+.+.+.+.++.+++++  .+.+....
T Consensus        17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~   54 (178)
T cd03019          17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVP   54 (178)
T ss_pred             cEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcC
Confidence            578999999999999999999999998866  45544333

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=96.41  E-value=0.0046  Score=38.47  Aligned_cols=34  Identities=18%  Similarity=0.422  Sum_probs=24.9

Q ss_pred             eeEEEEecc--CccchhhhcCCCCCCEEEEec-CCcc
Q psy3452          72 LALAAIDCT--EHGPLCKEYDIKGYPTFQYFH-YFNK  105 (116)
Q Consensus        72 ~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~-~g~~  105 (116)
                      +.+..++.+  ...+++++|+|+++||+++|+ +|+.
T Consensus        53 ~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~   89 (142)
T cd02950          53 VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE   89 (142)
T ss_pred             eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence            345555544  345789999999999999996 5544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=96.41  E-value=0.0054  Score=33.93  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=25.6

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEE
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQY   99 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   99 (116)
                      .+.+..+|.+++.+++++++++++||+++
T Consensus        31 ~~~~~~vd~~~~~~~~~~~~v~~vPt~~~   59 (82)
T TIGR00411        31 AVEVEYINVMENPQKAMEYGIMAVPAIVI   59 (82)
T ss_pred             ceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence            35678889889999999999999999986

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=96.34  E-value=0.005  Score=36.32  Aligned_cols=26  Identities=19%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             eCCC-cccccc-cCCccccceEEEcCce
Q psy3452          41 DCTE-HGPLCK-EYDIKGYPTFHHLALT   66 (116)
Q Consensus        41 d~~~-~~~~~~-~~~v~~~Pt~~~~~~~   66 (116)
                      |++. +..++. .++++.+||+++|+++
T Consensus        61 d~d~~~~~~~~~~~~v~~~Pti~~f~~~   88 (109)
T cd02993          61 NADGEQREFAKEELQLKSFPTILFFPKN   88 (109)
T ss_pred             ECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence            4554 455665 5999999999999874

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.31  E-value=0.0068  Score=32.37  Aligned_cols=29  Identities=24%  Similarity=0.435  Sum_probs=25.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEE
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQY   99 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   99 (116)
                      ++.+..+|.+.+.++++++++.++||+++
T Consensus        30 ~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973          30 NISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            46677888888889999999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG1752|consensus

Probab=96.20  E-value=0.02  Score=33.86  Aligned_cols=36  Identities=25%  Similarity=0.503  Sum_probs=25.7

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +|-|..+||+.|..+...|.+    +..  +..++.+|-..+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~   51 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDED   51 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCC
Confidence            456999999999997777665    332  566667766544

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=96.19  E-value=0.0075  Score=36.03  Aligned_cols=57  Identities=23%  Similarity=0.510  Sum_probs=35.7

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--CcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |.+-|..=......+.+..+...+.-.+  +.+|++  .++.++++++++++||+++|+++
T Consensus        30 wC~~C~~~~~~~~~la~~~~~~~~~v~~--~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~   88 (114)
T cd02992          30 WCGHCRAFAPTWKKLARDLRKWRPVVRV--AAVDCADEENVALCRDFGVTGYPTLRYFPPF   88 (114)
T ss_pred             CCHHHHHHhHHHHHHHHHHHhcCCceEE--EEEeccchhhHHHHHhCCCCCCCEEEEECCC
Confidence            4445544333333343333333333333  667765  46789999999999999999885

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.12  E-value=0.011  Score=35.83  Aligned_cols=36  Identities=14%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             eeeEEEEeccC-------ccchhhhcCCC-CCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTE-------HGPLCKEYDIK-GYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~-------~~~~~~~~~v~-~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|.+.       +.++.++++|. +.||++++++|+++
T Consensus        60 ~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l  103 (119)
T cd02952          60 DCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRL  103 (119)
T ss_pred             CCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCcee
Confidence            46778888764       45899999998 99999999888765

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=96.08  E-value=0.02  Score=35.19  Aligned_cols=49  Identities=18%  Similarity=0.188  Sum_probs=38.0

Q ss_pred             hhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc--ccceEEEcCce
Q psy3452          17 KAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK--GYPTFHHLALT   66 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~~   66 (116)
                      +....+.++++.++++ .+.|+.+|.++...+.+.+++.  .+|++++++..
T Consensus        41 ~~~~~l~~vAk~~kgk-~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~   91 (130)
T cd02983          41 KYLEILKSVAEKFKKK-PWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFR   91 (130)
T ss_pred             HHHHHHHHHHHHhcCC-cEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecc
Confidence            4567889999999883 2888888888888788888875  47887766653

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.04  E-value=0.085  Score=30.07  Aligned_cols=33  Identities=21%  Similarity=0.471  Sum_probs=21.0

Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.++++++++. -|++++|++... ....|.|+++
T Consensus        54 ~~~~~~~~~~~-~~~i~l~~~~~~-~~~~y~g~~~   86 (97)
T cd02981          54 DKEVAKKLKVK-PGSVVLFKPFEE-EPVEYDGEFT   86 (97)
T ss_pred             hHHHHHHcCCC-CCceEEeCCccc-CCccCCCCCC
Confidence            45566666664 488888876522 3467888754

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=96.04  E-value=0.0072  Score=34.63  Aligned_cols=33  Identities=15%  Similarity=0.045  Sum_probs=27.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ++.+..+|.+...+++++|+|.+.||+++  +|+.
T Consensus        43 ~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~   75 (89)
T cd03026          43 NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL   75 (89)
T ss_pred             CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE
Confidence            56778888888899999999999999975  4543

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG2603|consensus

Probab=96.01  E-value=0.016  Score=40.45  Aligned_cols=61  Identities=18%  Similarity=0.409  Sum_probs=38.2

Q ss_pred             EEEEEEc----CCCHHHHhhhHHHHHHHHHhccCc------ceEEEEEeCCCcccccccCCccccceEEEc
Q psy3452           3 YSILFYS----PGCGYCKKAKPEYVKAAEVLKDNH------KVALAAIDCTEHGPLCKEYDIKGYPTFHHL   63 (116)
Q Consensus         3 v~v~F~a----~wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   63 (116)
                      +++.|.|    ..|+-|+.+..+++-++.....+.      ++-|..||.++.++.-+.+++...|++.+|
T Consensus        63 ~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f  133 (331)
T KOG2603|consen   63 LIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLF  133 (331)
T ss_pred             EEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEe
Confidence            4666765    469999999999999988875432      344444444444444444444444444444

>PRK10824 glutaredoxin-4; Provisional

Probab=95.99  E-value=0.015  Score=35.07  Aligned_cols=45  Identities=20%  Similarity=0.357  Sum_probs=27.1

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHH   62 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~   62 (116)
                      ||||.|.+....+.+..        +.+..+|.+++.+    +.+.-+...+|.+.+
T Consensus        28 p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824         28 PSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             CCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            69999999988887642        3333445554432    233345556776653

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=95.84  E-value=0.0081  Score=42.59  Aligned_cols=44  Identities=11%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      .++.++.+|...+..+++++|+...+++++|++|..   ++|.|.++
T Consensus        89 ~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~---IEydG~~s  132 (383)
T PF01216_consen   89 KGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEV---IEYDGERS  132 (383)
T ss_dssp             CTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEE---EEE-S--S
T ss_pred             cCcceEEeccHHHHHHHHhcCccccCcEEEEECCcE---EEecCccC
Confidence            468899999999999999999999999999999877   78888753

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=95.80  E-value=0.0094  Score=39.04  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=28.7

Q ss_pred             eceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          69 IIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        69 f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      |..+.|.+++.+.   ....|++++.||+++|++|+.+
T Consensus       131 ~~~vkFvkI~ad~---~~~~~~i~~lPTlliyk~G~~v  165 (192)
T cd02988         131 FPDTKFVKIISTQ---CIPNYPDKNLPTILVYRNGDIV  165 (192)
T ss_pred             CCCCEEEEEEhHH---hHhhCCCCCCCEEEEEECCEEE
Confidence            3568889988764   3579999999999999999654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0908|consensus

Probab=95.75  E-value=0.01  Score=40.33  Aligned_cols=36  Identities=19%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +..|.+||.++-...+..+||...||+++|++|.++
T Consensus        52 ~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ki   87 (288)
T KOG0908|consen   52 GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKI   87 (288)
T ss_pred             ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEe
Confidence            677899999999999999999999999999999876

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=95.74  E-value=0.035  Score=33.12  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=36.8

Q ss_pred             HHHHhhhHHHHHHHHHhc-cCcceEEEEEeCCCcccccccCCccc----cceEEEcC
Q psy3452          13 GYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKG----YPTFHHLA   64 (116)
Q Consensus        13 ~~C~~~~~~~~~~~~~~~-~~~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~   64 (116)
                      ..-......+.++++.++ +  ++.|+.+|.++.....+.+|++.    .|++.+.+
T Consensus        31 ~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~   85 (111)
T cd03073          31 KGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRT   85 (111)
T ss_pred             hHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEe
Confidence            444567889999999998 6  68888888887766677777763    66665443

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=95.68  E-value=0.018  Score=37.92  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEe
Q psy3452           2 FYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAID   41 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd   41 (116)
                      +.+++|+.-.|++|.++.+.+   +.+.+.+++  .+.+..+.
T Consensus        39 ~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~   79 (207)
T PRK10954         39 PQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYH   79 (207)
T ss_pred             CeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEec
Confidence            468999999999999999866   788888876  34444433

>KOG1731|consensus

Probab=95.68  E-value=0.019  Score=43.16  Aligned_cols=34  Identities=41%  Similarity=0.869  Sum_probs=30.2

Q ss_pred             ceeeEEEEecc--CccchhhhcCCCCCCEEEEecCC
Q psy3452          70 IRLALAAIDCT--EHGPLCKEYDIKGYPTFQYFHYF  103 (116)
Q Consensus        70 ~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g  103 (116)
                      +.+.++.+||.  .|..+|++|+|++|||+-+|+.+
T Consensus        91 ~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~  126 (606)
T KOG1731|consen   91 PVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPD  126 (606)
T ss_pred             ceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCc
Confidence            46788999988  78889999999999999999765

>KOG3170|consensus

Probab=95.57  E-value=0.074  Score=35.15  Aligned_cols=59  Identities=15%  Similarity=0.230  Sum_probs=48.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|+|..|...-+.|.-+...++.++..|+   .++|+++-.+..   ..-|--...||+++|..|
T Consensus       113 wVvvhLy~~gvp~c~Ll~~~l~~la~kfp---~iKFVki~at~c---IpNYPe~nlPTl~VY~~G  171 (240)
T KOG3170|consen  113 WVVVHLYKQGVPLCALLSHHLQSLACKFP---QIKFVKIPATTC---IPNYPESNLPTLLVYHHG  171 (240)
T ss_pred             EEEEEeeccccHHHHHHHHHHHHHhhcCC---cceEEecccccc---cCCCcccCCCeEEEeecc
Confidence            68999999999999999999999999999   588888754433   223445678999988877

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=95.49  E-value=0.067  Score=30.58  Aligned_cols=59  Identities=20%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      +++=.|.+..-+.+++....+.++.+.+-.. ...+--+|..+++++++.+++-.+||++
T Consensus         4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLI   62 (87)
T TIGR02654         4 YVLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLS   62 (87)
T ss_pred             EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence            4555677888889999888998887766544 5888889999999999999999999987

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=95.46  E-value=0.018  Score=33.05  Aligned_cols=55  Identities=16%  Similarity=0.237  Sum_probs=33.7

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |.++|..=......+.+..+....-.-   +++|++++ +++..+++.++||+++++++
T Consensus        29 ~C~~C~~~~~~~~~~~~~~~~~~~~~~---~~id~~~~-~~~~~~~~~~~Pt~~~~~~~   83 (104)
T cd02995          29 WCGHCKALAPIYEELAEKLKGDDNVVI---AKMDATAN-DVPSEFVVDGFPTILFFPAG   83 (104)
T ss_pred             CCHHHHHHhhHHHHHHHHhcCCCCEEE---EEEeCcch-hhhhhccCCCCCEEEEEcCC
Confidence            455565554444444444333211112   34777776 47788899999999999875

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PHA02125 thioredoxin-like protein

Probab=95.35  E-value=0.018  Score=31.67  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.1

Q ss_pred             eEEEEeccCccchhhhcCCCCCCEEE
Q psy3452          73 ALAAIDCTEHGPLCKEYDIKGYPTFQ   98 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~~~Pt~~   98 (116)
                      .+..+|.+.+.+++++|+|+++||++
T Consensus        26 ~~~~vd~~~~~~l~~~~~v~~~PT~~   51 (75)
T PHA02125         26 TYVDVDTDEGVELTAKHHIRSLPTLV   51 (75)
T ss_pred             eEEeeeCCCCHHHHHHcCCceeCeEE
Confidence            45778888889999999999999987

>PTZ00062 glutaredoxin; Provisional

Probab=95.34  E-value=0.016  Score=38.30  Aligned_cols=29  Identities=10%  Similarity=0.253  Sum_probs=24.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQS  107 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~  107 (116)
                      .+.+..++.+        |+|.++||+++|++|+.+.
T Consensus        48 ~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~   76 (204)
T PTZ00062         48 SLEFYVVNLA--------DANNEYGVFEFYQNSQLIN   76 (204)
T ss_pred             CcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence            5677888755        9999999999999998763

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=95.33  E-value=0.015  Score=34.62  Aligned_cols=60  Identities=8%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             EEEEEcCCCHHHHhhhH---HHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           4 SILFYSPGCGYCKKAKP---EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+.|.+..|..+.+...   .+-++.+.+++  .+..+-++...+..+..+|++...|+++|+++
T Consensus        29 ~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~   91 (107)
T PF07449_consen   29 AVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPALVFFRD   91 (107)
T ss_dssp             EEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEEEEEET
T ss_pred             EEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeEEEEEC
Confidence            45677777766555443   67788888887  67777778778889999999999999999998

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=95.32  E-value=0.0065  Score=36.63  Aligned_cols=23  Identities=17%  Similarity=0.262  Sum_probs=20.5

Q ss_pred             CcccccccCCcc--ccceEEEcCce
Q psy3452          44 EHGPLCKEYDIK--GYPTFHHLALT   66 (116)
Q Consensus        44 ~~~~~~~~~~v~--~~Pt~~~~~~~   66 (116)
                      ++.+++++|+|+  ++||+++|+++
T Consensus        66 ~~~~L~~~y~I~~~gyPTl~lF~~g   90 (116)
T cd03007          66 LNMELGERYKLDKESYPVIYLFHGG   90 (116)
T ss_pred             hhHHHHHHhCCCcCCCCEEEEEeCC
Confidence            567899999999  99999999975

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG3171|consensus

Probab=95.27  E-value=0.086  Score=35.22  Aligned_cols=61  Identities=13%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++|..|-+.-+-|-++...+.-++..|+   .++|.++-.+.. ....+|....+||+++|++|
T Consensus       161 ~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~-gas~~F~~n~lP~LliYkgG  221 (273)
T KOG3171|consen  161 TIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNT-GASDRFSLNVLPTLLIYKGG  221 (273)
T ss_pred             EEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccc-cchhhhcccCCceEEEeeCC
Confidence            46788999999999999999999999998   688888865433 34678888899999999988

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=95.23  E-value=0.11  Score=30.96  Aligned_cols=48  Identities=10%  Similarity=-0.041  Sum_probs=36.7

Q ss_pred             HHhhhHHHHHHHHH---hccCcceEEEEEeCCCcccccccCCccc--cceEEEcC
Q psy3452          15 CKKAKPEYVKAAEV---LKDNHKVALAAIDCTEHGPLCKEYDIKG--YPTFHHLA   64 (116)
Q Consensus        15 C~~~~~~~~~~~~~---~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~   64 (116)
                      -.+....++++++.   +++  ++.|+.+|.+......+.+|++.  .|.+.+.+
T Consensus        29 ~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~   81 (111)
T cd03072          29 LESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLPVIAIDS   81 (111)
T ss_pred             HHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCCEEEEEc
Confidence            35678889999999   777  78888888888777777888875  67666443

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=95.11  E-value=0.094  Score=30.89  Aligned_cols=60  Identities=20%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      +++=.|.+..-+..++....+.++.+.+-.. ...+--+|..+++.+++.+++-.+||++-
T Consensus         7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK   66 (103)
T PRK09301          7 YILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAK   66 (103)
T ss_pred             EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhh
Confidence            4566778888889999888999887766554 58888999999999999999999999873

>KOG2640|consensus

Probab=95.08  E-value=0.0025  Score=44.29  Aligned_cols=99  Identities=21%  Similarity=0.349  Sum_probs=67.7

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe-CCCcccccccCCccccceEEEcCce--------------e
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID-CTEHGPLCKEYDIKGYPTFHHLALT--------------I   67 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~~--------------v   67 (116)
                      +-+.||++||+..+...|.++-....+..   +....++ ...-+...+++++...|++++.+..              +
T Consensus        79 vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~sLv  155 (319)
T KOG2640|consen   79 VSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLASLV  155 (319)
T ss_pred             ccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHHHHH
Confidence            45679999999999999999888877762   4444443 3344678899999999999988877              2


Q ss_pred             ee-ceee-----EEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          68 MI-IRLA-----LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        68 ~f-~~~~-----~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      .| .++.     .-..|+.. --.--+|+..+.||+..-++|..
T Consensus       156 ~fy~~i~~~~v~ie~~d~~~-~~~~~ry~~~~~~t~l~~p~~~~  198 (319)
T KOG2640|consen  156 NFYTEITPMSVLIEILDCTS-CLEPVRYVPEGGPTILLAPDGNL  198 (319)
T ss_pred             HHHHhhccchhcccccCccc-ceeeeEeccccCcccccCcCCCc
Confidence            22 1111     11223333 13334688889999988877754

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=94.85  E-value=0.059  Score=32.83  Aligned_cols=34  Identities=15%  Similarity=0.099  Sum_probs=25.1

Q ss_pred             eeeEEEEeccCccchhh--------hcCCCCCCEEEEecCCc
Q psy3452          71 RLALAAIDCTEHGPLCK--------EYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~--------~~~v~~~Pt~~~~~~g~  104 (116)
                      .+....+|.+++.++.+        .|++.++||+++++..+
T Consensus        50 ~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G   91 (124)
T cd02955          50 NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL   91 (124)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence            45667778777776655        35899999999995543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PLN02309 5'-adenylylsulfate reductase

Probab=94.72  E-value=0.031  Score=41.31  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             eCC-Ccccccc-cCCccccceEEEcCce
Q psy3452          41 DCT-EHGPLCK-EYDIKGYPTFHHLALT   66 (116)
Q Consensus        41 d~~-~~~~~~~-~~~v~~~Pt~~~~~~~   66 (116)
                      |++ .+..++. +++|+++||+++|+++
T Consensus       405 D~d~~~~~la~~~~~I~~~PTil~f~~g  432 (457)
T PLN02309        405 RADGDQKEFAKQELQLGSFPTILLFPKN  432 (457)
T ss_pred             ECCCcchHHHHhhCCCceeeEEEEEeCC
Confidence            566 5566775 6999999999999865

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=94.51  E-value=0.06  Score=32.59  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=17.2

Q ss_pred             chhhhcC----CCCCCEEEEecCCccc
Q psy3452          84 PLCKEYD----IKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        84 ~~~~~~~----v~~~Pt~~~~~~g~~~  106 (116)
                      ++.++|+    |.+.||+++|++|+.+
T Consensus        77 ~~~~~~~i~~~i~~~PT~v~~k~Gk~v  103 (122)
T TIGR01295        77 AFRSRFGIPTSFMGTPTFVHITDGKQV  103 (122)
T ss_pred             HHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence            3445554    5569999999999775

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.37  E-value=0.058  Score=41.43  Aligned_cols=64  Identities=17%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCC--------ccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYD--------IKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~--------v~~~Pt~~~~~~~   66 (116)
                      +|+++-...+||-.|.-|..+=   .++++.++.  ++.-++||.++-+++-+.|.        --++|.-+|++++
T Consensus        44 kPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd  118 (667)
T COG1331          44 KPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPD  118 (667)
T ss_pred             CCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCC
Confidence            4789999999999999887543   677788877  79999999999988766654        3468888888775

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=94.30  E-value=0.055  Score=31.69  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=24.1

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      ..|+.++|+.|++....+++.        .+.+..+|..++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~   34 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKE   34 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccC
Confidence            468899999999988777752        455666666543

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=93.84  E-value=0.2  Score=31.52  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=33.6

Q ss_pred             EEEEEcC------CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCc----cccceEEE
Q psy3452           4 SILFYSP------GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDI----KGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v----~~~Pt~~~   62 (116)
                      ++.|.++      +|+.|.+....|+..        .+.+..+|++.+.+    +.+..+.    ..+|.+.+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            3456677      899999988888753        47777888876643    3333333    56776653

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=93.65  E-value=0.22  Score=29.89  Aligned_cols=32  Identities=13%  Similarity=0.330  Sum_probs=21.2

Q ss_pred             EEEEeccCcc-chhhhcCCCC--CCEEEEec-CCcc
Q psy3452          74 LAAIDCTEHG-PLCKEYDIKG--YPTFQYFH-YFNK  105 (116)
Q Consensus        74 ~~~v~~~~~~-~~~~~~~v~~--~Pt~~~~~-~g~~  105 (116)
                      +..++.+.+. ...+.|++.+  +||+++++ +|+.
T Consensus        54 fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~   89 (117)
T cd02959          54 FVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV   89 (117)
T ss_pred             EEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence            3444444333 4567899986  99999996 5544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=93.40  E-value=0.29  Score=34.99  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=41.9

Q ss_pred             EEEEEEcCCCHHHHh-----hhH-HHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           3 YSILFYSPGCGYCKK-----AKP-EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         3 v~v~F~a~wC~~C~~-----~~~-~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ..|+|+.+--..-..     +.. .++-.++.+..+ .+.+.-||..++..+++++|+...+++.+|+++
T Consensus        54 l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~-gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~  122 (383)
T PF01216_consen   54 LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDK-GIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDG  122 (383)
T ss_dssp             EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGC-TEEEEEEETTTTHHHHHHHT--STTEEEEEETT
T ss_pred             EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcccc-CcceEEeccHHHHHHHHhcCccccCcEEEEECC
Confidence            456677666322221     122 233345555444 699999999999999999999999999999988

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=93.24  E-value=0.27  Score=30.13  Aligned_cols=44  Identities=11%  Similarity=0.220  Sum_probs=32.6

Q ss_pred             eeEEEEeccCccchhhhcCCC--CCCEEEEecCCcccCCcCCCCCCC
Q psy3452          72 LALAAIDCTEHGPLCKEYDIK--GYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.+.-+|..+...+.+.||++  ++|++++++..+. .-..+.|++|
T Consensus        58 i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t  103 (130)
T cd02983          58 WGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFS  103 (130)
T ss_pred             EEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccC-ccccccCccC
Confidence            678888988888899999995  4999999966542 1233667654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=93.14  E-value=0.2  Score=30.75  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=24.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      +..|..++|+.|++....+++-        .+.+..+|..+++
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~~   36 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSSP   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCCh
Confidence            4568899999999988777642        3566666665543

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=93.09  E-value=0.48  Score=31.13  Aligned_cols=88  Identities=10%  Similarity=0.102  Sum_probs=57.5

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------ccccCCccccceEEEcCceeeeceee
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LCKEYDIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      ++++.|| ++--.-|-.....+.+...+++.. ++.++.+++|..-.       +.+..++..+               .
T Consensus        35 w~VLff~P~DFTfVCpTEi~af~~~y~eF~~~-g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i---------------~   98 (194)
T COG0450          35 WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR-GVEVIGVSTDSVFSHKAWKATIREAGGIGKI---------------K   98 (194)
T ss_pred             EEEEEeccCCCCccCcchHHHHHhhhHHHHHc-CCEEEEEecCcHHHHHHHHhcHHhcCCccce---------------e
Confidence            4556666 566677777888898888888877 46777777665421       1223444322               2


Q ss_pred             EEEEeccCccchhhhcCCCC------CCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIKG------YPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~------~Pt~~~~~~g~~~  106 (116)
                       ..+-++.+.++++.|++-.      .-.++++++.+.+
T Consensus        99 -~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~i  136 (194)
T COG0450          99 -FPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVI  136 (194)
T ss_pred             -cceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeE
Confidence             3445578899999998753      4567888666654

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=93.08  E-value=0.074  Score=30.08  Aligned_cols=54  Identities=20%  Similarity=0.225  Sum_probs=44.4

Q ss_pred             EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      |-+..-+........++.+.+.+-+. .+.+--+|..+++++++.+++-.+||++
T Consensus         3 yV~g~~~~s~~a~~~l~~l~~~~l~~-~~~LeVIDv~~~P~lAe~~~ivAtPtLi   56 (82)
T PF07689_consen    3 YVAGRTPSSERAIENLRRLCEEYLGG-RYELEVIDVLEQPELAEEDRIVATPTLI   56 (82)
T ss_dssp             EESSBHHHHHHHHHHHHHHHHCHCTT-TEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHHHhhCCC-cEEEEEEEcccCHhHHhHCCeeecceEe
Confidence            45556667778888888888875443 7999999999999999999999999886

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>KOG0914|consensus

Probab=92.89  E-value=0.1  Score=34.94  Aligned_cols=38  Identities=18%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             ceeeEEEEeccCccchhhhcCCC------CCCEEEEecCCcccC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQS  107 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~~  107 (116)
                      ..++++++|.....+.+.+|+|+      ..||+.+|.+|+.+.
T Consensus       176 ~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~  219 (265)
T KOG0914|consen  176 NLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVS  219 (265)
T ss_pred             CCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhh
Confidence            45788999988899999999875      679999999997653

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=92.85  E-value=0.25  Score=24.52  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=26.1

Q ss_pred             eeeEEEEeccCccchhh---hcCCCCCCEEEEecCC
Q psy3452          71 RLALAAIDCTEHGPLCK---EYDIKGYPTFQYFHYF  103 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~---~~~v~~~Pt~~~~~~g  103 (116)
                      ++.+..++++......+   .+++.+.|+++++++|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659          28 GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            56777788776666554   7899999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=92.62  E-value=0.23  Score=29.54  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=24.9

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ..|..++|+.|++....+++-        .+.+..+|..+++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~   35 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEP   35 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCc
Confidence            458899999999988777752        4666667665543

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=92.26  E-value=0.27  Score=29.00  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=23.7

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      ..|+.++|+.|++....+++-        .+.+..+|..++
T Consensus         2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~   34 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKD   34 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccC
Confidence            468899999999988777652        355556665544

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=92.10  E-value=0.16  Score=37.77  Aligned_cols=53  Identities=13%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             EcCCCHHHHhhhHHHHHHH-HH-hccCcceEEEEEeCCCcc-cc-cccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAA-EV-LKDNHKVALAAIDCTEHG-PL-CKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~-~~-~~~~~~~~~~~vd~~~~~-~~-~~~~~v~~~Pt~~~~~~~   66 (116)
                      |.+.|..=......+.+-. .. ..   -..+   |++.++ .+ +++++|+++||+++|+++
T Consensus       382 WC~~Ck~m~P~~eelA~~~~~~~v~---~~kV---dvD~~~~~~~~~~~~I~~~PTii~Fk~g  438 (463)
T TIGR00424       382 WCPFCQAMEASYLELAEKLAGSGVK---VAKF---RADGDQKEFAKQELQLGSFPTILFFPKH  438 (463)
T ss_pred             CChHHHHHHHHHHHHHHHhccCCcE---EEEE---ECCCCccHHHHHHcCCCccceEEEEECC
Confidence            5566765544444443332 22 21   2223   334332 34 468999999999999875

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=92.06  E-value=0.96  Score=29.98  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=41.8

Q ss_pred             CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhc-cCc-ceEEEEEeCCCc---ccccccCCc-cccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLK-DNH-KVALAAIDCTEH---GPLCKEYDI-KGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~-~~~-~~~~~~vd~~~~---~~~~~~~~v-~~~Pt~~~~~~   65 (116)
                      ++++|.|.=+.|+. |-.+...+..+.+++. ..+ .+.++.+.+|.+   ++..++|.. ...|.+..+++
T Consensus        68 k~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg  139 (207)
T COG1999          68 KPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTG  139 (207)
T ss_pred             CEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeC
Confidence            47889898888865 8888888888888777 333 444444444433   445556666 55565555444

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=91.85  E-value=0.25  Score=26.53  Aligned_cols=51  Identities=18%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-ccccccCCccccceEE
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-GPLCKEYDIKGYPTFH   61 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~   61 (116)
                      +.|+.+||+.|++..-.+.+..-      .+....+|.... +++.+......+|++.
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~   53 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV   53 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence            35788999999998766664321      344455554322 2333333444667664

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.68  E-value=0.49  Score=26.33  Aligned_cols=21  Identities=29%  Similarity=0.263  Sum_probs=18.4

Q ss_pred             EEEEcCCCHHHHhhhHHHHHH
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      +.|+|.-||.|..+..+++++
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl   25 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERL   25 (85)
T ss_pred             eeeccccCcchHHHHHHHHHc
Confidence            679999999999988888865

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=91.38  E-value=0.85  Score=29.26  Aligned_cols=45  Identities=13%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             CeEEEEEEcCCC-HHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCc
Q psy3452           1 MFYSILFYSPGC-GYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEH   45 (116)
Q Consensus         1 ~~v~v~F~a~wC-~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~   45 (116)
                      ++++|.|.=+.| ..|-.....+.++.+.+...+ ++.++.+..|..
T Consensus        53 k~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~   99 (174)
T PF02630_consen   53 KWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE   99 (174)
T ss_dssp             SEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred             CeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence            468899999999 459888888888888877643 577777766644

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PRK12559 transcriptional regulator Spx; Provisional

Probab=91.26  E-value=0.52  Score=28.94  Aligned_cols=34  Identities=18%  Similarity=0.441  Sum_probs=23.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +..|..++|+.|++....+++-        .+.+..+|..++
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~   35 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSN   35 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCC
Confidence            4568899999999988766642        355555555544

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=91.20  E-value=0.26  Score=33.98  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=28.0

Q ss_pred             eeeceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          67 IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        67 v~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      -.|..+.|.++....-. +...|.+...||+++|++|..
T Consensus       173 ~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l  210 (265)
T PF02114_consen  173 RKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDL  210 (265)
T ss_dssp             HH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEE
T ss_pred             HhCCceEEEEEehhccC-cccCCcccCCCEEEEEECCEE
Confidence            33478889988866444 778999999999999999854

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=91.20  E-value=0.3  Score=26.87  Aligned_cols=29  Identities=7%  Similarity=-0.079  Sum_probs=20.5

Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      +.+..++   +.+.+.++++.+.||+++  +|+.
T Consensus        31 ~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~   59 (76)
T TIGR00412        31 AEFEKVT---DMNEILEAGVTATPGVAV--DGEL   59 (76)
T ss_pred             eEEEEeC---CHHHHHHcCCCcCCEEEE--CCEE
Confidence            3445555   344577899999999999  6644

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=91.10  E-value=0.36  Score=28.51  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=19.1

Q ss_pred             CccchhhhcCCCCCCEEEEecC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHY  102 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~  102 (116)
                      +..++++.|++.++|++++++.
T Consensus        64 e~~~~~~~~~~~~~P~~~~i~~   85 (114)
T cd02958          64 EGQRFLQSYKVDKYPHIAIIDP   85 (114)
T ss_pred             cHHHHHHHhCccCCCeEEEEeC
Confidence            4557889999999999999965

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=91.07  E-value=0.33  Score=25.03  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=16.4

Q ss_pred             EEEEcCCCHHHHhhhHHHHHH
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      ..|+.++|+.|.+..-.++..
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~   22 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEK   22 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHc
Confidence            357789999999888777654

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=90.85  E-value=0.33  Score=29.02  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=25.2

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ..|+.++|+.|++....+++-        .+.+..+|..+++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCCh
Confidence            357899999999998877761        4666677766543

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=90.80  E-value=0.7  Score=27.53  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=24.0

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +..|+.++|+.|++....+++.        .+.+..+|..++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~   35 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQ   35 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCC
Confidence            3467899999999988777752        355556665544

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=90.52  E-value=0.46  Score=32.42  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=21.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAE   27 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~   27 (116)
                      .+++.|.-+.|++|+++.+.+.++.+
T Consensus       119 ~~I~vFtDp~CpyC~kl~~~l~~~~~  144 (251)
T PRK11657        119 RIVYVFADPNCPYCKQFWQQARPWVD  144 (251)
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHhh
Confidence            46778999999999999988877544

>smart00594 UAS UAS domain

Probab=90.28  E-value=0.58  Score=28.12  Aligned_cols=10  Identities=20%  Similarity=0.737  Sum_probs=3.7

Q ss_pred             CCccccceEE
Q psy3452          52 YDIKGYPTFH   61 (116)
Q Consensus        52 ~~v~~~Pt~~   61 (116)
                      +++.++|++.
T Consensus        82 ~~~~~~P~~~   91 (122)
T smart00594       82 YKLDSFPYVA   91 (122)
T ss_pred             cCcCCCCEEE
Confidence            3333333333

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=0.13  Score=32.73  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             CcccccccCCccccceEEEcCce
Q psy3452          44 EHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        44 ~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +.+++++.++++++||++|+++.
T Consensus       103 s~~ELa~kf~vrstPtfvFfdk~  125 (182)
T COG2143         103 STEELAQKFAVRSTPTFVFFDKT  125 (182)
T ss_pred             cHHHHHHHhccccCceEEEEcCC
Confidence            44689999999999999999975

>PHA03075 glutaredoxin-like protein; Provisional

Probab=89.66  E-value=0.49  Score=28.50  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=24.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHh
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVL   29 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~   29 (116)
                      .++|.|..|-|+-|......+.++..+|
T Consensus         3 ~tLILfGKP~C~vCe~~s~~l~~ledeY   30 (123)
T PHA03075          3 KTLILFGKPLCSVCESISEALKELEDEY   30 (123)
T ss_pred             ceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence            5799999999999999998887777666

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=89.50  E-value=1.5  Score=29.99  Aligned_cols=56  Identities=16%  Similarity=0.099  Sum_probs=35.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ++.+++..+.|||.|...+=.+-..-.++.   ++.+.....+.      ...--.+||++|..-
T Consensus        59 k~~v~~igw~gCP~~A~~sW~L~~ALsrfG---n~~l~~~~S~~------~d~~pn~Ptl~F~~~  114 (249)
T PF06053_consen   59 KPEVIFIGWEGCPYCAAESWALYIALSRFG---NFSLEYHYSDP------YDNYPNTPTLIFNNY  114 (249)
T ss_pred             eeEEEEEecccCccchhhHHHHHHHHHhcC---CeeeEEeecCc------ccCCCCCCeEEEecC
Confidence            367888999999999988755555555565   34222221111      111247899998887

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=89.28  E-value=0.45  Score=25.30  Aligned_cols=21  Identities=14%  Similarity=0.159  Sum_probs=16.7

Q ss_pred             EEEEcCCCHHHHhhhHHHHHH
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      ..|+.++|+.|++.+-.+.+.
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~   22 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEK   22 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHc
Confidence            357789999999988777654

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=89.05  E-value=1.7  Score=23.67  Aligned_cols=21  Identities=14%  Similarity=0.368  Sum_probs=16.4

Q ss_pred             EEEEcCCCHHHHhhhHHHHHH
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      ..++.++|+.|.+.+-.+++.
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~   23 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTEL   23 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHc
Confidence            457788999999987777653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=88.95  E-value=1.2  Score=27.47  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +..|..++|+.|++....+++-        .+.+..+|..++
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~   35 (132)
T PRK13344          2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKE   35 (132)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCC
Confidence            3467899999999987666641        466666666544

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=88.81  E-value=0.89  Score=24.23  Aligned_cols=19  Identities=26%  Similarity=0.439  Sum_probs=15.5

Q ss_pred             EEEcCCCHHHHhhhHHHHH
Q psy3452           6 LFYSPGCGYCKKAKPEYVK   24 (116)
Q Consensus         6 ~F~a~wC~~C~~~~~~~~~   24 (116)
                      .++.++|+.|.+.+-.+..
T Consensus         3 Ly~~~~~p~~~rvr~~L~~   21 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGL   21 (71)
T ss_pred             eEecCCCcHhHHHHHHHHH
Confidence            5778999999998877664

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=88.09  E-value=0.25  Score=28.52  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             EcCCCHHHHhhh---HHHHHHHH-HhccCcceEEEE-EeCCCcccccccCCccccceEEEcCc
Q psy3452           8 YSPGCGYCKKAK---PEYVKAAE-VLKDNHKVALAA-IDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         8 ~a~wC~~C~~~~---~~~~~~~~-~~~~~~~~~~~~-vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      |.++|..=....   +.+.+..+ .+.   .+.+-. .+-.....+++++++.++||+++|++
T Consensus        22 wC~~C~~~~~~~~~~~~~~~~~~~~~~---~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~   81 (104)
T cd02953          22 WCVTCKVNEKVVFSDPEVQAALKKDVV---LLRADWTKNDPEITALLKRFGVFGPPTYLFYGP   81 (104)
T ss_pred             hhHHHHHHHHHhcCCHHHHHHHhCCeE---EEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence            566776554322   44443333 333   222222 23334578899999999999999984

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=87.55  E-value=0.26  Score=29.52  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             CcccccccCCccccceEEEcCce
Q psy3452          44 EHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        44 ~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ....+++++++.++||++|++++
T Consensus        72 ~~~~l~~~~~v~~~Pt~~~~~~~   94 (125)
T cd02951          72 SEKELARKYRVRFTPTVIFLDPE   94 (125)
T ss_pred             cHHHHHHHcCCccccEEEEEcCC
Confidence            45678899999999999999973

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=87.26  E-value=0.86  Score=24.25  Aligned_cols=21  Identities=14%  Similarity=0.297  Sum_probs=16.6

Q ss_pred             EEEEcCCCHHHHhhhHHHHHH
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      ..|+.++|+.|++..-.+++.
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~   22 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEK   22 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHc
Confidence            457889999999988776653

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=87.01  E-value=0.27  Score=27.77  Aligned_cols=45  Identities=24%  Similarity=0.230  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452          19 KPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ...+++..+..+.  ....+..+.+....+.+.+++.++|++++++.
T Consensus        47 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~   91 (95)
T PF13905_consen   47 EEEWKKFLKKNNF--PWYNVPFDDDNNSELLKKYGINGIPTLVLLDP   91 (95)
T ss_dssp             HHHHHHHHHTCTT--SSEEEETTTHHHHHHHHHTT-TSSSEEEEEET
T ss_pred             HHHHHHHHHhcCC--CceEEeeCcchHHHHHHHCCCCcCCEEEEECC
Confidence            4556665555532  34444455555678899999999999998875

...

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=86.93  E-value=0.51  Score=29.07  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.1

Q ss_pred             CccchhhhcCCCCCCEEEEecCCc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      -++.+.++|+|+.+|++++.+++.
T Consensus        59 IdP~lF~~f~I~~VPa~V~~~~~~   82 (130)
T TIGR02742        59 IDPQWFKQFDITAVPAFVVVKDGL   82 (130)
T ss_pred             EChHHHhhcCceEcCEEEEECCCC
Confidence            478899999999999999997763

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=86.64  E-value=1.7  Score=29.44  Aligned_cols=44  Identities=9%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc--ceEEEEEeCCCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEH   45 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~   45 (116)
                      +++|-+-..+|..|..-+..|+.+..++...+  +|.|+.|+-...
T Consensus        28 VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~   73 (238)
T PF04592_consen   28 VTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE   73 (238)
T ss_pred             EEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence            56777888899999999999999998887666  899999985543

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>KOG3171|consensus

Probab=86.41  E-value=4.9  Score=27.15  Aligned_cols=38  Identities=8%  Similarity=0.085  Sum_probs=29.4

Q ss_pred             eeceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          68 MIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        68 ~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.+.|.++. ..+....++|.....||+++|++|+.|
T Consensus       187 eyP~vKFckik-ss~~gas~~F~~n~lP~LliYkgGeLI  224 (273)
T KOG3171|consen  187 EYPIVKFCKIK-SSNTGASDRFSLNVLPTLLIYKGGELI  224 (273)
T ss_pred             cCCceeEEEee-eccccchhhhcccCCceEEEeeCCchh
Confidence            34677777766 345566789999999999999999765

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=85.99  E-value=1.1  Score=26.74  Aligned_cols=41  Identities=12%  Similarity=0.080  Sum_probs=26.7

Q ss_pred             HHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452          21 EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++..++++    +.+..+..+....+++.|++..+|+.++++.
T Consensus        69 ~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~  109 (127)
T cd03010          69 NALAWLARHG----NPYAAVGFDPDGRVGIDLGVYGVPETFLIDG  109 (127)
T ss_pred             HHHHHHHhcC----CCCceEEECCcchHHHhcCCCCCCeEEEECC
Confidence            3444444442    3343445567778999999999997777653

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=85.95  E-value=1.8  Score=25.45  Aligned_cols=42  Identities=5%  Similarity=-0.001  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452          20 PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ..+.+..++++-  .+.+   -.+.+..++++|++.++|++++++++
T Consensus        62 ~~~~~~~~~~~~--~~~~---~~d~~~~~~~~~~i~~~P~~~vid~~  103 (123)
T cd03011          62 GAVARFMQKKGY--GFPV---INDPDGVISARWGVSVTPAIVIVDPG  103 (123)
T ss_pred             HHHHHHHHHcCC--CccE---EECCCcHHHHhCCCCcccEEEEEcCC
Confidence            445555555532  2332   23566789999999999999999863

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>KOG1672|consensus

Probab=85.86  E-value=0.6  Score=30.77  Aligned_cols=36  Identities=17%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ....|.++++..-+=++.+++|.-.|++++|++|..
T Consensus       114 ~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~  149 (211)
T KOG1672|consen  114 VETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKT  149 (211)
T ss_pred             ccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEE
Confidence            467888999998999999999999999999999853

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=85.58  E-value=1.1  Score=26.84  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=16.9

Q ss_pred             ccchhhhcCCCCCCEEEEecC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHY  102 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~  102 (116)
                      ++.+.++|+|+.+||+++.++
T Consensus        60 dP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   60 DPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             ChhHHhhCCceEcCEEEEEcC
Confidence            677888888888888888866

The N-terminal portion of these proteins is heterogeneous.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=85.22  E-value=1.7  Score=27.19  Aligned_cols=44  Identities=16%  Similarity=0.412  Sum_probs=32.6

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK   55 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~   55 (116)
                      ++.+++|.|+=|......++.     +   .+.+-.+..++-..+-++++|.
T Consensus        28 ~~vyksPnCGCC~~w~~~mk~-----~---Gf~Vk~~~~~d~~alK~~~gIp   71 (149)
T COG3019          28 MVVYKSPNCGCCDEWAQHMKA-----N---GFEVKVVETDDFLALKRRLGIP   71 (149)
T ss_pred             EEEEeCCCCccHHHHHHHHHh-----C---CcEEEEeecCcHHHHHHhcCCC
Confidence            677899999999998776662     2   3666667677777777777774

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=84.11  E-value=6.1  Score=22.80  Aligned_cols=49  Identities=12%  Similarity=0.006  Sum_probs=30.0

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++.|..+. ..|.++...++++++.-+   ++.+...+...           ..|++.+++++
T Consensus        22 ~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~-----------~~P~~~i~~~~   70 (94)
T cd02974          22 ELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE-----------RKPSFSINRPG   70 (94)
T ss_pred             EEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC-----------CCCEEEEecCC
Confidence            344555544 889998888888877654   45553322211           35777776554

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=83.98  E-value=0.8  Score=27.40  Aligned_cols=42  Identities=21%  Similarity=0.341  Sum_probs=26.2

Q ss_pred             hhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452          17 KAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      .+.+.+..+.+........    ....-++.+-++|+|+.+||+++
T Consensus        36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~   77 (113)
T PF09673_consen   36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVV   77 (113)
T ss_pred             CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEE
Confidence            3444555554444432211    33455788899999999999874

The N-terminal portion of these proteins is heterogeneous.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=83.32  E-value=1.1  Score=23.99  Aligned_cols=51  Identities=18%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc----ccccccCCccccceEE
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH----GPLCKEYDIKGYPTFH   61 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~   61 (116)
                      ..|+.++|+.|++.+-.+++..-      .+....+|..+.    +++.+......+|++.
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~   56 (74)
T cd03045           2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV   56 (74)
T ss_pred             EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence            46789999999987766665322      244444544322    2333333334566664

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>KOG2603|consensus

Probab=83.28  E-value=2.4  Score=30.00  Aligned_cols=32  Identities=16%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHY  102 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~  102 (116)
                      ++-+..+|.++.++..+++++...|++++|++
T Consensus       104 klFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P  135 (331)
T KOG2603|consen  104 KLFFCMVDYDESPQVFQQLNLNNVPHLVLFSP  135 (331)
T ss_pred             eEEEEEEeccccHHHHHHhcccCCCeEEEeCC
Confidence            67889999999999999999999999999944

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=82.70  E-value=1.5  Score=29.73  Aligned_cols=38  Identities=13%  Similarity=0.081  Sum_probs=31.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAI   40 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~v   40 (116)
                      +|.+++|.+-.||+=..-.+.++++++++.+  ...|+.|
T Consensus       103 RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d--~adFl~V  140 (237)
T PF00837_consen  103 RPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD--VADFLIV  140 (237)
T ss_pred             CCeEEEcccccchHHHHHHHHHHHHHHHhhh--hhheehh
Confidence            4789999999999999999999999999987  3344433

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=82.52  E-value=1.2  Score=29.52  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHh
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVL   29 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~   29 (116)
                      |..+.+.+-|-|+.|--..|.++++....
T Consensus         1 ~~~lhYifDPmCgWCyGa~Pll~~l~~~~   29 (212)
T COG3531           1 GVTLHYIFDPMCGWCYGAAPLLEALSAQP   29 (212)
T ss_pred             CceeEEecCcchhhhhCccHHHHHHHhcC
Confidence            45678889999999999999999988764

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=81.23  E-value=2.8  Score=22.55  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=16.7

Q ss_pred             EEEEEcCCCHHHHhhhHHHHH
Q psy3452           4 SILFYSPGCGYCKKAKPEYVK   24 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~   24 (116)
                      +..|+.+.|+.|++.+-.+.+
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~   22 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDY   22 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHH
Confidence            346788999999998876665

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=81.04  E-value=1.1  Score=28.63  Aligned_cols=27  Identities=30%  Similarity=0.515  Sum_probs=24.4

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLK   30 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~   30 (116)
                      +..|+-+.||.|-...+.++++.+.++
T Consensus         3 i~~~~D~~cp~c~~~~~~l~~l~~~~~   29 (193)
T cd03025           3 LYYFIDPLCGWCYGFEPLLEKLKEEYG   29 (193)
T ss_pred             EEEEECCCCchhhCchHHHHHHHHHhC
Confidence            567889999999999999999999984

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=80.37  E-value=9.7  Score=24.17  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      .+..|+..-||.|-...+.++++.+.+++- .+....+.....
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~l~~~   42 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFPLRPD   42 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEESSSTH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccccccc
Confidence            367899999999999999999999999442 566666665443

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>KOG0913|consensus

Probab=80.16  E-value=1.8  Score=29.39  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=37.7

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      .+..+.+|...+..+--+|-|...|||+-.++|..   -.|.|+.+
T Consensus        72 ~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGeF---rrysgaRd  114 (248)
T KOG0913|consen   72 GVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGEF---RRYSGARD  114 (248)
T ss_pred             ceeEEEEEEEeccccceeeEEEecceEEEeecccc---ccccCccc
Confidence            57889999999999999999999999999999976   67887653

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=80.05  E-value=4.9  Score=23.79  Aligned_cols=34  Identities=6%  Similarity=-0.041  Sum_probs=28.7

Q ss_pred             ceeeEEEEeccCccchhhhcCCCC--CCEEEEecCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKG--YPTFQYFHYF  103 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~--~Pt~~~~~~g  103 (116)
                      +++.+..+|.+......+.||++.  +|++.+....
T Consensus        48 gki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~   83 (111)
T cd03072          48 GAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFR   83 (111)
T ss_pred             ceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcch
Confidence            568888899887777999999997  8999999654

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		3e-11
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		7e-10
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		1e-09
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		1e-09
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		4e-09
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		2e-08
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		4e-08
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		6e-08
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		4e-07
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		4e-07
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		1e-05
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		2e-05
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		2e-05
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-05
3qcp_A	470	Qsox From Trypanosoma Brucei Length = 470		4e-05
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		8e-05
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		1e-04
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		1e-04
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		3e-04
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		3e-04
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		4e-04
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		4e-04
3qd9_A	470	C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAIN		5e-04
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		6e-04

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          F++P CG+CK   PEYVKAAE L + + + LA IDCTE+  LC E++I G+P+ 
Sbjct: 38 FFAPWCGHCKNMAPEYVKAAETLVEKN-ITLAQIDCTENQDLCMEHNIPGFPSL 90

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 5  ILFYSPGCGYCKKAKPEYVKAA-EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          + FY+P CG+CKK  PEY KAA E+ K +  + LA +D TE   L K +D+ GYPT  
Sbjct: 29 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTLK 86

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
          FY+P CG+CK+  PEY K A  LKDN   +A+A ID T    L  ++D+ GYPT   L
Sbjct: 41 FYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKIL 98

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + FY+P CG+CK   PEY KAA  LK +  ++ LA +D TE   L ++Y ++GYPT 
Sbjct: 29 VEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI 85

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 5   ILFYSPGCGYCKKAKPEYVKAA-EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
           + FY+P CG+CKK  PEY KAA E+ K +  + LA +D T    L K +D+ GYPT  
Sbjct: 152 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLK 209

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 3  YSILFYSPGCGYCKKAKPEYVKAAEVLKDN--HKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + + FY+P CG+CK  +PE+  AA  +K+    KV LAA+D T +  L   Y I+G+PT 
Sbjct: 28 WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 2  FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           + + FY+P CG+C++  PE+ KAA  LKD  KV   A++  +H  L  +Y ++G+PT 
Sbjct: 37 LWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKV--GAVNADKHQSLGGQYGVQGFPTI 93

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + F++P CG+CK+  PEY  AA  LK    V LA +DCT +   C +Y + GYPT 
Sbjct: 26 VEFFAPWCGHCKRLAPEYEAAATRLK--GIVPLAKVDCTANTNTCNKYGVSGYPTL 79

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + F++P CG+ K+  PEY  AA  LK    V LA +DCT +   C +Y + GYPT 
Sbjct: 26 VEFFAPWCGHAKRLAPEYEAAATRLK--GIVPLAKVDCTANTNTCNKYGVSGYPTL 79

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + FY+P CG+CKK    + KAA+ L    +VA    D  ++  LC +YD+ G+PT 
Sbjct: 40 VEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTL 95

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 5  ILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          I FY+P CG+CK   P + + + +       V +A +DCT    +C +Y ++GYPT 
Sbjct: 26 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 82

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 5  ILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          I FY+P CG+CK   P + + + +       V +A +DCT    +C +Y ++GYPT 
Sbjct: 21 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 77

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 5  ILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          I FY+P CG+CK   P + + + +       V +A +DCT    +C +Y ++GYPT 
Sbjct: 28 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 84

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
           I FY+P CG+CK  +P+Y +  E L  +  + +A +D T +  +   Y+++G+PT +
Sbjct: 50  IEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPSPYEVRGFPTIY 105

>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei Length = 470

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVAL-----AAIDCTEHGPLCKEYDIKGYP 58
           +LFY+ GCG C++    + K A  LK  H K AL     AA++C     LC++YDI   P
Sbjct: 47  VLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVP 106

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          I FY+P CG+CK+ +P Y    +  K    + +A +D T +     +Y ++G+PT +
Sbjct: 30 IEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIY 86

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 3  YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
          + I FY+P C  C+  +PE+   AE  +D  +V +A +D TE   L   + I   PT +H
Sbjct: 25 WMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAKVDVTEQPGLSGRFIINALPTIYH 83

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 3  YSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE--HGPLCKEYDIKGYPT 59
          +++ F++  CG+C    P +   AE +K     + LAA+DC E  +  +C++++I G+PT
Sbjct: 33 WAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92
Query: 60 FH 61
Sbjct: 93 VR 94

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 58  PTFHHLALTIMIIR--LALAAIDCTE--HGPLCKEYDIKGYPTFQYFHYFNK 105
           PT+  LA  +   R  L LA +DC E  +  +C+E++I G+PT ++F  F K
Sbjct: 50  PTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTK 101

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           F++P CG C++  P++  AA  L    +V LA ID   H  +   + I+G P F
Sbjct: 71  FWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAF 122

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 3  YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          + + FY+P CG C+   PE+   A ++K   KV    +DC  +   C++  IK YP+  
Sbjct: 24 WVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK 80

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43
           FY+P CG+CK+  P + K  E  KD+  + +A +D T
Sbjct: 274 FYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310

>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN INTERDOMAIN Disulfide Length = 470

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVAL-----AAIDCTEHGPLCKEYDIKGYP 58
           +LFY+ GCG  ++    + K A  LK  H K AL     AA++C     LC++YDI   P
Sbjct: 47  VLFYNDGCGASRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVP 106

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDN----HKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          FY+  C + +   P + +A++V+K+     ++V  A +DC +H  + + Y I  YPT 
Sbjct: 29 FYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTL 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	9e-23
1mek_A	120	Protein disulfide isomerase; electron transport, r	1e-22
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	1e-22
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	7e-22
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-21
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	2e-21
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-21
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-20
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-20
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-15
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	2e-19
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	7e-05
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-19
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	5e-14
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	6e-19
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-18
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	6e-18
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	4e-16
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	1e-17
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	2e-17
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	1e-16
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	1e-08
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-16
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-16
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-06
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	6e-16
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-15
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	8e-15
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	2e-12
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	7e-11
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-10
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	1e-04
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	7e-08
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	7e-07
2l57_A	126	Uncharacterized protein; structural genomics, unkn	9e-07
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-06
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-06
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	1e-06
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	2e-06
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	6e-06
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	6e-06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	2e-05
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	3e-05
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	3e-05
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	3e-05
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	4e-05
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	5e-05
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-04
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-04
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	3e-04
2kuc_A	130	Putative disulphide-isomerase; structural genomics	6e-04
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	7e-04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	7e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	7e-04

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 85.1 bits (211), Expect = 9e-23
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPT 59
          + FY+P CG+CK+  PEY K A  LKDN   +A+A ID T    L  ++D+ GYPT
Sbjct: 39 LEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT 94

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 84.3 bits (209), Expect = 1e-22
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPT 59
          + FY+P CG+CK   PEY KAA  LK    ++ LA +D TE   L ++Y ++GYPT
Sbjct: 29 VEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT 84

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 84.8 bits (210), Expect = 1e-22
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FY+P CG+C++  PE+ KAA  LKD   V + A++  +H  L  +Y ++G+PT
Sbjct: 42 FYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQSLGGQYGVQGFPT 92

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 82.8 bits (205), Expect = 7e-22
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEHGPLCKEYDIKGYPTF 60
          FY+P CG+CK  +PE+  AA  +K+    KV LAA+D T +  L   Y I+G+PT 
Sbjct: 32 FYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 81.2 bits (201), Expect = 2e-21
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTF 60
          FY+P CG+CK   P + + ++        V +A +DCT    +C +Y ++GYPT 
Sbjct: 28 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 82

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 81.2 bits (201), Expect = 2e-21
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
          I FY+P C  C+  +PE+   AE  +D  +V +A +D TE   L   + I   PT +H
Sbjct: 27 IEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTEQPGLSGRFIINALPTIYH 83

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 81.3 bits (201), Expect = 2e-21
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          I FY+P CG+CK+ +P Y    +  K    + +A +D T +     +Y ++G+PT 
Sbjct: 30 IEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 83.3 bits (205), Expect = 1e-20
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FY+P CG+CKK    + KAA+ L    +VA    D  ++  LC +YD+ G+PT
Sbjct: 42 FYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPT 94

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 82.2 bits (203), Expect = 1e-20
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          FY+P CG+CK+  PEY K A +LKD +  + +A ID T    L   +D+ GYPT 
Sbjct: 39 FYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI 93

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 69.1 bits (169), Expect = 1e-15
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTF 60
           + FY+P CG+CKK  PEY KAA+ L      + LA +D T    L K +D+ GYPT 
Sbjct: 152 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL 208

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 79.3 bits (195), Expect = 2e-19
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE--HGPLCKEYDIKGYPT 59
          F++  CG+C    P +   AE +K     + LAA+DC E  +  +C++++I G+PT
Sbjct: 37 FFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 4/56 (7%), Positives = 17/56 (30%), Gaps = 8/56 (14%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           ++F   G    ++   +  +   V                   + +++ +  +P+ 
Sbjct: 162 LIFEXGGSYLAREVALDLSQHKGV--------AVRRVLNTEANVVRKFGVTDFPSC 209

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 80.7 bits (198), Expect = 3e-19
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
            F++P CG+CK   PEYVKAAE L +   + LA IDCTE+  LC E++I G+P+
Sbjct: 36 AEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPS 89

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 65.6 bits (159), Expect = 5e-14
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           +L+Y+P CG+CK+  P Y + A+   +    V +A +D TE+    +   I+GYPT 
Sbjct: 381 VLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN--DVRGVVIEGYPTI 435

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 75.1 bits (185), Expect = 6e-19
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLK---DNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          +L+Y P   +   A   +   +       ++     A ID  ++  + +   + G+PT 
Sbjct: 38 VLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTM 96

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 78.5 bits (193), Expect = 1e-18
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNH----KVALAAIDCTEHGPLCKEYDIKGYPT 59
          + FY+  C + +   P + +A++V+K+      +V  A +DC +H  + + Y I  YPT
Sbjct: 27 VNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPT 85

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 76.8 bits (188), Expect = 6e-18
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
          + F++P CG+ K+  PEY  AA  LK    V LA +DCT +   C +Y + GYPT   
Sbjct: 26 VEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVDCTANTNTCNKYGVSGYPTLKI 81

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 71.8 bits (175), Expect = 4e-16
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           I FY+P CG+CK  +P+Y +  E L  +  + +A +D T +  +   Y+++G+PT 
Sbjct: 375 IEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPSPYEVRGFPTI 429

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 76.5 bits (187), Expect = 1e-17
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE--HGPLCKEYDIKGYPT 59
          F++  CG+     P + + A  +KD    + LA +DC E  +  +C+E++I G+PT
Sbjct: 37 FFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT 92

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 75.8 bits (185), Expect = 2e-17
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 31/112 (27%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           +LFY+ GCG C++    + K A  LK  H      I                        
Sbjct: 47  VLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI------------------------ 82

Query: 65  LTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116
                     AA++C     LC++YDI   P   +F+  +    +      +
Sbjct: 83  -------ATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSS 127

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 72.8 bits (178), Expect = 1e-16
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           + FY+P CG+CK+  P + K  E  KD+  + +A +D T +    +   +  +PT 
Sbjct: 272 VEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN--EVEAVKVHSFPTL 325

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           +LF              +  AAE  K          D T++  + + + +K    
Sbjct: 140 LLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC 194

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 68.5 bits (168), Expect = 2e-16
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          FY+P CG C+   PE+   A ++K   KV    +DC  +   C++  IK YP+
Sbjct: 28 FYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPS 78

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 72.5 bits (177), Expect = 2e-16
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
           + FYSPG  +     P + + A+ +     + + A++C +   LC+   +  YP+   
Sbjct: 138 VNFYSPGSSHSHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPSLFI 193

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 70.6 bits (172), Expect = 1e-15
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
           + FY+P  G  +   PE+   A ++K   KV    +DC  +   C++  IK YP+  
Sbjct: 680 VDFYAPWSGPSQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK 734

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 69.8 bits (170), Expect = 2e-15
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           + F++P     +   PE  KA+ +L    ++ +  +DCT H  LC  Y+I+ YPT
Sbjct: 460 VDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCTIHEGLCNMYNIQAYPT 512

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 65.2 bits (158), Expect = 9e-14
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           + FYSP     +   PE+ + A  L     + + ++DC ++   C + +++ YP  
Sbjct: 568 VDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYPEI 621

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 52.4 bits (125), Expect = 3e-09
 Identities = 9/57 (15%), Positives = 16/57 (28%)

Query: 4   SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
            + +    C   +       +       +  V +  +DC     LCK  D     T 
Sbjct: 243 GVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTA 299

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
            L +           PE  K   +LK+   + +   DC+    +C +  +   P+ 
Sbjct: 354 WLVFFHFGKNENANDPELKKLKTLLKNE-HIQVVRFDCSSAPGICSDLYVF-QPSL 407

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 70.9 bits (173), Expect = 6e-16
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLK------DNHKVALAAIDCTEHGPLCKEYDIKGYP 58
           L+Y       K A+ ++     VL+      ++  +    +D  +   L K+       
Sbjct: 32 CLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEG 91

Query: 59 T 59
          +
Sbjct: 92 S 92

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 5  ILFYSPGCGYCKKAK------PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
          +L++ P        +           AA+VL+D   V    +D  +   + K+  +    
Sbjct: 35 LLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDAAVAKKLGLTEED 93

Query: 59 T 59
          +
Sbjct: 94 S 94

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 64.3 bits (157), Expect = 8e-15
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNH---KVALAAIDCTEHGPLCKEYDIKGYPTF 60
          I FY+P CG+CK   P+Y +   +   +    +V +A +D T +       +I+G+PT 
Sbjct: 30 IEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---VPDEIQGFPTI 85

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score = 60.4 bits (146), Expect = 2e-12
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 36/114 (31%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
           + F +      K+   E+ + AE    +  + +A +  +++                   
Sbjct: 27  VKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY------------------- 65

Query: 65  LTIMIIRLALAAIDCTEHGPLCKEY--DIKGYPTFQYFHYFNKQSPSPYHNDYT 116
                            +  L ++Y  D + YP F  F   + ++P PY     
Sbjct: 66  -------------GDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVK 106

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 56.2 bits (135), Expect = 7e-11
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 2   FYSILFYSPGCGYCKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
               +F +  CGYC    P     A      N  +    ID +E+  L +++ + G P  
Sbjct: 138 IEIWVFVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKI 193

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNH---KVALAAIDCTEHGPLCKEYDIKGYPTF 60
            + GC  C+ A+    +  EV+ +     K+ L       H    ++Y +   PT 
Sbjct: 29 SQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTI 85

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 15/93 (16%)

Query: 15  CKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLA 73
             +   + ++  +V+             C      C              AL    I   
Sbjct: 120 KPQLSEKTLELLQVVDIPIEIWVFVTTSC----GYCPSA----AVMAWDFALANDYITSK 171

Query: 74  LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106
              ID +E+  L +++ + G P        NK 
Sbjct: 172 --VIDASENQDLAEQFQVVGVPKI----VINKG 198

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 45.4 bits (108), Expect = 7e-08
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           +F SP C YC  A     +A +   D  K+ +  ID         EY +   P 
Sbjct: 6  EVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPA 58

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT----EHGPLCKEYDIKGYPTF 60
           Y+  C  CK+ +       +V K      L   + T    +   L K  ++ G PT 
Sbjct: 38 LYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI 95

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 43.6 bits (103), Expect = 9e-07
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          F +  C YC + + E    ++  +    +  A ++  ++  L  +YD    PT 
Sbjct: 33 FKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTT 86

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 3   YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
           + + FYSPGC +C    P + + A+ +     + + A++C +   LC+   +  YP+
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPS 171

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          +   +  CG C        K   VL++ + V    I   +   +   Y +   PT 
Sbjct: 23 LFIKTENCGVCDVMLR---KVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTV 75

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEHGPLCKEYDIKGYPT 59
           F +P C YC  A     K A         K+    ++  E+     +Y++   P 
Sbjct: 141 FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPK 195

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP------LCKEYDIKGYP 58
           ++ +  C +C+  K  +  A +         +  ++C+ +GP       C E  I  YP
Sbjct: 17 TMYGAYWCPHCQDQKELFGAAFDQ--------VPYVECSPNGPGTPQAQECTEAGITSYP 68

Query: 59 TF 60
          T+
Sbjct: 69 TW 70

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 42.5 bits (99), Expect = 6e-06
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKD--NHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
               +P C YC  A       A       N  +   A++  E+  +  +Y +   P+ 
Sbjct: 143 ETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSI 200

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + F       C +      K +  L      A+  +D  +     + +DI   P+ 
Sbjct: 28 LRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTAVYTQYFDISYIPST 81

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
            F+S    +C +  P     A   + N +  LA +DC     +  ++ ++  PT
Sbjct: 31 FYFWSERSQHCLQLTPILESLAA--QYNGQFILAKLDCDAEQMIAAQFGLRAIPT 83

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 5   ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG--YPTF 60
           ++ +   CG CK  KP++ ++ E+ + +H   +  ++  E  P  +++   G   P  
Sbjct: 51  VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE-PKDEDFSPDGGYIPRI 107

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          F +  CG  K  KP +   +E       V    +D  +   +  E ++K  PTF 
Sbjct: 38 FSATWCGPSKMIKPFFHSLSE---KYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 89

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 2   FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
               ++ +  C +C+  K  +  A + +   +         T     C E  I  YPT
Sbjct: 199 IGGTMYGAYWCPHCQDQKELFGAAFDQV--PYVECSPNGPGTPQAQECTEAGITSYPT 254

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          F   GCG C +  P +   +       +     +D  +        +I   PTF 
Sbjct: 28 FTMRGCGPCLRIAPAFSSMSN---KYPQAVFLEVDVHQCQGTAATNNISATPTFQ 79

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          F +  CG CK  KP +   +E       V    +D  +   +  E ++K  PTF 
Sbjct: 27 FSATWCGPCKMIKPFFHSLSE---KYSNVIFLEVDVDDCQDVASESEVKSMPTFQ 78

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          F++  CG CK   P + + +E     +      +D  +     ++Y+I   PTF 
Sbjct: 40 FFATWCGPCKTIAPLFKELSE----KYDAIFVKVDVDKLEETARKYNISAMPTFI 90

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          F +  C  C K K  +          + V L  ID   H  L  +++IK  PTF 
Sbjct: 47 FGAVWCKPCNKIKEYFKNQLN----YYYVTLVDIDVDIHPKLNDQHNIKALPTFE 97

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
          F++     CK  K  +   +    ++  V+  +ID  E+  + + ++I   P F 
Sbjct: 28 FHTSWAEPCKALKQVFEAISNEPSNS-NVSFLSIDADENSEISELFEISAVPYFI 81

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 7  FYSPGCGYCKKAKPEYVK---AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           ++  CG CK+      K    A+    +       ++  E   L K+Y +  YPT 
Sbjct: 34 CFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL 90

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 34.9 bits (81), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 7  FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
          F SP C +C  AK    + A  + D   V +  I+  E+     EY I   PT
Sbjct: 9  FTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPT 59

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP--LCKEYDIKGYPTF 60
          ++F  PGC YC +   E      +  +     +  +   +  P  L     +   PTF
Sbjct: 23 LMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTF 80

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 15/92 (16%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY-DIKGYPTFHHLAL 65
           F+   CG+C++  P+        +    + + A +         ++   K    + ++  
Sbjct: 38  FWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVR- 95

Query: 66  TIMIIRLALAAIDCTEHGPLCKEYDIKGYPTF 97
                       D   H      YDI   P  
Sbjct: 96  ------------DSKNHTDFKITYDIYATPVL 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.93
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.88
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.87
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.87
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.86
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.86
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.85
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.84
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.83
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.82
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.82
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.81
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.81
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.8
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.8
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.8
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.79
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.79
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.79
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.79
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.79
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.78
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.78
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.78
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.77
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.77
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.77
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.77
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.77
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.77
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.77
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.76
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.76
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.76
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.76
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.76
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.76
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.76
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.75
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.75
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.75
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.75
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.75
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.75
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.75
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.75
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.75
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.75
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.75
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.74
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.74
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.74
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.74
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.74
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.74
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.74
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.74
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.74
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.73
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.73
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.73
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.73
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.73
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.73
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.73
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.73
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.73
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.73
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.72
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.72
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.72
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.72
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.72
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.72
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.72
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.71
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.71
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.71
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.71
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.71
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.71
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.71
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.71
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.71
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.71
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.7
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.7
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.7
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.7
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.7
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.7
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.69
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.69
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.69
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.68
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.68
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.68
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.68
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.67
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.67
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.67
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.66
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.66
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.65
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.65
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.65
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.65
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.64
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.64
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.64
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.64
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.64
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.64
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.64
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.63
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.63
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.63
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.63
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.63
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.63
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.62
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.62
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.62
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.62
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.62
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.61
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.41
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.61
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.61
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.61
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.6
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.6
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.6
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.59
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.59
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.59
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.38
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.59
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.59
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.59
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.58
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.58
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.58
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.57
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.57
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.57
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.57
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.56
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.56
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.34
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.56
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.56
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.55
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.55
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.55
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.54
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.52
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.52
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.5
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.5
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.5
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.49
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.49
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.46
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.19
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.46
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.45
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.41
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.38
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.38
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.38
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.37
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.36
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.36
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.35
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.35
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.35
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.34
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.34
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.34
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.33
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.33
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.33
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.32
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.32
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.32
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.31
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.31
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.31
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.3
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.29
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.27
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.27
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.27
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.25
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.25
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.25
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.24
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.24
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.24
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.23
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.22
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.22
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.22
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.21
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.21
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.21
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.21
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.2
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.2
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.2
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.19
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.18
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.16
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.16
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.15
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.13
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.05
3me7_A	170	Putative uncharacterized protein; electron transfe	99.05
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.05
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.05
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.01
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.01
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.0
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.97
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.96
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.89
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.89
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.87
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.86
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.85
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.81
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.8
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.79
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.75
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.72
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.69
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.67
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.67
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.65
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.65
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.64
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.62
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.59
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.58
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.52
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.5
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.47
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.43
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.42
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.41
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.41
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.41
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	98.4
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.39
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.37
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.37
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.37
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.27
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.26
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.26
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.2
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.19
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.18
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.17
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.14
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.14
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.06
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.06
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.06
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.04
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.04
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.04
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.03
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.01
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.01
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.98
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	97.98
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	97.97
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.97
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.97
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.97
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.94
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.93
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	97.92
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.91
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.91
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	97.9
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.9
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.9
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.9
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.89
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.88
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.88
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	97.88
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	97.87
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.87
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.86
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.86
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.86
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	97.85
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.85
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.85
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.84
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.84
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.84
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.83
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.82
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.81
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	97.81
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.8
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.79
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.77
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.76
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	97.76
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.73
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.72
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.7
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	97.7
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.7
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.67
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	97.66
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	97.65
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	97.65
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.64
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.64
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	97.63
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	97.63
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	97.63
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	97.62
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.61
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.59
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	97.58
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	97.57
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.57
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	97.57
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.57
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	97.56
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.55
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	96.68
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.53
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.52
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	97.51
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.49
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.46
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.45
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.45
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.45
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.43
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.41
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.4
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.39
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.39
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.33
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.32
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	97.31
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.3
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.3
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.28
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	97.28
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	97.24
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.22
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.21
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.15
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	97.12
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.12
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.08
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.05
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.03
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	96.99
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	96.98
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.97
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	96.96
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.95
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	96.9
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.87
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	96.87
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	96.87
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	96.83
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	96.74
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	96.74
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	96.73
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	96.67
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.6
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.59
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	96.57
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	96.4
3ira_A	173	Conserved protein; methanosarcina mazei,structural	96.31
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	96.23
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	96.22
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.17
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	96.09
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	96.08
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	96.07
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	96.06
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	95.96
1ttz_A	87	Conserved hypothetical protein; structural genomic	95.91
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	95.63
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	95.63
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	95.43
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	95.43
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	95.26
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	95.26
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.09
1wwj_A	105	Circadian clock protein KAIB; 1.90A {Synechocystis	94.98
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	94.96
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	94.74
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	94.71
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	93.94
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	93.93
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	93.56
3l78_A	120	Regulatory protein SPX; transcription, transcripti	93.54
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	93.2
3fz4_A	120	Putative arsenate reductase; APC61768, structural	92.85
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	92.49
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	91.98
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	91.21
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	90.95
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	90.69
3gkx_A	120	Putative ARSC family related protein; ARSC family	90.61
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	90.5
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	90.37
3rdw_A	121	Putative arsenate reductase; structural genomics,	89.88
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	88.96
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	87.86
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	87.84
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	87.67
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	86.83
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	86.45
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	85.89
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	85.68
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	85.65
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	85.14
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	85.04
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	84.61
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	83.93
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	83.8
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	83.77
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	83.23
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	82.94
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	82.45
4evm_A	138	Thioredoxin family protein; structural genomics, n	80.82
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	81.58
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	80.3

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.93  E-value=7.2e-26  Score=149.67  Aligned_cols=113  Identities=35%  Similarity=0.613  Sum_probs=99.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCce-------------
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT-------------   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~-------------   66 (116)
                      .+++|+|||+||++|+++.|.++++++.+++.+ .+.++.+|++++.+++++|+++++||++++++|             
T Consensus        33 ~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~  112 (241)
T 3idv_A           33 DTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEE  112 (241)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEECCSCSCHHH
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCCCcccccCcccHHH
Confidence            368999999999999999999999999998743 499999999999999999999999999999876             


Q ss_pred             ---------------------------------------eee--------------------------ceeeEEEEeccC
Q psy3452          67 ---------------------------------------IMI--------------------------IRLALAAIDCTE   81 (116)
Q Consensus        67 ---------------------------------------v~f--------------------------~~~~~~~v~~~~   81 (116)
                                                             +.|                          ..+.++.+|++.
T Consensus       113 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~  192 (241)
T 3idv_A          113 IVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA  192 (241)
T ss_dssp             HHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT
T ss_pred             HHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC
Confidence                                                   222                          228999999999


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.+++++|+|+++||+++|++|+.   +.|.|..+
T Consensus       193 ~~~l~~~~~v~~~Pt~~~~~~g~~---~~~~g~~~  224 (241)
T 3idv_A          193 ETDLAKRFDVSGYPTLKIFRKGRP---YDYNGPRE  224 (241)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETTEE---EECCSCCS
T ss_pred             CHHHHHHcCCcccCEEEEEECCeE---EEecCCCC
Confidence            999999999999999999998865   44888753

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.88  E-value=1.7e-22  Score=125.98  Aligned_cols=64  Identities=17%  Similarity=0.115  Sum_probs=60.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+|+|+|||+||++|+.+.|.++++++++++  .+.++++|++++++++++|+|+++||++||+++
T Consensus        42 k~VVVdF~A~WCgPCk~m~PvleelA~e~~~--~v~f~kVDVDe~~e~a~~y~V~siPT~~fFk~G  105 (160)
T 2av4_A           42 RLVCIRFGHDYDPDCMKMDELLYKVADDIKN--FCVIYLVDITEVPDFNTMYELYDPVSVMFFYRN  105 (160)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTTTTCCSSEEEEEEETT
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence            3799999999999999999999999999987  689999999999999999999999999888775

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.87  E-value=4.8e-22  Score=130.46  Aligned_cols=109  Identities=17%  Similarity=0.307  Sum_probs=93.2

Q ss_pred             eEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC--cccccccCCccccceEEEcCce------------
Q psy3452           2 FYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIKGYPTFHHLALT------------   66 (116)
Q Consensus         2 ~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~~------------   66 (116)
                      +++++||++ ||++|+++.|.++++++. .+  ++.++.+|+++  +++++++|+++++||+++++++            
T Consensus        24 v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~--~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~~  100 (226)
T 1a8l_A           24 VKLIVFVRKDHCQYCDQLKQLVQELSEL-TD--KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPA  100 (226)
T ss_dssp             EEEEEEECSSSCTTHHHHHHHHHHHHTT-CT--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCC
T ss_pred             eEEEEEecCCCCchhHHHHHHHHHHHhh-CC--ceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCceeeEEEeccCc
Confidence            467999999 999999999999999865 33  79999999999  9999999999999999999654            


Q ss_pred             --------------------------------------eee----------------------c-----eeeEEEEeccC
Q psy3452          67 --------------------------------------IMI----------------------I-----RLALAAIDCTE   81 (116)
Q Consensus        67 --------------------------------------v~f----------------------~-----~~~~~~v~~~~   81 (116)
                                                            +.|                      .     ++.++.+|++.
T Consensus       101 ~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~  180 (226)
T 1a8l_A          101 GHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE  180 (226)
T ss_dssp             TTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc
Confidence                                                  112                      3     68899999999


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+++++|+|+++||++++++|+.+  ..|.|..
T Consensus       181 ~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~~  212 (226)
T 1a8l_A          181 YPEWADQYNVMAVPKIVIQVNGEDR--VEFEGAY  212 (226)
T ss_dssp             CHHHHHHTTCCSSCEEEEEETTEEE--EEEESCC
T ss_pred             CHHHHHhCCCcccCeEEEEeCCcee--EEEcCCC
Confidence            9999999999999999999888653  4565643

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=128.78  Aligned_cols=65  Identities=28%  Similarity=0.663  Sum_probs=59.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeC--CCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDC--TEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~--~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+|||+||++|+++.|.++++++.+++.. .+.++.+|+  +++.+++++|+|+++||++++++
T Consensus        31 ~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~   98 (244)
T 3q6o_A           31 SAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXA   98 (244)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECT
T ss_pred             CeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeC
Confidence            478999999999999999999999999998622 699999999  67889999999999999999997

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.86  E-value=7.3e-22  Score=116.49  Aligned_cols=63  Identities=24%  Similarity=0.445  Sum_probs=54.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+.+.|.++++++.++   .+.++++|++++++++++|+|+++||++++++|
T Consensus        21 k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G   83 (105)
T 3zzx_A           21 KLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECEDIAQDNQIACMPTFLFMKNG   83 (105)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CEEEEEEECCCCCCccCCCcchhhhhhccC---CeEEEEEecccCHHHHHHcCCCeecEEEEEECC
Confidence            378999999999999999999999999886   478888888888888888888888888887764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.86  E-value=2.4e-21  Score=117.14  Aligned_cols=82  Identities=18%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|+|||+||++|+++.|.++++++.+....           ..                       ..+.++.+|++
T Consensus        34 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~-----------~~-----------------------~~v~~~~vd~~   79 (127)
T 3h79_A           34 KDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKR-----------NH-----------------------LTFVAARIDGE   79 (127)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHHHTST-----------TT-----------------------TTEEEEEEETT
T ss_pred             CCEEEEEECCccHHHHHHhHHHHHHHHHHHhcc-----------cC-----------------------CCeEEEEEEcc
Confidence            378999999999999999999999998875311           00                       24566777888


Q ss_pred             CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      .+.+++++|+|+++||+++|++|+++.+..|.|..+
T Consensus        80 ~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~  115 (127)
T 3h79_A           80 KYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRY  115 (127)
T ss_dssp             TCHHHHHHTTCCSSSEEEEECSSCSSSCEECCSCCC
T ss_pred             ccHhHHHhcCCccCCEEEEEeCCCCCCceEecCCcc
Confidence            888899999999999999999888766678988754

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.85  E-value=8.9e-21  Score=143.10  Aligned_cols=110  Identities=22%  Similarity=0.496  Sum_probs=98.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce---------------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT---------------   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~---------------   66 (116)
                      +++|+|||+||++|+++.|.++++++.+++  ++.++.+|+++++.++++|+++++||+++++++               
T Consensus       457 ~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~  534 (780)
T 3apo_A          457 PWLVDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQIL  534 (780)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEECSCSCHHHHH
T ss_pred             eEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEeCCCCHHHHHHcCCCcCCeEEEEcCCceeeecCcccHHHHH
Confidence            689999999999999999999999999986  799999999999999999999999999999765               


Q ss_pred             ---------------------------------eee-----------------------ceeeEEEEeccCccchhhhcC
Q psy3452          67 ---------------------------------IMI-----------------------IRLALAAIDCTEHGPLCKEYD   90 (116)
Q Consensus        67 ---------------------------------v~f-----------------------~~~~~~~v~~~~~~~~~~~~~   90 (116)
                                                       +.|                       +.+.++.+||..+..++++++
T Consensus       535 ~fi~~~~~~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~~~~l~~~~~  614 (780)
T 3apo_A          535 EFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQEN  614 (780)
T ss_dssp             HHHHHHHSCSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTTHHHHHHTT
T ss_pred             HHHHhhcccceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCeEEEEEECcchHHHHHHcC
Confidence                                             111                       569999999999999999999


Q ss_pred             CCCCCEEEEecCCcc--cCCcCCCC
Q psy3452          91 IKGYPTFQYFHYFNK--QSPSPYHN  113 (116)
Q Consensus        91 v~~~Pt~~~~~~g~~--~~~~~y~g  113 (116)
                      |+++||+.+|+.|++  .....|+|
T Consensus       615 v~~~Pti~~~~~~~~~~~~~~~y~g  639 (780)
T 3apo_A          615 VQRYPEIRFYPQKSSKAYQYHSYNG  639 (780)
T ss_dssp             CCSSSEEEEECCCSSSCCSCEECCC
T ss_pred             CCCCCeEEEEcCCCcCccchhhcCC
Confidence            999999999988754  24577888

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.84  E-value=1.7e-20  Score=123.40  Aligned_cols=103  Identities=15%  Similarity=0.179  Sum_probs=87.1

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce---------------------
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT---------------------   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~---------------------   66 (116)
                      |++||++|+++.|.++++++.+.+.+.+.++++|++++++++++|+|+++||+++|+++                     
T Consensus        33 ~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~  112 (229)
T 2ywm_A           33 GCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLING  112 (229)
T ss_dssp             TCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEESCCCTTHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccceecCCccHHHHHHHHHH
Confidence            38999999999999999988884323799999999999999999999999999999764                     


Q ss_pred             ----------------------------eee----------------------ceeeEEEEeccCccchhhhcCCCCCCE
Q psy3452          67 ----------------------------IMI----------------------IRLALAAIDCTEHGPLCKEYDIKGYPT   96 (116)
Q Consensus        67 ----------------------------v~f----------------------~~~~~~~v~~~~~~~~~~~~~v~~~Pt   96 (116)
                                                  +.|                      +++.+..+|++.+.+++++|+|+++||
T Consensus       113 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  192 (229)
T 2ywm_A          113 IFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPK  192 (229)
T ss_dssp             HHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSE
T ss_pred             HHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCE
Confidence                                        122                      468899999999999999999999999


Q ss_pred             EEEecCCcccCCcCCCCCC
Q psy3452          97 FQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        97 ~~~~~~g~~~~~~~y~g~~  115 (116)
                      +++  +|+ +  ..|.|..
T Consensus       193 ~~~--~G~-~--~~~~G~~  206 (229)
T 2ywm_A          193 IVI--NKG-V--AEFVGAQ  206 (229)
T ss_dssp             EEE--GGG-T--EEEESCC
T ss_pred             EEE--CCE-E--EEeeCCC
Confidence            999  554 3  3466643

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.83  E-value=3.7e-20  Score=134.78  Aligned_cols=65  Identities=26%  Similarity=0.618  Sum_probs=59.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccC-cceEEEEEeCC--CcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDN-HKVALAAIDCT--EHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+|||+||++|+++.|.++++++.+++. ..+.++++|++  ++.+++++|+|+++||+++|++
T Consensus        31 k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~   98 (519)
T 3t58_A           31 SAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQA   98 (519)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECT
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcC
Confidence            37899999999999999999999999999862 26999999995  4889999999999999999995

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.82  E-value=5.5e-21  Score=117.12  Aligned_cols=63  Identities=6%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             eEEEEEEcCCC--HHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGC--GYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC--~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||  ++|+.+.|.++++++++++  ++.++++|.+++++++++|+|+++||+++|++|
T Consensus        35 ~vlVdF~A~wCr~gpCk~iaPvleela~e~~~--~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG   99 (137)
T 2qsi_A           35 IVVLFFRGDAVRFPEAADLAVVLPELINAFPG--RLVAAEVAAEAERGLMARFGVAVCPSLAVVQPE   99 (137)
T ss_dssp             EEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT--TEEEEEECGGGHHHHHHHHTCCSSSEEEEEECC
T ss_pred             cEEEEEeCCccCCCchhhHHhHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence            79999999999  9999999999999999987  799999999999999999999999999999986

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.82  E-value=1.6e-19  Score=127.07  Aligned_cols=65  Identities=26%  Similarity=0.611  Sum_probs=59.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhcc----CcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKD----NHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~----~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+++.|.++++++.+++    .+.+.++++|++++.+++++++|+++||+++|++|
T Consensus        24 ~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G   92 (382)
T 2r2j_A           24 VALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG   92 (382)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEETT
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeCC
Confidence            789999999999999999999999999853    22699999999999999999999999999999876

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.81  E-value=1e-19  Score=126.56  Aligned_cols=106  Identities=13%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHH-------HHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCcee--ee---
Q psy3452           2 FYSILFYSPGCGYCKKAKPE-------YVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTI--MI---   69 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~-------~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v--~f---   69 (116)
                      +++|+||||||+ |++++|.       ++++++.+++. .+.+++|||+++++++++++|+++||+++|++|.  .|   
T Consensus        30 ~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~-~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~G~  107 (350)
T 1sji_A           30 VLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK-DIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGE  107 (350)
T ss_dssp             EEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS-SEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEEEEECSC
T ss_pred             eEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc-CcEEEEEeCCCCHHHHHhcCCCccceEEEEECCcEEEecCC
Confidence            789999999999 9999998       89999999764 5999999999999999999999999999998771  11   


Q ss_pred             --------------------------------------------------------------ceeeEEEEeccCccchhh
Q psy3452          70 --------------------------------------------------------------IRLALAAIDCTEHGPLCK   87 (116)
Q Consensus        70 --------------------------------------------------------------~~~~~~~v~~~~~~~~~~   87 (116)
                                                                                    ..+.++.+   .+.++++
T Consensus       108 ~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f~~~---~~~~~~~  184 (350)
T 1sji_A          108 FAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFAT---FDKGVAK  184 (350)
T ss_dssp             CCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHHHHHTTTTSEEEEE---CCHHHHH
T ss_pred             CCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHHHHhhccCcEEEEE---CCHHHHH
Confidence                                                                          23334432   3456888


Q ss_pred             hcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          88 EYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        88 ~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      +++++ +|++++|++++. ....|+|+
T Consensus       185 ~~~v~-~p~i~~~~~~~~-~~~~y~g~  209 (350)
T 1sji_A          185 KLSLK-MNEVDFYEPFMD-EPIAIPDK  209 (350)
T ss_dssp             HHTCC-TTCEEEECTTCS-SCEECSSS
T ss_pred             HcCCC-CCcEEEEeCCCC-CceecCCC
Confidence            99999 999999987533 35789886

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.81  E-value=1.8e-19  Score=126.31  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=85.9

Q ss_pred             eEEEEEEcCCCHHHHhhh------HHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce---------
Q psy3452           2 FYSILFYSPGCGYCKKAK------PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT---------   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~------~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~---------   66 (116)
                      +++|+||||||++|+...      |.++++++.+++. .+.+++|||++++++|++|+|+++||+++|++|         
T Consensus        32 ~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~-~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f~~G~~~~y~G~~  110 (367)
T 3us3_A           32 VLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEF  110 (367)
T ss_dssp             EEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEEEECCSCC
T ss_pred             eEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC-CceEEEEeCcccHHHHHHcCCCcCceEEEEECCcEEEeCCCC
Confidence            689999999999974433      6899999999764 599999999999999999999999999999987         


Q ss_pred             --------------------------------------eee--------------------ceeeEEEEeccCccchhhh
Q psy3452          67 --------------------------------------IMI--------------------IRLALAAIDCTEHGPLCKE   88 (116)
Q Consensus        67 --------------------------------------v~f--------------------~~~~~~~v~~~~~~~~~~~   88 (116)
                                                            +.|                    +.+.++.+   .+.+++++
T Consensus       111 ~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A~~~~~~~~F~~~---~~~~~~~~  187 (367)
T 3us3_A          111 SADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFAT---FDSKVAKK  187 (367)
T ss_dssp             SHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTSCEEEE---CCHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEE---CCHHHHHH
Confidence                                                  111                    34555553   24578889


Q ss_pred             cCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          89 YDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        89 ~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      |+++. |++++|+++.. .+..|.|+
T Consensus       188 ~~v~~-p~i~lf~~~~~-~~~~y~g~  211 (367)
T 3us3_A          188 LTLKL-NEIDFYEAFME-EPVTIPDK  211 (367)
T ss_dssp             HTCCT-TCEEEECTTCS-SCEECSSS
T ss_pred             cCCCC-CeEEEEcCCCC-CCeecCCC
Confidence            99985 99999988533 36888885

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.80  E-value=1.7e-19  Score=111.39  Aligned_cols=64  Identities=20%  Similarity=0.108  Sum_probs=59.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+.+.|.++++++.+++  .+.++.+|++++++++++|+++++||+++|++|
T Consensus        24 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           24 RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            3789999999999999999999999999976  699999999999999999999999999999876

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=3.4e-19  Score=108.12  Aligned_cols=65  Identities=28%  Similarity=0.540  Sum_probs=48.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+||++||++|+++.|.++++++.+++...+.++.+|+++++.++++|++.++||++++++
T Consensus        26 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   90 (133)
T 2dj3_A           26 KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPS   90 (133)
T ss_dssp             SEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECT
T ss_pred             CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeC
Confidence            37899999999999999999999999999753357777777766655555555555555555443

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=4.5e-19  Score=121.36  Aligned_cols=63  Identities=37%  Similarity=0.743  Sum_probs=58.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--CcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+++.|.++++++.+++  .+.++.+|++  ++.+++++|+|+++||+++|+++
T Consensus        37 ~vlV~F~A~wC~~C~~~~p~~~~la~~~~~--~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g  101 (298)
T 3ed3_A           37 TSLVEFYAPWCGHCKKLSSTFRKAAKRLDG--VVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPP  101 (298)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECC
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHccC--CcEEEEEEccCccCHHHHHhCCCCccceEEEEECC
Confidence            689999999999999999999999999987  5888889888  67899999999999999999764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.79  E-value=1.6e-19  Score=112.32  Aligned_cols=64  Identities=14%  Similarity=0.120  Sum_probs=58.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+.+.|.++++++.+++  .+.++.+|++++++++++|+|.++||++++++|
T Consensus        24 k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   87 (149)
T 3gix_A           24 KVLVLRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNG   87 (149)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHTTTTT--TEEEEEEETTTCCHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCcCHHHHHHcCCCccCeEEEEECC
Confidence            3799999999999999999999999999976  589999999999999999999999999888775

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.79  E-value=2.5e-19  Score=104.91  Aligned_cols=63  Identities=14%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+.+.|.++++++.++   ++.++.+|++++++++++|+++++||++++++|
T Consensus        19 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   81 (105)
T 4euy_A           19 QLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNG   81 (105)
T ss_dssp             SEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------CCCCEEEEEETT
T ss_pred             CCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCC
Confidence            378999999999999999999999999984   588888888888888888888888888777654

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.79  E-value=1.4e-20  Score=115.78  Aligned_cols=63  Identities=10%  Similarity=-0.019  Sum_probs=58.8

Q ss_pred             eEEEEEEcCC--CHHHHhhhHHHHHHHHHhccCcc-eEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPG--CGYCKKAKPEYVKAAEVLKDNHK-VALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~w--C~~C~~~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+|  |++|+.+.|.++++++++++  + +.++++|.+++++++++|+|+++||+++|++|
T Consensus        36 ~vlVdF~a~~crCgpCk~iaPvleela~e~~g--~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G  101 (140)
T 2qgv_A           36 DGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD--YTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGG  101 (140)
T ss_dssp             SEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT--SCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETT
T ss_pred             CEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC--CeEEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence            5889999999  99999999999999999987  6 99999999999999999999999999999986

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.79  E-value=8.7e-19  Score=132.30  Aligned_cols=103  Identities=20%  Similarity=0.506  Sum_probs=93.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce---------------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT---------------   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~---------------   66 (116)
                      +++|.||+|||++|+++.|.++++++.+++  .+.++.+|++.+..++++++++++||+++++.+               
T Consensus       565 ~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~  642 (780)
T 3apo_A          565 VWMVDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNR  642 (780)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCC
T ss_pred             eEEEEEECCCCHHHHHhhHHHHHHHHHhhC--CeEEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCC
Confidence            579999999999999999999999999987  799999999999999999999999999998753               


Q ss_pred             -------------------------------------eee-----------------------ceeeEEEEeccCccchh
Q psy3452          67 -------------------------------------IMI-----------------------IRLALAAIDCTEHGPLC   86 (116)
Q Consensus        67 -------------------------------------v~f-----------------------~~~~~~~v~~~~~~~~~   86 (116)
                                                           +.|                       +++.++.+|++.+.+++
T Consensus       643 ~~~~l~~fi~~~~~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~  722 (780)
T 3apo_A          643 DAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTC  722 (780)
T ss_dssp             SHHHHHHHHHTTSCCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHH
T ss_pred             CHHHHHHHHhhhcccccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHH
Confidence                                                 111                       46889999999999999


Q ss_pred             hhcCCCCCCEEEEecCCccc
Q psy3452          87 KEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        87 ~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++|+|+++||++++++|+.+
T Consensus       723 ~~~~v~~~Pt~~~~~~g~~~  742 (780)
T 3apo_A          723 QKAGIKAYPSVKLYQYERAK  742 (780)
T ss_dssp             HHTTCCSSSEEEEEEEETTT
T ss_pred             HhcCCCcCCEEEEEcCCCcc
Confidence            99999999999999887654

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.79  E-value=4.6e-19  Score=105.24  Aligned_cols=79  Identities=38%  Similarity=0.733  Sum_probs=60.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|+||++||++|+++.|.++++++.+++.+                                    ..+.++.+|++
T Consensus        25 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~------------------------------------~~v~~~~vd~~   68 (120)
T 1mek_A           25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEG------------------------------------SEIRLAKVDAT   68 (120)
T ss_dssp             SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTC------------------------------------CCCBCEEEETT
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHHHHHHhccC------------------------------------CcEEEEEEcCC
Confidence            368999999999999999999999999887532                                    12344566666


Q ss_pred             CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+.+++++|+|+++||++++++|+.+....|.|..
T Consensus        69 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~  103 (120)
T 1mek_A           69 EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGR  103 (120)
T ss_dssp             TCCSSHHHHTCCSSSEEEEEESSCSSSCEECCCCS
T ss_pred             CCHHHHHHCCCCcccEEEEEeCCCcCCcccccCcc
Confidence            66777888888888888888777654456666654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.78  E-value=5.2e-19  Score=107.01  Aligned_cols=63  Identities=19%  Similarity=0.383  Sum_probs=50.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+||++||++|+++.|.++++++.+++  ++.++.+|++++++++++++++++||++++++
T Consensus        43 k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~  105 (128)
T 3ul3_B           43 TVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLARKFSVKSLPTIILLKN  105 (128)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHGG--GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEET
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCCcCEEEEEEC
Confidence            4789999999999999999999999999986  67777777776666666666666666665544

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.78  E-value=8.5e-19  Score=102.97  Aligned_cols=62  Identities=32%  Similarity=0.708  Sum_probs=42.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccC-cceEEEEEeCCCcccccccCCccccceEEEc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDN-HKVALAAIDCTEHGPLCKEYDIKGYPTFHHL   63 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   63 (116)
                      +++|+||++||++|+++.|.++++++.+... ..+.++.+|+++++++++++++.++||++++
T Consensus        23 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   85 (111)
T 3uvt_A           23 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF   85 (111)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEE
Confidence            6899999999999999999999999887643 1455555555544444444444444444443

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.78  E-value=1.1e-18  Score=125.61  Aligned_cols=63  Identities=38%  Similarity=0.726  Sum_probs=60.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+++.|.++++++.+++  .+.++++|++++++++++++|+++||+++|++|
T Consensus        23 ~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g   85 (481)
T 3f8u_A           23 LMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDG   85 (481)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCCEEEEETTTCHHHHHHTTCCEESEEEEEETT
T ss_pred             eEEEEEECCCCHHHHHhHHHHHHHHHHhcC--ceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCC
Confidence            789999999999999999999999999987  599999999999999999999999999999887

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.77  E-value=6.6e-19  Score=112.37  Aligned_cols=66  Identities=17%  Similarity=0.316  Sum_probs=58.0

Q ss_pred             eEEEEEEc-------CCCHHHHhhhHHHHHHHHHhccC---cceEEEEEeCCCcccccccCCccccceEEEcCcee
Q psy3452           2 FYSILFYS-------PGCGYCKKAKPEYVKAAEVLKDN---HKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTI   67 (116)
Q Consensus         2 ~v~v~F~a-------~wC~~C~~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v   67 (116)
                      +++|+|||       +||++|+.+.|.++++++++...   +++.++++|++++++++++|+|+++||+++|++|.
T Consensus        39 ~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~siPtl~~F~~g~  114 (178)
T 3ga4_A           39 FNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAE  114 (178)
T ss_dssp             EEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCSSCEEEEECCCC
T ss_pred             cEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCCCCEEEEEcCCC
Confidence            68999999       49999999999999999999711   27899999999999999999999999999988873

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.77  E-value=5.4e-19  Score=105.40  Aligned_cols=63  Identities=22%  Similarity=0.384  Sum_probs=51.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++   +.++.+|++++++++++|++.++||++++++|
T Consensus        32 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   94 (116)
T 3qfa_C           32 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKSMPTFQFFKKG   94 (116)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHTTCTT---SEEEEEETTTTHHHHHHTTCCSSSEEEEESSS
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCccccEEEEEeCC
Confidence            3689999999999999999999999998864   78888888777777777777777777766654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.77  E-value=8.6e-19  Score=105.30  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=54.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.+++++++++   .+.|+++|+++.   +++|+|+++||+++|++|
T Consensus        25 ~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~---~~~~~v~~~PT~~~fk~G   83 (118)
T 3evi_A           25 WVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC---IQHYHDNCLPTIFVYKNG   83 (118)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT---STTCCGGGCSEEEEEETT
T ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HHHCCCCCCCEEEEEECC
Confidence            79999999999999999999999999986   589999999875   588999999999999886

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.77  E-value=9.3e-19  Score=102.89  Aligned_cols=64  Identities=17%  Similarity=0.335  Sum_probs=53.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+.+.|.++++++.+++  ++.++.+|+++++.+++++++.++||++++++|
T Consensus        23 ~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g   86 (111)
T 3gnj_A           23 KACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDG   86 (111)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSCEEEEEETT
T ss_pred             CEEEEEEeCCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCcChhHHHhcCCCcCCEEEEEECC
Confidence            3689999999999999999999999999986  688888888877777777777777777776553

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=1.7e-18  Score=105.87  Aligned_cols=65  Identities=43%  Similarity=0.722  Sum_probs=52.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+||++||++|+++.|.++++++.+++.. .+.++.+|++++.+++++|++..+||++++++
T Consensus        35 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  100 (140)
T 2dj1_A           35 DTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKK  100 (140)
T ss_dssp             SEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEEEEC
Confidence            378999999999999999999999999997642 37777777777777777777777777776655

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.77  E-value=9.2e-19  Score=103.27  Aligned_cols=63  Identities=22%  Similarity=0.396  Sum_probs=52.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|++++.+++++++++++||++++++|
T Consensus        25 k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   87 (109)
T 3f3q_A           25 KLVVVDFYATWCGPCKMIAPMIEKFSEQYP---QADFYKLDVDELGDVAQKNEVSAMPTLLLFKNG   87 (109)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCccCEEEEEECC
Confidence            368999999999999999999999999986   478888888877777777777777777777653

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.77  E-value=4.2e-18  Score=118.60  Aligned_cols=111  Identities=18%  Similarity=0.348  Sum_probs=94.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--CcccccccCCccc--cceEEEcCce-----------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKG--YPTFHHLALT-----------   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~--~Pt~~~~~~~-----------   66 (116)
                      ++++.||++||++|+++.|.++++++.+++  ++.++.+|++  ++..+++.|+++.  +|++++++.+           
T Consensus       137 ~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~--~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~  214 (361)
T 3uem_A          137 THILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESE  214 (361)
T ss_dssp             EEEEEECCSSSSSHHHHHHHHHHHHGGGTT--TCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSC
T ss_pred             cEEEEEEeCCchhHHHHHHHHHHHHHHccC--ceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCcccccCCCcc
Confidence            468999999999999999999999999998  7999999999  6889999999987  9999988752           


Q ss_pred             ---------------------------------------------------------eee--------------------
Q psy3452          67 ---------------------------------------------------------IMI--------------------   69 (116)
Q Consensus        67 ---------------------------------------------------------v~f--------------------   69 (116)
                                                                               +.|                    
T Consensus       215 ~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~  294 (361)
T 3uem_A          215 ELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGE  294 (361)
T ss_dssp             CCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHH
Confidence                                                                     111                    


Q ss_pred             -----ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          70 -----IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        70 -----~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                           ..+.++.+|+..+.  +++|+|+++||+++|++|+......|.|..+
T Consensus       295 ~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~  344 (361)
T 3uem_A          295 TYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERT  344 (361)
T ss_dssp             HTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSSSCCCEECCSCSS
T ss_pred             HhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCCCcceeEecCCCC
Confidence                 24889999988776  6899999999999997774445788999764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.76  E-value=1.6e-18  Score=101.00  Aligned_cols=64  Identities=20%  Similarity=0.355  Sum_probs=53.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|++++++++++++++++||++++++|
T Consensus        20 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   83 (106)
T 3die_A           20 GVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENPSTAAKYEVMSIPTLIVFKDG   83 (106)
T ss_dssp             SEEEEEEECSBCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSBSEEEEEETT
T ss_pred             CcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEECCcCHHHHHhCCCcccCEEEEEeCC
Confidence            3789999999999999999999999999986  588888888877777777777777777776653

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.76  E-value=1.3e-18  Score=102.04  Aligned_cols=63  Identities=17%  Similarity=0.376  Sum_probs=53.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   ++.++.+|++++++++++++++++||++++++|
T Consensus        22 ~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   84 (107)
T 1gh2_A           22 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQFFRNK   84 (107)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHhcCCCcccEEEEEECC
Confidence            368999999999999999999999999984   588888888888878888888888887777654

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.76  E-value=2e-18  Score=102.18  Aligned_cols=64  Identities=23%  Similarity=0.336  Sum_probs=57.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  ++.++.+|+++++++++++++.++||++++++|
T Consensus        18 ~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   81 (112)
T 2voc_A           18 GVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQETAGKYGVMSIPTLLVLKDG   81 (112)
T ss_dssp             SEEEEEEECTTBGGGGGHHHHHHHHHHHHTT--TCEEEEEETTTCCSHHHHTTCCSBSEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCCcccEEEEEeCC
Confidence            3789999999999999999999999999986  689999999988888888888888888887653

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.76  E-value=1.8e-18  Score=103.48  Aligned_cols=63  Identities=30%  Similarity=0.653  Sum_probs=56.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+++.|.++++++.+++  .+.++.+|++++++++++++++++||+++++++
T Consensus        23 ~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   85 (122)
T 3aps_A           23 HWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYE   85 (122)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCHHHHHHcCCCccceEEEEeCC
Confidence            689999999999999999999999999987  689999999988888888888888888888654

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3.7e-18  Score=102.78  Aligned_cols=64  Identities=33%  Similarity=0.484  Sum_probs=52.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++|+||++||++|+++.|.++++++.+++. .+.++.+|++++.+++++|+++++||++++++|
T Consensus        24 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   87 (126)
T 1x5e_A           24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTEQPGLSGRFIINALPTIYHCKDG   87 (126)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECcCCHHHHHHcCCcccCEEEEEeCC
Confidence            3799999999999999999999999998752 478888888877777777777777777777553

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.76  E-value=2.9e-18  Score=100.36  Aligned_cols=63  Identities=22%  Similarity=0.386  Sum_probs=53.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++
T Consensus        21 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   83 (108)
T 2trx_A           21 GAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN   83 (108)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEEEEET
T ss_pred             CeEEEEEECCCCHhHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCcccCEEEEEeC
Confidence            3789999999999999999999999999976  68888888888777777777777777777654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.76  E-value=2.6e-18  Score=96.55  Aligned_cols=60  Identities=30%  Similarity=0.355  Sum_probs=54.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      |++++.||++||++|+++.|.++++++.+++  ++.+..+|+++++++++++++.++||+++
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVI   62 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEE
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHCCCcccCEEEE
Confidence            6789999999999999999999999999986  68999999988888888888888888887

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.75  E-value=4.1e-18  Score=103.33  Aligned_cols=64  Identities=20%  Similarity=0.317  Sum_probs=55.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        41 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G  104 (128)
T 2o8v_B           41 GAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG  104 (128)
T ss_dssp             SEEEEEEECSSCHHHHHTHHHHHHHHHHTTT--TEEEEEEETTTCCTTSGGGTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCccCEEEEEeCC
Confidence            3789999999999999999999999999986  688999988888888888888888888877553

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.75  E-value=2.1e-18  Score=105.57  Aligned_cols=62  Identities=19%  Similarity=0.398  Sum_probs=49.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      .+++|+||++||++|+.+.|.++++++.+++  .+.++.+|++.+.+++++|++.++||+++++
T Consensus        52 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~  113 (141)
T 3hxs_A           52 KPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEPELARDFGIQSIPTIWFVP  113 (141)
T ss_dssp             SCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEECCCCHHHHHHcCCCCcCEEEEEe
Confidence            3689999999999999999999999999986  5777777777766666666666666666653

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=1.5e-18  Score=104.85  Aligned_cols=61  Identities=36%  Similarity=0.770  Sum_probs=42.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL   63 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   63 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|++++.+++++++++++||++++
T Consensus        36 ~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   96 (130)
T 2dml_A           36 GLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQSLGGQYGVQGFPTIKIF   96 (130)
T ss_dssp             SCEEEEEECTTCSTTGGGHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHHTCCSSSEEEEE
T ss_pred             CeEEEEEECCCCHHHHhhCHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHcCCCccCEEEEE
Confidence            3689999999999999999999999999876  466656555544444433333333333333

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=104.45  Aligned_cols=66  Identities=38%  Similarity=0.697  Sum_probs=53.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhcc--CcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKD--NHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.+.++.+|++.+.+++++|+++++||++++++|
T Consensus        26 ~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g   93 (133)
T 1x5d_A           26 DVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG   93 (133)
T ss_dssp             SEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCC
Confidence            3789999999999999999999999999872  01588888888877777777777777777777663

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.75  E-value=2.5e-18  Score=107.48  Aligned_cols=64  Identities=30%  Similarity=0.548  Sum_probs=55.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+.+.|.++++++.+++  ++.++++|++++++++++|+++++||++++++|
T Consensus        65 ~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G  128 (155)
T 2ppt_A           65 LPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKG  128 (155)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTSTHHHHHTTCCSSSEEEEEETT
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHHHHHccC--CEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCC
Confidence            3689999999999999999999999999987  688888888888888888888888888777654

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.75  E-value=3.3e-18  Score=100.05  Aligned_cols=64  Identities=20%  Similarity=0.342  Sum_probs=52.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        22 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g   85 (109)
T 3tco_A           22 KLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDENQKIADKYSVLNIPTTLIFVNG   85 (109)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCCHHHHhhhHHHHHHHHHhCC--CceEEEEccccCHHHHHhcCcccCCEEEEEcCC
Confidence            3689999999999999999999999999987  577888887777777777777777777666543

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1.6e-18  Score=105.91  Aligned_cols=53  Identities=11%  Similarity=0.273  Sum_probs=44.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK   55 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~   55 (116)
                      +++|+|||+||++|+++.|.++++++.+++. ++.++.+|++++++++++|++.
T Consensus        28 ~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~   80 (137)
T 2dj0_A           28 TWIVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYTDVSTRYKVS   80 (137)
T ss_dssp             CEEEEECCTTCSTTTTTHHHHHHHHHHHCSS-SCEEEECCTTTCHHHHHHTTCC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCccCHHHHHHccCc
Confidence            6899999999999999999999999999743 4777777777777776666665

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.75  E-value=3.3e-18  Score=100.85  Aligned_cols=64  Identities=19%  Similarity=0.349  Sum_probs=54.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        24 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   87 (112)
T 1t00_A           24 KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGG   87 (112)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCCHhHHhcCHHHHHHHHHhcC--CeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCC
Confidence            3689999999999999999999999999976  588888888888777777777777777776653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=1.4e-18  Score=117.63  Aligned_cols=64  Identities=17%  Similarity=0.300  Sum_probs=58.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+|+|+||++||++|+.+.|.++++++.+++  ++.++++|++++++++++|+|+++||++++++|
T Consensus        27 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   90 (287)
T 3qou_A           27 TPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNG   90 (287)
T ss_dssp             SCEEEEEECTTCTTTTTTHHHHHHHHHHHTS--SSEEEEEETTTCHHHHHTTTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEEeCccCHHHHHHcCCCCCCeEEEEECC
Confidence            3789999999999999999999999999987  689999999999888889999999988888764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.75  E-value=3.3e-18  Score=99.69  Aligned_cols=63  Identities=24%  Similarity=0.365  Sum_probs=53.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|.||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        19 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   81 (105)
T 1nsw_A           19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILFKGG   81 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHSTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECcCCHHHHHHcCCccccEEEEEeCC
Confidence            689999999999999999999999999876  588888888888777777777777777777553

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.75  E-value=2.2e-18  Score=105.84  Aligned_cols=63  Identities=25%  Similarity=0.551  Sum_probs=58.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        26 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   88 (140)
T 3hz4_A           26 PVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNPWTAEKYGVQGTPTFKFFCHG   88 (140)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTCHHHHHHHTCCEESEEEEEETT
T ss_pred             cEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCC
Confidence            689999999999999999999999999987  699999999999999999999999999988764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.75  E-value=1.3e-17  Score=111.20  Aligned_cols=108  Identities=13%  Similarity=0.134  Sum_probs=89.1

Q ss_pred             eEEEEEEcCC--CHHHHhhhHHHHHHHHHhcc-Ccc--eEEEEEeCCCcccccccCCccccceEEEcCce----------
Q psy3452           2 FYSILFYSPG--CGYCKKAKPEYVKAAEVLKD-NHK--VALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----------   66 (116)
Q Consensus         2 ~v~v~F~a~w--C~~C~~~~~~~~~~~~~~~~-~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----------   66 (116)
                      +++|.||++|  |++|+.+.+.++++++.++. +++  +.++.+|++++++++++|+|+++||++++++.          
T Consensus        27 pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~~g~~~~~G~~~~~  106 (243)
T 2hls_A           27 PVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGEVRWTGIPAGE  106 (243)
T ss_dssp             CEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEETTTTEEEESCCCTT
T ss_pred             CEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEECCceeEcCCCcHH
Confidence            6899999999  99999999999999988531 113  99999999999999999999999999998432          


Q ss_pred             ------------------------------------eee---------------------c------eeeEEEEeccCcc
Q psy3452          67 ------------------------------------IMI---------------------I------RLALAAIDCTEHG   83 (116)
Q Consensus        67 ------------------------------------v~f---------------------~------~~~~~~v~~~~~~   83 (116)
                                                          +.|                     .      ++.+..+|++.+.
T Consensus       107 ~l~~fv~~~l~~~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~  186 (243)
T 2hls_A          107 EIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP  186 (243)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH
T ss_pred             HHHHHHHHHHhccCCCCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH
Confidence                                                112                     1      4788899999999


Q ss_pred             chhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          84 PLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        84 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +++++|+|+++||+++  +|+.    .|.|..
T Consensus       187 ~~~~~~~V~~vPt~~i--~G~~----~~~G~~  212 (243)
T 2hls_A          187 DIADKYGVMSVPSIAI--NGYL----VFVGVP  212 (243)
T ss_dssp             HHHHHTTCCSSSEEEE--TTEE----EEESCC
T ss_pred             HHHHHcCCeeeCeEEE--CCEE----EEeCCC
Confidence            9999999999999998  5542    266654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.75  E-value=1.2e-17  Score=99.70  Aligned_cols=75  Identities=28%  Similarity=0.558  Sum_probs=55.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccC---cceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDN---HKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .+++|+||++||++|+++.|.++++++.+++.   ..+.++.+|++++                                
T Consensus        26 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------------------------   73 (121)
T 2djj_A           26 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN--------------------------------   73 (121)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS--------------------------------
T ss_pred             CCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc--------------------------------
Confidence            36899999999999999999999999999752   1355555555433                                


Q ss_pred             eccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                           . +++  +|+++||+++|++|+++....|.|..
T Consensus        74 -----~-~~~--~v~~~Pt~~~~~~~~~~~~~~~~G~~  103 (121)
T 2djj_A           74 -----D-VPD--EIQGFPTIKLYPAGAKGQPVTYSGSR  103 (121)
T ss_dssp             -----C-CSS--CCSSSSEEEEECSSCTTSCCCCCCCS
T ss_pred             -----c-ccc--ccCcCCeEEEEeCcCCCCceEecCCC
Confidence                 2 333  88889999888887664346677754

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.74  E-value=1.9e-18  Score=97.15  Aligned_cols=60  Identities=25%  Similarity=0.372  Sum_probs=54.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      |+.++.||++||++|+++.|.++++++.+++  ++.+..+|+++++++++++++.++||+++
T Consensus         2 m~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   61 (85)
T 1nho_A            2 VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI   61 (85)
T ss_dssp             CCCEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE
T ss_pred             eEEEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhCCceeeCEEEE
Confidence            6789999999999999999999999999986  68899999998888888888888888887

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.74  E-value=7.3e-18  Score=121.06  Aligned_cols=84  Identities=26%  Similarity=0.464  Sum_probs=65.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+|||+||++|+++.|.++++++.+++...           +...                    +.+.++.+|++.
T Consensus        44 ~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g-----------~~~~--------------------~~v~f~~VD~d~   92 (470)
T 3qcp_A           44 PWIVLFYNDGCGACRRYASTFSKFAGGLKVEHG-----------KDAL--------------------QIATAAAVNCAS   92 (470)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSC-----------SSGG--------------------GGCEEEEEETTT
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcc-----------cccC--------------------ceEEEEEEECCC
Confidence            689999999999999999999999999874210           0000                    135667778787


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.+++++|+|+++||+++|++|+......|.|..+
T Consensus        93 ~~~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~  127 (470)
T 3qcp_A           93 EVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSS  127 (470)
T ss_dssp             CHHHHHHTTCCSSCEEEEEEESSCCCTTSCCCCCC
T ss_pred             CHHHHHHcCCCccCeEEEEECCCceEEEEeeCCCC
Confidence            88889999999999999997776656778888653

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.74  E-value=4.2e-18  Score=99.53  Aligned_cols=64  Identities=25%  Similarity=0.405  Sum_probs=51.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        20 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   83 (107)
T 1dby_A           20 VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVFKGG   83 (107)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEESSS
T ss_pred             CcEEEEEECCCCHhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCC
Confidence            3689999999999999999999999999876  577888887777777777777777776666543

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.74  E-value=3.4e-18  Score=100.66  Aligned_cols=64  Identities=22%  Similarity=0.322  Sum_probs=54.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|++++.+++++|++.++||++++++|
T Consensus        25 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   88 (112)
T 1ep7_A           25 KPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDG   88 (112)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBSSEEEEEETT
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchHHHHHHcCCCcccEEEEEECC
Confidence            3689999999999999999999999999976  688888888888877888888888887777653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.74  E-value=3.9e-18  Score=105.39  Aligned_cols=64  Identities=22%  Similarity=0.421  Sum_probs=52.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+.+  .+.++.+|++++++++++|++.++||++++++|
T Consensus        56 k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G  119 (148)
T 3p2a_A           56 LPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNG  119 (148)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHHHHHcCC--ceEEEEEECcCCHHHHHHCCCCccCEEEEEECC
Confidence            3689999999999999999999999999976  577878877777777767776666666666543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.74  E-value=8.3e-18  Score=121.71  Aligned_cols=76  Identities=39%  Similarity=0.758  Sum_probs=54.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+|||+||++|+++.|.|+++++.+++. .+.+                                     +.+||+.
T Consensus        33 ~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-~v~~-------------------------------------~~vd~~~   74 (504)
T 2b5e_A           33 LVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITL-------------------------------------AQIDCTE   74 (504)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEE-------------------------------------EEEETTT
T ss_pred             eEEEEEECCCCHHHHHhHHHHHHHHHHhccC-CeEE-------------------------------------EEEECCC
Confidence            6899999999999999999999999999763 2444                                     4555555


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+++++|+|+++||+++|++|+......|.|..
T Consensus        75 ~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~  108 (504)
T 2b5e_A           75 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPR  108 (504)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETTCTTCEEECCSCC
T ss_pred             CHHHHHhcCCCcCCEEEEEeCCccccceeecCCC
Confidence            5566666666777777777665532235566654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.74  E-value=8.8e-18  Score=97.98  Aligned_cols=63  Identities=19%  Similarity=0.363  Sum_probs=52.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|.||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++
T Consensus        21 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   83 (107)
T 2i4a_A           21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNPETPNAYQVRSIPTLMLVRD   83 (107)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--SEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred             CEEEEEEECCCChhHHHHhHHHHHHHHHhCC--cEEEEEEECCCCHHHHHhcCCCccCEEEEEeC
Confidence            3789999999999999999999999999976  68888888877777777777777777776654

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.74  E-value=6.5e-18  Score=103.17  Aligned_cols=60  Identities=20%  Similarity=0.406  Sum_probs=53.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL   63 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   63 (116)
                      +++|+||++||++|+++.|.++++++.+++  .+.++.+|++++.+++++|++.++||++++
T Consensus        40 ~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   99 (136)
T 2l5l_A           40 PAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQELAGAFGIRSIPSILFI   99 (136)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             EEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHcCCCCCCEEEEE
Confidence            689999999999999999999999999976  688888888888888888888888888877

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.74  E-value=5.9e-18  Score=98.50  Aligned_cols=63  Identities=24%  Similarity=0.437  Sum_probs=52.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++   +.++.+|+++++++++++++.++||++++++|
T Consensus        21 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (105)
T 3m9j_A           21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASESEVKSMPTFQFFKKG   83 (105)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHSTT---SEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CeEEEEEECCCChhhHHHHHHHHHHHHHccC---eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECC
Confidence            3689999999999999999999999999863   78888888777777777777777777776553

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.9e-18  Score=100.60  Aligned_cols=65  Identities=17%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+... .+.++.+|+++++++++++++.++||++++++|
T Consensus        22 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   86 (112)
T 3d6i_A           22 KLIVLYFHTSWAEPCKALKQVFEAISNEPSNS-NVSFLSIDADENSEISELFEISAVPYFIIIHKG   86 (112)
T ss_dssp             CCEEEEEECCC--CHHHHHHHHHHHHHCGGGT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC-CEEEEEEecccCHHHHHHcCCCcccEEEEEECC
Confidence            36899999999999999999999999986332 478888888877777777777777777766553

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.73  E-value=5.8e-18  Score=102.33  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=54.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|++++++++++|++.++||++++++|
T Consensus        38 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~~G  100 (125)
T 1r26_A           38 ILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSG  100 (125)
T ss_dssp             SCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCcccEEEEEeCC
Confidence            368999999999999999999999999984   588899998888888888888888888877654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.73  E-value=8e-18  Score=100.11  Aligned_cols=63  Identities=29%  Similarity=0.410  Sum_probs=53.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++   +.++.+|+++++++++++++.++||++++++|
T Consensus        31 k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   93 (114)
T 2oe3_A           31 DKLVIDFYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESPDIAKECEVTAMPTFVLGKDG   93 (114)
T ss_dssp             SEEEEEEECTTCHHHHHTHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSBSEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Confidence            3789999999999999999999999999864   88888888888777777777777777776553

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.73  E-value=7.3e-18  Score=100.76  Aligned_cols=63  Identities=27%  Similarity=0.405  Sum_probs=53.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+++.|.++++++.+++  .+.++.+|++++.+++++|++.++||++++++|
T Consensus        33 ~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   95 (119)
T 1w4v_A           33 PVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNG   95 (119)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTT--SSEEEEEETTTTHHHHHHTTCCSSSEEEEEETT
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCHHHHHHcCCCcccEEEEEeCC
Confidence            689999999999999999999999999876  588888888887777777777777777777543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.73  E-value=9.6e-18  Score=110.20  Aligned_cols=64  Identities=22%  Similarity=0.374  Sum_probs=60.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+.+.|.++++++.+++  .+.++.+|++.++.++++|++.++||++++++|
T Consensus        31 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   94 (222)
T 3dxb_A           31 GAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG   94 (222)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCTTTGGGGTCCSBSEEEEEETT
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence            3689999999999999999999999999987  699999999999999999999999999999875

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.73  E-value=7.2e-18  Score=99.36  Aligned_cols=63  Identities=32%  Similarity=0.468  Sum_probs=50.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|++ ++.+++++++++++||++++++|
T Consensus        25 ~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G   88 (111)
T 2pu9_C           25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKEN   88 (111)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSS
T ss_pred             CEEEEEEECCcCHhHHHHCHHHHHHHHHCC---CeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCC
Confidence            368999999999999999999999999986   3788888887 56666666677666766666553

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.73  E-value=9.6e-18  Score=101.12  Aligned_cols=63  Identities=24%  Similarity=0.430  Sum_probs=55.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|++++.+++++|++.++||++++++|
T Consensus        39 k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G  101 (124)
T 1xfl_A           39 TLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEG  101 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCCccCEEEEEECC
Confidence            378999999999999999999999999986   588999999888888888888888888877654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.73  E-value=8.2e-18  Score=100.56  Aligned_cols=61  Identities=18%  Similarity=0.410  Sum_probs=56.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++|+||++||++|+.+.|.++++++.+ +  .+.++.+|++++.+++++|++.++||++++++
T Consensus        25 ~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~--~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~   85 (118)
T 2f51_A           25 LVLVDFFATWCGPCQRLGQILPSIAEAN-K--DVTFIKVDVDKNGNAADAYGVSSIPALFFVKK   85 (118)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHC-T--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHC-C--CeEEEEEECCCCHHHHHhcCCCCCCEEEEEeC
Confidence            6899999999999999999999999998 3  69999999999999999999999999998876

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.73  E-value=1.2e-17  Score=97.20  Aligned_cols=64  Identities=28%  Similarity=0.519  Sum_probs=54.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        21 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   84 (106)
T 1xwb_A           21 KLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTFVFLKNG   84 (106)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCcCHHHHHhhHHHHHHHHHhCC--CeEEEEEeccchHHHHHHcCCCcccEEEEEcCC
Confidence            3789999999999999999999999999865  688888888888777777777777777777553

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.73  E-value=1.2e-17  Score=97.14  Aligned_cols=64  Identities=23%  Similarity=0.417  Sum_probs=54.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   82 (105)
T 1fb6_A           19 VPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG   82 (105)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CcEEEEEECCCChHHHHHHHHHHHHHHHhcC--ceEEEEEcCcchHHHHHhCCCCcccEEEEEeCC
Confidence            3689999999999999999999999999976  588888888888777777887777877777653

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.72  E-value=1.6e-17  Score=97.02  Aligned_cols=64  Identities=19%  Similarity=0.301  Sum_probs=55.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+.+.|.++++++.+++  ++.++.+|+++++++++++++.++||++++++|
T Consensus        19 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   82 (109)
T 2yzu_A           19 PLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLDVDENPKTAMRYRVMSIPTVILFKDG   82 (109)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--ceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCC
Confidence            3689999999999999999999999999986  688888888888888888888888888777553

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.72  E-value=1.3e-17  Score=99.41  Aligned_cols=63  Identities=17%  Similarity=0.308  Sum_probs=55.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|.||++||++|+++.|.++++++.+++  .+.++.+|+++++.+++++++.++||++++++|
T Consensus        32 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g   94 (121)
T 2i1u_A           32 PVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNPETARNFQVVSIPTLILFKDG   94 (121)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhcCCCcCCEEEEEECC
Confidence            689999999999999999999999999876  688899998888888888888888888877654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.72  E-value=2.6e-17  Score=118.37  Aligned_cols=78  Identities=28%  Similarity=0.574  Sum_probs=59.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+++|+|||+||++|+++.|.++++++.+++...+.++++                                     |++
T Consensus       371 k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~i-------------------------------------d~~  413 (481)
T 3f8u_A          371 KDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKM-------------------------------------DAT  413 (481)
T ss_dssp             CEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEE-------------------------------------ETT
T ss_pred             CcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEE-------------------------------------ECC
Confidence            3789999999999999999999999999986434555444                                     444


Q ss_pred             CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      .+ +++++|+|+++||+++|++|+++....|.|..+
T Consensus       414 ~~-~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~  448 (481)
T 3f8u_A          414 AN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRE  448 (481)
T ss_dssp             SS-CCCTTCCCCSSSEEEEECTTCTTSCEECCSCCS
T ss_pred             ch-hhHhhCCCcccCEEEEEeCCCeEeeeEeCCCCC
Confidence            44 455677788888888887777655677777653

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.72  E-value=9.9e-18  Score=104.34  Aligned_cols=63  Identities=17%  Similarity=0.378  Sum_probs=58.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|++++++++++|+++++||++++++|
T Consensus        33 ~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   95 (153)
T 2wz9_A           33 SLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNS   95 (153)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence            368999999999999999999999999984   699999999999999999999999999999865

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.72  E-value=1.3e-17  Score=98.45  Aligned_cols=63  Identities=19%  Similarity=0.406  Sum_probs=53.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|.||++||++|+++.|.++++++.+++  .+.++.+|+++++++++++++.++||++++++|
T Consensus        27 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   89 (115)
T 1thx_A           27 PVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGE   89 (115)
T ss_dssp             CEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             eEEEEEECCCCHHHHHhHHHHHHHHHHhCC--cEEEEEEEcCCCHHHHHHcCCCceeEEEEEcCC
Confidence            689999999999999999999999999986  588888888888777777777777777777553

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.72  E-value=1.3e-17  Score=99.62  Aligned_cols=63  Identities=21%  Similarity=0.474  Sum_probs=52.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+++   +.++.+|++++++++++|++.++||++++++|
T Consensus        35 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   97 (122)
T 2vlu_A           35 KLVVIDFTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAMPTFLFMKEG   97 (122)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---cEEEEEECCCCHHHHHHcCCCcccEEEEEeCC
Confidence            3689999999999999999999999998873   78888888887777777777777777776553

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.72  E-value=3e-17  Score=100.04  Aligned_cols=79  Identities=16%  Similarity=0.223  Sum_probs=60.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .+++|+||++||++|+++.|.+   .++.+.++   .+.++.+|++...                               
T Consensus        32 k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~-------------------------------   77 (134)
T 2fwh_A           32 KPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTAND-------------------------------   77 (134)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCC-------------------------------
T ss_pred             CcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCc-------------------------------
Confidence            3689999999999999999999   88888886   3778888776532                               


Q ss_pred             eccCccchhhhcCCCCCCEEEEe-cCCcccCCcCCCCCC
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYF-HYFNKQSPSPYHNDY  115 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~y~g~~  115 (116)
                        +.+.+++++|+|.++||++++ ++|+.+....+.|..
T Consensus        78 --~~~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~  114 (134)
T 2fwh_A           78 --AQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFM  114 (134)
T ss_dssp             --HHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCC
T ss_pred             --chHHHHHHHcCCCCCCEEEEECCCCCEeeeeeeeecc
Confidence              335678889999999999999 444442224566653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.71  E-value=1.4e-17  Score=100.20  Aligned_cols=62  Identities=21%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe--CCCcccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID--CTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd--~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|  ++++.+++++|++.++||+++++
T Consensus        27 k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~   90 (126)
T 2l57_A           27 IPTIIMFKTDTCPYCVEMQKELSYVSKEREG--KFNIYYARLEEEKNIDLAYKYDANIVPTTVFLD   90 (126)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHHHHHSSS--SCEEEEEETTSSHHHHHHHHTTCCSSSEEEEEC
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCchHHHHHHcCCcceeEEEEEC
Confidence            3689999999999999999999999999974  68899999  77777888888888888888877

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.71  E-value=2.1e-17  Score=97.64  Aligned_cols=63  Identities=22%  Similarity=0.443  Sum_probs=53.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|+++++++++++++.++||++++++|
T Consensus        27 k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   89 (112)
T 1syr_A           27 ELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNG   89 (112)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCHHHHHHcCCCcccEEEEEECC
Confidence            378999999999999999999999999886   488888888888878888888888887777654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.71  E-value=1.2e-17  Score=99.57  Aligned_cols=77  Identities=14%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+||++||++|+++.|.++++++.++.  .+.+  +|++...                               +.+.
T Consensus        31 ~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~--~v~~--~~~~~~~-------------------------------~~~~   75 (118)
T 1zma_A           31 TATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYF--INSEEPS-------------------------------QLND   75 (118)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEE--EETTCGG-------------------------------GHHH
T ss_pred             eEEEEEECCCCccHHHHHHHHHHHHHhcCC--eEEE--EECCCcC-------------------------------cHHH
Confidence            689999999999999999999999998753  3333  3443321                               1133


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ..+++++|+|+++||++++++|+.+  ..+.|..
T Consensus        76 ~~~~~~~~~i~~~Pt~~~~~~G~~~--~~~~G~~  107 (118)
T 1zma_A           76 LQAFRSRYGIPTVPGFVHITDGQIN--VRCDSSM  107 (118)
T ss_dssp             HHHHHHHHTCCSSCEEEEEETTEEE--EECCTTC
T ss_pred             HHHHHHHcCCCCCCeEEEEECCEEE--EEecCCC
Confidence            4567888999999999888877654  4455543

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.71  E-value=1.8e-17  Score=101.32  Aligned_cols=63  Identities=24%  Similarity=0.380  Sum_probs=56.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|++++.+++++|++.++||++++++|
T Consensus        47 k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G  109 (139)
T 3d22_A           47 KIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKATPTFFFLRDG  109 (139)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCEESEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccHHHHHHcCCCcccEEEEEcCC
Confidence            368999999999999999999999999985   589999999999999999999999999888664

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.71  E-value=2.1e-17  Score=107.63  Aligned_cols=62  Identities=24%  Similarity=0.659  Sum_probs=45.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      .+++|+||++||++|+++.|.++++++.+++  .+.++.+|+++++.+++++++.++||+++++
T Consensus       115 ~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~  176 (210)
T 3apq_A          115 ELWFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR  176 (210)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred             CcEEEEEeCCCChhHHHHHHHHHHHHHHhcC--ceEEEEEECCccHHHHHHcCCCcCCeEEEEE
Confidence            3689999999999999999999999999976  5666666665555444444444444444443

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.71  E-value=8.3e-18  Score=99.29  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=49.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++|+||++||++|+++.|.++++++.++   .+.++.+|++++++++++++++++||++++++
T Consensus        21 ~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   81 (110)
T 2l6c_A           21 DAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARPELMKELGFERVPTLVFIRD   81 (110)
T ss_dssp             EEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEES
T ss_pred             CEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCHHHHHHcCCcccCEEEEEEC
Confidence            68999999999999999999999988875   47777777777777777777777777776654

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.71  E-value=1.7e-17  Score=99.50  Aligned_cols=62  Identities=34%  Similarity=0.534  Sum_probs=49.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+||++||++|+++.|.++++++.++   .+.++.+|++ ++.+++++++++++||++++++
T Consensus        38 ~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~  100 (124)
T 1faa_A           38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKE  100 (124)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSSSEEEEEET
T ss_pred             CEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcchHHHHHHcCCCeeeEEEEEeC
Confidence            368999999999999999999999999886   3778888876 4566666666666666666554

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.71  E-value=1.7e-17  Score=98.70  Aligned_cols=62  Identities=21%  Similarity=0.452  Sum_probs=52.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||++|+++.|.++++++.+    .+.++.+|+++++++++++++.++||++++++|
T Consensus        34 ~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G   95 (117)
T 2xc2_A           34 KLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTFIAIKNG   95 (117)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccceEEEEeCC
Confidence            36899999999999999999999998877    478888888888877778888888887777653

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=4.1e-17  Score=99.76  Aligned_cols=59  Identities=12%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.++   .+.++++|+++..   ++|+|..+||+++|++|
T Consensus        32 ~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~~---~~~~i~~~Pt~~~~~~G   90 (135)
T 2dbc_A           32 WVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSCI---EHYHDNCLPTIFVYKNG   90 (135)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSSC---SSCCSSCCSEEEEESSS
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcCc---ccCCCCCCCEEEEEECC
Confidence            79999999999999999999999999985   5899999998875   68899999999998875

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.71  E-value=1.8e-17  Score=100.55  Aligned_cols=61  Identities=16%  Similarity=0.280  Sum_probs=45.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHH--HHHHHhccCcceEEEEEeC---CCcccccccCCc---cccceEEEc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYV--KAAEVLKDNHKVALAAIDC---TEHGPLCKEYDI---KGYPTFHHL   63 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~--~~~~~~~~~~~~~~~~vd~---~~~~~~~~~~~v---~~~Pt~~~~   63 (116)
                      .+++|+||++||++|+.+.|.++  ++.+.+++  .+.++.+|+   +++.+++++|++   .++||++++
T Consensus        30 k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~   98 (133)
T 3fk8_A           30 KPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVV   98 (133)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEE
T ss_pred             CcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEE
Confidence            47899999999999999999999  99998865  688888887   444444444444   444444444

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.70  E-value=3.1e-17  Score=95.17  Aligned_cols=63  Identities=21%  Similarity=0.455  Sum_probs=53.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+++.|.++++++.++   ++.++.+|+++++++++++++.++||++++++|
T Consensus        20 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   82 (104)
T 2vim_A           20 RLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG   82 (104)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence            368999999999999999999999999886   588888888888877888888888887777654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.70  E-value=3.8e-18  Score=104.23  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+|||+||++|+++.|.++++++.++    +.++.+|++.....                            ...+.
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~----------------------------~~~d~   80 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGE----------------------------RELSA   80 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCH----------------------------HHHHH
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhh----------------------------hhhhh
Confidence            48999999999999999999999998874    77788887433210                            01134


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcc
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      +.+++++|+|+++||++++++|+.
T Consensus        81 ~~~l~~~~~v~~~Pt~~~~~~G~~  104 (135)
T 3emx_A           81 ARLEMNKAGVEGTPTLVFYKEGRI  104 (135)
T ss_dssp             HHHHHHHHTCCSSSEEEEEETTEE
T ss_pred             hHHHHHHcCCceeCeEEEEcCCEE
Confidence            455666666666666666665543

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.70  E-value=1.5e-17  Score=101.48  Aligned_cols=60  Identities=28%  Similarity=0.343  Sum_probs=53.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      .+++|+||++||++|+++.|.++++++.+    .+.++.+|++++.+++++|+++++||+++++
T Consensus        41 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~  100 (133)
T 3cxg_A           41 SSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALPTFEFYF  100 (133)
T ss_dssp             SEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCCEEEEEE
Confidence            37899999999999999999999987766    4889999999888888888888888888883

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.70  E-value=1.5e-17  Score=105.36  Aligned_cols=62  Identities=13%  Similarity=0.030  Sum_probs=54.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCC---ccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYD---IKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~---v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.++   ++.+..+|.+++++++++|.   +.++||+++++++
T Consensus        56 ~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~  120 (167)
T 1z6n_A           56 YRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEE  120 (167)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTT
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCC
Confidence            68999999999999999999999998875   58899999998888888886   8888888888763

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.70  E-value=4.2e-17  Score=96.68  Aligned_cols=63  Identities=21%  Similarity=0.406  Sum_probs=55.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+++.|.++++++.++   .+.++.+|+++++++++++++.++||++++++|
T Consensus        29 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   91 (118)
T 2vm1_A           29 KLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDG   91 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSBSEEEEEETT
T ss_pred             CEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCcCcEEEEEeCC
Confidence            368999999999999999999999999986   588899999888888888888888888887664

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.70  E-value=5.3e-17  Score=93.91  Aligned_cols=62  Identities=18%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|.||++||++|+++.|.++++++.+++   +.++.+|+++++++++++++.++||++++++
T Consensus        17 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   78 (104)
T 2e0q_A           17 EIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENPDIAARYGVMSLPTVIFFKD   78 (104)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred             CcEEEEEECCCChhHHHHhHHHHHHHHHcCC---ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence            3689999999999999999999999998874   7888888877777777777777777776654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.69  E-value=5.9e-17  Score=99.20  Aligned_cols=62  Identities=21%  Similarity=0.436  Sum_probs=53.3

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++|+||++||++|+.+.|.++++++.+++  ++.++.+|++++.+++++|++.++||++++++|
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G  114 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRG  114 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHCCCCccCEEEEEeCC
Confidence            78999999999999999999999999986  688888888888777777777777777777654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.69  E-value=9.4e-17  Score=99.24  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      .+++|+||++||++|+.+.|.++++.+++++. .+.++.++++..+.+   ++++++. +|.+               ..
T Consensus        25 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~-~~~~---------------~~   87 (151)
T 3raz_A           25 PVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG-SVDMVGIALDTSDNIGNFLKQTPVS-YPIW---------------RY   87 (151)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-TEEEEEEESSCHHHHHHHHHHSCCS-SCEE---------------EE
T ss_pred             CEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCChHHHHHHHHHcCCC-CceE---------------ec
Confidence            47899999999999999999999999999654 599999999866543   3444442 3311               12


Q ss_pred             eccCccchhhhcC--CCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          78 DCTEHGPLCKEYD--IKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        78 ~~~~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.....++.+.|+  +.++|+++++++++++ ...+.|..
T Consensus        88 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i-~~~~~g~~  126 (151)
T 3raz_A           88 TGANSRNFMKTYGNTVGVLPFTVVEAPKCGY-RQTITGEV  126 (151)
T ss_dssp             CCSCHHHHHHTTTCCSCCSSEEEEEETTTTE-EEECCSCC
T ss_pred             CccchHHHHHHhCCccCCCCEEEEECCCCcE-EEEECCCC
Confidence            2345677899999  9999999999655443 24455653

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.69  E-value=1.7e-17  Score=99.95  Aligned_cols=64  Identities=22%  Similarity=0.374  Sum_probs=48.5

Q ss_pred             CeEEEEEEcCCCH--------------HHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCG--------------YCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~--------------~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+||++||+              +|+++.|.++++++.+++  ++.++++|++++++++++|+++++||++++++|
T Consensus        22 k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   99 (123)
T 1oaz_A           22 GAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG   99 (123)
T ss_dssp             SEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCTTTGGGGTCCBSSEEEEEESS
T ss_pred             CeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCccCEEEEEECC
Confidence            3789999999999              999999999999998876  588888888888777777777777777777553

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.68  E-value=5.2e-17  Score=95.59  Aligned_cols=63  Identities=22%  Similarity=0.414  Sum_probs=54.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+++.|.++++++.++   .+.++.+|+++++++++++++.++||++++++|
T Consensus        27 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   89 (113)
T 1ti3_A           27 KLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDG   89 (113)
T ss_dssp             SEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSSTTEEEEEETT
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCcccEEEEEeCC
Confidence            368999999999999999999999999986   588888888888888888888888888777654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.68  E-value=2.4e-17  Score=98.78  Aligned_cols=65  Identities=26%  Similarity=0.474  Sum_probs=52.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|.||++||++|+++.|.++++++.+++. .+.++.+|+++++++++++++.++||++++++|
T Consensus        34 k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G   98 (121)
T 2j23_A           34 KVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNG   98 (121)
T ss_dssp             SCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEEEEEECC
Confidence            36899999999999999999999999888752 278888888777777777777777777766553

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.68  E-value=1.5e-16  Score=97.35  Aligned_cols=88  Identities=14%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHH---HHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVK---AAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      .+++|+||++||++|++++|.+.+   +.+.+++. .+.++.++.+.+.+..    ++++.. +|               
T Consensus        32 k~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~-~~---------------   94 (142)
T 3eur_A           32 EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK-KLKVLSIYPDEELDEWKKHRNDFAKE-WT---------------   94 (142)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT-SEEEEEEECSSCHHHHHHHGGGSCTT-SE---------------
T ss_pred             CEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC-CeEEEEEEcCCCHHHHHHHHHhcccc-cc---------------
Confidence            478999999999999999999999   99999764 5899999988775433    333331 12               


Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                       ...+......+.+.|+|.++||++++++++++
T Consensus        95 -~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i  126 (142)
T 3eur_A           95 -NGYDKELVIKNKNLYDLRAIPTLYLLDKNKTV  126 (142)
T ss_dssp             -EEECTTCHHHHTTCSCCTTCSEEEEECTTCBE
T ss_pred             -cccCccchhhhhhhcCCCcCCeEEEECCCCcE
Confidence             12233333347889999999999999766654

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.68  E-value=9.9e-17  Score=96.46  Aligned_cols=63  Identities=13%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             CeEEEEEEcC-------CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-------CcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSP-------GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-------EHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~-------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+|||+       ||++|+.+.|.++++++.+++  .+.++.+|++       .+..++++++++++||++++++
T Consensus        25 ~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~~~~~  101 (123)
T 1wou_A           25 KTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGT  101 (123)
T ss_dssp             SEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTS
T ss_pred             CEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEEEEECCCchhhhchhHHHHHHCCCCeeCEEEEEcC
Confidence            3789999999       999999999999999999876  6889999884       4444444444444444444443

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.67  E-value=9.6e-17  Score=101.36  Aligned_cols=91  Identities=14%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++++|+|||+||++|+++.+.+   .++.+.+++  .+.++.+|++++.++.....+...            ........
T Consensus        48 k~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~------------~~~~~~~~  113 (172)
T 3f9u_A           48 KPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMEN------------GTERTLRT  113 (172)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEET------------TEEEEEEE
T ss_pred             CeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhc------------chhhhhhh
Confidence            4799999999999999985554   666666655  699999999988765443222110            00000111


Q ss_pred             eccCccch-hhhcCCCCCCEEEEe-cCCcc
Q psy3452          78 DCTEHGPL-CKEYDIKGYPTFQYF-HYFNK  105 (116)
Q Consensus        78 ~~~~~~~~-~~~~~v~~~Pt~~~~-~~g~~  105 (116)
                      ..+.+..+ .++|+|+++||++++ ++|+.
T Consensus       114 ~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~  143 (172)
T 3f9u_A          114 VGDKWSYLQRVKFGANAQPFYVLIDNEGNP  143 (172)
T ss_dssp             HHHHHHHHHHHHHSCCCSSEEEEECTTSCB
T ss_pred             hhhhhhHHHHHHcCCCCcceEEEECCCCCE
Confidence            11122233 588999999999999 45544

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.67  E-value=5.5e-17  Score=102.14  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc-ccceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK-GYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      .+++|+||++||++|+++.|.++++.+++++...+.++.++++...+..+++--+ .+++              +.....
T Consensus        49 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~--------------~~~~~~  114 (165)
T 3s9f_A           49 KTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLS--------------IPFANR  114 (165)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEE--------------CCTTCH
T ss_pred             CEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcc--------------cccCch
Confidence            4789999999999999999999999999986446888888888765433322111 1000              000011


Q ss_pred             cCccchhhhcCCCCCCEEEEecCC-ccc
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYF-NKQ  106 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g-~~~  106 (116)
                      +...++++.|+|.++||+++++++ +++
T Consensus       115 ~~~~~l~~~~~v~~~Pt~~lid~~~G~i  142 (165)
T 3s9f_A          115 NIVEALTKKYSVESIPTLIGLNADTGDT  142 (165)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             hHHHHHHHHcCCCCCCEEEEEeCCCCEE
Confidence            233789999999999999999753 443

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.67  E-value=4.2e-16  Score=93.95  Aligned_cols=91  Identities=13%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.||++||++|+++.|.++++.+.++   ++.++.++++.+.+    ..+++++..+|.                 
T Consensus        26 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------   85 (136)
T 1zzo_A           26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ-----------------   85 (136)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEE-----------------
T ss_pred             CeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEE-----------------
Confidence            368999999999999999999999999987   58889999876543    334555433331                 


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                       -.+.+.++++.|+|.++|+++++++++++.  .+.|.
T Consensus        86 -~~d~~~~~~~~~~i~~~P~~~~id~~g~i~--~~~g~  120 (136)
T 1zzo_A           86 -LADTDGSVWANFGVTQQPAYAFVDPHGNVD--VVRGR  120 (136)
T ss_dssp             -EECTTCHHHHHTTCCSSSEEEEECTTCCEE--EEESC
T ss_pred             -EEcCCcHHHHHcCCCCCceEEEECCCCCEE--EEecC
Confidence             125678899999999999999997655542  45554

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.66  E-value=7.5e-17  Score=98.89  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccccc----CCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKE----YDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+||++||++|+++.|.+.++.+++++...+.++.++++.+.+..++    ++...+|               +  
T Consensus        29 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~---------------~--   91 (144)
T 1i5g_A           29 KTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALP---------------F--   91 (144)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECC---------------T--
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccc---------------c--
Confidence            478999999999999999999999999998533688999988865433332    2211111               0  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEec-CCcc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFH-YFNK  105 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~  105 (116)
                      ...+.+.+++++|+|.++||+++++ ++++
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~~G~  121 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGN  121 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCC
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEECCCCc
Confidence            0113457899999999999999997 4444

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.66  E-value=8.6e-17  Score=98.90  Aligned_cols=88  Identities=11%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC----CccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY----DIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++||++|+++.|.+.++.+++++..++.++.++++.+.+..+++    +...+|               +  
T Consensus        29 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~---------------~--   91 (146)
T 1o8x_A           29 KLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVP---------------F--   91 (146)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECC---------------G--
T ss_pred             CEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeec---------------c--
Confidence            4789999999999999999999999999984336888888888654333222    211111               0  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEec-CCcc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFH-YFNK  105 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~  105 (116)
                      ...+.+.+++++|+|.++||+++++ ++++
T Consensus        92 ~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~  121 (146)
T 1o8x_A           92 AQSEAVQKLSKHFNVESIPTLIGVDADSGD  121 (146)
T ss_dssp             GGHHHHHHHHHHTTCCSSSEEEEEETTTCC
T ss_pred             chhhHHHHHHHHhCCCCCCEEEEEECCCCe
Confidence            0113457899999999999999997 4443

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.65  E-value=1e-16  Score=107.03  Aligned_cols=61  Identities=13%  Similarity=0.145  Sum_probs=56.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|+|+|||+||++|+.+.|.|.++++.++   .+.|+++|++. ..++++|++.++||+++|++|
T Consensus       135 ~VvV~Fya~wC~~Ck~l~p~l~~La~~~~---~v~f~kVd~d~-~~l~~~~~I~~~PTll~~~~G  195 (245)
T 1a0r_P          135 TIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKASN-TGAGDRFSSDVLPTLLVYKGG  195 (245)
T ss_dssp             EEEEEEECTTSTTHHHHHHHHHHHHHHCT---TSEEEEEEHHH-HCCTTSSCTTTCSEEEEEETT
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHHHHCC---CCEEEEEeCCc-HHHHHHCCCCCCCEEEEEECC
Confidence            78999999999999999999999999987   48999999987 678899999999999999875

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.65  E-value=6e-16  Score=96.43  Aligned_cols=86  Identities=14%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc------cc---cccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG------PL---CKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~------~~---~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      .+++|+||++||++|+.+.|.++++.++++.. .+.++.++.+...      .+   .+.+++..               
T Consensus        39 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~---------------  102 (164)
T 2h30_A           39 KPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLNYPK---------------  102 (164)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCCTT---------------
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCCCCc---------------
Confidence            36899999999999999999999999998765 4788888765321      11   11222221               


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                         ..++.+.+.+++++|+|.++||+++++++++
T Consensus       103 ---~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~  133 (164)
T 2h30_A          103 ---LPVVTDNGGTIAQNLNISVYPSWALIGKDGD  133 (164)
T ss_dssp             ---SCEEECTTCHHHHHTTCCSSSEEEEECTTSC
T ss_pred             ---ceEEEcCchHHHHHcCCCccceEEEECCCCc
Confidence               2345577889999999999999999954444

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.65  E-value=1.6e-16  Score=104.67  Aligned_cols=65  Identities=40%  Similarity=0.727  Sum_probs=60.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+++.|.++++++.+.+.. .+.++.+|++++++++++|+|+++||+++|++|
T Consensus       149 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g  214 (241)
T 3idv_A          149 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG  214 (241)
T ss_dssp             EEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             eEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECC
Confidence            68999999999999999999999999997642 599999999999999999999999999999875

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.65  E-value=4.6e-16  Score=112.57  Aligned_cols=77  Identities=29%  Similarity=0.492  Sum_probs=57.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhc-cCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      .+++|+|||+||++|+++.|.++++++.++ +...+.+++                                     +|+
T Consensus       377 k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~-------------------------------------vd~  419 (504)
T 2b5e_A          377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK-------------------------------------LDH  419 (504)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEE-------------------------------------EEG
T ss_pred             CCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEE-------------------------------------ecC
Confidence            368999999999999999999999999986 322344444                                     444


Q ss_pred             cCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.+... + |+|+++||+++|++|++.....|.|..+
T Consensus       420 ~~~~~~-~-~~v~~~Pt~~~~~~G~~~~~~~~~G~~~  454 (504)
T 2b5e_A          420 TENDVR-G-VVIEGYPTIVLYPGGKKSESVVYQGSRS  454 (504)
T ss_dssp             GGCCCS-S-CCCSSSSEEEEECCTTSCCCCBCCSCCC
T ss_pred             Cccccc-c-CCceecCeEEEEeCCceecceEecCCCC
Confidence            433333 3 8888999999998876655677888653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.64  E-value=2e-16  Score=103.62  Aligned_cols=64  Identities=19%  Similarity=0.243  Sum_probs=58.3

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccC--cceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDN--HKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++|+||++||++|+++.|.++++++.+++.  +.+.++.+|++++++++++|+++++||++++++|
T Consensus       137 ~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G  202 (226)
T 1a8l_A          137 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG  202 (226)
T ss_dssp             EEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT
T ss_pred             EEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCC
Confidence            499999999999999999999999999721  2699999999999999999999999999998875

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.64  E-value=1.5e-16  Score=97.39  Aligned_cols=88  Identities=15%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC----CccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY----DIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+||++||++|+++.|.+.++.+++++...+.++.++++.+.+..+++    +...+|                 .
T Consensus        29 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~-----------------~   91 (144)
T 1o73_A           29 KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALP-----------------F   91 (144)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECC-----------------T
T ss_pred             CEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEee-----------------c
Confidence            4789999999999999999999999999984336888888888764332222    111111                 0


Q ss_pred             EeccCccchhhhcCCCCCCEEEEec-CCcc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFH-YFNK  105 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~  105 (116)
                      ...+.+.+++++|+|.++||+++++ ++++
T Consensus        92 ~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~  121 (144)
T 1o73_A           92 DQRSTVSELGKTFGVESIPTLITINADTGA  121 (144)
T ss_dssp             TCHHHHHHHHHHHTCCSSSEEEEEETTTCC
T ss_pred             cchhHHHHHHHHcCCCCCCEEEEEECCCCe
Confidence            0113466899999999999999998 4444

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.64  E-value=4.3e-16  Score=94.10  Aligned_cols=88  Identities=15%  Similarity=0.333  Sum_probs=67.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++||++|+++.|.++++.+.++   .+.++.++++.+.+..    +++++ .+|                  
T Consensus        25 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~-~~~------------------   82 (136)
T 1lu4_A           25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNL-NFT------------------   82 (136)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTC-CSE------------------
T ss_pred             CEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCC-Cce------------------
Confidence            368999999999999999999999999987   5889999988754333    33333 112                  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCC
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYH  112 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~  112 (116)
                      +-.+.+.+++++|++.++|+++++++++++.  .+.
T Consensus        83 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~--~~~  116 (136)
T 1lu4_A           83 NLNDADGVIWARYNVPWQPAFVFYRADGTST--FVN  116 (136)
T ss_dssp             EEECTTSHHHHHTTCCSSSEEEEECTTSCEE--EEC
T ss_pred             EEECCchhHHHhcCCCCCCEEEEECCCCcEE--EEE
Confidence            1125678899999999999999996555543  444

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.64  E-value=7.7e-16  Score=95.52  Aligned_cols=88  Identities=10%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      ++++|+||++||++|+...|.+.++.+++++. .+.++.++++...+.++++.. .+|               +..+ .+
T Consensus        36 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~-~~~---------------~~~~-~d   97 (152)
T 2lrt_A           36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSAD-NLP---------------WVCV-RD   97 (152)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHT-TCS---------------SEEE-EC
T ss_pred             CEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHh-CCC---------------ceEE-EC
Confidence            47899999999999999999999999999875 489999999887765555432 222               1111 13


Q ss_pred             Ccc---chhhhcCCCCCCEEEEecCCccc
Q psy3452          81 EHG---PLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        81 ~~~---~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+.   .+.+.|++.++|+++++++++++
T Consensus        98 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i  126 (152)
T 2lrt_A           98 ANGAYSSYISLYNVTNLPSVFLVNRNNEL  126 (152)
T ss_dssp             SSGGGCHHHHHHTCCSCSEEEEEETTTEE
T ss_pred             CCCcchHHHHHcCcccCceEEEECCCCeE
Confidence            333   48999999999999999654443

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.64  E-value=7e-16  Score=107.36  Aligned_cols=63  Identities=27%  Similarity=0.562  Sum_probs=57.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+++|+|||+||++|+++.|.|+++++.+++...+.++.+|++.+.  +++++|+++||+++++.
T Consensus       268 k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~  330 (361)
T 3uem_A          268 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPA  330 (361)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECS
T ss_pred             CcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEEC
Confidence            3689999999999999999999999999987656999999999887  78999999999999954

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.64  E-value=1.7e-16  Score=104.30  Aligned_cols=61  Identities=13%  Similarity=0.116  Sum_probs=55.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|+|+||++||++|+.+.|.++++++.++   .+.++++|++ ++.++++|++.++||+++|++|
T Consensus       122 ~vvV~F~a~wC~~C~~l~p~l~~la~~~~---~v~f~~vd~~-~~~l~~~~~i~~~PTl~~~~~G  182 (217)
T 2trc_P          122 TIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRAS-NTGAGDRFSSDVLPTLLVYKGG  182 (217)
T ss_dssp             EEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHH-HHTCSTTSCGGGCSEEEEEETT
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEEECC-cHHHHHHCCCCCCCEEEEEECC
Confidence            79999999999999999999999999985   5899999988 7778888999999999888775

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.64  E-value=1.3e-15  Score=94.53  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             CeEEEEEEcCCCHHHHhh-hHHHHHHHHHhccCcceEEEEEeCCC------c----ccccccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGYCKKA-KPEYVKAAEVLKDNHKVALAAIDCTE------H----GPLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~~vd~~~------~----~~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+||++||++|+++ .|.+.++.+++++. .+.++.++++.      .    ...++++++. +|.+         
T Consensus        29 k~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------   97 (158)
T 3eyt_A           29 KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED-KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIK-FPVG---------   97 (158)
T ss_dssp             SEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCC-SCEE---------
T ss_pred             CEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC-CEEEEEEEecccccccCCHHHHHHHHHHcCCC-ceEE---------
Confidence            479999999999999996 99999999999865 58888888741      2    2344555554 3311         


Q ss_pred             ceeeEEEEeccCc---cchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEH---GPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                             .+....   ..+++.|+|.++|+++++++++++
T Consensus        98 -------~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i  130 (158)
T 3eyt_A           98 -------VDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDL  130 (158)
T ss_dssp             -------EECCCSSSSCHHHHHTTCCSSSEEEEECTTSEE
T ss_pred             -------EcCccchhhHHHHHHcCCCCCCEEEEECCCCCE
Confidence                   222221   168999999999999999655443

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.63  E-value=1.6e-15  Score=92.40  Aligned_cols=86  Identities=22%  Similarity=0.362  Sum_probs=65.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC---cc----cccccCCccccceEEEcCceeeeceee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE---HG----PLCKEYDIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      ++++|.||++||++|+.+.|.+.++.+.+++. .+.++.++++.   ..    ...+++++. +|               
T Consensus        35 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~-~~---------------   97 (145)
T 3erw_A           35 QKTILHFWTSWCPPCKKELPQFQSFYDAHPSD-SVKLVTVNLVNSEQNQQVVEDFIKANKLT-FP---------------   97 (145)
T ss_dssp             SEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS-SEEEEEEECGGGSSCHHHHHHHHHHTTCC-SC---------------
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC-CEEEEEEEccCCcCCHHHHHHHHHHcCCc-ee---------------
Confidence            47899999999999999999999999999854 58888888875   22    233344432 22               


Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                         +-.+.+..+++.|+|.++|+++++++++++
T Consensus        98 ---~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  127 (145)
T 3erw_A           98 ---IVLDSKGELMKEYHIITIPTSFLLNEKGEI  127 (145)
T ss_dssp             ---EEECSSSHHHHHTTCCEESEEEEECTTCCE
T ss_pred             ---EEEcCchhHHHhcCcCccCeEEEEcCCCcE
Confidence               122567889999999999999999554443

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.63  E-value=7.4e-16  Score=94.95  Aligned_cols=87  Identities=17%  Similarity=0.366  Sum_probs=66.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.||++||++|+++.|.+.++.+.+++. .+.++.++++.+.+.    .+++++..                  ..
T Consensus        31 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~------------------~~   91 (152)
T 2lja_A           31 KYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWENMVTKDQLKG------------------IQ   91 (152)
T ss_dssp             SEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS-SEEEEEEECCSCHHHHHHHHHHHTCCS------------------EE
T ss_pred             CEEEEEEECCcCHhHHHHhHHHHHHHHHhccC-CeEEEEEEccCcHHHHHHHHHhcCCCC------------------ce
Confidence            47899999999999999999999999999764 489999998876532    23333322                  22


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.++++.|+|.++|+++++++++++
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  121 (152)
T 2lja_A           92 LHMGTDRTFMDAYLINGIPRFILLDRDGKI  121 (152)
T ss_dssp             EECSSCTHHHHHTTCCSSCCEEEECTTSCE
T ss_pred             eecCcchhHHHHcCcCCCCEEEEECCCCeE
Confidence            334567789999999999999999744443

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.63  E-value=3e-16  Score=92.84  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=50.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCcc-ccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIK-GYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~-~~Pt~~~~~~~   66 (116)
                      .+++|+|+|+|||+|+.+.|.++++++.  +  .+.+..+|+++++.    ++++++|+ ..||+++|++|
T Consensus        25 ~~vvi~khatwCgpc~~~~~~~e~~~~~--~--~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G   91 (112)
T 3iv4_A           25 KYVFVLKHSETCPISANAYDQFNKFLYE--R--DMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNG   91 (112)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHH--H--TCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETT
T ss_pred             CCEEEEEECCcCHhHHHHHHHHHHHhcc--C--CceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECC
Confidence            3799999999999999999999999884  3  68888888888865    57777777 47777777764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.63  E-value=6.6e-16  Score=95.48  Aligned_cols=88  Identities=17%  Similarity=0.327  Sum_probs=64.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.||++||++|+++.|.+.++.+.+++. .+.++.++++...+..    +++++. +|.               . 
T Consensus        30 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~-~~~---------------~-   91 (152)
T 2lrn_A           30 KYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK-GFTIYGVSTDRREEDWKKAIEEDKSY-WNQ---------------V-   91 (152)
T ss_dssp             SEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT-TEEEEEEECCSCHHHHHHHHHHHTCC-SEE---------------E-
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHHHhCCC-CeE---------------E-
Confidence            47899999999999999999999999999875 4889999888654322    233322 221               1 


Q ss_pred             Eecc-CccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCT-EHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+.. .+.++++.|+|.++||++++++++++
T Consensus        92 ~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i  122 (152)
T 2lrn_A           92 LLQKDDVKDVLESYCIVGFPHIILVDPEGKI  122 (152)
T ss_dssp             EECHHHHHHHHHHTTCCSSCEEEEECTTSEE
T ss_pred             ecccchhHHHHHHhCCCcCCeEEEECCCCeE
Confidence            1111 15789999999999999999554444

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.63  E-value=7.5e-16  Score=85.05  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      ..|+||++||++|+++.|.++++++.+++  .+.+..+|   +.++++++++.++||+++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~~v~---~~~~~~~~~v~~~Pt~~~   56 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK---EMDQILEAGLTALPGLAV   56 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC---SHHHHHHHTCSSSSCEEE
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC--ceEEEEec---CHHHHHHCCCCcCCEEEE
Confidence            46899999999999999999999999876  57777776   556666777777777766

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.63  E-value=3.2e-15  Score=89.96  Aligned_cols=86  Identities=20%  Similarity=0.332  Sum_probs=63.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-----cc----cccccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-----HG----PLCKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----~~----~~~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      ++++|.||++||++|+.+.|.++++.+.+++  .+.++.++...     ..    ...++++...+|             
T Consensus        23 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------   87 (138)
T 4evm_A           23 KKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLP-------------   87 (138)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCC-------------
T ss_pred             CEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCee-------------
Confidence            4789999999999999999999999998665  68888885432     11    223344443333             


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                           +..+.+.+++++|++.++|+++++++++++
T Consensus        88 -----~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  117 (138)
T 4evm_A           88 -----VLVDPSGKLLETYGVRSYPTQAFIDKEGKL  117 (138)
T ss_dssp             -----EEECTTCHHHHHTTCCSSSEEEEECTTCCE
T ss_pred             -----EEECcchHHHHHcCcccCCeEEEECCCCcE
Confidence                 223567789999999999999999554443

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.62  E-value=3.7e-15  Score=92.72  Aligned_cols=86  Identities=10%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-ccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-GPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      .+++|.||++||++|+.+.|.+.++.+++++. .+.++.++.+.. .+..+++++. +|                  +-.
T Consensus        42 k~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~-~~------------------~~~  101 (158)
T 3hdc_A           42 KIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEKRFPEKYRRAPVS-FN------------------FLS  101 (158)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT-SEEEEEEECSSSCCGGGGGCCCS-CE------------------EEE
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHcccC-CeEEEEEeCCHHHHHHHHHcCCC-ce------------------EEE
Confidence            47899999999999999999999999999854 588999988763 3344444432 11                  223


Q ss_pred             cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+.++.+.|+|.++|+++++++++++
T Consensus       102 d~~~~~~~~~~v~~~P~~~lid~~G~i  128 (158)
T 3hdc_A          102 DATGQVQQRYGANRLPDTFIVDRKGII  128 (158)
T ss_dssp             CTTSHHHHHTTCCSSSEEEEECTTSBE
T ss_pred             CchHHHHHHhCCCCcceEEEEcCCCCE
Confidence            567889999999999999999655543

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.62  E-value=1.3e-16  Score=95.31  Aligned_cols=65  Identities=18%  Similarity=0.314  Sum_probs=45.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc--ccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH--GPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++|+|||+||++|+.+.+.+....+.......+.+.++|++.+  ++++.+++|.++||++||++|
T Consensus        20 ~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G   86 (116)
T 3dml_A           20 LRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGD   86 (116)
T ss_dssp             EEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETT
T ss_pred             CEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECC
Confidence            57999999999999999875543322110000367778887775  467778888888888888765

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.62  E-value=1.4e-16  Score=93.91  Aligned_cols=53  Identities=21%  Similarity=0.435  Sum_probs=40.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC------CcccccccCCccccceEEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT------EHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~------~~~~~~~~~~v~~~Pt~~~   62 (116)
                      +++|+|||+||++|+++.|.++++++.++        .+|++      ++.+++++|+|+++||+++
T Consensus        14 ~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i   72 (106)
T 3kp8_A           14 IGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII   72 (106)
T ss_dssp             HTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEecccccchhHHHHHHcCCeEeCEEEE
Confidence            35789999999999999999999886653        34444      4556666777777777665

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.62  E-value=1.5e-15  Score=92.95  Aligned_cols=89  Identities=16%  Similarity=0.303  Sum_probs=66.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++||++|+.+.|.+.++.+.+++. .+.++.++++.+.+    ..+++++..+|.                .
T Consensus        32 k~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~----------------~   94 (148)
T 3hcz_A           32 KYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLN----------------V   94 (148)
T ss_dssp             SEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEE----------------E
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceE----------------E
Confidence            47899999999999999999999999999874 49999999886654    333444443331                1


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+......+++.|+|.++|+++++++++++
T Consensus        95 ~d~~~~~~~~~~~~i~~~P~~~lid~~G~i  124 (148)
T 3hcz_A           95 RDSKNHTDFKITYDIYATPVLYVLDKNKVI  124 (148)
T ss_dssp             ECTTCCCCHHHHHCCCSSCEEEEECTTCBE
T ss_pred             eccccchhHHHhcCcCCCCEEEEECCCCcE
Confidence            233333449999999999999999555443

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.62  E-value=9.9e-16  Score=95.10  Aligned_cols=86  Identities=15%  Similarity=0.305  Sum_probs=63.3

Q ss_pred             CeEEEEEEcCCCHHHHh-hhHHHHHHHHHhccCcceEEEEEeCC------Cc----ccccccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGYCKK-AKPEYVKAAEVLKDNHKVALAAIDCT------EH----GPLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~-~~~~~~~~~~~~~~~~~~~~~~vd~~------~~----~~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+||++||++|++ +.|.+.++.+++++. .+.++.++++      ..    ...++++++. +|.+         
T Consensus        31 k~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------   99 (160)
T 3lor_A           31 KVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIK-FPVA---------   99 (160)
T ss_dssp             SEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCC-SCEE---------
T ss_pred             CEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEEeccccccccCCHHHHHHHHHHcCCC-CcEE---------
Confidence            47999999999999999 599999999999875 4888888873      22    2334455543 3311         


Q ss_pred             ceeeEEEEeccCccc------hhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGP------LCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~------~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                             .  +....      +.++|+|.++|+++++++++++
T Consensus       100 -------~--d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i  133 (160)
T 3lor_A          100 -------V--DMPREGQRIPSTMKKYRLEGTPSIILADRKGRI  133 (160)
T ss_dssp             -------E--ECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBE
T ss_pred             -------E--CCccccchhhhHHHhcccCccceEEEECCCCcE
Confidence                   1  22333      8999999999999999655443

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.61  E-value=7.4e-16  Score=94.28  Aligned_cols=87  Identities=17%  Similarity=0.220  Sum_probs=65.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHh-ccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++|.||++||++|+.+.|.+.++.+.+ ++. .+.++.++++...+    ..+++++. +|                 
T Consensus        34 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~-~~-----------------   94 (148)
T 3fkf_A           34 RYLLLNFWASWCDPQPEANAELKRLNKEYKKNK-NFAMLGISLDIDREAWETAIKKDTLS-WD-----------------   94 (148)
T ss_dssp             SEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT-TEEEEEEECCSCHHHHHHHHHHTTCC-SE-----------------
T ss_pred             cEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC-CeEEEEEECCCCHHHHHHHHHHcCCC-ce-----------------
Confidence            47899999999999999999999999999 653 48999998887653    23344432 12                 


Q ss_pred             EE-ec-cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          76 AI-DC-TEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v-~~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+ +. ..+..+++.|+|+++|+++++++++++
T Consensus        95 ~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i  127 (148)
T 3fkf_A           95 QVCDFTGLSSETAKQYAILTLPTNILLSPTGKI  127 (148)
T ss_dssp             EECCSCGGGCHHHHHTTCCSSSEEEEECTTSBE
T ss_pred             EEEccCCcchHHHHhcCCCCcCEEEEECCCCeE
Confidence            11 11 126789999999999999999555443

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.41  E-value=3.8e-17  Score=94.80  Aligned_cols=63  Identities=22%  Similarity=0.402  Sum_probs=52.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|.||++||++|+++.|.++++++.+++  ++.++.+|++++.++++++++.++||++++++|
T Consensus        21 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (106)
T 2yj7_A           21 PVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNG   83 (106)
Confidence            689999999999999999999999998876  578888888777777777777777777766543

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.61  E-value=1.6e-15  Score=92.84  Aligned_cols=89  Identities=12%  Similarity=0.120  Sum_probs=66.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+||++||++|+++.|.+.++.+++++. .+.++.++.+.+.+    ..+++++...|.+                
T Consensus        33 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~----------------   95 (143)
T 4fo5_A           33 RYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQF----------------   95 (143)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEE----------------
T ss_pred             CEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceee----------------
Confidence            47899999999999999999999999999865 58899998886643    3334444321211                


Q ss_pred             Eec-cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDC-TEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+. ....++.+.|+|.+.|+++++++.+++
T Consensus        96 ~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i  126 (143)
T 4fo5_A           96 HEGLGKESELYKKYDLRKGFKNFLINDEGVI  126 (143)
T ss_dssp             ECTTGGGSHHHHHTTGGGCCCEEEECTTSBE
T ss_pred             ecccccchHHHHHcCCCCCCcEEEECCCCEE
Confidence            121 134678999999999999999755554

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.61  E-value=5.5e-15  Score=90.25  Aligned_cols=84  Identities=21%  Similarity=0.342  Sum_probs=64.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---------cccccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---------PLCKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---------~~~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      .+++|.||++||++|+++.|.+.++.+.+++  .+.++.++++...         ...+++++. +|             
T Consensus        30 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------   93 (148)
T 2b5x_A           30 KPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDIT-QP-------------   93 (148)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCC-SC-------------
T ss_pred             CEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEEcCCCccccCHHHHHHHHHHcCCC-cc-------------
Confidence            3689999999999999999999999999987  4889999877521         233444442 22             


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                           +-.+.+.++++.|+|.++||+++++++++
T Consensus        94 -----~~~d~~~~~~~~~~v~~~P~~~lid~~G~  122 (148)
T 2b5x_A           94 -----IFVDSDHALTDAFENEYVPAYYVFDKTGQ  122 (148)
T ss_dssp             -----EEECSSCHHHHHTCCCCSSEEEEECTTCB
T ss_pred             -----eEECCchhHHHHhCCCCCCEEEEECCCCc
Confidence                 12356788999999999999999954444

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.61  E-value=1.4e-15  Score=92.74  Aligned_cols=86  Identities=19%  Similarity=0.363  Sum_probs=63.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHH---HHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVK---AAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      .+++|+||++||++|+++.|.+.+   +.+.+++. .+.++.++.+.+.+..    +++++. +|               
T Consensus        28 k~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~-~~---------------   90 (142)
T 3ewl_A           28 QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG-TLRVLAIYPDENREEWATKAVYMPQG-WI---------------   90 (142)
T ss_dssp             SEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT-SEEEEEEECSSCHHHHHHHHTTSCTT-CE---------------
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC-CeEEEEEEecCCHHHHHHHHHHcCCC-cc---------------
Confidence            478999999999999999999988   88888764 4889999888665433    343331 22               


Q ss_pred             EEEEeccCccchhh--hcCCCCCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCK--EYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~--~~~v~~~Pt~~~~~~g~~~  106 (116)
                         +-.+.+..+..  .|+|.++|+++++++++++
T Consensus        91 ---~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i  122 (142)
T 3ewl_A           91 ---VGWNKAGDIRTRQLYDIRATPTIYLLDGRKRV  122 (142)
T ss_dssp             ---EEECTTCHHHHTTCSCCCSSSEEEEECTTCBE
T ss_pred             ---eeeCCccchhhHHHcCCCCCCeEEEECCCCCE
Confidence               11244455544  8999999999999655553

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.60  E-value=1e-15  Score=90.23  Aligned_cols=61  Identities=13%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |..++.||++||++|+.+.|.++++++++    .+.+..+|++++++++++|+++ +|+++++.+|
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~----~i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG   89 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKS----WFELEVINIDGNEHLTRLYNDR-VPVLFAVNED   89 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHS----CCCCEEEETTTCHHHHHHSTTS-CSEEEETTTT
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHhCCC-CceEEEEECC
Confidence            56789999999999999999999998887    3788889999888888888886 8888877654

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.60  E-value=2.2e-16  Score=97.52  Aligned_cols=62  Identities=10%  Similarity=0.083  Sum_probs=47.0

Q ss_pred             eEEEEEEcCC--CHHHHhhhHHHHHHHHHhccCcceE--EEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPG--CGYCKKAKPEYVKAAEVLKDNHKVA--LAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~w--C~~C~~~~~~~~~~~~~~~~~~~~~--~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .++|+||++|  |++|+.+.|.++++++++ +  ++.  ++++|++++++++++|+|+++||+++|++|
T Consensus        36 ~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~--~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G  101 (142)
T 2es7_A           36 DGVILLSSDPRRTPEVSDNPVMIAELLREF-P--QFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDG  101 (142)
T ss_dssp             SEEEEECCCSCC----CCHHHHHHHHHHTC-T--TSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHHHHh-c--ccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCC
Confidence            3678899887  999999999999999998 5  566  888888877777777777777777777664

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=8.2e-16  Score=92.72  Aligned_cols=61  Identities=20%  Similarity=0.369  Sum_probs=46.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCC--cccccccCCccccceEEEc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIKGYPTFHHL   63 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   63 (116)
                      .+++|+||++||++|+++.|.+   +++.+.++.  .+.++.+|++.  +..+++++++.++||++++
T Consensus        28 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   93 (130)
T 2kuc_A           28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR--HFVNLKMDMEKGEGVELRKKYGVHAYPTLLFI   93 (130)
T ss_dssp             SCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH--HSEEEEECSSSTTHHHHHHHTTCCSSCEEEEE
T ss_pred             CeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc--CeEEEEEecCCcchHHHHHHcCCCCCCEEEEE
Confidence            3689999999999999999999   777776655  67777777763  4556666666666666666

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.59  E-value=8e-16  Score=97.83  Aligned_cols=62  Identities=15%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHH-H--HHHHHHhccCcceEEEEEeCCCcccccccC--------CccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPE-Y--VKAAEVLKDNHKVALAAIDCTEHGPLCKEY--------DIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~   64 (116)
                      ++|+|+|||+||++|+.+.|. +  .++++.+++  ++.++++|.++.+++++.|        ++.++||++|++
T Consensus        40 KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~--~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~  112 (173)
T 3ira_A           40 KPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE--AFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMT  112 (173)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH--HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEEC
T ss_pred             CCEEEecccchhHhhccccccccCCHHHHHHHHh--cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeEC
Confidence            479999999999999999984 2  567777766  6899999999888777666        555555555554

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.59  E-value=1.5e-15  Score=93.68  Aligned_cols=85  Identities=21%  Similarity=0.335  Sum_probs=64.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++||++|+++.|.+.++.+.+++. .+.++.++++..++    ..+++++. +|                  
T Consensus        27 k~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~-~~------------------   86 (151)
T 2f9s_A           27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVN-FP------------------   86 (151)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHHTCC-SC------------------
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCC-ce------------------
Confidence            47899999999999999999999999999764 48888888876543    23344432 22                  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      +-.+.+.++++.|+|.++|++++++++++
T Consensus        87 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~  115 (151)
T 2f9s_A           87 VVLDTDRQVLDAYDVSPLPTTFLINPEGK  115 (151)
T ss_dssp             EEEETTSHHHHHTTCCSSCEEEEECTTSE
T ss_pred             EEECCchHHHHhcCCCCCCeEEEECCCCc
Confidence            11245678999999999999999954444

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.59  E-value=2.1e-15  Score=93.93  Aligned_cols=77  Identities=13%  Similarity=0.256  Sum_probs=57.7

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+|| ++||++|+++.|.+   .++.+.++.  .+.++.+|++....+.       .|                  
T Consensus        48 k~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~--~~~~v~vd~~~~~~~~-------~~------------------  100 (154)
T 2ju5_A           48 KPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--HLHMVEVDFPQKNHQP-------EE------------------  100 (154)
T ss_dssp             CCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEECCSSCCCC-------HH------------------
T ss_pred             CeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC--cEEEEEecCccccCCC-------hh------------------
Confidence            37899999 99999999999999   777666644  7899999988765210       00                  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEe-cCCcc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYF-HYFNK  105 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~  105 (116)
                       ..+.+.+++++|+|.++||++++ ++|+.
T Consensus       101 -~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~  129 (154)
T 2ju5_A          101 -QRQKNQELKAQYKVTGFPELVFIDAEGKQ  129 (154)
T ss_dssp             -HHHHHHHHHHHTTCCSSSEEEEECTTCCE
T ss_pred             -hHhhHHHHHHHcCCCCCCEEEEEcCCCCE
Confidence             01345678888899999998888 44443

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.38  E-value=8.7e-17  Score=97.11  Aligned_cols=62  Identities=24%  Similarity=0.497  Sum_probs=52.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCC--CcccccccCCccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      .+++|+||++||++|+++.|.+   +++.+.+++  ++.++.+|++  ++..+++++++.++||+++++
T Consensus        20 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d   86 (130)
T 2lst_A           20 RMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA--RFVVASVSVDTPEGQELARRYRVPGTPTFVFLV   86 (130)
Confidence            3689999999999999999999   888888776  6888888884  557788888888888888883

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.59  E-value=5e-16  Score=97.81  Aligned_cols=52  Identities=13%  Similarity=0.360  Sum_probs=36.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-ccccCCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-LCKEYDI   54 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v   54 (116)
                      .+++|+|||+||++|+.+.|.++++.+.++.  .+.++.+|++.++. ++.++++
T Consensus        47 k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~   99 (164)
T 1sen_A           47 LPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEEPKDEDFSP   99 (164)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGSCSCGGGCT
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCchHHHHHhcc
Confidence            4789999999999999999999997766544  34555555554443 3344333

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.59  E-value=8.6e-17  Score=96.89  Aligned_cols=61  Identities=21%  Similarity=0.427  Sum_probs=46.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++|+||++||++|+++.|.++++++.++   .+.++.+|++++.++++++++.++||++++++
T Consensus        38 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   98 (130)
T 1wmj_A           38 VVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEAMPTFLFIKD   98 (130)
T ss_dssp             BCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCSSCCCCBCTT
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCccceEEEEeC
Confidence            68999999999999999999999999886   46677777666666666666666665555544

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.59  E-value=1e-14  Score=92.81  Aligned_cols=87  Identities=15%  Similarity=0.217  Sum_probs=68.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-----ccccccCCccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-----GPLCKEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++|+||++||++|+.+.|.++++.+.+++. .+.++.++.+..     ..+.+++++..+|.+               
T Consensus        61 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~---------------  124 (186)
T 1jfu_A           61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFLKEANLTRLGYF---------------  124 (186)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHHHHTTCCTTCCE---------------
T ss_pred             CEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC-CcEEEEEECCCCCHHHHHHHHHHcCCCCCceE---------------
Confidence            37899999999999999999999999999854 588888888765     355677777665522               


Q ss_pred             EEeccCccchhhhcCCC----CCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIK----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~----~~Pt~~~~~~g~~~  106 (116)
                         .+.+..+.+.|++.    ++|+++++++++++
T Consensus       125 ---~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i  156 (186)
T 1jfu_A          125 ---NDQKAKVFQDLKAIGRALGMPTSVLVDPQGCE  156 (186)
T ss_dssp             ---ECTTCHHHHHHHTTTCCSSSSEEEEECTTSBE
T ss_pred             ---ECCcchHHHHhccccccCCCCEEEEECCCCCE
Confidence               14557788888885    89999999655444

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.58  E-value=6.4e-15  Score=90.69  Aligned_cols=85  Identities=16%  Similarity=0.280  Sum_probs=65.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++||++|+.+.|.+.++.+.+++. .+.++.++++.+.+..    +++++. +|                  
T Consensus        29 k~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~-~~------------------   88 (152)
T 3gl3_A           29 SVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAE-FT------------------   88 (152)
T ss_dssp             SEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCC-SE------------------
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCC-Cc------------------
Confidence            47899999999999999999999999999874 3888999888665332    333331 11                  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      +-.+.+.++++.|++.++|++++++++++
T Consensus        89 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~  117 (152)
T 3gl3_A           89 VAFDPKGQTPRLYGVKGMPTSFLIDRNGK  117 (152)
T ss_dssp             EEECTTCHHHHHTTCCSSSEEEEECTTSB
T ss_pred             eeECCcchhHHHcCCCCCCeEEEECCCCC
Confidence            22356778999999999999999955444

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.58  E-value=4.9e-15  Score=98.66  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=56.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhc--cCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLK--DNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++++.|||+||++|+++.|.+++++..++  +..++.+..+|++.+++++++|+|+++||+++ ++.
T Consensus       140 ~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i-~G~  205 (243)
T 2hls_A          140 VHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI-NGY  205 (243)
T ss_dssp             EEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE-TTE
T ss_pred             cEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE-CCE
Confidence            56889999999999999999999999983  11269999999999999999999999999988 553

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.58  E-value=3.2e-15  Score=92.14  Aligned_cols=93  Identities=17%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-----cccccCCccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-----PLCKEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      .+++|.||++||++|+++.|.+.++.+.+++. .+.++.++.+.+.     ..++++++..                   
T Consensus        29 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~-------------------   88 (153)
T 2l5o_A           29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIESVRQYVKDYGLPF-------------------   88 (153)
T ss_dssp             CEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT-TEEEEEEECTTSCHHHHHHHHHHTTCCS-------------------
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CeEEEEEecCCCCHHHHHHHHHHcCCCc-------------------
Confidence            47899999999999999999999999999875 4788888765332     2334444321                   


Q ss_pred             EEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          76 AIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .+..+.+..+++.|+|.++|+++++++++++. ..|.|.
T Consensus        89 ~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~g~  126 (153)
T 2l5o_A           89 TVMYDADKAVGQAFGTQVYPTSVLIGKKGEIL-KTYVGE  126 (153)
T ss_dssp             EEEECSSCHHHHHHTCCSSSEEEEECSSSCCC-EEEESS
T ss_pred             eEEcCchHHHHHHcCCCccCeEEEECCCCcEE-EEEcCC
Confidence            23345678899999999999999996554432 334443

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.57  E-value=1.3e-15  Score=94.09  Aligned_cols=83  Identities=12%  Similarity=0.211  Sum_probs=61.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++||++|+++.|.++++.+.  +  ++.++.++.+.+.+..    +++++.                  +..
T Consensus        43 k~~ll~f~~~~C~~C~~~~~~l~~l~~~--~--~v~~v~v~~~~~~~~~~~~~~~~~~~------------------~~~  100 (156)
T 1kng_A           43 KVSLVNVWASWCVPCHDEAPLLTELGKD--K--RFQLVGINYKDAADNARRFLGRYGNP------------------FGR  100 (156)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHTTC--T--TSEEEEEEESCCHHHHHHHHHHHCCC------------------CSE
T ss_pred             CEEEEEEEcccCHhHHHHHHHHHHHHhc--C--CeEEEEEECCCCHHHHHHHHHHcCCC------------------Cce
Confidence            3689999999999999999999998776  2  6888888887654333    333321                  122


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      +..+.+..+++.|++.++|++++++.+++
T Consensus       101 ~~~d~~~~~~~~~~v~~~P~~~~id~~G~  129 (156)
T 1kng_A          101 VGVDANGRASIEWGVYGVPETFVVGREGT  129 (156)
T ss_dssp             EEEETTSHHHHHTTCCSSCEEEEECTTSB
T ss_pred             eeeCchhHHHHhcCcCccCeEEEEcCCCC
Confidence            33466788999999999998888854444

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.57  E-value=9.6e-15  Score=97.60  Aligned_cols=72  Identities=15%  Similarity=0.307  Sum_probs=52.3

Q ss_pred             eEEEEEE--cCCCHHHHhhhHHHHHHHHHhcc-CcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEe
Q psy3452           2 FYSILFY--SPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAID   78 (116)
Q Consensus         2 ~v~v~F~--a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~   78 (116)
                      +|+|+||  ||||+    +.|.|+++++.+.+ ...+.+                                     +.+|
T Consensus        35 ~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~-------------------------------------akVD   73 (248)
T 2c0g_A           35 YSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLI-------------------------------------ATVG   73 (248)
T ss_dssp             EEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEE-------------------------------------EEEE
T ss_pred             CEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEE-------------------------------------EEEE
Confidence            6899999  99999    99999999999864 223444                                     5555


Q ss_pred             ccC-----ccchhhhcCCC--CCCEEEEecCCcccCCcCC--CCCC
Q psy3452          79 CTE-----HGPLCKEYDIK--GYPTFQYFHYFNKQSPSPY--HNDY  115 (116)
Q Consensus        79 ~~~-----~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~y--~g~~  115 (116)
                      |+.     +.+++++|+|+  ++||+++|+ |+...+..|  .|..
T Consensus        74 ~d~~g~~~n~~la~~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~  118 (248)
T 2c0g_A           74 VKDYGELENKALGDRYKVDDKNFPSIFLFK-GNADEYVQLPSHVDV  118 (248)
T ss_dssp             ECSSTTCTTHHHHHHTTCCTTSCCEEEEES-SSSSSEEECCTTSCC
T ss_pred             CCcccccccHHHHHHhCCCcCCCCeEEEEe-CCcCcceeecccCCC
Confidence            554     66777788888  888888887 652234566  6654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.57  E-value=1.9e-14  Score=88.68  Aligned_cols=86  Identities=12%  Similarity=0.240  Sum_probs=65.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-c----cccccCCccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-G----PLCKEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      .+++|.||++||++|+.+.|.+.++.+.+++. .+.++.++.+.+ .    ...+++++. +|                 
T Consensus        29 k~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~-~~-----------------   89 (154)
T 3kcm_A           29 QVVIVNFWATWCPPCREEIPSMMRLNAAMAGK-PFRMLCVSIDEGGKVAVEEFFRKTGFT-LP-----------------   89 (154)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEEECCTTHHHHHHHHHHHHCCC-CC-----------------
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEEcCCcchHHHHHHHHHcCCC-ee-----------------
Confidence            47899999999999999999999999999875 488888888875 2    223343332 22                 


Q ss_pred             EEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                       +-.+.+..+++.|++.++|+++++++++++
T Consensus        90 -~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  119 (154)
T 3kcm_A           90 -VLLDADKRVGKLYGTTGVPETFVIDRHGVI  119 (154)
T ss_dssp             -EEECTTCHHHHHHTCCSBCEEEEECTTSBE
T ss_pred             -EEecCchHHHHHhCCCCCCeEEEECCCCcE
Confidence             113567789999999999998888555443

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.57  E-value=5.1e-15  Score=92.17  Aligned_cols=85  Identities=22%  Similarity=0.414  Sum_probs=63.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC----CccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY----DIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++||++|+.+.|.+.++.+.+++. .+.++.++++.+.+.++++    ++. +|.                 
T Consensus        35 k~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~-~~~-----------------   95 (165)
T 3or5_A           35 KAYIVNFFATWCPPCRSEIPDMVQVQKTWASR-GFTFVGIAVNEQLPNVKNYMKTQGII-YPV-----------------   95 (165)
T ss_dssp             CEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-TEEEEEEECSCCHHHHHHHHHHHTCC-SCE-----------------
T ss_pred             CEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCC-Cce-----------------
Confidence            47899999999999999999999999999875 4999999998765544433    332 221                 


Q ss_pred             EeccCccchhhhc------CCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEY------DIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~------~v~~~Pt~~~~~~g~~~  106 (116)
                      +. + ..++.+.|      ++.++|+++++++++++
T Consensus        96 ~~-~-~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i  129 (165)
T 3or5_A           96 MM-A-TPELIRAFNGYIDGGITGIPTSFVIDASGNV  129 (165)
T ss_dssp             EE-C-CHHHHHHHHTTSTTCSCSSSEEEEECTTSBE
T ss_pred             Ee-c-CHHHHHHHhhhhccCCCCCCeEEEECCCCcE
Confidence            11 2 23677777      89999999999555443

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.56  E-value=6.8e-15  Score=91.95  Aligned_cols=84  Identities=12%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC------------------Cccc----ccccCCccccc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT------------------EHGP----LCKEYDIKGYP   58 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~------------------~~~~----~~~~~~v~~~P   58 (116)
                      ++++|+||++||++|+.+.|.+.++.+.++   .+.++.++++                  .+.+    ..+++++..+|
T Consensus        38 k~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           38 DVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             SEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            478999999999999999999999999998   5888888887                  3332    23344443333


Q ss_pred             eEEEcCceeeeceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          59 TFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        59 t~~~~~~~v~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+                .  + +.++.+.|+|.++|+++++++++++
T Consensus       115 ~~----------------~--d-~~~~~~~~~v~~~P~~~lid~~G~i  143 (165)
T 3ha9_A          115 MV----------------M--D-DGSLVEKFNVRSIDYIVIMDKSSNV  143 (165)
T ss_dssp             EE----------------E--C-CSHHHHHTTCCSSSEEEEEETTCCE
T ss_pred             EE----------------e--C-hHHHHHHhCCCCceEEEEEcCCCcE
Confidence            11                1  3 6789999999999999999655554

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.56  E-value=7.9e-15  Score=91.40  Aligned_cols=25  Identities=12%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHH
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      ++|+|+|||+||++|+.+.|.+.+.
T Consensus        45 KpVlV~F~A~WC~~Ck~m~p~~~~~   69 (151)
T 3ph9_A           45 KPLMVIHHLEDCQYSQALKKVFAQN   69 (151)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             CcEEEEEECCCCHhHHHHHHHHhcC
Confidence            4799999999999999999998864

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.34  E-value=2.3e-16  Score=96.26  Aligned_cols=93  Identities=12%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      +++|+||++||++|+.+.|.+.++.+.+++.. .+.++.++++...+..+++--+.-.            ......+..+
T Consensus        28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~------------~~~~~~~~~~   95 (143)
T 2lus_A           28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHG------------DWLAIPYRSG   95 (143)
Confidence            78999999999999999999999999985322 6778888877654333332211100            0001122234


Q ss_pred             CccchhhhcCCCCCCEEEEecCCccc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ...+++++|+|.++||++++++++++
T Consensus        96 ~~~~~~~~~~v~~~P~~~lid~~G~i  121 (143)
T 2lus_A           96 PASNVTAKYGITGIPALVIVKKDGTL  121 (143)
Confidence            55789999999999999999744443

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.56  E-value=2.2e-15  Score=94.42  Aligned_cols=83  Identities=10%  Similarity=0.065  Sum_probs=59.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+||++||++|+++.|.++++.+.     .+.++.++++.+.+..    +++++.. |                 .
T Consensus        52 k~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~-~-----------------~  108 (168)
T 2b1k_A           52 KPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPY-A-----------------L  108 (168)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCC-S-----------------E
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCC-c-----------------e
Confidence            3689999999999999999999998875     3677777776554322    3333221 1                 1


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +..+.+.+++++|+|.++|+++++++++++
T Consensus       109 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  138 (168)
T 2b1k_A          109 SLFDGDGMLGLDLGVYGAPETFLIDGNGII  138 (168)
T ss_dssp             EEEETTCHHHHHHTCCSSSEEEEECTTSBE
T ss_pred             eeECcchHHHHHcCccccCEEEEECCCCeE
Confidence            223567889999999999988777554443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=1e-14  Score=89.92  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             CeEEEEEEcCCCHH--HHhhhHHHHHHHHHh-ccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceee
Q psy3452           1 MFYSILFYSPGCGY--CKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         1 ~~v~v~F~a~wC~~--C~~~~~~~~~~~~~~-~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      ++++|+||++||++  |+.+.|.+.++.+++ ++. .+.++.++.+..++    ..+++++. +|               
T Consensus        34 k~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~-~~---------------   96 (150)
T 3fw2_A           34 KSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLGISLDVDKQQWKDAIKRDTLD-WE---------------   96 (150)
T ss_dssp             SEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS-SEEEEEEECCSCHHHHHHHHHHTTCC-SE---------------
T ss_pred             CEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC-CeEEEEEEcCCCHHHHHHHHHHhCCC-ce---------------
Confidence            47999999999999  999999999999999 554 48999998887643    23344442 22               


Q ss_pred             EEEE-ec-cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          74 LAAI-DC-TEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v-~~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                        .+ +. ..+.++.+.|+|.++|+++++++++++
T Consensus        97 --~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i  129 (150)
T 3fw2_A           97 --QVCDFGGLNSEVAKQYSIYKIPANILLSSDGKI  129 (150)
T ss_dssp             --EECCSCGGGCHHHHHTTCCSSSEEEEECTTSBE
T ss_pred             --EEEcCcccchHHHHHcCCCccCeEEEECCCCEE
Confidence              11 11 126789999999999999999655544

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.55  E-value=3.8e-14  Score=90.04  Aligned_cols=86  Identities=10%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcce------EEEEEeCCC-cccc----cccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKV------ALAAIDCTE-HGPL----CKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~------~~~~vd~~~-~~~~----~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+||++||++|+.+.|.+.++.+++++. .+      .++.++++. +.+.    ++++++. +|.+         
T Consensus        60 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~-~~~~---------  128 (183)
T 3lwa_A           60 QVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLD-YPSI---------  128 (183)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCC-SCEE---------
T ss_pred             CEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCC-ccEE---------
Confidence            47899999999999999999999999999874 26      999999987 4433    3344543 3311         


Q ss_pred             ceeeEEEEeccCccchhhhc---CCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEY---DIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~  106 (116)
                               .+....+.+.+   ++.++|+++++++++++
T Consensus       129 ---------~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i  159 (183)
T 3lwa_A          129 ---------YDPPFMTAASLGGVPASVIPTTIVLDKQHRP  159 (183)
T ss_dssp             ---------ECTTCGGGGGTTTCCTTCCSEEEEECTTSCE
T ss_pred             ---------ECCcchHHHHhccCCCCCCCeEEEECCCCcE
Confidence                     24456666666   58999998888655553

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.55  E-value=9.4e-15  Score=88.96  Aligned_cols=61  Identities=16%  Similarity=0.278  Sum_probs=56.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccc--cceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG--YPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~~   65 (116)
                      +++++||++ |++|+.+.|.++++++++.+  ++.|+++|.++++.++++|++++  +||++++++
T Consensus        25 pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g--k~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~   87 (133)
T 2djk_A           25 PLAYIFAET-AEERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEV   87 (133)
T ss_dssp             CEEEEECSC-SSSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECT
T ss_pred             CEEEEEecC-hhhHHHHHHHHHHHHHHhCC--eEEEEEEchHHhHHHHHHcCCCcccCCEEEEEec
Confidence            689999999 89999999999999999987  79999999999999999999988  999988875

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.55  E-value=4.6e-15  Score=94.13  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=61.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++||++|+++.|.++++.++     .+.++.++.+...+    ..+++++..                  ..
T Consensus        59 k~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~------------------~~  115 (176)
T 3kh7_A           59 KPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPY------------------LL  115 (176)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCC------------------SE
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCC------------------ce
Confidence            3689999999999999999999998876     37777777655543    333444322                  11


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+..+++.|+|.++|+++++++++++
T Consensus       116 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  145 (176)
T 3kh7_A          116 SISDADGTLGLDLGVYGAPETYLIDKQGII  145 (176)
T ss_dssp             EEEETTCHHHHHHTCCSSCEEEEECTTCBE
T ss_pred             EEECCcchHHHHcCCCCCCeEEEECCCCeE
Confidence            233567889999999999999999665554

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.54  E-value=2.9e-14  Score=94.88  Aligned_cols=78  Identities=22%  Similarity=0.393  Sum_probs=55.4

Q ss_pred             eEEEEEEc--CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452           2 FYSILFYS--PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         2 ~v~v~F~a--~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      +|+|+|||  |||+    +.|.|+++++.+.+...+.++++|+++..                                |
T Consensus        24 ~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g--------------------------------~   67 (240)
T 2qc7_A           24 FVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYG--------------------------------D   67 (240)
T ss_dssp             EEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSS--------------------------------S
T ss_pred             CEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCccc--------------------------------c
Confidence            68999999  9999    99999999999975334656555543210                                2


Q ss_pred             cCccchhhhcCCC--CCCEEEEecCCcccCCcCCCCCC
Q psy3452          80 TEHGPLCKEYDIK--GYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        80 ~~~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ..+.+++++|+|+  ++||+++|++|+......|.|..
T Consensus        68 ~~~~~l~~~~~V~~~~~PTl~~f~~G~~~~~~~y~G~~  105 (240)
T 2qc7_A           68 KLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAV  105 (240)
T ss_dssp             CCSHHHHHHTTCCGGGCSEEEEEETTCSSCCEECCSCS
T ss_pred             hhhHHHHHHcCCCCCCCCEEEEEeCCCcCcceeecCCC
Confidence            3466777888888  88888888777621346777754

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.52  E-value=1.6e-14  Score=89.14  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=59.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--Cccc----ccccCCccccceEEEcCceeeeceeeE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGP----LCKEYDIKGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      .+++|.||++||++|+++.|.+.++.+++    .+.++.++++  ...+    ..+++++ .                 +
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~~~~~~~-~-----------------~   88 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEYMKTYPR-F-----------------I   88 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHHHTTCTT-E-----------------E
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHHHHHcCC-C-----------------c
Confidence            36899999999999999999999999999    3667777773  3322    2333332 1                 1


Q ss_pred             EEEe--ccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          75 AAID--CTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        75 ~~v~--~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ..+.  ......+++.|++.++|++++++++++
T Consensus        89 ~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~  121 (154)
T 3ia1_A           89 PLLASDRDRPHEVAARFKVLGQPWTFVVDREGK  121 (154)
T ss_dssp             ECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSE
T ss_pred             ccccccccchHHHHHHhCCCcccEEEEECCCCC
Confidence            1111  136778999999999999999955444

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.52  E-value=1.8e-14  Score=94.50  Aligned_cols=59  Identities=22%  Similarity=0.366  Sum_probs=54.9

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ++++||++||++|+++.|.++++++.++   .+.++.+|++++++++++|+++++||+++ ++
T Consensus       139 ~~v~F~a~wC~~C~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~-~G  197 (229)
T 2ywm_A          139 EIWVFVTTSCGYCPSAAVMAWDFALAND---YITSKVIDASENQDLAEQFQVVGVPKIVI-NK  197 (229)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEEGGGCHHHHHHTTCCSSSEEEE-GG
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHCC---CeEEEEEECCCCHHHHHHcCCcccCEEEE-CC
Confidence            4889999999999999999999999984   69999999999999999999999999998 44

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.50  E-value=1.1e-14  Score=95.32  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-------cc----cccccCCccccceEEEcCceeeec
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-------HG----PLCKEYDIKGYPTFHHLALTIMII   70 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~----~~~~~~~v~~~Pt~~~~~~~v~f~   70 (116)
                      +++|+||++||++|+...|.++++.+++++. .+.++.++.+.       ..    ..++++++ .+|            
T Consensus        61 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~-~~~------------  126 (218)
T 3u5r_E           61 ALLVAFISNRCPFVVLIREALAKFAGDYAGQ-GLAVVAINSNDAQAFPEETLERVGAEVKAYGY-GFP------------  126 (218)
T ss_dssp             EEEEEECCSSCHHHHTTHHHHHHHHHHHTTT-TEEEEEEECSCTTTCGGGSHHHHHHHHHHHTC-CSC------------
T ss_pred             eEEEEEECCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCcccccccCCHHHHHHHHHHhCC-Ccc------------
Confidence            4899999999999999999999999999875 38888888852       22    23334443 222            


Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                            +-.+.+.++++.|+|.+.|+++++++++++
T Consensus       127 ------~l~D~~~~~~~~~~v~~~P~~~liD~~G~i  156 (218)
T 3u5r_E          127 ------YLKDASQSVAKAYGAACTPDFFLYDRERRL  156 (218)
T ss_dssp             ------EEECTTCHHHHHHTCCEESEEEEECTTCBE
T ss_pred             ------EEECCccHHHHHcCCCCCCeEEEECCCCcE
Confidence                  112567889999999999999999665553

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.50  E-value=3.2e-14  Score=90.70  Aligned_cols=85  Identities=22%  Similarity=0.322  Sum_probs=64.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-----------ccccccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-----------GPLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+||++||++|+++.|.++++.+++++.  +.++.++.+..           ...++++++. +|           
T Consensus        34 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~-~~-----------   99 (188)
T 2cvb_A           34 PLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPEKMAAFAEEHGIF-FP-----------   99 (188)
T ss_dssp             SEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCC-SC-----------
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHHHHHHHHHHhCCC-ce-----------
Confidence            47899999999999999999999999999873  88999988532           1233344432 22           


Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                             +-.+.+.++++.|++.+.|+++++++++++
T Consensus       100 -------~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  129 (188)
T 2cvb_A          100 -------YLLDETQEVAKAYRALRTPEVFLFDERRLL  129 (188)
T ss_dssp             -------EEECSSSHHHHHTTCCEESEEEEECTTCBE
T ss_pred             -------EEECCcchHHHHcCCCCCCeEEEECCCCcE
Confidence                   112567789999999999999999655544

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.50  E-value=6.1e-14  Score=97.92  Aligned_cols=86  Identities=20%  Similarity=0.269  Sum_probs=65.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-----c----cccccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-----G----PLCKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~----~~~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      ++++|+||++||++|+++.|.+.++.+++++. .+.++.++++..     .    +.++++++. +|             
T Consensus        83 K~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~-~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~-fp-------------  147 (352)
T 2hyx_A           83 KVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS-GLAVIGVHTPEYAFEKVPGNVAKGAANLGIS-YP-------------  147 (352)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSGGGGCHHHHHHHHHHHTCC-SC-------------
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHhhcC-CeEEEEEECCcccccCCHHHHHHHHHHcCCC-cc-------------
Confidence            47999999999999999999999999999864 488999987631     1    233444432 22             


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                           +..+.+.++++.|+|.++|+++++++++++
T Consensus       148 -----v~~D~~~~l~~~ygV~~~Pt~~lID~~G~I  177 (352)
T 2hyx_A          148 -----IALDNNYATWTNYRNRYWPAEYLIDATGTV  177 (352)
T ss_dssp             -----EEECTTSHHHHHTTCCEESEEEEECTTSBE
T ss_pred             -----EEeCCcHHHHHHcCCCccCEEEEEeCCCeE
Confidence                 223567889999999999999999554443

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.49  E-value=2e-14  Score=92.03  Aligned_cols=85  Identities=24%  Similarity=0.339  Sum_probs=64.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-------c----cccccCCccccceEEEcCceeeec
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-------G----PLCKEYDIKGYPTFHHLALTIMII   70 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~----~~~~~~~v~~~Pt~~~~~~~v~f~   70 (116)
                      +++|+||++||++|+.+.|.+.++.+++++. .+.++.++++..       .    ...+++++. +|            
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~-~~------------  113 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMPK-GVSFVAINSNDAEQYPEDSPENMKKVAEELGYP-FP------------  113 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCC-SC------------
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCccccccccCHHHHHHHHHHcCCC-ce------------
Confidence            5899999999999999999999999999874 488888888532       1    233344432 22            


Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                            +-.+.+.++++.|+|.++|+++++++++++
T Consensus       114 ------~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  143 (196)
T 2ywi_A          114 ------YLYDETQEVAKAYDAACTPDFYIFDRDLKC  143 (196)
T ss_dssp             ------EEECSSCHHHHHHTCCEESEEEEEETTCBE
T ss_pred             ------EEECCchHHHHHhCCCCCCeEEEEcCCCeE
Confidence                  112567789999999999999999654443

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.49  E-value=5.9e-14  Score=87.67  Aligned_cols=85  Identities=12%  Similarity=0.176  Sum_probs=65.8

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +++|.|| ++||++|+...|.+.++.+++++. .+.++.++.+...   ..++++++. +|                  +
T Consensus        31 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~-~~------------------~   90 (161)
T 3drn_A           31 NIVLYFYPKDDTPGSTREASAFRDNWDLLKDY-DVVVIGVSSDDINSHKRFKEKYKLP-FI------------------L   90 (161)
T ss_dssp             EEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT-CEEEEEEESCCHHHHHHHHHHTTCC-SE------------------E
T ss_pred             CEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHhCCC-ce------------------E
Confidence            4899999 999999999999999999999875 4888888887543   234454443 22                  2


Q ss_pred             eccCccchhhhcCCCC----CCEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIKG----YPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~  106 (116)
                      -.+.+.++.+.|++.+    .|+++++++++++
T Consensus        91 ~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i  123 (161)
T 3drn_A           91 VSDPDKKIRELYGAKGFILPARITFVIDKKGII  123 (161)
T ss_dssp             EECTTSHHHHHTTCCCSSSCCCEEEEECTTSBE
T ss_pred             EECCcHHHHHHcCCCCcCcccceEEEECCCCEE
Confidence            2256788999999999    9999999655554

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.46  E-value=2.8e-14  Score=81.17  Aligned_cols=53  Identities=15%  Similarity=0.353  Sum_probs=44.3

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ++.||++||++|+.+.|.+++++..+       +.++|++++++++++|+++ +||+++ .+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~   55 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PM   55 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TT
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-EC
Confidence            67899999999999999998764332       5789999999899899988 999887 44

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=4.7e-15  Score=92.15  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHH-HHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~-~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      .+++|.||++||++|+++.|.+.+ +.+.++....+.++.++++...+.++++.-+.              ++.+ .+-.
T Consensus        34 k~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--------------~~~~-~~~~   98 (159)
T 2ls5_A           34 KVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKST--------------GVTY-PLGL   98 (159)
Confidence            368999999999999999999998 88888722268888888887655444443221              1111 1122


Q ss_pred             cCccchhhhcC--CCCCCEEEEecCCccc
Q psy3452          80 TEHGPLCKEYD--IKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        80 ~~~~~~~~~~~--v~~~Pt~~~~~~g~~~  106 (116)
                      +.+..+.+.|+  +.++|+++++++++++
T Consensus        99 d~~~~~~~~~~~~~~~~P~~~lid~~G~i  127 (159)
T 2ls5_A           99 DPGADIFAKYALRDAGITRNVLIDREGKI  127 (159)
Confidence            45677888999  5679999999554443

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.46  E-value=5.1e-14  Score=78.57  Aligned_cols=61  Identities=18%  Similarity=0.304  Sum_probs=46.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCCccccceEEEcCcee
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHLALTI   67 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~~v   67 (116)
                      ++.||++||++|+.+.+.++++.++++.  .+.++.+|.+ ++.+++++++++++||+++ ++.+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i-~g~~   65 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKY--TVEIVHLGTDKARIAEAEKAGVKSVPALVI-DGAA   65 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTE--EEEEEETTTCSSTHHHHHHHTCCEEEEEEE-TTEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCC--eEEEEEecCChhhHHHHHHcCCCcCCEEEE-CCEE
Confidence            6789999999999999999988766543  4555555554 4567788899999999877 5543

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.45  E-value=7.2e-13  Score=82.93  Aligned_cols=85  Identities=13%  Similarity=0.123  Sum_probs=64.2

Q ss_pred             CeEEEEEEcCC-CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPG-CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.||++| |++|+...|.+.++.+++ .  .+.++.++.+..   .+.++++++..+|.+                
T Consensus        45 k~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~----------------  105 (167)
T 2jsy_A           45 KVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G--DVNVYTISADLPFAQARWCGANGIDKVETL----------------  105 (167)
T ss_dssp             SCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S--SCEEEEEECSSGGGTSCCGGGSSCTTEEEE----------------
T ss_pred             CeEEEEEecCCCCCchHHHHHHHHHHHHHc-C--CCEEEEEECCCHHHHHHHHHhcCCCCceEe----------------
Confidence            36899999999 999999999999999999 3  688888887753   334555555443321                


Q ss_pred             Eecc-CccchhhhcCCCC------CCEEEEecCCccc
Q psy3452          77 IDCT-EHGPLCKEYDIKG------YPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~-~~~~~~~~~~v~~------~Pt~~~~~~g~~~  106 (116)
                        .+ .+.++.+.|++..      .|+++++++.+++
T Consensus       106 --~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i  140 (167)
T 2jsy_A          106 --SDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKV  140 (167)
T ss_dssp             --EGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCE
T ss_pred             --eCCchhHHHHHhCCccccCCceeeEEEEEcCCCcE
Confidence              13 5678999999987      4999999765554

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.41  E-value=5.6e-13  Score=83.88  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=36.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++|+||++||++|+ .+|.+.++.+++++. .+.++.++++
T Consensus        33 k~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~-~v~vv~vs~d   73 (171)
T 3cmi_A           33 KVVLIVNVASKCGFTP-QYKELEALYKRYKDE-GFTIIGFPCN   73 (171)
T ss_dssp             CEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG-TEEEEEEEEC
T ss_pred             CEEEEEEEecCCCcch-hHHHHHHHHHHhccC-CeEEEEEECc
Confidence            4789999999999999 999999999999875 4888888764

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.38  E-value=7.2e-13  Score=82.36  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=63.5

Q ss_pred             CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhccC---cceEEEEEeCCCcc-------cccccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLKDN---HKVALAAIDCTEHG-------PLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~-------~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+||++||++ |+...|.++++.+++++.   ..+.++.++++...       +.+++++.. +|           
T Consensus        24 k~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~-~~-----------   91 (164)
T 2ggt_A           24 QWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPK-LV-----------   91 (164)
T ss_dssp             CEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSS-CE-----------
T ss_pred             CEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCC-eE-----------
Confidence            47899999999998 999999999999998752   25788888877532       233444432 11           


Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCC---------------EEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYP---------------TFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~P---------------t~~~~~~g~~~  106 (116)
                          ....+.+....+++.|+|...|               +++++++++++
T Consensus        92 ----~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i  139 (164)
T 2ggt_A           92 ----GLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEF  139 (164)
T ss_dssp             ----EEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCE
T ss_pred             ----EEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeE
Confidence                1111234556789999999999               78888655444

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.38  E-value=4.8e-13  Score=83.76  Aligned_cols=90  Identities=9%  Similarity=0.048  Sum_probs=62.2

Q ss_pred             CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhccC---cceEEEEEeCCCc---c----cccccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLKDN---HKVALAAIDCTEH---G----PLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~---~----~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+||++||++ |+...|.++++.+++++.   ..+.++.++++..   .    ..+++++... |           
T Consensus        27 k~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~-~-----------   94 (171)
T 2rli_A           27 QWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRL-L-----------   94 (171)
T ss_dssp             SEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTC-C-----------
T ss_pred             CEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCe-E-----------
Confidence            47899999999998 999999999999999631   2688888887742   1    2334444321 1           


Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCC---------------EEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYP---------------TFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~P---------------t~~~~~~g~~~  106 (116)
                          +..-+.+....+++.|+|...|               +++++++.+++
T Consensus        95 ----~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i  142 (171)
T 2rli_A           95 ----GLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLF  142 (171)
T ss_dssp             ----EEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCE
T ss_pred             ----EEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeE
Confidence                1111112345788899999888               88888655544

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.38  E-value=2.4e-13  Score=87.49  Aligned_cols=86  Identities=8%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---ccc-------CCccccceEEEcCceeee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKE-------YDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~-------~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+|| ++||++|+...|.+.++.+++++. ++.++.++.+....+   .++       +++. +|           
T Consensus        34 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~-~~-----------  100 (198)
T 1zof_A           34 NGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVS-FP-----------  100 (198)
T ss_dssp             SEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCS-SC-----------
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhhhhcccccCce-eE-----------
Confidence            47899999 999999999999999999999765 488888888764322   122       2221 22           


Q ss_pred             ceeeEEEEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~  106 (116)
                             +-.+.+.++++.|++.     +.|+++++++++++
T Consensus       101 -------~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i  135 (198)
T 1zof_A          101 -------MVADITKSISRDYDVLFEEAIALRGAFLIDKNMKV  135 (198)
T ss_dssp             -------EEECTTSHHHHHTTCEETTTEECEEEEEEETTTEE
T ss_pred             -------EEECCchHHHHHhCCcccCCcccceEEEECCCCEE
Confidence                   1225678899999999     99999999655443

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.37  E-value=5e-13  Score=85.26  Aligned_cols=90  Identities=11%  Similarity=0.079  Sum_probs=64.3

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+|| ++||++|+...|.+.++.+++++. .+.++.++.+....+   +++++...              .+.+. 
T Consensus        32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~--------------~~~~~-   95 (187)
T 1we0_A           32 KWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVG--------------SIEYI-   95 (187)
T ss_dssp             SEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHH--------------TCCSE-
T ss_pred             CCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhcccc--------------CCCce-
Confidence            47899999 999999999999999999999865 488888888764322   22321000              01111 


Q ss_pred             EeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.++++.|++.      +.|+++++++++++
T Consensus        96 ~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i  131 (187)
T 1we0_A           96 MIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVI  131 (187)
T ss_dssp             EEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             EEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeE
Confidence            1224568899999999      99999999655443

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.36  E-value=4.1e-13  Score=86.28  Aligned_cols=89  Identities=8%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCC-ccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYD-IKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~-v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++|+|| ++||++|+...|.+.++.+++++. .+.++.++.+....   ..++++ ...+               .+.
T Consensus        46 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~~~~~~~~~~~~---------------~~~  109 (195)
T 2bmx_A           46 KWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTL---------------PFP  109 (195)
T ss_dssp             CEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGC---------------CSC
T ss_pred             CcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhccccCC---------------cee
Confidence            47899999 999999999999999999999865 48888888876432   223331 0011               111


Q ss_pred             EEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~  106 (116)
                       +-.+.+.++.+.|++.     +.|+++++++++++
T Consensus       110 -~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i  144 (195)
T 2bmx_A          110 -MLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEI  144 (195)
T ss_dssp             -EEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBE
T ss_pred             -EEeCCchHHHHHhCCcccCCCccceEEEEcCCCeE
Confidence             1124568899999999     99999999655544

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.36  E-value=1.5e-13  Score=93.57  Aligned_cols=56  Identities=21%  Similarity=0.319  Sum_probs=39.2

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC-CCcccccccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC-TEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~-~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      +++|||+||++|+++.|.+++++++++   .+.+.++|. +++++++++++++++||+++
T Consensus       201 vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i  257 (291)
T 3kp9_A          201 GTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII  257 (291)
T ss_dssp             CEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE
Confidence            689999999999999999999886652   111111112 23567777778888887554

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.35  E-value=4.7e-13  Score=83.13  Aligned_cols=87  Identities=14%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +++|.|| ++||++|+...|.+.++.+++++. .+.++.++.+...   +.++++++ .+|.+                .
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~-~~~~~----------------~   99 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGPPPTHKIWATQSGF-TFPLL----------------S   99 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCCHHHHHHHHHHHTC-CSCEE----------------E
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CcEEEEEeCCCHHHHHHHHHhcCC-CceEE----------------e
Confidence            7899998 999999999999999999999765 5888888887543   23344444 23311                1


Q ss_pred             eccCccchhhhcCCC----CCC--EEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIK----GYP--TFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~----~~P--t~~~~~~g~~~  106 (116)
                      |...+.++.+.|++.    ++|  +++++++++++
T Consensus       100 d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i  134 (160)
T 1xvw_A          100 DFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGII  134 (160)
T ss_dssp             CTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBE
T ss_pred             cCCcChHHHHHcCCccccCCCeeeeEEEECCCCeE
Confidence            211367899999999    999  88888555444

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.35  E-value=8.7e-13  Score=84.30  Aligned_cols=42  Identities=17%  Similarity=0.159  Sum_probs=37.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|+||++||++|+..+|.+.++.+++++. .+.++.++++
T Consensus        47 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d   88 (187)
T 3dwv_A           47 SPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSN   88 (187)
T ss_dssp             SCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBC
T ss_pred             CEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECc
Confidence            47899999999999999999999999999875 3888888776

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.35  E-value=2.5e-12  Score=81.96  Aligned_cols=42  Identities=10%  Similarity=0.123  Sum_probs=37.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++|.||++||++|++..|.+.++.+++++. .+.++.++++
T Consensus        50 k~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~is~d   91 (185)
T 2gs3_A           50 FVCIVTNVASQGGKTEVNYTQLVDLHARYAEC-GLRILAFPCN   91 (185)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CEEEEEEecCCCCchHHHHHHHHHHHHHhhcC-CeEEEEEECc
Confidence            47899999999999999999999999999875 4888888876

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.34  E-value=1.1e-12  Score=83.95  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccC----CccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEY----DIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~----~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      ++++|+|| ++||++|....|.+.++.+++++. .+.++.++.+.....   .+++    ++...+              
T Consensus        32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~--------------   96 (192)
T 2h01_A           32 KYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIK--------------   96 (192)
T ss_dssp             CEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCS--------------
T ss_pred             CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCC--------------
Confidence            47899999 999999999999999999999754 588888888754322   2222    221211              


Q ss_pred             eEEEEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~  106 (116)
                       + .+-.+.+.++++.|++.     ..|+++++++++++
T Consensus        97 -~-~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i  133 (192)
T 2h01_A           97 -H-TLISDISKSIARSYDVLFNESVALRAFVLIDKQGVV  133 (192)
T ss_dssp             -S-EEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBE
T ss_pred             -c-CeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEE
Confidence             1 12225578899999999     89999999655554

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.34  E-value=1.3e-12  Score=83.63  Aligned_cols=42  Identities=19%  Similarity=0.249  Sum_probs=37.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|+||++||++|+..+|.+.++.+++++. .+.++.++++
T Consensus        49 k~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d   90 (190)
T 2vup_A           49 SPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCN   90 (190)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECC
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcC
Confidence            47899999999999999999999999999874 4888888877

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.33  E-value=4.5e-12  Score=82.51  Aligned_cols=42  Identities=10%  Similarity=0.048  Sum_probs=37.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++|+|||+||++|++.+|.++++.+++++. .+.++.++++
T Consensus        48 k~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d   89 (208)
T 2f8a_A           48 KVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   89 (208)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECC
Confidence            47899999999999999999999999999875 4888888876

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.33  E-value=1.5e-12  Score=85.47  Aligned_cols=87  Identities=9%  Similarity=0.102  Sum_probs=64.3

Q ss_pred             CeEEEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----C--ccccceEEEcCceeeec
Q psy3452           1 MFYSILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----D--IKGYPTFHHLALTIMII   70 (116)
Q Consensus         1 ~~v~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~--v~~~Pt~~~~~~~v~f~   70 (116)
                      .+++|+||+ +||++|....|.+.++.+++++. .+.++.|+.+....   ..+++    +  -..+|            
T Consensus        70 k~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~------------  136 (222)
T 3ztl_A           70 KYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR-NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIP------------  136 (222)
T ss_dssp             SEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSC------------
T ss_pred             CeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhhcccccccee------------
Confidence            478999996 99999999999999999999865 48888888875432   22222    1  11222            


Q ss_pred             eeeEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                            +-.+.+.++.+.|++.      ..|+++++++.+++
T Consensus       137 ------~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I  172 (222)
T 3ztl_A          137 ------LLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGIL  172 (222)
T ss_dssp             ------EEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEE
T ss_pred             ------EEeCCchHHHHHcCCeecCCCCccceEEEECCCCeE
Confidence                  1225568899999999      89999999665554

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.33  E-value=3.4e-13  Score=85.73  Aligned_cols=43  Identities=12%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      .+++|+||++||++|++.+|.++++.+++++. .+.++.++++.
T Consensus        50 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~v~vv~vs~d~   92 (181)
T 2p31_A           50 SVSLVVNVASECGFTDQHYRALQQLQRDLGPH-HFNVLAFPCNQ   92 (181)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCC
T ss_pred             CEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEECcC
Confidence            47899999999999999999999999999874 48888888763

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.32  E-value=4.2e-12  Score=80.69  Aligned_cols=42  Identities=12%  Similarity=0.230  Sum_probs=37.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|+||++||++|+...|.+.++.+++++. .+.++.++++
T Consensus        48 k~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d   89 (183)
T 2obi_A           48 FVCIVTNVASQCGKTEVNYTQLVDLHARYAEC-GLRILAFPCN   89 (183)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC-CeEEEEEECC
Confidence            47899999999999999999999999999874 4888888876

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.32  E-value=2.3e-12  Score=84.19  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----CccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      .+++|.|| ++||++|....|.+.++.+++++. ++.++.++.+....   .++++    ++..++              
T Consensus        53 k~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~--------------  117 (213)
T 2i81_A           53 KYVLLYFYPLDFTFVCPSEIIALDKALDAFHER-NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIK--------------  117 (213)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCS--------------
T ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCC--------------
Confidence            37899999 999999999999999999999754 58888888875432   22222    222211              


Q ss_pred             eEEEEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~  106 (116)
                       + .+-.+.+.++++.|++.     ..|+++++++++++
T Consensus       118 -f-p~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i  154 (213)
T 2i81_A          118 -H-TLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIV  154 (213)
T ss_dssp             -S-EEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBE
T ss_pred             -c-eEEECCchHHHHHhCCccccCCcccEEEEECCCCEE
Confidence             1 12235678899999999     89999999665554

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.32  E-value=1.4e-12  Score=84.24  Aligned_cols=89  Identities=10%  Similarity=0.097  Sum_probs=65.0

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccC----CccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEY----DIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~----~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      ++++|+|| ++||++|....|.+.++.+++++. .+.++.++.+.....   .+++    ++...+              
T Consensus        37 k~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~--------------  101 (202)
T 1uul_A           37 KWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMN--------------  101 (202)
T ss_dssp             SEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCS--------------
T ss_pred             CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCc--------------
Confidence            37899999 999999999999999999999764 588889988754322   2222    221211              


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                       + .+-.+.+.++++.|++.      +.|+++++++++++
T Consensus       102 -~-p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i  139 (202)
T 1uul_A          102 -I-PILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNL  139 (202)
T ss_dssp             -S-CEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBE
T ss_pred             -e-eEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEE
Confidence             1 11224678899999999      99999999665554

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.31  E-value=5.8e-12  Score=79.66  Aligned_cols=85  Identities=5%  Similarity=-0.000  Sum_probs=60.1

Q ss_pred             CeEEEEEEcCC-CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPG-CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++| |++|+...|.+.++.++ +   .+.++.++.+....+   ++++++..+|                  
T Consensus        45 k~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~---~v~vv~Is~D~~~~~~~~~~~~~~~~~~------------------  102 (175)
T 1xvq_A           45 KSVLLNIFPSVDTPVCATSVRTFDERAAA-S---GATVLCVSKDLPFAQKRFCGAEGTENVM------------------  102 (175)
T ss_dssp             SCEEEEECSCCCSSCCCHHHHHHHHHHHH-T---TCEEEEEESSCHHHHTTCC------CEE------------------
T ss_pred             CEEEEEEEeCCCCchHHHHHHHHHHHHhh-c---CCEEEEEECCCHHHHHHHHHHcCCCCce------------------
Confidence            36899999999 99999999999999888 3   688888888755432   2333322211                  


Q ss_pred             EeccCccchhhhcCCCCC---------CEEEEecCCcccC
Q psy3452          77 IDCTEHGPLCKEYDIKGY---------PTFQYFHYFNKQS  107 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~---------Pt~~~~~~g~~~~  107 (116)
                      +-.+.+.++.+.|++...         |+++++++++++.
T Consensus       103 ~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~  142 (175)
T 1xvq_A          103 PASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVA  142 (175)
T ss_dssp             EEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEE
T ss_pred             EeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEE
Confidence            222445789999999887         8999997665553

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.31  E-value=2.7e-12  Score=84.20  Aligned_cols=89  Identities=10%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccC----CccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEY----DIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~----~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      ++++|+|| ++||++|+...|.+.++.+++++. .+.++.++.+.....   ++++    ++...               
T Consensus        57 k~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~---------------  120 (220)
T 1zye_A           57 KYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHM---------------  120 (220)
T ss_dssp             SEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSC---------------
T ss_pred             CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHhCCCcCC---------------
Confidence            47899999 999999999999999999999764 588899988764322   2222    22121               


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      .+ .+-.+.+.++++.|++.      ..|+++++++.+++
T Consensus       121 ~f-p~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I  159 (220)
T 1zye_A          121 NI-ALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVI  159 (220)
T ss_dssp             SS-EEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             ce-EEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEE
Confidence            11 12235678899999999      99999999665554

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.31  E-value=1.9e-12  Score=72.53  Aligned_cols=54  Identities=22%  Similarity=0.430  Sum_probs=42.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCC--ccccceE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYD--IKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~   60 (116)
                      ++.|+++||++|+++.+.++++++.++   .+.+..+|.++++    +++++++  +.++|++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i   62 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI   62 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEEecccChHHHHHHHHHhCCCCceeCeE
Confidence            566999999999999999999988765   4788888876553    4555666  6666665

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.30  E-value=3.2e-12  Score=79.72  Aligned_cols=43  Identities=16%  Similarity=0.231  Sum_probs=38.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      .+++|+||++||++|+..+|.+.++.+++++. .+.++.++++.
T Consensus        32 k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~   74 (169)
T 2v1m_A           32 HVCLIVNVACKCGATDKNYRQLQEMHTRLVGK-GLRILAFPCNQ   74 (169)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCC
T ss_pred             CEEEEEEeeccCCchHHHHHHHHHHHHHhhcC-CeEEEEEECCc
Confidence            47899999999999999999999999999874 48888888763

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.29  E-value=2.8e-12  Score=79.86  Aligned_cols=85  Identities=9%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             eEEEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +++|.||+ +||++|....|.+.++.+++++. .+.++.+..+...   ..++++++. +|                  +
T Consensus        37 ~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~-~~------------------~   96 (163)
T 3gkn_A           37 WLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFA-FP------------------L   96 (163)
T ss_dssp             CEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCS-SC------------------E
T ss_pred             cEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCC-ce------------------E
Confidence            68999998 99999999999999999999875 4778888877433   233444432 22                  1


Q ss_pred             eccCccchhhhcCCCC------------CCEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIKG------------YPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~------------~Pt~~~~~~g~~~  106 (116)
                      -.+.+.++.+.|++..            .|+++++++.+++
T Consensus        97 ~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i  137 (163)
T 3gkn_A           97 VSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQV  137 (163)
T ss_dssp             EECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCE
T ss_pred             EECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeE
Confidence            1256778999999987            9999999766665

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.27  E-value=3.6e-12  Score=83.76  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----CccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      .+++|+|| ++||++|...+|.+.++.+++++. .+.++.++.+....   .++++    ++...+              
T Consensus        57 k~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~--------------  121 (221)
T 2c0d_A           57 KYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK-NVELLGISVDSVYSHLAWKNMPIEKGGIGNVE--------------  121 (221)
T ss_dssp             CEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCS--------------
T ss_pred             CeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhhhhcCccCCc--------------
Confidence            47899999 999999999999999999999754 58888888865432   23333    221211              


Q ss_pred             eEEEEeccCccchhhhcCC-----CCCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDI-----KGYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v-----~~~Pt~~~~~~g~~~  106 (116)
                       +. +-.+.+.++++.|++     ...|+++++++.+++
T Consensus       122 -fp-~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I  158 (221)
T 2c0d_A          122 -FT-LVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCV  158 (221)
T ss_dssp             -SE-EEECTTSHHHHHTTCEETTTEECEEEEEECTTSBE
T ss_pred             -eE-EEECCchHHHHHcCCcccCCCccceEEEECCCCeE
Confidence             11 112457789999999     478999999766554

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.27  E-value=6.2e-12  Score=82.01  Aligned_cols=87  Identities=9%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----Ccc--ccceEEEcCceeeec
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DIK--GYPTFHHLALTIMII   70 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v~--~~Pt~~~~~~~v~f~   70 (116)
                      ++++|+|| ++||++|...+|.+.++.+++++. .+.++.++.+....   .++++    ++.  .+|            
T Consensus        49 k~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp------------  115 (211)
T 2pn8_A           49 KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIP------------  115 (211)
T ss_dssp             SEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSC------------
T ss_pred             CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhccCccCCceE------------
Confidence            37899999 999999999999999999999765 58888888875432   22333    111  222            


Q ss_pred             eeeEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                            +-.+.+.++++.|++.      ..|+++++++.+++
T Consensus       116 ------~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I  151 (211)
T 2pn8_A          116 ------LLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGIL  151 (211)
T ss_dssp             ------EEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             ------EEECCchHHHHHcCCcccCCCcccceEEEECCCCEE
Confidence                  1124567899999995      69999999766554

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.27  E-value=2.6e-12  Score=75.95  Aligned_cols=51  Identities=18%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-----ccccccCCccccceE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-----GPLCKEYDIKGYPTF   60 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~   60 (116)
                      +++ ||++||++|+++.|.++++..      .+.++.+|.+.+     ..+++++++.++||+
T Consensus        22 vv~-f~a~~C~~C~~~~~~l~~~~~------~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~   77 (116)
T 2e7p_A           22 VVV-FSKTYCGYCNRVKQLLTQVGA------SYKVVELDELSDGSQLQSALAHWTGRGTVPNV   77 (116)
T ss_dssp             EEE-EECTTCHHHHHHHHHHHHHTC------CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             EEE-EECCCChhHHHHHHHHHHcCC------CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE
Confidence            445 999999999999999988643      244555554443     346666677777766

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.25  E-value=1.9e-11  Score=76.34  Aligned_cols=85  Identities=8%  Similarity=0.048  Sum_probs=62.7

Q ss_pred             CeEEEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+||+ +||++|....|.+.++.+++ .  .+.++.++.+....   .++++++..+|.                 
T Consensus        43 k~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~--~v~vv~is~d~~~~~~~~~~~~~~~~~~~-----------------  102 (163)
T 1psq_A           43 KKKVLSVVPSIDTGICSTQTRRFNEELAGL-D--NTVVLTVSMDLPFAQKRWCGAEGLDNAIM-----------------  102 (163)
T ss_dssp             SEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSCHHHHHHHHHHHTCTTSEE-----------------
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CcEEEEEECCCHHHHHHHHHhcCCCCcEE-----------------
Confidence            378999995 99999999999999999888 3  68888888875432   344555423331                 


Q ss_pred             Eecc-CccchhhhcCCC----C--CCEEEEecCCccc
Q psy3452          77 IDCT-EHGPLCKEYDIK----G--YPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~-~~~~~~~~~~v~----~--~Pt~~~~~~g~~~  106 (116)
                       -.+ .+.++.+.|++.    +  .|+++++++.+++
T Consensus       103 -l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i  138 (163)
T 1psq_A          103 -LSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTI  138 (163)
T ss_dssp             -EECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBE
T ss_pred             -ecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeE
Confidence             114 567899999987    3  3999999766554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.25  E-value=1.3e-11  Score=89.92  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +.++.||++||++|+.+.|.+++++..++   ++.+.++|.+.++++++++++.++||+++ ++.
T Consensus       119 ~~i~~f~a~~C~~C~~~~~~l~~~a~~~~---~v~~~~vd~~~~~~~~~~~~i~svPt~~i-~g~  179 (521)
T 1hyu_A          119 FEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV-NGK  179 (521)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE-TTE
T ss_pred             cceEEEECCCCcCcHHHHHHHHHHHhHcC---ceEEEEEechhhHHHHHHhCCCccCEEEE-CCE
Confidence            46888999999999999999999998875   69999999999999999999999999987 554

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.25  E-value=4e-12  Score=79.38  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|+||++||++|+..+|.+.++.+++++. .+.++.++++
T Consensus        33 k~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d   74 (170)
T 2p5q_A           33 KVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCN   74 (170)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECC
Confidence            47899999999999999999999999999874 4888888876

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.24  E-value=3.1e-12  Score=74.36  Aligned_cols=54  Identities=26%  Similarity=0.452  Sum_probs=44.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--CcccccccCCccccceEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~   61 (116)
                      ++.++.|+++||++|+.+.+.++++++      .+.+..+|++  ++++++++++ ..+|+++
T Consensus        16 ~~~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~~~el~~~~g-~~vP~l~   71 (100)
T 1wjk_A           16 LPVLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPENSTWYERYK-FDIPVFH   71 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSSTTHHHHHHSS-SSCSEEE
T ss_pred             CCEEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcchHHHHHHHC-CCCCEEE
Confidence            467889999999999999999886532      4788899988  6778888889 8899764

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.24  E-value=2.6e-11  Score=76.40  Aligned_cols=83  Identities=13%  Similarity=0.014  Sum_probs=61.3

Q ss_pred             eEEEEEE-cCCCHHHHh-hhHHHHHHHHHhccCcce-EEEEEeCCCcc---cccccCCcc-ccceEEEcCceeeeceeeE
Q psy3452           2 FYSILFY-SPGCGYCKK-AKPEYVKAAEVLKDNHKV-ALAAIDCTEHG---PLCKEYDIK-GYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~-~~~~~~~~~~~~~~~~~~-~~~~vd~~~~~---~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~   74 (116)
                      +++|.|| ++||++|.. .+|.+.++.+++++. .+ .++.++.+...   ..++++++. .+|.               
T Consensus        33 ~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~---------------   96 (167)
T 2wfc_A           33 KGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK-GVDIIACMAVNDSFVMDAWGKAHGADDKVQM---------------   96 (167)
T ss_dssp             EEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT-TCCEEEEEESSCHHHHHHHHHHTTCTTTSEE---------------
T ss_pred             cEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHHhcCCCcceEE---------------
Confidence            5777776 999999999 999999999998765 48 88888877543   345566553 2341               


Q ss_pred             EEEeccCccchhhhcCCCCC-----------CEEEEecCC
Q psy3452          75 AAIDCTEHGPLCKEYDIKGY-----------PTFQYFHYF  103 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~~~-----------Pt~~~~~~g  103 (116)
                         -.+.+.++++.|++...           |+.+++++|
T Consensus        97 ---l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI~~G  133 (167)
T 2wfc_A           97 ---LADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDG  133 (167)
T ss_dssp             ---EECTTSHHHHHTTCEECCHHHHSSCEECCEEEEEETT
T ss_pred             ---EECCCCcHHHHcCCccccccccCcccceEEEEEEeCC
Confidence               12567889999998754           998888544

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.24  E-value=3.1e-11  Score=75.59  Aligned_cols=85  Identities=13%  Similarity=0.137  Sum_probs=61.7

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+|| ++||++|...+|.+.++.+++ .  .+.++.++.+....   .++++++..+|                 .
T Consensus        44 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~-----------------~  103 (165)
T 1q98_A           44 KRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S--NTIVLCISADLPFAQARFCGAEGIENAK-----------------T  103 (165)
T ss_dssp             SEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T--TEEEEEEESSCHHHHTTCTTTTTCTTEE-----------------E
T ss_pred             CeEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CCEEEEEeCCCHHHHHHHHHHcCCCceE-----------------E
Confidence            36899999 899999999999999999998 3  68888888775432   33444432222                 1


Q ss_pred             EeccC-ccchhhhcCCCC---------CCEEEEecCCccc
Q psy3452          77 IDCTE-HGPLCKEYDIKG---------YPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~-~~~~~~~~~v~~---------~Pt~~~~~~g~~~  106 (116)
                      + .+. +.++++.|++..         .|+.+++++++++
T Consensus       104 l-~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i  142 (165)
T 1q98_A          104 V-STFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNV  142 (165)
T ss_dssp             E-ECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBE
T ss_pred             e-eccccchHHHHhCceecccccCCccceeEEEEcCCCEE
Confidence            1 133 678999999863         4999999765554

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.23  E-value=2.8e-12  Score=80.22  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=38.5

Q ss_pred             CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhccCc--ceEEEEEeCCCc
Q psy3452           1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLKDNH--KVALAAIDCTEH   45 (116)
Q Consensus         1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~   45 (116)
                      ++++|+||++||++ |+...|.+.++.+++++.+  .+.++.++++.+
T Consensus        36 k~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~   83 (172)
T 2k6v_A           36 KVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPE   83 (172)
T ss_dssp             SEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTT
T ss_pred             CEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCC
Confidence            47899999999997 9999999999999998531  588889988753

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.22  E-value=1.9e-11  Score=75.94  Aligned_cols=82  Identities=10%  Similarity=0.101  Sum_probs=59.0

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +++|+|| ++||++|....|.+.++.+++++.+  .++.++.+...   +.++++++. +|                  +
T Consensus        37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~~-~~------------------~   95 (159)
T 2a4v_A           37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSADSVTSQKKFQSKQNLP-YH------------------L   95 (159)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESCCHHHHHHHHHHHTCS-SE------------------E
T ss_pred             eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCCCHHHHHHHHHHhCCC-ce------------------E
Confidence            5788887 9999999999999999999998764  77777776433   233444432 22                  1


Q ss_pred             eccCccchhhhcCCCCCC------EEEEecCCc
Q psy3452          78 DCTEHGPLCKEYDIKGYP------TFQYFHYFN  104 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~P------t~~~~~~g~  104 (116)
                      -.+.+.++.+.|++...|      +.+++++|.
T Consensus        96 l~D~~~~~~~~~gv~~~p~~g~~~~~~li~~G~  128 (159)
T 2a4v_A           96 LSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGK  128 (159)
T ss_dssp             EECTTCHHHHHHTCBSSSSSCBCCEEEEEETTE
T ss_pred             EECCccHHHHHhCCcccccCCccceEEEEcCCE
Confidence            124577899999999998      555555553

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.22  E-value=5.7e-11  Score=74.66  Aligned_cols=84  Identities=10%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.|| ++||++|....|.+.++.+++ .  ++.++.+..+...   +.++++++..+|.+                
T Consensus        48 k~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l----------------  108 (171)
T 2yzh_A           48 VVQVIITVPSLDTPVCETETKKFNEIMAGM-E--GVDVTVVSMDLPFAQKRFCESFNIQNVTVA----------------  108 (171)
T ss_dssp             SEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSCHHHHHHHHHHTTCCSSEEE----------------
T ss_pred             CeEEEEEECCCCCCchHHHHHHHHHHHHHc-C--CceEEEEeCCCHHHHHHHHHHcCCCCeEEe----------------
Confidence            36899999 899999999999999999888 3  6888888887543   23455555333311                


Q ss_pred             Eecc-CccchhhhcCCCC---------CCEEEEecCCccc
Q psy3452          77 IDCT-EHGPLCKEYDIKG---------YPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~-~~~~~~~~~~v~~---------~Pt~~~~~~g~~~  106 (116)
                        .+ .+.++ +.|++..         .|+++++++++++
T Consensus       109 --~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i  145 (171)
T 2yzh_A          109 --SDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKV  145 (171)
T ss_dssp             --ECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBE
T ss_pred             --ecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeE
Confidence              13 56678 8999862         6999999766554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.22  E-value=1.5e-11  Score=76.74  Aligned_cols=63  Identities=8%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCc--ccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEH--GPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++||+|+++||..|+.|....   .++.+.+++  ++.++++|.+..  ..+.++|++.++|+++|++.
T Consensus        43 K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~  110 (153)
T 2dlx_A           43 KWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDP  110 (153)
T ss_dssp             CEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECT
T ss_pred             CeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeC
Confidence            4799999999999999997665   556666654  688888888543  23445555555555555543

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.21  E-value=4.6e-11  Score=79.01  Aligned_cols=84  Identities=10%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             CeEEEEEE-cCCCHHHH-hhhHHHHHHHHHhccCcce-EEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeE
Q psy3452           1 MFYSILFY-SPGCGYCK-KAKPEYVKAAEVLKDNHKV-ALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~-~~~~~~~~~~~~~~~~~~~-~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      ++++|+|| ++||++|. ..+|.+.++.+++++. .+ .++.++.+...   ..++++++..+|.+              
T Consensus        34 k~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l--------------   98 (241)
T 1nm3_A           34 KTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVNDTFVMNAWKEDEKSENISFI--------------   98 (241)
T ss_dssp             SEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESSCHHHHHHHHHHTTCTTSEEE--------------
T ss_pred             CeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEcCCHHHHHHHHHhcCCCceEEE--------------
Confidence            36899999 99999999 9999999999998765 47 88888877532   34455565444422              


Q ss_pred             EEEeccCccchhhhcCCC-----------CCCEEEEecCC
Q psy3452          75 AAIDCTEHGPLCKEYDIK-----------GYPTFQYFHYF  103 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g  103 (116)
                          .+.+.++++.|++.           ..|+.+++++|
T Consensus        99 ----~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li~~G  134 (241)
T 1nm3_A           99 ----PDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVKNG  134 (241)
T ss_dssp             ----ECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEETT
T ss_pred             ----ECCCcHHHHHhCceeecccccCcccceeEEEEEECC
Confidence                25677899999986           45888888444

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.21  E-value=1.3e-11  Score=79.68  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=36.2

Q ss_pred             CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhccC--cceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLKDN--HKVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~   44 (116)
                      ++++|+||++||++ |...+|.+.++.+.+...  ..+.++.++.+.
T Consensus        42 k~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~   88 (200)
T 2b7k_A           42 KFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   88 (200)
T ss_dssp             SCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             CEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC
Confidence            47899999999997 999999999988877642  257788888774

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.21  E-value=1.6e-11  Score=78.42  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=63.5

Q ss_pred             CeEEEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccC-CccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEY-DIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~-~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++|.||+ +||++|...+|.+.++.+++++. .+.++.++.+...   +.++++ ++..+               .+.
T Consensus        31 k~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~---------------~fp   94 (186)
T 1n8j_A           31 RWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKI---------------KYA   94 (186)
T ss_dssp             SEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGC---------------CSE
T ss_pred             CeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHcCcccCC---------------cee
Confidence            378999995 99999999999999999999765 4888888877543   233344 11121               111


Q ss_pred             EEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                       +-.+.+.++++.|++.      ..|+++++++.+++
T Consensus        95 -~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i  130 (186)
T 1n8j_A           95 -MIGDPTGALTRNFDNMREDEGLADRATFVVDPQGII  130 (186)
T ss_dssp             -EEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             -EEECCchHHHHHhCCccCCCCceeeEEEEECCCCeE
Confidence             1224677899999997      37999999765554

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.21  E-value=3.9e-11  Score=77.60  Aligned_cols=87  Identities=10%  Similarity=0.084  Sum_probs=63.7

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.|| ++||++|....|.++++.+++ .  .+.++.+..+....   .++++++..+|                  
T Consensus        79 k~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~--~v~vv~Is~D~~~~~~~~~~~~~~~~f~------------------  137 (200)
T 3zrd_A           79 KRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E--NTVVLCISSDLPFAQSRFCGAEGLSNVI------------------  137 (200)
T ss_dssp             SEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T--TEEEEEEESSCHHHHTTCTTTTTCTTEE------------------
T ss_pred             CcEEEEEECCCCCchhHHHHHHHHHHHHHh-C--CCEEEEEECCCHHHHHHHHHHcCCCCce------------------
Confidence            36899999 789999999999999999999 3  58888888875433   33444443322                  


Q ss_pred             EeccC-ccchhhhcCCC---------CCCEEEEecCCcccCC
Q psy3452          77 IDCTE-HGPLCKEYDIK---------GYPTFQYFHYFNKQSP  108 (116)
Q Consensus        77 v~~~~-~~~~~~~~~v~---------~~Pt~~~~~~g~~~~~  108 (116)
                      +-.+. +.++.+.|++.         ..|+++++++.+++..
T Consensus       138 ~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~  179 (200)
T 3zrd_A          138 TLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIY  179 (200)
T ss_dssp             EEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEE
T ss_pred             EEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEE
Confidence            11244 78899999986         3699999976666533

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.20  E-value=3e-11  Score=77.33  Aligned_cols=83  Identities=8%  Similarity=0.040  Sum_probs=60.2

Q ss_pred             eEEEEEEcCCCHHHHh-hhHHHHHHHHHhccCcceE-EEEEeCCCc---ccccccCCcc-ccceEEEcCceeeeceeeEE
Q psy3452           2 FYSILFYSPGCGYCKK-AKPEYVKAAEVLKDNHKVA-LAAIDCTEH---GPLCKEYDIK-GYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~-~~~~~~~~~~~~~~~~~~~-~~~vd~~~~---~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++.||++||++|+. .+|.++++.+++++.+ +. ++.++.+..   ...++++++. .+|.+               
T Consensus        59 vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g-v~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l---------------  122 (184)
T 3uma_A           59 VVLFAVPGAFTPTCSLNHLPGYLENRDAILARG-VDDIAVVAVNDLHVMGAWATHSGGMGKIHFL---------------  122 (184)
T ss_dssp             EEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESSCHHHHHHHHHHHTCTTTSEEE---------------
T ss_pred             EEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCHHHHHHHHHHhCCCCceEEE---------------
Confidence            4566677999999999 7999999999998764 66 777777653   2345555554 34422               


Q ss_pred             EEeccCccchhhhcCCC-----------CCCEEEEecCC
Q psy3452          76 AIDCTEHGPLCKEYDIK-----------GYPTFQYFHYF  103 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g  103 (116)
                         .+.+.+++++|++.           ..|+.+++++|
T Consensus       123 ---~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiIddG  158 (184)
T 3uma_A          123 ---SDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVEDG  158 (184)
T ss_dssp             ---ECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEETT
T ss_pred             ---EcCchHHHHHcCCceeccccCCcccceeEEEEECCC
Confidence               25678899999985           35888888755

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.20  E-value=4.4e-11  Score=74.94  Aligned_cols=44  Identities=14%  Similarity=0.263  Sum_probs=38.3

Q ss_pred             CeEEEEEEcCCCH-HHHhhhHHHHHHHHHhccCc-ceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCG-YCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~-~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~   44 (116)
                      ++++|+||++||+ +|....|.+.++.+.+++.+ ++.++.++++.
T Consensus        34 k~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~   79 (174)
T 1xzo_A           34 EVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP   79 (174)
T ss_dssp             CCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC
Confidence            4689999999999 99999999999999998753 48888888873

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.20  E-value=3.8e-11  Score=75.04  Aligned_cols=86  Identities=13%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             CeEEEEEE-cCCCHHHH-hhhHHHHHHHHHhccCcceE-EEEEeCCCcc---cccccCCcc-ccceEEEcCceeeeceee
Q psy3452           1 MFYSILFY-SPGCGYCK-KAKPEYVKAAEVLKDNHKVA-LAAIDCTEHG---PLCKEYDIK-GYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~-~~~~~~~~~~~~~~~~~~~~-~~~vd~~~~~---~~~~~~~v~-~~Pt~~~~~~~v~f~~~~   73 (116)
                      ++++|.|| ++||++|. ...|.+.++.+++++. .+. ++.++.+...   +.++++++. .+|               
T Consensus        36 k~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~---------------   99 (162)
T 1tp9_A           36 KKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVNDPFVMKAWAKSYPENKHVK---------------   99 (162)
T ss_dssp             SEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESSCHHHHHHHHHTCTTCSSEE---------------
T ss_pred             CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHhcCCCCCeE---------------
Confidence            36899999 89999999 8999999999999765 466 7777766432   344555553 233               


Q ss_pred             EEEEeccCccchhhhcCCC-----------CCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIK-----------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g~~~  106 (116)
                         +-.+.+.++++.|++.           ..|+.++++ .+++
T Consensus       100 ---~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i  139 (162)
T 1tp9_A          100 ---FLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKV  139 (162)
T ss_dssp             ---EEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEE
T ss_pred             ---EEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEE
Confidence               2225678899999986           279999998 5444

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.19  E-value=2.1e-11  Score=76.39  Aligned_cols=86  Identities=13%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.|| ++||++|....|.++++.++ .   .+.++.++.+....   .++++++..+|.+                
T Consensus        47 k~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~---~~~vv~is~d~~~~~~~~~~~~~~~~~~~l----------------  106 (166)
T 3p7x_A           47 KKKLISVVPSIDTGVCDQQTRKFNSDASK-E---EGIVLTISADLPFAQKRWCASAGLDNVITL----------------  106 (166)
T ss_dssp             SCEEEEECSCTTSHHHHHHHHHHHHHSCT-T---TSEEEEEESSCHHHHHHHHHHHTCSSCEEE----------------
T ss_pred             CcEEEEEECCCCCCccHHHHHHHHHHhhc-C---CCEEEEEECCCHHHHHHHHHHcCCCceEEc----------------
Confidence            36889999 88999999999999998777 2   57888888775433   3445555333311                


Q ss_pred             EeccC-ccchhhhcCCCC------CCEEEEecCCcccCC
Q psy3452          77 IDCTE-HGPLCKEYDIKG------YPTFQYFHYFNKQSP  108 (116)
Q Consensus        77 v~~~~-~~~~~~~~~v~~------~Pt~~~~~~g~~~~~  108 (116)
                        .+. +.++.+.|++..      .|+++++++.+++..
T Consensus       107 --~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~  143 (166)
T 3p7x_A          107 --SDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVY  143 (166)
T ss_dssp             --ECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEE
T ss_pred             --cCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEE
Confidence              244 668999999986      899999976666533

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.18  E-value=3.1e-11  Score=76.63  Aligned_cols=85  Identities=11%  Similarity=0.207  Sum_probs=63.0

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +++|.|| ++||+.|...+|.+.++.+++++. .+.++.+..+...   ..++++++. +|.                  
T Consensus        53 ~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~-~~~vv~Vs~D~~~~~~~~~~~~~~~-f~~------------------  112 (179)
T 3ixr_A           53 WLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI-NATVLGVSRDSVKSHDSFCAKQGFT-FPL------------------  112 (179)
T ss_dssp             EEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESCCHHHHHHHHHHHTCC-SCE------------------
T ss_pred             CEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCc-eEE------------------
Confidence            6788898 999999999999999999999876 4778888777543   233444432 231                  


Q ss_pred             eccCccchhhhcCCCC------------CCEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIKG------------YPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~------------~Pt~~~~~~g~~~  106 (116)
                      -.+.+.++++.|++..            .|+++++++.+++
T Consensus       113 l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I  153 (179)
T 3ixr_A          113 VSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRI  153 (179)
T ss_dssp             EECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBE
T ss_pred             EECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEE
Confidence            1246778899999864            6999999766555

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.16  E-value=4e-11  Score=79.68  Aligned_cols=87  Identities=8%  Similarity=0.078  Sum_probs=64.6

Q ss_pred             CeEEEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----Cc--cccceEEEcCceeeec
Q psy3452           1 MFYSILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DI--KGYPTFHHLALTIMII   70 (116)
Q Consensus         1 ~~v~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v--~~~Pt~~~~~~~v~f~   70 (116)
                      .+++|.||+ +||++|...+|.+.++.+++++. .+.++.+.++....   .++++    ++  -.+|            
T Consensus        78 k~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~-gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp------------  144 (240)
T 3qpm_A           78 KYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI-NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIP------------  144 (240)
T ss_dssp             SEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSC------------
T ss_pred             CEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCcee------------
Confidence            378999999 99999999999999999999865 48888888776543   22222    11  1222            


Q ss_pred             eeeEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                            +-.+.+.++++.|++.      ..|+++++++.+++
T Consensus       145 ------~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I  180 (240)
T 3qpm_A          145 ------LLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVL  180 (240)
T ss_dssp             ------EEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             ------EEeCchHHHHHHhCCccccCCCccceEEEEcCCCeE
Confidence                  1225568899999998      78999999766655

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.16  E-value=3.3e-12  Score=79.65  Aligned_cols=86  Identities=10%  Similarity=0.147  Sum_probs=57.2

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|.|| ++||++|...+|.+.++.+++++. .+.++.++.+...   +.++++++. +|                  
T Consensus        31 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~-~~~~v~vs~d~~~~~~~~~~~~~~~-~p------------------   90 (157)
T 4g2e_A           31 KVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV-NAVVLGISVDPPFSNKAFKEHNKLN-FT------------------   90 (157)
T ss_dssp             SCEEEEECSCTTCCC------CCSCGGGGGGGC-SSEEEEEESSCHHHHHHHHHHTTCC-SE------------------
T ss_pred             CeEEEEecCCCCCCccccchhhccccccccccc-CceEeeecccchhHHHHHHHHcCCc-EE------------------
Confidence            36889998 999999999999999998888776 4777778776543   334455542 22                  


Q ss_pred             EeccCccchhhhcCCC-----------CCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIK-----------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.+++++|+|.           ..|+++++++.++|
T Consensus        91 ~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I  131 (157)
T 4g2e_A           91 ILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKV  131 (157)
T ss_dssp             EEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBE
T ss_pred             EEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEE
Confidence            1236678899999884           46889999766654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.15  E-value=3.2e-11  Score=76.24  Aligned_cols=83  Identities=12%  Similarity=0.148  Sum_probs=58.6

Q ss_pred             eEEEEEEcCCCHHHHhh-hHHHHHHHHHhccCcceE-EEEEeCCCc---ccccccCCcc-ccceEEEcCceeeeceeeEE
Q psy3452           2 FYSILFYSPGCGYCKKA-KPEYVKAAEVLKDNHKVA-LAAIDCTEH---GPLCKEYDIK-GYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~-~~~vd~~~~---~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      +++++||++||++|+.. +|.+.++.+++++. .+. ++.++.+..   ...++++++. .+|.+               
T Consensus        46 vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~-g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l---------------  109 (171)
T 2pwj_A           46 VVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK-GVDSVICVAINDPYTVNAWAEKIQAKDAIEFY---------------  109 (171)
T ss_dssp             EEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT-TCSEEEEEESSCHHHHHHHHHHTTCTTTSEEE---------------
T ss_pred             EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHHHhCCCCceEEE---------------
Confidence            56788999999999998 99999999998765 366 777777643   3345566653 44422               


Q ss_pred             EEeccCccchhhhcCCCC-----------CCEEEEecCC
Q psy3452          76 AIDCTEHGPLCKEYDIKG-----------YPTFQYFHYF  103 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~~-----------~Pt~~~~~~g  103 (116)
                         .+.+.++++.|++..           .|+.+++.+|
T Consensus       110 ---~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~~G  145 (171)
T 2pwj_A          110 ---GDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVVDG  145 (171)
T ss_dssp             ---ECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEETT
T ss_pred             ---ECCccHHHHHhCCccccccccCCcccceeEEEEECC
Confidence               256778888888752           4555666554

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.13  E-value=1.2e-10  Score=73.92  Aligned_cols=84  Identities=17%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             EEEEEEcCCCHHHH-hhhHHHHHHHHHhccCcceEEEE-EeCCCc---ccccccCCcc-ccceEEEcCceeeeceeeEEE
Q psy3452           3 YSILFYSPGCGYCK-KAKPEYVKAAEVLKDNHKVALAA-IDCTEH---GPLCKEYDIK-GYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         3 v~v~F~a~wC~~C~-~~~~~~~~~~~~~~~~~~~~~~~-vd~~~~---~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      +++.||++||++|. +.+|.+.++.+++++.+ +.++. +..+..   .+.++++++. .+|                  
T Consensus        47 vL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g-v~vv~~iS~D~~~~~~~f~~~~~~~~~fp------------------  107 (173)
T 3mng_A           47 VLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG-VQVVACLSVNDAFVTGEWGRAHKAEGKVR------------------  107 (173)
T ss_dssp             EEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESSCHHHHHHHHHHTTCTTTCE------------------
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEEcCCCHHHHHHHHHHhCCCCceE------------------
Confidence            45556699999999 58999999999998764 55554 666543   3455566654 344                  


Q ss_pred             EeccCccchhhhcCCC-------------CCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIK-------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~-------------~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.++++.|++.             ..|+.++++ .++|
T Consensus       108 ~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I  149 (173)
T 3mng_A          108 LLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIV  149 (173)
T ss_dssp             EEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEE
T ss_pred             EEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEE
Confidence            2225678899999986             359999999 4444

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.05  E-value=1.2e-10  Score=78.05  Aligned_cols=87  Identities=9%  Similarity=0.077  Sum_probs=64.1

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----Cc--cccceEEEcCceeeec
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DI--KGYPTFHHLALTIMII   70 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v--~~~Pt~~~~~~~v~f~   70 (116)
                      .+++|+|| ++||+.|...+|.+.++.+++++. .+.++.|.++....   .++++    ++  -.+|            
T Consensus        92 K~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~-gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp------------  158 (254)
T 3tjj_A           92 KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIP------------  158 (254)
T ss_dssp             SEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSC------------
T ss_pred             CeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccc------------
Confidence            36899999 999999999999999999999865 48888888876542   22222    11  1222            


Q ss_pred             eeeEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                            +-.+.+.++++.|++.      ..|+++++++.+++
T Consensus       159 ------~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I  194 (254)
T 3tjj_A          159 ------LLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGIL  194 (254)
T ss_dssp             ------EEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBE
T ss_pred             ------eeeCcHHHHHHHcCCccccCCCccceEEEECCCCeE
Confidence                  1225567899999996      58999999766655

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.05  E-value=2.8e-10  Score=71.64  Aligned_cols=94  Identities=12%  Similarity=0.030  Sum_probs=62.1

Q ss_pred             CeEEEEEEcCCCH-HHHhhhHHHHHHHHHhccCc-ceEEEEEeCCC--c----ccccccCCccccceEEEcCceeeecee
Q psy3452           1 MFYSILFYSPGCG-YCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE--H----GPLCKEYDIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~a~wC~-~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~--~----~~~~~~~~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      ++++|+||++||+ .|....+.++++.+++...+ ++.++.+.++.  .    .+.++++++.. |.            .
T Consensus        29 k~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~-~~------------w   95 (170)
T 3me7_A           29 KPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDG-KG------------W   95 (170)
T ss_dssp             SCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCS-SS------------E
T ss_pred             CEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCC-CC------------e
Confidence            4689999999997 69999999999999996422 57777777663  2    13344555443 21            1


Q ss_pred             eEEEE-eccCccchhhhcC---------CCCCCEEEEecCCcccC
Q psy3452          73 ALAAI-DCTEHGPLCKEYD---------IKGYPTFQYFHYFNKQS  107 (116)
Q Consensus        73 ~~~~v-~~~~~~~~~~~~~---------v~~~Pt~~~~~~g~~~~  107 (116)
                      .+... +.++..++++.|+         +...|+++++++.+++.
T Consensus        96 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~  140 (170)
T 3me7_A           96 KVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIK  140 (170)
T ss_dssp             EEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEE
T ss_pred             EEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEE
Confidence            12111 2234566777766         45668999997666653

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.05  E-value=6.1e-12  Score=79.04  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++++.|| ++||++|...+|.+.++.+++++. .+.++.++.+...   ..++++++. +|                  +
T Consensus        35 ~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~-fp------------------~   94 (164)
T 4gqc_A           35 PAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLA-FN------------------L   94 (164)
T ss_dssp             CEEEEECSCTTCCEECSSCEESCCCGGGGGGS-SSEEEEEESSCHHHHHHHHHHTTCC-SE------------------E
T ss_pred             EEEEEEeCCCCCCCcccchhhhhhhHHHhhcc-CceEEEecCCCHHHHHHHHHhcCcc-cc------------------e
Confidence            5777887 999999999999999999998776 4777788776543   334454432 22                  2


Q ss_pred             eccCccchhhhcCCC----------CCCEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIK----------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~----------~~Pt~~~~~~g~~~  106 (116)
                      -.+.+.++++.|||.          ..|+++++++.++|
T Consensus        95 l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I  133 (164)
T 4gqc_A           95 LSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTV  133 (164)
T ss_dssp             EECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBE
T ss_pred             eecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEE
Confidence            236678899999984          47999999766665

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.05  E-value=2.7e-10  Score=72.12  Aligned_cols=43  Identities=7%  Similarity=0.168  Sum_probs=37.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      ++++|+||++||++|+..+|.+.++.+++++. .+.++.++++.
T Consensus        39 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~   81 (180)
T 3kij_A           39 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPS-HFSVLAFPCNQ   81 (180)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT-SEEEEEEECCC
T ss_pred             CEEEEEEEecCCCCcHHHHHHHHHHHHHhccC-CeEEEEEECCc
Confidence            47999999999999999999999999999875 38888887653

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.01  E-value=9.9e-10  Score=71.89  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|+|||+||++|+ .+|.++++.+++++. .+.++.+.++
T Consensus        57 Kvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~-g~~Vlgvs~d   97 (215)
T 2i3y_A           57 KHILFVNVATYCGLTA-QYPELNALQEELKPY-GLVVLGFPCN   97 (215)
T ss_dssp             SEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CEEEEEEeCCCCCChH-hHHHHHHHHHHhccC-CeEEEEEEcc
Confidence            4799999999999999 899999999999875 4888888865

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.01  E-value=3.9e-10  Score=75.33  Aligned_cols=85  Identities=8%  Similarity=0.035  Sum_probs=62.3

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc-------cccCCc-cccceEEEcCceeeeceeeE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL-------CKEYDI-KGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-------~~~~~v-~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      +++.||++||+.|....+.+.++.+++++. ++.++.++++.....       .+..+. -.+|                
T Consensus        37 VL~~fpa~~CpvC~tEl~~l~~l~~ef~~~-gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fP----------------   99 (249)
T 3a2v_A           37 VLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFP----------------   99 (249)
T ss_dssp             EEECCSCTTCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSC----------------
T ss_pred             EEEEEcCCCCcChHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHHHHHHHHHHHhcCCCCcee----------------
Confidence            566889999999999999999999999865 588899988764321       111111 1122                


Q ss_pred             EEEeccCccchhhhcCCC-------CCCEEEEecCCccc
Q psy3452          75 AAIDCTEHGPLCKEYDIK-------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~-------~~Pt~~~~~~g~~~  106 (116)
                        +-.+.+.++++.|++.       ..|+++++++.+++
T Consensus       100 --il~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I  136 (249)
T 3a2v_A          100 --IIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVI  136 (249)
T ss_dssp             --EEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBE
T ss_pred             --EEECCchHHHHHhCCccccCCCcccceEEEECCCCeE
Confidence              2235678899999997       89999999765554

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.00  E-value=7.4e-10  Score=72.83  Aligned_cols=85  Identities=14%  Similarity=0.014  Sum_probs=61.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---ccc----------CCccccceEEEcCceee
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKE----------YDIKGYPTFHHLALTIM   68 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~----------~~v~~~Pt~~~~~~~v~   68 (116)
                      ++++.||++||+.|....+.+.++.+++++. ++.++.++++.....   .++          .++ .+|          
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~-~fp----------  101 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKL-PFP----------  101 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCC-SSC----------
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCc-Ccc----------
Confidence            3566679999999999999999999999765 588888888764322   121          222 223          


Q ss_pred             eceeeEEEEeccCccchhhhcCCC------------CCCEEEEecCCccc
Q psy3452          69 IIRLALAAIDCTEHGPLCKEYDIK------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        69 f~~~~~~~v~~~~~~~~~~~~~v~------------~~Pt~~~~~~g~~~  106 (116)
                              +-.+.+.++++.|++.            ..|+++++++.+++
T Consensus       102 --------il~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I  143 (224)
T 1prx_A          102 --------IIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKL  143 (224)
T ss_dssp             --------EEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBE
T ss_pred             --------eeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEE
Confidence                    1125677899999874            37999999766655

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.97  E-value=7.5e-10  Score=61.27  Aligned_cols=50  Identities=10%  Similarity=0.211  Sum_probs=37.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc---cCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK---EYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~   61 (116)
                      ++.|+++||++|+++.+.+++.        .+.+..+|+++++++.+   ++++.++|++.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~   55 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI   55 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE
Confidence            4669999999999999988862        36677788887654433   47777888773

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.96  E-value=7.4e-10  Score=73.32  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccc------cC--CccccceEEEcCceeee
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCK------EY--DIKGYPTFHHLALTIMI   69 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~------~~--~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++.|| ++||+.|...++.+.++.+++++. ++.++.++++....   .++      .+  ++ .+|           
T Consensus        31 ~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~-~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~-~fp-----------   97 (233)
T 2v2g_A           31 WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR-GVKLIALSCDNVADHKEWSEDVKCLSGVKGDM-PYP-----------   97 (233)
T ss_dssp             EEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHTCCSSC-SSC-----------
T ss_pred             eEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccCC-ceE-----------
Confidence            6888998 999999999999999999999765 58888888876432   222      22  22 223           


Q ss_pred             ceeeEEEEeccCccchhhhcCCC------------CCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIK------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~------------~~Pt~~~~~~g~~~  106 (116)
                             +-.+.+.++++.|++.            ..|+++++++.+++
T Consensus        98 -------il~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I  139 (233)
T 2v2g_A           98 -------IIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKL  139 (233)
T ss_dssp             -------EEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBE
T ss_pred             -------EEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEE
Confidence                   1225677899999985            57999999766655

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.89  E-value=1.9e-09  Score=67.81  Aligned_cols=30  Identities=20%  Similarity=0.473  Sum_probs=27.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhcc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKD   31 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~   31 (116)
                      ++++.||.+|||+|+++.|.++++.+++++
T Consensus        24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~   53 (175)
T 3gyk_A           24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPN   53 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999888653

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.89  E-value=1.1e-09  Score=71.82  Aligned_cols=85  Identities=15%  Similarity=0.122  Sum_probs=60.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cc-------cCCccccceEEEcCceeeece
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CK-------EYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~-------~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      ++++.||++||+.|....+.+.++.+++++. ++.++.++++.....   .+       .+++ .+|             
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~-~fp-------------   98 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKW-EIP-------------   98 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCC-CCC-------------
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHHHHHhcCCCC-cce-------------
Confidence            3455568999999999999999999999765 588888888754321   11       2222 223             


Q ss_pred             eeEEEEeccCccchhhhcCCC------------CCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIK------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~------------~~Pt~~~~~~g~~~  106 (116)
                           +-.+.+.++++.|++.            ..|+++++++.+++
T Consensus        99 -----il~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I  140 (220)
T 1xcc_A           99 -----IVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKI  140 (220)
T ss_dssp             -----EEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBE
T ss_pred             -----eEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEE
Confidence                 1225677889999983            37999999766665

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.87  E-value=2.9e-09  Score=57.86  Aligned_cols=50  Identities=18%  Similarity=0.299  Sum_probs=36.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc---cCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK---EYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~   61 (116)
                      ++.|+++||++|++..+.+++.        .+.+..+|.+.++...+   ++++.++|+++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~   55 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVE   55 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEE
Confidence            4669999999999999988863        35667777777654443   56667777665

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.86  E-value=8.7e-10  Score=71.99  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=23.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAE   27 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~   27 (116)
                      ++++.||++||++|+++.|.++++.+
T Consensus        88 ~~vv~F~d~~Cp~C~~~~~~l~~l~~  113 (216)
T 1eej_A           88 HVITVFTDITCGYCHKLHEQMADYNA  113 (216)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHh
Confidence            68999999999999999999998865

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.85  E-value=2.4e-09  Score=62.08  Aligned_cols=52  Identities=19%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-------ccccccCCccccceE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-------GPLCKEYDIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~   60 (116)
                      ++.|+++||++|+++.+.++++...++   .  +..+|++.+       +.+.+.+++.++|++
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~---~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i   72 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEG---L--LEFVDITATSDTNEIQDYLQQLTGARTVPRV   72 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT---S--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCC---c--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE
Confidence            577999999999999999987544332   2  344455443       134555666666665

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.81  E-value=2.4e-09  Score=63.31  Aligned_cols=54  Identities=17%  Similarity=0.160  Sum_probs=35.8

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-------cccccCCccccceEE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-------PLCKEYDIKGYPTFH   61 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~v~~~Pt~~   61 (116)
                      .++.|+++||++|+++.+.+++..... +  .  +..+|++.++       .+.+.+++.++|+++
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~--~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~   80 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKR-G--A--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF   80 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCT-T--S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCc-C--c--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE
Confidence            367799999999999999887542221 0  1  5666666553       455566666666653

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.80  E-value=3.6e-08  Score=61.99  Aligned_cols=44  Identities=14%  Similarity=0.307  Sum_probs=35.9

Q ss_pred             CeEEEEEEcCCCH-HHHhhhHHHHHHHHHhccCc-ceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCG-YCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~-~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~   44 (116)
                      ++++|+||.+||+ .|...++.+.++.+.+++.+ ++.++.+.++.
T Consensus        33 k~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp   78 (170)
T 4hde_A           33 KVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDP   78 (170)
T ss_dssp             SCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCc
Confidence            4789999999996 79999999999888886544 67777777663

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.79  E-value=2e-09  Score=69.51  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +++|+||+.||+||+++.|.+   +++.+.+++  .+.+.+++.+.+
T Consensus       115 ~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~--~v~~~~~~v~~~  159 (197)
T 1un2_A          115 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFM  159 (197)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSS
T ss_pred             CEEEEEECCCChhHHHhCcccccHHHHHHHCCC--CCEEEEeccCcC
Confidence            579999999999999999999   999999987  688999988765

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.75  E-value=1.4e-08  Score=66.03  Aligned_cols=41  Identities=12%  Similarity=0.092  Sum_probs=35.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++|+|||+||++| ..+|.++++.+++++. .+.++.+.++
T Consensus        39 Kvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d   79 (207)
T 2r37_A           39 KYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCN   79 (207)
T ss_dssp             SEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECc
Confidence            479999999999999 6899999999999875 4888888765

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.72  E-value=4.9e-09  Score=59.09  Aligned_cols=52  Identities=27%  Similarity=0.481  Sum_probs=35.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--CcccccccC-CccccceE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEY-DIKGYPTF   60 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~-~v~~~Pt~   60 (116)
                      |.-++.|+++||++|+++.+.+++.        .+.+..+|++  ..+++.+.+ ++..+|++
T Consensus         5 m~~v~~y~~~~C~~C~~~~~~L~~~--------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l   59 (89)
T 2klx_A            5 MKEIILYTRPNCPYCKRARDLLDKK--------GVKYTDIDASTSLRQEMVQRANGRNTFPQI   59 (89)
T ss_dssp             CCCEEEESCSCCTTTHHHHHHHHHH--------TCCEEEECSCHHHHHHHHHHHHSSCCSCEE
T ss_pred             cceEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCHHHHHHHHHHhCCCCCcCEE
Confidence            4457789999999999999988864        2455566665  333444555 55666655

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.69  E-value=2.3e-08  Score=65.75  Aligned_cols=81  Identities=11%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             eEEEEEEcCC-CHHHH-----hhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeecee
Q psy3452           2 FYSILFYSPG-CGYCK-----KAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         2 ~v~v~F~a~w-C~~C~-----~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      +++|.||++| |+.|.     ..++.+.+.   +.   .+.++.|+.+...   ..++++++..+|              
T Consensus        50 ~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~---gv~VvgIS~Ds~~~~~~f~~~~gl~~fp--------------  109 (224)
T 3keb_A           50 PKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WP---HLKLIVITVDSPSSLARARHEHGLPNIA--------------  109 (224)
T ss_dssp             CEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CT---TSEEEEEESSCHHHHHHHHHHHCCTTCE--------------
T ss_pred             cEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cC---CCEEEEEECCCHHHHHHHHHHcCCCCce--------------
Confidence            6899999988 99999     777777665   42   5778888776532   344555554333              


Q ss_pred             eEEEEeccC-ccchhhhcCCCC---------CCEEEEecCCccc
Q psy3452          73 ALAAIDCTE-HGPLCKEYDIKG---------YPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~-~~~~~~~~~v~~---------~Pt~~~~~~g~~~  106 (116)
                          +-.+. +.++++.|++..         .|+.+++++.++|
T Consensus       110 ----lLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I  149 (224)
T 3keb_A          110 ----LLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVV  149 (224)
T ss_dssp             ----EEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBE
T ss_pred             ----EEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEE
Confidence                12244 588999999875         7999999766554

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2e-08  Score=60.66  Aligned_cols=50  Identities=20%  Similarity=0.384  Sum_probs=36.4

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---c----cccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---G----PLCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~----~~~~~~~v~~~Pt~~   61 (116)
                      ++.|+++||++|+++.+.++++.        +.+..+|++.+   +    .+++.+++..+|+++
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~   85 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF   85 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE
Confidence            34499999999999999998752        34455666554   3    266778888888874

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.67  E-value=2e-08  Score=61.95  Aligned_cols=50  Identities=20%  Similarity=0.384  Sum_probs=34.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---c----cccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---G----PLCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~----~~~~~~~v~~~Pt~~   61 (116)
                      ++.|+++||++|+++.+.++++.        +.+..+|++.+   +    .+++.+++..+|+++
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~~--------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if  107 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF  107 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE
Confidence            34499999999999999998752        33444555543   2    256677778888774

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.65  E-value=1.2e-08  Score=60.72  Aligned_cols=52  Identities=13%  Similarity=0.250  Sum_probs=34.4

Q ss_pred             EEEEEcCCCHHHHhh-hHHHHHHHHHhccCcceEEEEEeCCCcc-------cccccCCccccceE
Q psy3452           4 SILFYSPGCGYCKKA-KPEYVKAAEVLKDNHKVALAAIDCTEHG-------PLCKEYDIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~v~~~Pt~   60 (116)
                      ++.|+++||++|+++ .+.+++...   .  .+.+..+|++.++       ++.+.+++.++|++
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~---~--~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v   86 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV---P--RSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI   86 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC---C--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC---C--CCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE
Confidence            566999999999998 777765331   1  3566666666553       34555666666655

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.65  E-value=2.5e-08  Score=64.86  Aligned_cols=26  Identities=15%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAE   27 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~   27 (116)
                      ++++.|+.+||++|+++.|.++++.+
T Consensus        88 ~~vv~F~d~~Cp~C~~~~~~l~~~~~  113 (211)
T 1t3b_A           88 HVVTVFMDITCHYCHLLHQQLKEYND  113 (211)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHHHHHh
Confidence            57899999999999999999998654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.64  E-value=5.1e-08  Score=62.13  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=34.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++.||.+||++|+.+.|.+.++.+.+++  .+.+......
T Consensus        27 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~   66 (192)
T 3h93_A           27 IEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPAL   66 (192)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehh
Confidence            589999999999999999999999999887  5777666553

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.62  E-value=1.2e-07  Score=60.13  Aligned_cols=83  Identities=10%  Similarity=0.092  Sum_probs=59.9

Q ss_pred             eEEEEEEcCCCHHHHh-hhHHHHHHHHHhccCcce-EEEEEeCCCc---ccccccCCcc-ccceEEEcCceeeeceeeEE
Q psy3452           2 FYSILFYSPGCGYCKK-AKPEYVKAAEVLKDNHKV-ALAAIDCTEH---GPLCKEYDIK-GYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~-~~~~~~~~~~~~~~~~~~-~~~~vd~~~~---~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      +|++.||+.||+.|.. .+|.+.+..++++..+ + .++.+..+..   ...+++.++. .+|.                
T Consensus        50 vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g-~d~VigIS~D~~~~~~~f~~~~~l~~~f~l----------------  112 (176)
T 4f82_A           50 VVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG-IDEIWCVSVNDAFVMGAWGRDLHTAGKVRM----------------  112 (176)
T ss_dssp             EEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCEEEEEESSCHHHHHHHHHHTTCTTTSEE----------------
T ss_pred             EEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCHHHHHHHHHHhCCCCCceE----------------
Confidence            4567888999999999 9999999999998653 6 7777777753   3455566654 3332                


Q ss_pred             EEeccCccchhhhcCCC-----------CCCEEEEecCC
Q psy3452          76 AIDCTEHGPLCKEYDIK-----------GYPTFQYFHYF  103 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g  103 (116)
                        -.+.+.++++.||+.           +.|+.+++++|
T Consensus       113 --LsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII~dG  149 (176)
T 4f82_A          113 --MADGSAAFTHALGLTQDLSARGMGIRSLRYAMVIDGG  149 (176)
T ss_dssp             --EECTTCHHHHHHTCEEECGGGTCCEEECCEEEEEETT
T ss_pred             --EEcCchHHHHHhCCCccccccCCCcccccEEEEEcCC
Confidence              225678888888873           35778888555

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.59  E-value=4.5e-08  Score=55.32  Aligned_cols=52  Identities=23%  Similarity=0.525  Sum_probs=36.4

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTF   60 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~   60 (116)
                      |.-++.|+++||++|+++.+.+++.        .+.+..+|+++++.    +.+.+++..+|++
T Consensus         5 m~~v~ly~~~~C~~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l   60 (92)
T 2khp_A            5 MVDVIIYTRPGCPYCARAKALLARK--------GAEFNEIDASATPELRAEMQERSGRNTFPQI   60 (92)
T ss_dssp             CCCEEEEECTTCHHHHHHHHHHHHT--------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE
T ss_pred             cccEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            3457789999999999999888763        35566677766543    3335666777754

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.58  E-value=7.2e-08  Score=55.66  Aligned_cols=49  Identities=10%  Similarity=0.192  Sum_probs=34.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc----cC-CccccceE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK----EY-DIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~-~v~~~Pt~   60 (116)
                      ++.|+++||++|+++.+.+++.        .+.+..+|++.+++..+    .. +...+|++
T Consensus        18 v~vy~~~~Cp~C~~ak~~L~~~--------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i   71 (99)
T 3qmx_A           18 IEIYTWSTCPFCMRALALLKRK--------GVEFQEYCIDGDNEAREAMAARANGKRSLPQI   71 (99)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH--------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE
T ss_pred             EEEEEcCCChhHHHHHHHHHHC--------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE
Confidence            5669999999999999998864        35566677776654332    22 66666765

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.52  E-value=2.4e-07  Score=59.13  Aligned_cols=41  Identities=17%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      ++++.||++||++|+++.|.++++.+.+++  .+.+..++..-
T Consensus        27 ~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~~   67 (195)
T 3hd5_A           27 IEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIAF   67 (195)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCS
T ss_pred             eEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEeccc
Confidence            689999999999999999999999999987  68888888763

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.50  E-value=3.5e-08  Score=55.74  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHH
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      |.-++.|+++||++|++..+.+++.
T Consensus        11 M~~v~ly~~~~Cp~C~~~~~~L~~~   35 (92)
T 3ic4_A           11 MAEVLMYGLSTCPHCKRTLEFLKRE   35 (92)
T ss_dssp             CSSSEEEECTTCHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCChHHHHHHHHHHHc
Confidence            3345679999999999999888875

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.47  E-value=2.3e-07  Score=50.98  Aligned_cols=50  Identities=16%  Similarity=0.335  Sum_probs=33.6

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~   61 (116)
                      ++.|+++||++|+++.+.+++.        .+.+..+|++.++.    +.+.+++..+|++.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~   56 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF   56 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            5678999999999999888763        24455566665432    33455666666653

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.43  E-value=3.7e-07  Score=60.44  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      .+++.|+.+||++|+++.+.++++.+.  +  ++.+..+..
T Consensus        99 ~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g--~v~v~~~~~  135 (241)
T 1v58_A           99 VIVYVFADPFCPYCKQFWQQARPWVDS--G--KVQLRTLLV  135 (241)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHT--T--SEEEEEEEC
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHHhC--C--cEEEEEEEC
Confidence            578999999999999999999887664  2  466665554

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.42  E-value=1.5e-07  Score=55.21  Aligned_cols=49  Identities=14%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc----cc----ccccCCccccceE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH----GP----LCKEYDIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~----~~~~~~v~~~Pt~   60 (116)
                      ++.|+++||++|++..+.+++.        .+.+..+|++..    ++    +.+..+...+|++
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i   77 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL--------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV   77 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE
Confidence            5669999999999999998863        234445555542    11    3334466666666

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.41  E-value=5.3e-08  Score=59.66  Aligned_cols=37  Identities=14%  Similarity=0.102  Sum_probs=34.4

Q ss_pred             ce-eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IR-LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++ +.++++|.+++.+++++|+|++.||+++|++|+.+
T Consensus        67 g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~~v  104 (140)
T 2qgv_A           67 DYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYR  104 (140)
T ss_dssp             TSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTEEE
T ss_pred             CCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence            46 89999999999999999999999999999999765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.41  E-value=2.1e-07  Score=53.97  Aligned_cols=48  Identities=23%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             EEEEc-----CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceE
Q psy3452           5 ILFYS-----PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTF   60 (116)
Q Consensus         5 v~F~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~   60 (116)
                      +.|++     +||++|+++.+.+++.        .+.+..+|+++++.    +.+.++...+|++
T Consensus        20 vvf~~g~~~~~~C~~C~~~~~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v   76 (105)
T 2yan_A           20 MLFMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKAYSNWPTYPQL   76 (105)
T ss_dssp             EEEESBCSSSBCTTHHHHHHHHHHHH--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred             EEEEecCCCCCCCccHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence            34777     9999999999998865        35666777776654    2334566666665

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.41  E-value=6.7e-07  Score=57.26  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=37.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      ++++.|++.||++|+++.|.++++.+.+++  .+.+..+...-.
T Consensus        26 v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~~~   67 (193)
T 3hz8_A           26 VEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVVWQ   67 (193)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECCCS
T ss_pred             cEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCCCC
Confidence            589999999999999999999999999987  688888887643

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=98.40  E-value=1e-06  Score=57.59  Aligned_cols=89  Identities=6%  Similarity=-0.002  Sum_probs=64.5

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----CccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      +++++.|| +.||+.|....+.+++..+++++. ++.++.++++....   .++..    ++..+|              
T Consensus        53 K~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~-g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~--------------  117 (216)
T 3sbc_A           53 KYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ-GAQVLFASTDSEYSLLAWTNIPRKEGGLGPIN--------------  117 (216)
T ss_dssp             SEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCS--------------
T ss_pred             CeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC-CceEEEeecCchhhHHHHHHHHHHhCCccCcc--------------
Confidence            36889999 999999999999999999999876 48888888876432   22221    222211              


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                        ..+-.+.+.++++.|++-      ..++++++++.++|
T Consensus       118 --fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~I  155 (216)
T 3sbc_A          118 --IPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVI  155 (216)
T ss_dssp             --SCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBE
T ss_pred             --cceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeE
Confidence              123347889999999983      46889999777665

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.39  E-value=5.2e-07  Score=52.13  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHH
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      ++.|+++||++|+++.+.+++.
T Consensus        24 v~ly~~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           24 VIMYGLSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCchHHHHHHHHHHc
Confidence            5679999999999999999875

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.37  E-value=3e-07  Score=52.44  Aligned_cols=54  Identities=17%  Similarity=0.317  Sum_probs=39.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccccc-----CCccccceEEEcCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKE-----YDIKGYPTFHHLAL   65 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~   65 (116)
                      ++.|+++|||+|.+....+++.        .+.+..+|++++++..+.     .|.+.+|++++-++
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~~--------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg   64 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTAN--------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADG   64 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTS
T ss_pred             EEEEcCCCCHhHHHHHHHHHhc--------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCC
Confidence            5679999999999998888751        577888898887654332     26677888765444

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.37  E-value=1.9e-07  Score=54.36  Aligned_cols=37  Identities=19%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +++.++.+|++++.+++++|+|+++||+++|++|+.+
T Consensus        50 ~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G~~v   86 (105)
T 3zzx_A           50 SDVVFLKVDVDECEDIAQDNQIACMPTFLFMKNGQKL   86 (105)
T ss_dssp             TTEEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEE
T ss_pred             CCeEEEEEecccCHHHHHHcCCCeecEEEEEECCEEE
Confidence            3577899999999999999999999999999998765

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.37  E-value=1.8e-07  Score=57.04  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +++.++++|.+++.+++++|+|++.||+++|++|+.+
T Consensus        66 ~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~~v  102 (137)
T 2qsi_A           66 GRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERTL  102 (137)
T ss_dssp             TTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCEEE
T ss_pred             CCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence            5789999999999999999999999999999999765

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.27  E-value=4e-07  Score=50.72  Aligned_cols=52  Identities=17%  Similarity=0.203  Sum_probs=32.2

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc----ccccccCCc-----cccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH----GPLCKEYDI-----KGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v-----~~~Pt~~   61 (116)
                      ++.|+++||++|++....+++..    -  .+....+|...+    +++.+..+.     ..+|++.
T Consensus         6 v~ly~~~~Cp~C~~~~~~L~~~~----i--~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~   66 (89)
T 3msz_A            6 VKIYTRNGCPYCVWAKQWFEENN----I--AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIF   66 (89)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTT----C--CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEE
T ss_pred             EEEEEcCCChhHHHHHHHHHHcC----C--CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEE
Confidence            66799999999999988887532    1  344555554433    234444444     5555553

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.26  E-value=2.9e-06  Score=55.45  Aligned_cols=60  Identities=17%  Similarity=0.290  Sum_probs=48.1

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC--cccccccCCcc--ccceEEEcC
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIK--GYPTFHHLA   64 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~--~~Pt~~~~~   64 (116)
                      +++.|..+||+.|.++.+.++++++.+++  ++.++.+|.+.  ....++.+|+.  ..|++.+++
T Consensus       134 ~~l~f~~~~~~~~~~~~~~~~~vAk~~k~--~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~  197 (227)
T 4f9z_D          134 HLLLIMNKASPEYEENMHRYQKAAKLFQG--KILFILVDSGMKENGKVISFFKLKESQLPALAIYQ  197 (227)
T ss_dssp             EEEEEECTTSTTHHHHHHHHHHHHHHTTT--TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEE
T ss_pred             EEEEEEcCCcchHHHHHHHHHHHHHHhhC--CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEE
Confidence            45667789999999999999999999988  68888888864  45566777776  677777655

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.26  E-value=5.4e-06  Score=54.17  Aligned_cols=92  Identities=17%  Similarity=0.300  Sum_probs=72.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce---------------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT---------------   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~---------------   66 (116)
                      +++|-|+++||   ....+.+.++++.+.   .+.|+..   .+++++++++++. |++++|++.               
T Consensus        29 v~vVgff~~~~---~~~~~~f~~~A~~l~---~~~F~~t---~~~~v~~~~~v~~-p~i~lfk~~~~~~~~~~~~~~g~~   98 (227)
T 4f9z_D           29 VAVIGFFQDLE---IPAVPILHSMVQKFP---GVSFGIS---TDSEVLTHYNITG-NTICLFRLVDNEQLNLEDEDIESI   98 (227)
T ss_dssp             EEEEEECSCSC---STHHHHHHHHTTTCT---TSEEEEE---CCHHHHHHTTCCS-SEEEEEETTTTEEEEECHHHHHTC
T ss_pred             eEEEEEecCCC---chhHHHHHHHHHhCC---CceEEEE---CCHHHHHHcCCCC-CeEEEEEecCcccccccccccCCC
Confidence            57899999995   568899999999994   5777764   4677889999987 999887752               


Q ss_pred             -------------------------------------eee-----------------------ceeeEEEEecc--Cccc
Q psy3452          67 -------------------------------------IMI-----------------------IRLALAAIDCT--EHGP   84 (116)
Q Consensus        67 -------------------------------------v~f-----------------------~~~~~~~v~~~--~~~~   84 (116)
                                                           +.|                       +++.++.+|++  .+..
T Consensus        99 ~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~  178 (227)
T 4f9z_D           99 DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGK  178 (227)
T ss_dssp             CHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHH
T ss_pred             CHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHH
Confidence                                                 111                       56888989986  4667


Q ss_pred             hhhhcCCC--CCCEEEEecCC
Q psy3452          85 LCKEYDIK--GYPTFQYFHYF  103 (116)
Q Consensus        85 ~~~~~~v~--~~Pt~~~~~~g  103 (116)
                      +.+.||++  .+|++.+++.+
T Consensus       179 ~l~~fgl~~~~~P~~~i~~~~  199 (227)
T 4f9z_D          179 VISFFKLKESQLPALAIYQTL  199 (227)
T ss_dssp             HHHHTTCCGGGCSEEEEEESS
T ss_pred             HHHHcCCCcccCCEEEEEECC
Confidence            88999998  89999999643

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.20  E-value=1.1e-06  Score=61.49  Aligned_cols=43  Identities=9%  Similarity=0.259  Sum_probs=38.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      .+.++++||+.+.++|++|+|+++||+.+|++|+.   ..|.|..+
T Consensus        69 ~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f~~G~~---~~y~G~~~  111 (367)
T 3us3_A           69 GVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV---IEYDGEFS  111 (367)
T ss_dssp             TEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEE---EECCSCCS
T ss_pred             CceEEEEeCcccHHHHHHcCCCcCceEEEEECCcE---EEeCCCCC
Confidence            47889999999999999999999999999998754   58988764

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.19  E-value=8.1e-07  Score=56.68  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      +++|.|++.|||+|+++.|.+   .++.+.+++  ++.+...+..-
T Consensus        16 ~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~   59 (189)
T 3l9v_A           16 PAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHVSL   59 (189)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEECSS
T ss_pred             CEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEechh
Confidence            578999999999999999986   688888876  56666666553

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.18  E-value=4.8e-07  Score=54.57  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=32.7

Q ss_pred             EEEEEcCCCHHHHhh-hHHHHHHHHHhccCcceEEEEEeCCCc-------ccccccCCccccceE
Q psy3452           4 SILFYSPGCGYCKKA-KPEYVKAAEVLKDNHKVALAAIDCTEH-------GPLCKEYDIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~   60 (116)
                      ++.|+++||++|++. .+.+++....     .+.+..+|++.+       +.+.+.++...+|++
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~~-----~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v   98 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNVP-----KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV   98 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCCC-----GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCcc-----CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE
Confidence            567999999999999 7777654211     134444444433       234555666667765

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.17  E-value=2.3e-06  Score=50.37  Aligned_cols=51  Identities=14%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-------cccccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-------PLCKEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~v~~~Pt~~~   62 (116)
                      ++.|+++|||+|.+..+.+++.        .+.+..+|++..+       .+.+..+...+|++.+
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~--------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi   76 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL--------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV   76 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc--------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE
Confidence            4559999999999999888863        2445555655421       2344556667777643

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.14  E-value=7.7e-07  Score=54.49  Aligned_cols=43  Identities=9%  Similarity=0.206  Sum_probs=33.8

Q ss_pred             ceee--EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          70 IRLA--LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        70 ~~~~--~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      +++.  ++++|++.+.+++++|+|+++||+++|++|+.+  ..+.|.
T Consensus        66 ~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v--~~~~G~  110 (142)
T 2es7_A           66 PQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR--GALSGI  110 (142)
T ss_dssp             TTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC------CEESC
T ss_pred             cccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE--EEEeCC
Confidence            3567  899999999999999999999999999888664  345554

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.14  E-value=2.5e-06  Score=54.18  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +++.++++|.+++.+++++|+|+++||+++|++|+..
T Consensus        80 ~~v~f~kvD~d~~~~la~~~~I~siPtl~~F~~g~~~  116 (178)
T 3ga4_A           80 SLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESN  116 (178)
T ss_dssp             CCEEEEEEETTTCHHHHHHTTCCSSCEEEEECCCCGG
T ss_pred             CCEEEEEEECccCHHHHHHcCCCCCCEEEEEcCCCCC
Confidence            3689999999999999999999999999999998653

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.06  E-value=2.1e-06  Score=49.24  Aligned_cols=37  Identities=14%  Similarity=0.042  Sum_probs=24.3

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        48 ~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   84 (105)
T 4euy_A           48 NYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI   84 (105)
T ss_dssp             TTEEEEEEEECCC---------CCCCEEEEEETTEEE
T ss_pred             CCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE
Confidence            4678899999999999999999999999999888654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.06  E-value=3.6e-06  Score=49.93  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        67 ~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~  108 (123)
T 1oaz_A           67 KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGA  108 (123)
T ss_dssp             -CEEEEEETTSCTTTGGGGTCCBSSEEEEEESSSEE--EEEESC
T ss_pred             CeEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEE--EEEeCC
Confidence            578899999999999999999999999999777653  234454

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.06  E-value=4.6e-06  Score=57.50  Aligned_cols=82  Identities=12%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++|+++|| +.||+.|...++.+.+  ..+ .  .+.++.++.+...   .+++++++ .+|                  
T Consensus        25 k~vvl~F~p~~~tp~C~~e~~~~~~--~~~-~--~~~v~gis~D~~~~~~~f~~~~~l-~fp------------------   80 (322)
T 4eo3_A           25 KYTILFFFPKAGTSGSTREAVEFSR--ENF-E--KAQVVGISRDSVEALKRFKEKNDL-KVT------------------   80 (322)
T ss_dssp             SEEEEEECSSTTSHHHHHHHHHHHH--SCC-T--TEEEEEEESCCHHHHHHHHHHHTC-CSE------------------
T ss_pred             CeEEEEEECCCCCCCCHHHHHHHHH--Hhh-C--CCEEEEEeCCCHHHHHHHHHhhCC-ceE------------------
Confidence            46899999 6899999988777754  122 1  5788888876543   34556554 223                  


Q ss_pred             EeccCccchhhhcCC----CCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDI----KGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v----~~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.++++.|||    ...|+.+++++.++|
T Consensus        81 ~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i  114 (322)
T 4eo3_A           81 LLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFV  114 (322)
T ss_dssp             EEECTTCHHHHHTTCEETTEECCEEEEECTTSBE
T ss_pred             EEEcCchHHHHhcCCCCCCcCccEEEEECCCCEE
Confidence            223678899999999    457899999777665

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.04  E-value=1.1e-05  Score=50.57  Aligned_cols=41  Identities=17%  Similarity=0.228  Sum_probs=32.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      +++|.|..-.||+|+++.+.+.++.+.+.+...+.+..+..
T Consensus        23 ~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~   63 (184)
T 4dvc_A           23 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSF   63 (184)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSS
T ss_pred             CEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCC
Confidence            57899999999999999999999999998744444444433

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.04  E-value=3.3e-06  Score=50.11  Aligned_cols=59  Identities=12%  Similarity=0.148  Sum_probs=43.4

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |-+.|..=......+.+........+.+.++++|++++++++++++|+++||+++|+++
T Consensus        44 wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g  102 (127)
T 3h79_A           44 WSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRI  102 (127)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEECSS
T ss_pred             ccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEeCC
Confidence            34456555555555544433322223799999999999999999999999999999875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=4e-06  Score=49.80  Aligned_cols=43  Identities=30%  Similarity=0.546  Sum_probs=36.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ++.++.+|++.+.+++++|+|+++||+++|++|+.+  ..|.|..
T Consensus        61 ~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~--~~~~G~~  103 (133)
T 1x5d_A           61 KVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESP--VDYDGGR  103 (133)
T ss_dssp             SEEEEEEETTTCCHHHHHHTCCSSSEEEEEETTEEE--EEECSCC
T ss_pred             cEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCCCce--EEecCCC
Confidence            478899999999999999999999999999887643  5566653

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.03  E-value=3.2e-06  Score=48.62  Aligned_cols=42  Identities=21%  Similarity=0.409  Sum_probs=35.3

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.++.++++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        54 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~--~~~~g~   95 (111)
T 3gnj_A           54 SFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK--GKMAGD   95 (111)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE--EEEESS
T ss_pred             ceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE--EEEecc
Confidence            578899999999999999999999999999888654  344443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.01  E-value=3.4e-06  Score=58.42  Aligned_cols=43  Identities=7%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      ++.++.+||+.+.+++++|+|+++||+++|++|+   ...|.|..+
T Consensus        67 ~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~~~~g~---~~~~~G~~~  109 (350)
T 1sji_A           67 DIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDR---TIEFDGEFA  109 (350)
T ss_dssp             SEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTE---EEEECSCCC
T ss_pred             CcEEEEEeCCCCHHHHHhcCCCccceEEEEECCc---EEEecCCCC
Confidence            4788999999999999999999999999998886   257888753

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.01  E-value=5.1e-06  Score=49.35  Aligned_cols=43  Identities=16%  Similarity=0.268  Sum_probs=36.2

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .++.+..++++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        73 ~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~  115 (128)
T 3ul3_B           73 KRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTML--ARKDHF  115 (128)
T ss_dssp             GGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEE--EEESSC
T ss_pred             CCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEE--EEecCC
Confidence            4689999999999999999999999999999887654  345554

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.98  E-value=5e-06  Score=48.21  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=34.8

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        49 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~   90 (112)
T 2voc_A           49 KLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVV--ETSVGF   90 (112)
T ss_dssp             TCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEE--EEEESC
T ss_pred             CcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEE--EEEeCC
Confidence            578899999999999999999999999999777653  344554

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=97.98  E-value=5.4e-06  Score=50.40  Aligned_cols=44  Identities=9%  Similarity=0.196  Sum_probs=37.0

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .++.+..+|++.+.+++++|+|+++||++++++|+.+  ..|.|..
T Consensus        86 ~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~~  129 (148)
T 3p2a_A           86 GKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMI--DMLNGAV  129 (148)
T ss_dssp             TTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEESSCC
T ss_pred             CceEEEEEECcCCHHHHHHCCCCccCEEEEEECCeEE--EEEeCCC
Confidence            4688999999999999999999999999999888664  3456643

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.97  E-value=9.5e-06  Score=48.03  Aligned_cols=44  Identities=23%  Similarity=0.557  Sum_probs=37.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+.++.+|++.+.+++++|+|+++||+++|++|+.+ ...|.|..
T Consensus        67 ~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~~~-~~~~~G~~  110 (130)
T 2dml_A           67 VVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNK-PEDYQGGR  110 (130)
T ss_dssp             TSEEEEEETTTCHHHHHHHTCCSSSEEEEESSCTTS-CEECCSCC
T ss_pred             ceEEEEEeCCCCHHHHHHcCCCccCEEEEEeCCCCe-EEEeecCC
Confidence            478889999999999999999999999999887762 35677754

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.97  E-value=4.7e-06  Score=47.44  Aligned_cols=42  Identities=14%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .+.+..++++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        51 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~--~~~~g~   92 (106)
T 3die_A           51 KADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPV--DKVVGF   92 (106)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEE--EEEESC
T ss_pred             CcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEE--EEEeCC
Confidence            478899999999999999999999999999887654  244454

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.97  E-value=6.6e-06  Score=46.88  Aligned_cols=42  Identities=10%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..++++.+.+++++|+|.++||++++++|+.+  ..+.|.
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~--~~~~G~   93 (107)
T 2i4a_A           52 KVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVI--DKKVGA   93 (107)
T ss_dssp             SEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             cEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEE--EEecCC
Confidence            578899999999999999999999999999777654  234453

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.97  E-value=6.6e-06  Score=47.07  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   87 (108)
T 2trx_A           52 KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             TEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEE
Confidence            578899999999999999999999999999877653

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.94  E-value=5.5e-06  Score=58.05  Aligned_cols=45  Identities=24%  Similarity=0.560  Sum_probs=38.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      .+.++.+||+.+.+++++|+|+++||+++|++|+.+ ...|.|..+
T Consensus        60 ~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G~~~-~~~~~G~~~  104 (382)
T 2r2j_A           60 QVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMM-KREYRGQRS  104 (382)
T ss_dssp             CEEEEEEETTTCHHHHHHTTCCEESEEEEEETTEEE-EEECCSCCS
T ss_pred             ceEEEEEECCccHHHHHhcCCCcCCEEEEEeCCcEe-eeeecCcch
Confidence            478999999999999999999999999999988653 336888753

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.93  E-value=6.2e-06  Score=47.08  Aligned_cols=42  Identities=12%  Similarity=0.207  Sum_probs=35.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .+.+..++++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        53 ~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~~g~   94 (109)
T 3tco_A           53 KAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLV--DSLVGA   94 (109)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             CceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEE--Eeeecc
Confidence            578899999999999999999999999999877654  335554

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=97.92  E-value=6.9e-06  Score=50.68  Aligned_cols=43  Identities=26%  Similarity=0.341  Sum_probs=35.9

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      +++.+..+|++.+.+++++|+|+++||+++|++|+.+  ..+.|.
T Consensus        95 ~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~--~~~~G~  137 (155)
T 2ppt_A           95 GQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGREL--ARAAGA  137 (155)
T ss_dssp             TTCEEEEEETTTSTHHHHHTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             CCEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCCeEE--EEecCC
Confidence            3688999999999999999999999999999877654  334554

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.91  E-value=8.2e-06  Score=50.83  Aligned_cols=37  Identities=14%  Similarity=0.103  Sum_probs=33.8

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+.++++|.+++++++++|+|++.||+++|++|+.+
T Consensus        72 ~~v~f~kVDVDe~~e~a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           72 NFCVIYLVDITEVPDFNTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             TTEEEEEEETTTCCTTTTTTTCCSSEEEEEEETTEEE
T ss_pred             CCcEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence            3578999999999999999999999999999998775

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.91  E-value=1e-05  Score=48.57  Aligned_cols=44  Identities=9%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ..+.+..++++.+.+++++|+|+++||+++|++++++  ..+.|..
T Consensus        82 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~--~~~~G~~  125 (141)
T 3hxs_A           82 GKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEP--QVNMGAL  125 (141)
T ss_dssp             TTCEEEEEETTTCHHHHHHTTCCSSSEEEEECSSSCC--EEEESCC
T ss_pred             CceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCCCCE--EEEeCCC
Confidence            3588899999999999999999999999999666654  3566653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=97.90  E-value=8.8e-06  Score=47.58  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=32.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        62 ~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~   97 (116)
T 3qfa_C           62 NVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKV   97 (116)
T ss_dssp             TSEEEEEETTTTHHHHHHTTCCSSSEEEEESSSSEE
T ss_pred             CCEEEEEECCCCHHHHHHcCCccccEEEEEeCCeEE
Confidence            478899999999999999999999999999888654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.90  E-value=9.9e-05  Score=53.74  Aligned_cols=89  Identities=17%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee--------
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI--------   69 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f--------   69 (116)
                      +|-+.++.+.|..|.++...++++++.-+   ++.+...+  . ..       ...|++.+.+++    +.|        
T Consensus        20 ~v~l~~~~~~~~~~~~~~~~~~~~~~~s~---~i~~~~~~--~-~~-------~~~p~~~~~~~~~~~~i~f~g~p~g~e   86 (521)
T 1hyu_A           20 PVELIATLDDSAKSAEIKELLAEIAELSD---KVTFKEDN--T-LP-------VRKPSFLITNPGSQQGPRFAGSPLGHE   86 (521)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCT---TEEEEECT--T-SS-------SCSSEEEEECTTCCCSCEEESCCCGGG
T ss_pred             CEEEEEEeCCCcchHHHHHHHHHHHHhCC---ceEEEEcC--C-cc-------cCCCEEEEecCCCcceEEEeccCcchh
Confidence            56677788889999999999999876543   56653321  1 10       467888887543    444        


Q ss_pred             ------------------------------------------------------------ceeeEEEEeccCccchhhhc
Q psy3452          70 ------------------------------------------------------------IRLALAAIDCTEHGPLCKEY   89 (116)
Q Consensus        70 ------------------------------------------------------------~~~~~~~v~~~~~~~~~~~~   89 (116)
                                                                                  .++.+..+|.+.+.+++++|
T Consensus        87 ~~s~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~  166 (521)
T 1hyu_A           87 FTSLVLALLWTGGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITER  166 (521)
T ss_dssp             HHHHHHHHHHHTTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHT
T ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHh
Confidence                                                                        46888899999999999999


Q ss_pred             CCCCCCEEEEecCCcc
Q psy3452          90 DIKGYPTFQYFHYFNK  105 (116)
Q Consensus        90 ~v~~~Pt~~~~~~g~~  105 (116)
                      +|+++||+++  +|+.
T Consensus       167 ~i~svPt~~i--~g~~  180 (521)
T 1hyu_A          167 NVMGVPAVFV--NGKE  180 (521)
T ss_dssp             TCCSSSEEEE--TTEE
T ss_pred             CCCccCEEEE--CCEE
Confidence            9999999987  5544

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.90  E-value=1e-05  Score=47.16  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             EEEEEc-----CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceE
Q psy3452           4 SILFYS-----PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~   60 (116)
                      ++.|+.     +||++|++..+.+++.        .+.+..+|+++++.    +.+..+...+|++
T Consensus        17 vvvy~~g~~~~~~Cp~C~~ak~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i   74 (109)
T 1wik_A           17 VMLFMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             EEEEESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             EEEEEecCCCCCCCchHHHHHHHHHHc--------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence            344667     9999999999888753        46677888887653    3334566677764

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.90  E-value=1.4e-05  Score=50.69  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=34.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++.||.+|||+|..+.|.+.++.+.+++  .+.+..+...
T Consensus        24 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~   63 (195)
T 2znm_A           24 IEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHVV   63 (195)
T ss_dssp             EEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEECC
T ss_pred             cEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEeccc
Confidence            578999999999999999999999999876  5777776653

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.89  E-value=8.5e-06  Score=46.35  Aligned_cols=36  Identities=17%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        49 ~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   84 (105)
T 1nsw_A           49 KVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPV   84 (105)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEE
Confidence            478889999999999999999999999999777643

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.88  E-value=2.5e-05  Score=51.17  Aligned_cols=89  Identities=8%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---ccccc----CCccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKE----YDIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~----~~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      ++++++|| +.||+.|......+++..++++.. ++.++.++++...   ..+++    .++..+|              
T Consensus        57 K~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~--------------  121 (219)
T 3tue_A           57 KWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL-NCEVLACSIDSEYAHLQWTLQDRKKGGLGTMA--------------  121 (219)
T ss_dssp             SEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCS--------------
T ss_pred             CEEEEEEecccCCCCCchhHhhHHHHHhhhccC-CcEEEEeeCCchhhHHHHhhhhHHhcCccccc--------------
Confidence            36889999 999999999999999999999876 5888888888643   22222    1221211              


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                        ..+-++.+.++++.||+-      .+-+++++++.++|
T Consensus       122 --fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~I  159 (219)
T 3tue_A          122 --IPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGML  159 (219)
T ss_dssp             --SCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             --cccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeE
Confidence              223447889999999983      23577888776655

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.88  E-value=8.7e-06  Score=47.50  Aligned_cols=42  Identities=14%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~~G~  103 (121)
T 2i1u_A           62 DLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPV--KRIVGA  103 (121)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             CeEEEEEECCCCHHHHHhcCCCcCCEEEEEECCEEE--EEecCC
Confidence            588899999999999999999999999999877653  334454

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=97.88  E-value=7.1e-06  Score=47.01  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        52 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   87 (107)
T 1gh2_A           52 QAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVRI   87 (107)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CcEEEEEECccCHHHHHhcCCCcccEEEEEECCeEE
Confidence            578899999999999999999999999999888654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=97.87  E-value=1.1e-05  Score=48.18  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|.++||++++++|+.+
T Consensus        72 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~  107 (128)
T 2o8v_B           72 KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA  107 (128)
T ss_dssp             TEEEEEEETTTCCTTSGGGTCCSSSEEEEEETTEEE
T ss_pred             CeEEEEEECCCCHHHHHHcCCCccCEEEEEeCCEEE
Confidence            588999999999999999999999999999777653

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.87  E-value=2e-05  Score=50.77  Aligned_cols=44  Identities=23%  Similarity=0.458  Sum_probs=37.4

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+.++.++++.+.+++++|+|+++||++++++|+.+  ..|.|..
T Consensus       145 ~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~~  188 (210)
T 3apq_A          145 GLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAA--VKYNGDR  188 (210)
T ss_dssp             TTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCC--EECCSCC
T ss_pred             CceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCce--eEecCCC
Confidence            3588999999999999999999999999999887653  5677754

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.86  E-value=1e-05  Score=46.22  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        51 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   86 (107)
T 1dby_A           51 KLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC   86 (107)
T ss_dssp             TCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE
T ss_pred             ceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEE
Confidence            477889999999999999999999999999877653

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.86  E-value=9.2e-06  Score=47.01  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        50 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v   85 (110)
T 2l6c_A           50 QVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA   85 (110)
T ss_dssp             TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred             CcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence            577889999999999999999999999999887654

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.86  E-value=1e-05  Score=46.64  Aligned_cols=36  Identities=11%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        55 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   90 (112)
T 1t00_A           55 KIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVA   90 (112)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCCEEE
Confidence            578899999999999999999999999999887653

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=97.85  E-value=9.2e-06  Score=46.15  Aligned_cols=36  Identities=25%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        51 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~   86 (105)
T 3m9j_A           51 NVIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQKV   86 (105)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEE
T ss_pred             CeEEEEEEhhhhHHHHHHcCCCcCcEEEEEECCeEE
Confidence            478899999999999999999999999999888664

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.85  E-value=1e-05  Score=47.38  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=34.6

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..++++.+.+++++|+|.++||++++++|+.+  ..+.|.
T Consensus        63 ~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~  104 (119)
T 1w4v_A           63 KVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVV--DKFVGI  104 (119)
T ss_dssp             SSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             CeEEEEEeCCCCHHHHHHcCCCcccEEEEEeCCcEE--EEEcCC
Confidence            578899999999999999999999999999777653  244454

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.85  E-value=5.4e-06  Score=50.08  Aligned_cols=42  Identities=17%  Similarity=0.268  Sum_probs=35.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.++.++++.+.+++++|+|+++||++++++|+.+  ..|.|.
T Consensus        56 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~   97 (140)
T 3hz4_A           56 SAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV--WEQVGQ   97 (140)
T ss_dssp             TSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEE--EEEESS
T ss_pred             ceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEE--EEEcCC
Confidence            488899999999999999999999999999888664  345554

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.84  E-value=1.1e-05  Score=45.43  Aligned_cols=42  Identities=12%  Similarity=0.286  Sum_probs=34.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..++++.+.+++++|+++++||++++++|+.+  ..+.|.
T Consensus        47 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~--~~~~g~   88 (104)
T 2e0q_A           47 QVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPV--DEIIGA   88 (104)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE--EEEESC
T ss_pred             CceEEEEECCCCHHHHHhCCccccCEEEEEECCeEh--hhccCC
Confidence            377889999999999999999999999999877653  344453

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.84  E-value=1.2e-05  Score=45.78  Aligned_cols=42  Identities=19%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..++++.+.+++++|+|.++||++++++|+.+  ..+.|.
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~--~~~~g~   91 (109)
T 2yzu_A           50 KLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPV--EVLVGA   91 (109)
T ss_dssp             TBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             ceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEe--eeEeCC
Confidence            578899999999999999999999999999777653  234443

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.84  E-value=2.1e-06  Score=52.93  Aligned_cols=24  Identities=29%  Similarity=0.747  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKA   25 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~   25 (116)
                      .+++.|.-++|++|+++.+.++++
T Consensus        16 ~~vv~f~D~~Cp~C~~~~~~l~~l   39 (147)
T 3gv1_A           16 LKVAVFSDPDCPFCKRLEHEFEKM   39 (147)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCChhHHHHHHHHhhc
Confidence            578999999999999999988754

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.83  E-value=1.2e-05  Score=46.42  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=32.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|.++||++++++|+.+
T Consensus        57 ~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   92 (115)
T 1thx_A           57 RLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQIL   92 (115)
T ss_dssp             TCEEEEEESTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             cEEEEEEEcCCCHHHHHHcCCCceeEEEEEcCCEEE
Confidence            578899999999999999999999999999777653

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.82  E-value=1.3e-05  Score=46.22  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=32.3

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        54 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   89 (112)
T 3d6i_A           54 NVSFLSIDADENSEISELFEISAVPYFIIIHKGTIL   89 (112)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CEEEEEEecccCHHHHHHcCCCcccEEEEEECCEEE
Confidence            578899999999999999999999999999887654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.81  E-value=1.4e-05  Score=45.44  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=32.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   87 (106)
T 1xwb_A           52 NVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKV   87 (106)
T ss_dssp             TEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CeEEEEEeccchHHHHHHcCCCcccEEEEEcCCcEE
Confidence            577889999999999999999999999999887654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=97.81  E-value=1.4e-05  Score=48.16  Aligned_cols=42  Identities=21%  Similarity=0.407  Sum_probs=35.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..+|++.+.+++++|+|+++||+++|++|+.+  ..+.|.
T Consensus        82 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~  123 (140)
T 1v98_A           82 RLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPV--ATWVGA  123 (140)
T ss_dssp             TEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             ceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEE--EEEeCC
Confidence            688999999999999999999999999999887653  334443

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.80  E-value=1.2e-05  Score=46.36  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=32.3

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        55 ~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   90 (109)
T 3f3q_A           55 QADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEV   90 (109)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEE
Confidence            577889999999999999999999999999977654

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.79  E-value=1.2e-05  Score=51.15  Aligned_cols=38  Identities=11%  Similarity=0.209  Sum_probs=31.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      +++|+|++.||++|+++.|.++++.+.+ +   +.+..+...
T Consensus        24 ~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~---v~~~~~p~~   61 (185)
T 3feu_A           24 APVTEVFALSCGHCRNMENFLPVISQEA-G---TDIGKMHIT   61 (185)
T ss_dssp             CSEEEEECTTCHHHHHHGGGHHHHHHHH-T---SCCEEEECC
T ss_pred             CEEEEEECCCChhHHHhhHHHHHHHHHh-C---CeEEEEecc
Confidence            5799999999999999999999999988 3   445555543

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.77  E-value=6.9e-05  Score=47.32  Aligned_cols=39  Identities=8%  Similarity=0.158  Sum_probs=33.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      ++++.|+.+|||+|..+.+.+.++.+.+++  .+.+..+..
T Consensus        27 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   65 (193)
T 2rem_A           27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPA   65 (193)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEEC
T ss_pred             eEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCc
Confidence            578999999999999999999999998876  577766665

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.76  E-value=1.4e-05  Score=45.27  Aligned_cols=36  Identities=19%  Similarity=0.487  Sum_probs=31.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~   85 (105)
T 1fb6_A           50 KIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERK   85 (105)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             ceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEE
Confidence            477889999999999999999999999999877653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=97.76  E-value=1.6e-05  Score=47.20  Aligned_cols=36  Identities=14%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        68 ~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~~G~~~  103 (125)
T 1r26_A           68 TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKML  103 (125)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCEEEEEECCCCHHHHHHcCCCcccEEEEEeCCeEE
Confidence            578899999999999999999999999999887653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.73  E-value=2.7e-05  Score=46.65  Aligned_cols=42  Identities=10%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEe-cCCcccCCcCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYF-HYFNKQSPSPYHNDY  115 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~y~g~~  115 (116)
                      ++.+..++++.+.+++++|+|+++||++++ ++|+.   ..+.|..
T Consensus        70 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~---~~~~G~~  112 (136)
T 2l5l_A           70 QIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKP---EMAQGAM  112 (136)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCC---EEEESCC
T ss_pred             CEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcE---EEEeCCC
Confidence            578899999999999999999999999999 55543   2455543

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.72  E-value=0.00011  Score=45.79  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=31.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHh--ccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVL--KDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~--~~~~~~~~~~vd~   42 (116)
                      ++++.|+..|||+|..+.+.+.++.+++  ++  ++.+...+.
T Consensus        29 v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~--~v~~~~~~~   69 (175)
T 1z6m_A           29 VKMIEFINVRCPYCRKWFEESEELLAQSVKSG--KVERIIKLF   69 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT--SEEEEEEEC
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHHHhhCC--cEEEEEEeC
Confidence            5789999999999999999999998888  44  566655554

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.70  E-value=3.2e-05  Score=47.02  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||+++|++|+.+
T Consensus        55 ~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~v   90 (142)
T 1qgv_A           55 FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI   90 (142)
T ss_dssp             TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEEE
T ss_pred             CeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcEE
Confidence            578899999999999999999999999999888654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=97.70  E-value=2.1e-05  Score=45.80  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=31.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        63 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   98 (117)
T 2xc2_A           63 DAIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKV   98 (117)
T ss_dssp             SSEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CcEEEEEECCccHHHHHHcCCCccceEEEEeCCcEE
Confidence            467889999999999999999999999999887654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.70  E-value=3.3e-05  Score=52.54  Aligned_cols=46  Identities=28%  Similarity=0.628  Sum_probs=37.2

Q ss_pred             eeeEEEEecc--CccchhhhcCCCCCCEEEEecCCcc---------------cCCcCCCCCCC
Q psy3452          71 RLALAAIDCT--EHGPLCKEYDIKGYPTFQYFHYFNK---------------QSPSPYHNDYT  116 (116)
Q Consensus        71 ~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~~---------------~~~~~y~g~~~  116 (116)
                      .+.++.++++  .+.+++++|+|+++||+++|++|+.               .....|.|..+
T Consensus        67 ~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~  129 (298)
T 3ed3_A           67 VVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGART  129 (298)
T ss_dssp             TSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCCC-------------CCCEEEECCSCCS
T ss_pred             CcEEEEEEccCccCHHHHHhCCCCccceEEEEECCceeecccccccccccccccceeecCCcC
Confidence            4677888887  6789999999999999999998862               13578888764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.67  E-value=2.8e-05  Score=45.48  Aligned_cols=36  Identities=17%  Similarity=0.454  Sum_probs=32.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        65 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~  100 (122)
T 2vlu_A           65 NAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK  100 (122)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEE
Confidence            478899999999999999999999999999887653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=97.66  E-value=1.9e-05  Score=45.36  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=32.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        56 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   91 (112)
T 1ep7_A           56 KVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKA   91 (112)
T ss_dssp             TSEEEEEETTTTHHHHHHHTCCBSSEEEEEETTEEE
T ss_pred             CeEEEEEECCchHHHHHHcCCCcccEEEEEECCeEE
Confidence            578899999999999999999999999999887653

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=97.65  E-value=3.6e-05  Score=44.99  Aligned_cols=36  Identities=22%  Similarity=0.618  Sum_probs=32.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.++.+|++.+.+++++|+|+++||++++++|+.+
T Consensus        53 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~   88 (122)
T 3aps_A           53 KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAK   88 (122)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGG
T ss_pred             CeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCcc
Confidence            578899999999999999999999999999877653

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=97.65  E-value=2.7e-05  Score=44.02  Aligned_cols=36  Identities=17%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~   85 (104)
T 2vim_A           50 EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEV   85 (104)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCEEEEEeccCCHHHHHHcCCccccEEEEEeCCcEE
Confidence            567889999999999999999999999999887653

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=0.00014  Score=46.09  Aligned_cols=44  Identities=11%  Similarity=0.011  Sum_probs=34.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++++|+++++||..|..+....   +++.+.++.  ++.+...|.+..+
T Consensus        56 K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e  102 (178)
T 2ec4_A           56 KLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDS  102 (178)
T ss_dssp             CEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHH
T ss_pred             cEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCch
Confidence            4789999999999999987554   556666665  6888888887665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.64  E-value=2.8e-05  Score=52.08  Aligned_cols=42  Identities=17%  Similarity=0.425  Sum_probs=35.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..+|++.+.+++++|+|+++||+++|++|+.+  ..|.|.
T Consensus        58 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~--~~~~g~   99 (287)
T 3qou_A           58 QFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPV--DGFQGP   99 (287)
T ss_dssp             SSEEEEEETTTCHHHHHTTTCCSSSEEEEEETTEEE--EEEESC
T ss_pred             CeEEEEEeCccCHHHHHHcCCCCCCeEEEEECCEEE--EEeeCC
Confidence            588899999999999999999999999999887654  234443

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=97.63  E-value=4.2e-05  Score=46.83  Aligned_cols=36  Identities=19%  Similarity=0.476  Sum_probs=32.3

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||+++|++|+.+
T Consensus        63 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   98 (153)
T 2wz9_A           63 QVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKI   98 (153)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CeEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence            578899999999999999999999999999977553

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=97.63  E-value=0.00034  Score=44.40  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=56.7

Q ss_pred             eEEEEEE-cCCCHHHH-hhhHHHHHHHHHh-ccCcce-EEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeE
Q psy3452           2 FYSILFY-SPGCGYCK-KAKPEYVKAAEVL-KDNHKV-ALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~-~~~~~~~~~~~~~-~~~~~~-~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      ++++.|| +.||+.|. ...+.+++...++ ...+ + .++.+..+..   ...+++.++..+|                
T Consensus        45 ~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g-~~~V~gvS~D~~~~~~~~~~~~~~~~f~----------------  107 (182)
T 1xiy_A           45 KILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN-FDDIYCITNNDIYVLKSWFKSMDIKKIK----------------  107 (182)
T ss_dssp             EEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC-CSEEEEEESSCHHHHHHHHHHTTCCSSE----------------
T ss_pred             cEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCCCCce----------------
Confidence            4556555 88999999 8899999998888 6654 5 3666666653   4555666654333                


Q ss_pred             EEEeccCccchhhhcCCC-----------CCCEEEEecCC
Q psy3452          75 AAIDCTEHGPLCKEYDIK-----------GYPTFQYFHYF  103 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g  103 (116)
                        +-.+.+.++++.||+.           ...+.+++++|
T Consensus       108 --lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvIddG  145 (182)
T 1xiy_A          108 --YISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVENN  145 (182)
T ss_dssp             --EEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEETT
T ss_pred             --EEEeCchHHHHHhCCceeccccCCCCceEEEEEEEcCC
Confidence              2235778888888873           35677788754

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=97.63  E-value=3.3e-05  Score=44.60  Aligned_cols=36  Identities=17%  Similarity=0.365  Sum_probs=32.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|.++||++++++|+.+
T Consensus        57 ~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   92 (112)
T 1syr_A           57 KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSV   92 (112)
T ss_dssp             TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCEEEEEECCCCHHHHHHcCCCcccEEEEEECCcEE
Confidence            477889999999999999999999999999887653

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=97.62  E-value=3.4e-05  Score=44.95  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus        61 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   96 (114)
T 2oe3_A           61 DVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLI   96 (114)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEE
T ss_pred             CCEEEEEECCCCHHHHHHCCCCcccEEEEEeCCeEE
Confidence            367889999999999999999999999999887653

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.61  E-value=5.6e-05  Score=44.66  Aligned_cols=36  Identities=17%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        69 ~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~  104 (124)
T 1xfl_A           69 NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKIL  104 (124)
T ss_dssp             SEEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CcEEEEEECccCHHHHHHcCCCccCEEEEEECCEEE
Confidence            577889999999999999999999999999887653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.59  E-value=3.9e-05  Score=45.17  Aligned_cols=36  Identities=19%  Similarity=0.139  Sum_probs=31.5

Q ss_pred             ceeeEEEEe--ccCccchhhhcCCCCCCEEEEec-CCcc
Q psy3452          70 IRLALAAID--CTEHGPLCKEYDIKGYPTFQYFH-YFNK  105 (116)
Q Consensus        70 ~~~~~~~v~--~~~~~~~~~~~~v~~~Pt~~~~~-~g~~  105 (116)
                      .++.+..++  ++.+.+++++|+|.++||+++++ +|+.
T Consensus        57 ~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~   95 (126)
T 2l57_A           57 GKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNK   95 (126)
T ss_dssp             SSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCE
T ss_pred             CCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCE
Confidence            467889999  88999999999999999999998 5544

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=97.58  E-value=4.7e-05  Score=49.45  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=35.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      .+.+..++++.+.+++++|+|.++||++++++|+.+  ..+.|.
T Consensus        62 ~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~  103 (222)
T 3dxb_A           62 KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGA  103 (222)
T ss_dssp             TCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEEE--EEEESC
T ss_pred             CcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeEE--EEeccc
Confidence            478899999999999999999999999999888654  344444

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=97.57  E-value=2.9e-05  Score=45.59  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=31.7

Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+..++++.+.+++++|+|.++||++++++|+.+
T Consensus        67 v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~  101 (121)
T 2j23_A           67 VGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKI  101 (121)
T ss_dssp             SEEEEEETTTCHHHHHHHTCCSSSEEEEEETTEEE
T ss_pred             EEEEEEECcCCHHHHHHcCCCcccEEEEEECCeEE
Confidence            78899999999999999999999999999887653

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.57  E-value=0.00011  Score=39.93  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=28.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      ++.+..+|.+.+.+++++|+|+++||+++  +|+
T Consensus        34 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~   65 (85)
T 1fo5_A           34 AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGD   65 (85)
T ss_dssp             SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTE
T ss_pred             ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCE
Confidence            57888999999999999999999999999  554

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=97.57  E-value=6.9e-05  Score=42.23  Aligned_cols=53  Identities=8%  Similarity=0.011  Sum_probs=35.3

Q ss_pred             CeEEEEEEcCCCHHH------HhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCC--ccccceEE
Q psy3452           1 MFYSILFYSPGCGYC------KKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYD--IKGYPTFH   61 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C------~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~   61 (116)
                      |.-++.|+++||+.|      ++....+++    .    .+.+..+|++.+++    +.+..+  ...+|.+.
T Consensus         1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~----~----~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if   65 (93)
T 1t1v_A            1 MSGLRVYSTSVTGSREIKSQQSEVTRILDG----K----RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV   65 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHH----T----TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE
T ss_pred             CCCEEEEEcCCCCCchhhHHHHHHHHHHHH----C----CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE
Confidence            445677999999999      666655553    2    46777788876643    334556  55777664

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.57  E-value=5.9e-05  Score=48.14  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~   42 (116)
                      +++|.|+..|||+|.++.|.+   .++.+.+++...+.+..+..
T Consensus        23 ~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~   66 (191)
T 3l9s_A           23 PQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF   66 (191)
T ss_dssp             SCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSS
T ss_pred             CeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEeccc
Confidence            578999999999999999986   68999998733444444443

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=97.56  E-value=0.00011  Score=40.76  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=23.9

Q ss_pred             EEEEEcC----CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           4 SILFYSP----GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         4 ~v~F~a~----wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++.|+.+    ||+.|++....+++.        .+.+..+|++
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~--------gi~y~~idI~   37 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK--------KQPFEFINIM   37 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT--------TCCEEEEESC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc--------CCCEEEEEee
Confidence            4568899    999999998887752        3556666666

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.55  E-value=0.00017  Score=43.12  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             ceeeEEEEeccCccchhhhcCCCC--CCEEEEecC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKG--YPTFQYFHY  102 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~--~Pt~~~~~~  102 (116)
                      +++.++.+|.+++.+++++|+|++  .||++++++
T Consensus        53 gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~   87 (133)
T 2djk_A           53 GVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEV   87 (133)
T ss_dssp             TTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECT
T ss_pred             CeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEec
Confidence            468899999999999999999999  999999986

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=96.68  E-value=1.2e-05  Score=45.47  Aligned_cols=42  Identities=14%  Similarity=0.277  Sum_probs=34.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+  ..+.|.
T Consensus        51 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~--~~~~g~   92 (106)
T 2yj7_A           51 KVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVV--DRLVGA   92 (106)
Confidence            577788899999999999999999999999777653  345553

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.53  E-value=7e-05  Score=43.27  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        59 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~   94 (118)
T 2vm1_A           59 GAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKV   94 (118)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCCSBSEEEEEETTEEE
T ss_pred             CcEEEEEEcccCHHHHHHcCCCcCcEEEEEeCCeEE
Confidence            467889999999999999999999999999887654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.52  E-value=2.7e-05  Score=46.67  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=20.5

Q ss_pred             CCcccccccCCccccceEEEcCce
Q psy3452          43 TEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        43 ~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++++++++|++.++||++++++|
T Consensus        79 d~~~~l~~~~~v~~~Pt~~~~~~G  102 (135)
T 3emx_A           79 SAARLEMNKAGVEGTPTLVFYKEG  102 (135)
T ss_dssp             HHHHHHHHHHTCCSSSEEEEEETT
T ss_pred             hhhHHHHHHcCCceeCeEEEEcCC
Confidence            456678899999999999999974

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=97.51  E-value=0.0001  Score=45.06  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+.+..+|++.+.+++++|+|.++||++++++|+.+
T Consensus        55 ~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           55 MAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             TEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             ceEEEEEECCcCHHHHHHcCCCccCeEEEEECCeEE
Confidence            478899999999999999999999999999988764

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.49  E-value=0.00018  Score=47.13  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTF   60 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~   60 (116)
                      ++.|+.+||+.|++....+++.        .+.+..+|++.+..   +.+.++...+|++
T Consensus       172 i~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~  223 (241)
T 1nm3_A          172 ISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQV  223 (241)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEE
T ss_pred             EEEEECCCChHHHHHHHHHHHc--------CCceEEEECCCchHHHHHHHHhCCCCcCEE
Confidence            5678999999999998888753        34455566654432   3444555555554

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.46  E-value=0.00011  Score=42.13  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=31.6

Q ss_pred             ceeeEEEEecc-CccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCT-EHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.+..+|++ .+.+++++|+|+++||++++++|+.+
T Consensus        54 ~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   91 (111)
T 2pu9_C           54 LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVV   91 (111)
T ss_dssp             TTSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSSEE
T ss_pred             CCeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEE
Confidence            35788899988 78899999999999999988888653

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.45  E-value=7.8e-05  Score=43.62  Aligned_cols=32  Identities=13%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHY  102 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~  102 (116)
                      ++.+..+|++.+.+++++|+|+++||++++++
T Consensus        54 ~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~   85 (118)
T 2f51_A           54 DVTFIKVDVDKNGNAADAYGVSSIPALFFVKK   85 (118)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCSSSEEEEEEE
T ss_pred             CeEEEEEECCCCHHHHHhcCCCCCCEEEEEeC
Confidence            57889999999999999999999999999987

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.45  E-value=7.2e-05  Score=42.88  Aligned_cols=36  Identities=17%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        57 ~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   92 (113)
T 1ti3_A           57 NVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLV   92 (113)
T ss_dssp             SEEEEEEETTTCHHHHHHHHCSSTTEEEEEETTEEE
T ss_pred             CcEEEEEEccccHHHHHhCCCCcccEEEEEeCCEEE
Confidence            577889999999999999999999999999887653

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.45  E-value=0.00014  Score=39.52  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=28.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      ++.+..+|.+.+.+++++|+|+++||+++  +|+
T Consensus        33 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~   64 (85)
T 1nho_A           33 KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV   64 (85)
T ss_dssp             SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT
T ss_pred             CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCE
Confidence            57888999999999999999999999999  554

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.43  E-value=7.7e-05  Score=44.60  Aligned_cols=37  Identities=24%  Similarity=0.370  Sum_probs=32.5

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        76 ~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~  112 (139)
T 3d22_A           76 PSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQV  112 (139)
T ss_dssp             TTSEEEEEETTTSHHHHHHTTCCEESEEEEEETTEEE
T ss_pred             CCCEEEEEeCcccHHHHHHcCCCcccEEEEEcCCeEE
Confidence            3578899999999999999999999999999877653

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.41  E-value=7e-05  Score=43.87  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=31.6

Q ss_pred             ceeeEEEEecc-CccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCT-EHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.+..+|++ .+.+++++|+|+++||++++++|+.+
T Consensus        67 ~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~  104 (124)
T 1faa_A           67 LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVV  104 (124)
T ss_dssp             TTSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEE
T ss_pred             CCCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEE
Confidence            35788899987 68899999999999999999888653

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.40  E-value=5.3e-05  Score=44.60  Aligned_cols=36  Identities=17%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||++++++|+.+
T Consensus        67 ~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  102 (130)
T 1wmj_A           67 GAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEA  102 (130)
T ss_dssp             TBCCEECCTTTSGGGHHHHTCCSSCCCCBCTTTTCC
T ss_pred             CCEEEEEeccchHHHHHHcCCCccceEEEEeCCeEE
Confidence            467788999999999999999999999999887654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.39  E-value=8.2e-05  Score=44.50  Aligned_cols=34  Identities=29%  Similarity=0.507  Sum_probs=30.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEec--CCc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFH--YFN  104 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~--~g~  104 (116)
                      ++.+..+|++.+.+++++|+|+++||+++|+  +|+
T Consensus        70 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           70 YVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             ECEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTE
T ss_pred             CEEEEEEeccchHHHHHhcCCCCCCEEEEEEecCCC
Confidence            4778899999999999999999999999996  665

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.39  E-value=0.0002  Score=46.93  Aligned_cols=35  Identities=37%  Similarity=0.946  Sum_probs=31.4

Q ss_pred             eeeEEEEec--cCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          71 RLALAAIDC--TEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~--~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      .+.++.+|+  +.+.+++++|+|+++||+++|++|++
T Consensus        65 ~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~g~~  101 (244)
T 3q6o_A           65 ALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTX  101 (244)
T ss_dssp             TEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECTTCC
T ss_pred             cEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeCCCc
Confidence            588999999  67889999999999999999998755

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.0027  Score=41.84  Aligned_cols=54  Identities=26%  Similarity=0.365  Sum_probs=40.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      +++|-|+++||.   ...+.+.++++.+.+  .+.|..+   .+++++++++++. |++++|+
T Consensus        26 v~vvgff~~~~~---~~~~~f~~~A~~lr~--~~~F~~~---~~~~v~~~~~~~~-p~i~~fk   79 (252)
T 2h8l_A           26 ASIVGFFDDSFS---EAHSEFLKAASNLRD--NYRFAHT---NVESLVNEYDDNG-EGIILFR   79 (252)
T ss_dssp             CEEEEEESCTTS---HHHHHHHHHHHHTTT--TSCEEEE---CCHHHHHHHCSSS-EEEEEEC
T ss_pred             eEEEEEECCCCC---hHHHHHHHHHHhccc--CcEEEEE---ChHHHHHHhCCCC-CcEEEEc
Confidence            467888899854   467789999999976  5666665   3456778888886 8888665

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.32  E-value=0.00025  Score=41.96  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=30.4

Q ss_pred             eeeEEEEec---cCccchhhhcCC---CCCCEEEEe-cCCcc
Q psy3452          71 RLALAAIDC---TEHGPLCKEYDI---KGYPTFQYF-HYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~---~~~~~~~~~~~v---~~~Pt~~~~-~~g~~  105 (116)
                      ++.+..++.   +.+.+++++|+|   .++||++++ ++|+.
T Consensus        63 ~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~  104 (133)
T 3fk8_A           63 HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV  104 (133)
T ss_dssp             HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred             CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCE
Confidence            577888998   889999999999   999999999 55544

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=97.31  E-value=0.00042  Score=41.33  Aligned_cols=32  Identities=13%  Similarity=0.010  Sum_probs=24.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAA   39 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~   39 (116)
                      +++|-|+++||++|   .+.+.++++.+ +  .+.|+.
T Consensus        41 v~VVGfF~~~~~~~---~~~F~~~A~~~-~--d~~F~~   72 (124)
T 2l4c_A           41 VAVIGFFQDLEIPA---VPILHSMVQKF-P--GVSFGI   72 (124)
T ss_dssp             EEEEEECSCTTSTH---HHHHHHHHHHC-T--TSEEEE
T ss_pred             CEEEEEECCCCChh---HHHHHHHHHhC-C--CceEEE
Confidence            57889999999998   56889999988 4  355544

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.00011  Score=44.01  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=33.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-----cccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-----PLCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~   61 (116)
                      ++.|..+||+.|.+....+++.. .+.-  .+..+.+|.+.+.     .+.+..+...+|++.
T Consensus        16 Vvvysk~~Cp~C~~ak~lL~~~~-~~~v--~~~~idid~~~d~~~~~~~l~~~~G~~tVP~If   75 (127)
T 3l4n_A           16 IIIFSKSTCSYSKGMKELLENEY-QFIP--NYYIIELDKHGHGEELQEYIKLVTGRGTVPNLL   75 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHE-EEES--CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE
T ss_pred             EEEEEcCCCccHHHHHHHHHHhc-ccCC--CcEEEEecCCCCHHHHHHHHHHHcCCCCcceEE
Confidence            67799999999999998888631 0111  2344444443321     122334667788775

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.30  E-value=0.00013  Score=44.18  Aligned_cols=44  Identities=18%  Similarity=0.374  Sum_probs=29.3

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFH   61 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~   61 (116)
                      +||+.|++....+++.        .+.+..+|++.++++.    +..+...+|.+.
T Consensus        48 ~~Cp~C~~ak~~L~~~--------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf   95 (135)
T 2wci_A           48 PSCGFSAQAVQALAAC--------GERFAYVDILQNPDIRAELPKYANWPTFPQLW   95 (135)
T ss_dssp             BSSHHHHHHHHHHHTT--------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred             CCCccHHHHHHHHHHc--------CCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence            8999999998888653        3566677776654332    234556677653

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.28  E-value=0.00015  Score=41.28  Aligned_cols=40  Identities=33%  Similarity=0.659  Sum_probs=33.3

Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ++.+|++.+.+++++|+|+++||++++++|+.+  ..+.|..
T Consensus        59 ~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~--~~~~g~~   98 (111)
T 3uvt_A           59 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKV--SEHSGGR   98 (111)
T ss_dssp             EEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEECSCC
T ss_pred             EEEEeccccHhHHHhcCCCcccEEEEEeCCcEE--EeccCCc
Confidence            478899999999999999999999999888764  4566653

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=97.28  E-value=0.00021  Score=41.72  Aligned_cols=50  Identities=20%  Similarity=0.396  Sum_probs=33.3

Q ss_pred             EEEEEc-----CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEE
Q psy3452           4 SILFYS-----PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~   61 (116)
                      ++.|..     +||+.|++....+++.        .+.+..+|++.+++..    +..+...+|.+.
T Consensus        18 Vvlf~kg~~~~~~Cp~C~~ak~~L~~~--------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if   76 (111)
T 3zyw_A           18 CMLFMKGTPQEPRCGFSKQMVEILHKH--------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY   76 (111)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred             EEEEEecCCCCCcchhHHHHHHHHHHc--------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence            455777     9999999999888752        3556667776654332    233556677664

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.24  E-value=0.00046  Score=40.22  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=33.8

Q ss_pred             EEEEEcCCCHHHH------hhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccC--------CccccceEE
Q psy3452           4 SILFYSPGCGYCK------KAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEY--------DIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~------~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--------~v~~~Pt~~   61 (116)
                      ++.|+.+||+.|.      +....+++    .    .+.+..+|++.+++    +.+.+        +...+|.+.
T Consensus        10 V~vy~~~~C~~C~~~~~~~~ak~~L~~----~----gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vf   77 (111)
T 2ct6_A           10 IRVFIASSSGFVAIKKKQQDVVRFLEA----N----KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIF   77 (111)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH----T----TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEE
T ss_pred             EEEEEcCCCCCcccchhHHHHHHHHHH----c----CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEE
Confidence            4568899999999      55555543    2    47788888887653    33343        666788775

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.22  E-value=0.0003  Score=41.32  Aligned_cols=36  Identities=11%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             eeeEEEEec-------cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDC-------TEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~-------~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++.       +.+.+++++|+|+++||+++|++++++
T Consensus        63 ~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~~~~~~~~~  105 (123)
T 1wou_A           63 GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKL  105 (123)
T ss_dssp             TEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSSCEE
T ss_pred             CcEEEEEECCCchhhhchhHHHHHHCCCCeeCEEEEEcCCceE
Confidence            577888998       788899999999999999999886554

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.21  E-value=0.00018  Score=42.46  Aligned_cols=34  Identities=9%  Similarity=0.036  Sum_probs=28.7

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.+.++|.+..   +++|+|++.||+++|++|+.+
T Consensus        53 ~~v~f~kvd~d~~---~~~~~v~~~PT~~~fk~G~~v   86 (118)
T 3evi_A           53 PETKFVKAIVNSC---IQHYHDNCLPTIFVYKNGQIE   86 (118)
T ss_dssp             TTSEEEEEEGGGT---STTCCGGGCSEEEEEETTEEE
T ss_pred             CCCEEEEEEhHHh---HHHCCCCCCCEEEEEECCEEE
Confidence            4578899998864   589999999999999999654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.00024  Score=41.81  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             eeeEEEEecc--CccchhhhcCCCCCCEEEEec-CCcc
Q psy3452          71 RLALAAIDCT--EHGPLCKEYDIKGYPTFQYFH-YFNK  105 (116)
Q Consensus        71 ~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~-~g~~  105 (116)
                      .+.+..++++  .+.+++++|+|.++||+++++ +|+.
T Consensus        62 ~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~   99 (130)
T 2kuc_A           62 HFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEV   99 (130)
T ss_dssp             HSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCE
T ss_pred             CeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcE
Confidence            4567788877  577899999999999999994 5544

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=97.12  E-value=0.0014  Score=44.06  Aligned_cols=57  Identities=19%  Similarity=0.148  Sum_probs=39.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC------------------cccccccCCcccc--ceEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE------------------HGPLCKEYDIKGY--PTFH   61 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~------------------~~~~~~~~~v~~~--Pt~~   61 (116)
                      ..+..|++++|++|.+....+.++...+    .+.....+.+.                  .+.++++++.+.+  |.++
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~----~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~  119 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKG----DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAI  119 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHT----SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEE
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccC----CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEE
Confidence            4567799999999999999999987764    34322233221                  1235667888888  9876


Q ss_pred             E
Q psy3452          62 H   62 (116)
Q Consensus        62 ~   62 (116)
                      +
T Consensus       120 I  120 (270)
T 2axo_A          120 L  120 (270)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.12  E-value=0.00099  Score=41.88  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHH-HHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEY-VKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~-~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      +++|+||..+||+|..+.+.+ .++.+.+++  .+.+......
T Consensus        19 ~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~--~v~~~~~~l~   59 (195)
T 3c7m_A           19 KTLIKVFSYACPFCYKYDKAVTGPVSEKVKD--IVAFTPFHLE   59 (195)
T ss_dssp             TEEEEEECTTCHHHHHHHHHTHHHHHHHTTT--TCEEEEEECT
T ss_pred             cEEEEEEeCcCcchhhCcHHHHHHHHHhCCC--ceEEEEEecC
Confidence            467889999999999999999 999988876  4555555543

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.08  E-value=0.00029  Score=41.34  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ++.+|++.+.+++++|+|+++||++++++|+ +  ..|.|..
T Consensus        58 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~-~--~~~~G~~   96 (126)
T 1x5e_A           58 IAKVDVTEQPGLSGRFIINALPTIYHCKDGE-F--RRYQGPR   96 (126)
T ss_dssp             EEEEETTTCHHHHHHTTCCSSSEEEEEETTE-E--EECCSCC
T ss_pred             EEEEECcCCHHHHHHcCCcccCEEEEEeCCe-E--EEeecCC
Confidence            4678999999999999999999999997775 3  5677754

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.05  E-value=0.00023  Score=40.93  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=42.8

Q ss_pred             EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      =|-+.|..=......+.+..+.....-  .++.+|++++..+++++++.++||++++++|
T Consensus        34 ~~C~~C~~~~~~~~~~~~~~~~~~~~v--~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   91 (120)
T 1mek_A           34 PWCGHCKALAPEYAKAAGKLKAEGSEI--RLAKVDATEESDLAQQYGVRGYPTIKFFRNG   91 (120)
T ss_dssp             SSCSTTSTTHHHHHHHHHTTTTTCCCC--BCEEEETTTCCSSHHHHTCCSSSEEEEEESS
T ss_pred             CCCHHHHHhhHHHHHHHHHHhccCCcE--EEEEEcCCCCHHHHHHCCCCcccEEEEEeCC
Confidence            467888777766666655544332222  3578899999999999999999999998764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.04  E-value=0.00038  Score=40.84  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=31.5

Q ss_pred             ceeeEEEEeccCccc----hhhhcCCC-CCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGP----LCKEYDIK-GYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~----~~~~~~v~-~~Pt~~~~~~g~~~  106 (116)
                      .++.+..+|.+++.+    ++.+++|+ ..||+++|++|+.+
T Consensus        53 ~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G~~v   94 (112)
T 3iv4_A           53 RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGEMV   94 (112)
T ss_dssp             HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETTEEE
T ss_pred             CCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECCEEE
Confidence            357788999888865    89999999 49999999999765

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.03  E-value=0.00048  Score=40.69  Aligned_cols=35  Identities=11%  Similarity=0.009  Sum_probs=28.4

Q ss_pred             eeEEEEeccCc--cchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEH--GPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+.++|.+.+  .+++.+++|.+.||+++|++|+.+
T Consensus        53 ~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev   89 (116)
T 3dml_A           53 APVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVES   89 (116)
T ss_dssp             SCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEE
T ss_pred             ceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEE
Confidence            45667776654  578999999999999999988765

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=96.98  E-value=0.00089  Score=42.12  Aligned_cols=83  Identities=12%  Similarity=0.077  Sum_probs=56.5

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceE-EEEEeCCCc---ccccccCCcc-ccceEEEcCceeeeceeeEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVA-LAAIDCTEH---GPLCKEYDIK-GYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~-~~~vd~~~~---~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++.|| +.||+.|....+.+.+...+++..+ +. ++.+.++..   .+.+++.++. .+|                 
T Consensus        44 ~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g-v~~VigIS~D~~~~~~~w~~~~~~~~~f~-----------------  105 (171)
T 2xhf_A           44 KGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG-YHTIACIAVNDPFVMAAWGKTVDPEHKIR-----------------  105 (171)
T ss_dssp             EEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT-CCEEEEEESSCHHHHHHHHHHHCTTCCSE-----------------
T ss_pred             eEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHhcCCCCCeE-----------------
Confidence            4666666 7899999999999999988887654 53 667776654   3445555542 222                 


Q ss_pred             EEeccCccchhhhcCCC-----------CCCEEEEecCC
Q psy3452          76 AIDCTEHGPLCKEYDIK-----------GYPTFQYFHYF  103 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g  103 (116)
                       +-.+.+.++++.||+.           ...+.+++++|
T Consensus       106 -lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvIddG  143 (171)
T 2xhf_A          106 -MLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLIDDN  143 (171)
T ss_dssp             -EEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEETT
T ss_pred             -EEEeCCchHHHHhCCceeccccCCCcceEEEEEEEeCC
Confidence             2336778899988874           23566777744

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.97  E-value=0.00036  Score=41.55  Aligned_cols=39  Identities=28%  Similarity=0.508  Sum_probs=32.7

Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ++.+|++.+.+++++|+|+++||+++|++|+ +  ..|.|..
T Consensus        72 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~-~--~~~~g~~  110 (140)
T 2dj1_A           72 VAKIDATSASMLASKFDVSGYPTIKILKKGQ-A--VDYDGSR  110 (140)
T ss_dssp             EEEECTTTCHHHHHHTTCCSSSEEEEEETTE-E--EECCSCC
T ss_pred             EEEEeCcccHHHHHHCCCCccCeEEEEECCc-E--EEcCCCC
Confidence            4678999999999999999999999998776 3  5677754

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=96.96  E-value=0.00067  Score=39.34  Aligned_cols=43  Identities=16%  Similarity=0.339  Sum_probs=27.1

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTF   60 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~   60 (116)
                      |||+.|++....+++.        .+.+..+|+++++..    .+..+...+|.+
T Consensus        31 p~Cp~C~~ak~~L~~~--------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i   77 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL--------NVPFEDVNILENEMLRQGLKEYSNWPTFPQL   77 (109)
T ss_dssp             BSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred             CCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence            4999999999888763        355666666655432    222345556644

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=96.95  E-value=0.00021  Score=46.51  Aligned_cols=36  Identities=8%  Similarity=0.048  Sum_probs=31.7

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ..+.++.++++ +..++++|+|.++||+++|++|+.+
T Consensus       150 ~~v~f~~vd~~-~~~l~~~~~i~~~PTl~~~~~G~~v  185 (217)
T 2trc_P          150 PMVKFCKIRAS-NTGAGDRFSSDVLPTLLVYKGGELI  185 (217)
T ss_dssp             TTSEEEEEEHH-HHTCSTTSCGGGCSEEEEEETTEEE
T ss_pred             CCeEEEEEECC-cHHHHHHCCCCCCCEEEEEECCEEE
Confidence            56889999988 7889999999999999999988653

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=96.90  E-value=0.0013  Score=48.12  Aligned_cols=35  Identities=40%  Similarity=1.015  Sum_probs=30.5

Q ss_pred             eeeEEEEecc--CccchhhhcCCCCCCEEEEecCCcc
Q psy3452          71 RLALAAIDCT--EHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      .+.++.+|++  .+.+++++|+|+++||+++|++|++
T Consensus        65 ~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~  101 (519)
T 3t58_A           65 ALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTK  101 (519)
T ss_dssp             TEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCC
T ss_pred             cEEEEEEECCccccHHHHHHcCCcccCEEEEEcCccc
Confidence            5889999995  5889999999999999999987543

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.87  E-value=0.00085  Score=39.52  Aligned_cols=39  Identities=23%  Similarity=0.490  Sum_probs=33.6

Q ss_pred             EEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452          75 AAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHN  113 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g  113 (116)
                      +.+|++.+..++++|+|+++||++++++|+++....|.|
T Consensus        63 ~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g  101 (133)
T 2dj3_A           63 AKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEG  101 (133)
T ss_dssp             EEECTTTSCCCCSSCCCSSSSEEEEECTTCTTSCEECCS
T ss_pred             EEecCCcCHHHHhhcCCCcCCEEEEEeCCCcccceEecC
Confidence            578889999999999999999999999888766666773

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=96.87  E-value=0.002  Score=37.16  Aligned_cols=14  Identities=29%  Similarity=0.660  Sum_probs=12.5

Q ss_pred             CccccceEEEcCce
Q psy3452          53 DIKGYPTFHHLALT   66 (116)
Q Consensus        53 ~v~~~Pt~~~~~~~   66 (116)
                      +++++||+++++++
T Consensus        78 ~v~~~Pt~~~~~~~   91 (121)
T 2djj_A           78 EIQGFPTIKLYPAG   91 (121)
T ss_dssp             CCSSSSEEEEECSS
T ss_pred             ccCcCCeEEEEeCc
Confidence            78999999999875

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.87  E-value=0.0013  Score=39.23  Aligned_cols=34  Identities=9%  Similarity=-0.000  Sum_probs=27.7

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.+..+|++...   ++|+|+++||+++|++|+.+
T Consensus        60 ~~v~~~~vd~~~~~---~~~~i~~~Pt~~~~~~G~~v   93 (135)
T 2dbc_A           60 PETKFVKAIVNSCI---EHYHDNCLPTIFVYKNGQIE   93 (135)
T ss_dssp             SSEEEEEECCSSSC---SSCCSSCCSEEEEESSSSCS
T ss_pred             CCcEEEEEEhhcCc---ccCCCCCCCEEEEEECCEEE
Confidence            35778888887654   78999999999999988654

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0021  Score=37.97  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=28.7

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceE---EEEEeCCCcccc----cccCCccccceEE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVA---LAAIDCTEHGPL----CKEYDIKGYPTFH   61 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~---~~~vd~~~~~~~----~~~~~v~~~Pt~~   61 (116)
                      |||++|++....+++.        .+.   +..+|++.++++    .+..+...+|.+.
T Consensus        29 p~Cp~C~~ak~lL~~~--------gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vf   79 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQ--------GVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLY   79 (121)
T ss_dssp             BCTTHHHHHHHHHHHH--------TBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEE
T ss_pred             CCCccHHHHHHHHHHc--------CCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence            4999999999888874        233   556666655433    2334566677664

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=96.74  E-value=0.00076  Score=44.85  Aligned_cols=24  Identities=13%  Similarity=0.463  Sum_probs=21.6

Q ss_pred             eCCC-----cccccccCCcc--ccceEEEcC
Q psy3452          41 DCTE-----HGPLCKEYDIK--GYPTFHHLA   64 (116)
Q Consensus        41 d~~~-----~~~~~~~~~v~--~~Pt~~~~~   64 (116)
                      ||++     +++++++|+|+  ++||+++|.
T Consensus        73 D~d~~g~~~n~~la~~~~V~~~~~PTl~~F~  103 (248)
T 2c0g_A           73 GVKDYGELENKALGDRYKVDDKNFPSIFLFK  103 (248)
T ss_dssp             EECSSTTCTTHHHHHHTTCCTTSCCEEEEES
T ss_pred             ECCcccccccHHHHHHhCCCcCCCCeEEEEe
Confidence            5566     78999999999  999999998

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.74  E-value=0.00067  Score=40.43  Aligned_cols=33  Identities=15%  Similarity=0.295  Sum_probs=29.3

Q ss_pred             EEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      ++.+|++.+.+++++|+|+      ++||+++|++|+.+
T Consensus        62 ~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~~~~G~~~  100 (137)
T 2dj0_A           62 FGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEA  100 (137)
T ss_dssp             EEECCTTTCHHHHHHTTCCCCSSSSCSSEEEEESSSSEE
T ss_pred             EEEEeCccCHHHHHHccCcccCCcCCCCEEEEEECCEEE
Confidence            4778999999999999999      99999999888754

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=96.73  E-value=0.0011  Score=38.11  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             CccchhhhcCCCCCCEEEEecCCc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      ++.+++++|+|+++||+++  +|+
T Consensus        54 ~~~~l~~~~~V~~~PT~~i--~G~   75 (106)
T 3kp8_A           54 PQAQECTEAGITSYPTWII--NGR   75 (106)
T ss_dssp             CCCHHHHHTTCCSSSEEEE--TTE
T ss_pred             hhHHHHHHcCCeEeCEEEE--CCE
Confidence            5788999999999999887  553

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=96.67  E-value=0.0023  Score=39.03  Aligned_cols=14  Identities=21%  Similarity=0.693  Sum_probs=5.8

Q ss_pred             cccCCccccceEEE
Q psy3452          49 CKEYDIKGYPTFHH   62 (116)
Q Consensus        49 ~~~~~v~~~Pt~~~   62 (116)
                      +++|++.++||+++
T Consensus       109 ~~~~~v~~~Pt~~~  122 (154)
T 2ju5_A          109 KAQYKVTGFPELVF  122 (154)
T ss_dssp             HHHTTCCSSSEEEE
T ss_pred             HHHcCCCCCCEEEE
Confidence            33444444444433

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=96.60  E-value=0.00082  Score=44.62  Aligned_cols=36  Identities=8%  Similarity=0.055  Sum_probs=30.8

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ..+.++.++++. ..++++|+|.++||+++|++|+.+
T Consensus       163 ~~v~f~kVd~d~-~~l~~~~~I~~~PTll~~~~G~~v  198 (245)
T 1a0r_P          163 PMVKFCKIKASN-TGAGDRFSSDVLPTLLVYKGGELL  198 (245)
T ss_dssp             TTSEEEEEEHHH-HCCTTSSCTTTCSEEEEEETTEEE
T ss_pred             CCCEEEEEeCCc-HHHHHHCCCCCCCEEEEEECCEEE
Confidence            568899999876 678999999999999999988653

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.59  E-value=0.00035  Score=41.12  Aligned_cols=31  Identities=29%  Similarity=0.640  Sum_probs=25.5

Q ss_pred             eeeEEEEec--cCccchhhhcCCCCCCEEEEec
Q psy3452          71 RLALAAIDC--TEHGPLCKEYDIKGYPTFQYFH  101 (116)
Q Consensus        71 ~~~~~~v~~--~~~~~~~~~~~v~~~Pt~~~~~  101 (116)
                      ++.+..+++  +.+.+++++|+|.++||+++++
T Consensus        54 ~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d   86 (130)
T 2lst_A           54 RFVVASVSVDTPEGQELARRYRVPGTPTFVFLV   86 (130)
Confidence            356667776  4668899999999999999994

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=96.57  E-value=0.0068  Score=38.78  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHH-HHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEY-VKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~-~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      ++++.|....||+|+++.+.+ ..+.+.|.+.+++.+...+..
T Consensus        31 vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p   73 (202)
T 3gha_A           31 VTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM   73 (202)
T ss_dssp             EEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred             EEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecC
Confidence            578999999999999999876 667777755446676666653

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=96.40  E-value=0.0016  Score=43.10  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             CCCcccccccCCcc--ccceEEEcCce
Q psy3452          42 CTEHGPLCKEYDIK--GYPTFHHLALT   66 (116)
Q Consensus        42 ~~~~~~~~~~~~v~--~~Pt~~~~~~~   66 (116)
                      |+.+++++++|+|+  ++||+++|++|
T Consensus        67 ~~~~~~l~~~~~V~~~~~PTl~~f~~G   93 (240)
T 2qc7_A           67 DKLNMELSEKYKLDKESYPVFYLFRDG   93 (240)
T ss_dssp             SCCSHHHHHHTTCCGGGCSEEEEEETT
T ss_pred             chhhHHHHHHcCCCCCCCCEEEEEeCC
Confidence            78889999999999  99999999875

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=96.31  E-value=0.0029  Score=39.83  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=30.1

Q ss_pred             eeeEEEEeccCccchhhhc--------CCCCCCEEEEec-CCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEY--------DIKGYPTFQYFH-YFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~-~g~~~  106 (116)
                      ++.+.++|.++..++.+.|        ++.++||+++++ +|+.+
T Consensus        74 ~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v  118 (173)
T 3ira_A           74 AFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPF  118 (173)
T ss_dssp             HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEE
T ss_pred             cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCCCCce
Confidence            4677889999889999888        999999999996 55443

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=96.23  E-value=0.0097  Score=36.25  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=41.6

Q ss_pred             EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC--CCcccccccCCccc--cceEEEcC
Q psy3452           7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC--TEHGPLCKEYDIKG--YPTFHHLA   64 (116)
Q Consensus         7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~--~~~~~~~~~~~v~~--~Pt~~~~~   64 (116)
                      |....-..-..+.+.++++++.+++  ++.|+.+|.  +......+.+|++.  .|++.+++
T Consensus        39 f~~~~~~~~~~~~~~~~~vAk~fkg--ki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~   98 (147)
T 3bj5_A           39 FLPKSVSDYDGKLSNFKTAAESFKG--KILFAFIDSDHTDNQRILEFFGLKKEECPAVRLIT   98 (147)
T ss_dssp             ECCTTSSSHHHHHHHHHHHHHTTTT--TCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEE
T ss_pred             EecCCcHhHHHHHHHHHHHHHHcCC--ceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEe
Confidence            4433333455678899999999987  799999998  55556778889885  89888765

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=96.22  E-value=0.0023  Score=46.27  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=40.4

Q ss_pred             cCCCHHHHhhhHHHHHHHHHhcc---CcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           9 SPGCGYCKKAKPEYVKAAEVLKD---NHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         9 a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      -+.|..=......+.+......+   .+.+.+++||++++++++++|+|+++||+++|+++
T Consensus        54 C~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTlilf~~g  114 (470)
T 3qcp_A           54 CGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPR  114 (470)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEEEEEEES
T ss_pred             CHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeEEEEECC
Confidence            34454444444444444332211   01699999999999999999999999999999643

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.17  E-value=0.0034  Score=33.25  Aligned_cols=30  Identities=10%  Similarity=-0.010  Sum_probs=23.5

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ++.+..++   +.+++++|+|+++||+++  +|+.
T Consensus        31 ~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~   60 (77)
T 1ilo_A           31 DAEFEKIK---EMDQILEAGLTALPGLAV--DGEL   60 (77)
T ss_dssp             CEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEE
T ss_pred             ceEEEEec---CHHHHHHCCCCcCCEEEE--CCEE
Confidence            34556666   778999999999999998  6654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=96.09  E-value=0.0037  Score=36.30  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|.+++.+++.+|+++ +|+++++.+|+.+
T Consensus        58 ~i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v   92 (107)
T 2fgx_A           58 WFELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL   92 (107)
T ss_dssp             CCCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE
T ss_pred             CCeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE
Confidence            3677889999999999999997 9999999888654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=96.08  E-value=0.0032  Score=39.27  Aligned_cols=36  Identities=11%  Similarity=-0.077  Sum_probs=30.2

Q ss_pred             eeeEEEEeccCccchhhhcC---CCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYD---IKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~---v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++.+.+.+++++|.   ++++||++++++|+++
T Consensus        85 ~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~  123 (167)
T 1z6n_A           85 NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNL  123 (167)
T ss_dssp             TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCE
T ss_pred             CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCE
Confidence            56778888888888999897   9999999999887554

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=96.07  E-value=0.019  Score=37.50  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHH-HHHHHHHhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPE-YVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~-~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      ++++.|....||+|+++.+. +.++.+.+.+.+++.+...+.
T Consensus        41 vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~   82 (226)
T 3f4s_A           41 ILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHF   82 (226)
T ss_dssp             EEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEEC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeC
Confidence            57899999999999999986 478888885444555554443

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=96.06  E-value=0.043  Score=31.55  Aligned_cols=58  Identities=9%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      ..|.+..-+...+....+.++.+.+-..+...+--+|..+++.+++.+++-.+||++-
T Consensus        15 lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK   72 (105)
T 1t4y_A           15 LQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVK   72 (105)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCeeeccHhhc
Confidence            3577888889998888999988777633478899999999999999999999999973

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=95.96  E-value=0.025  Score=35.28  Aligned_cols=40  Identities=25%  Similarity=0.421  Sum_probs=29.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHH-HHHHHHhccCcceEEEEEe
Q psy3452           2 FYSILFYSPGCGYCKKAKPEY-VKAAEVLKDNHKVALAAID   41 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~-~~~~~~~~~~~~~~~~~vd   41 (116)
                      +.++.|+...||+|..+.+.+ .++.+.+.+.+++.+....
T Consensus        13 ~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~   53 (186)
T 3bci_A           13 PLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVN   53 (186)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEE
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEe
Confidence            468899999999999999988 5777788653344444433

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=95.91  E-value=0.0054  Score=34.09  Aligned_cols=31  Identities=10%  Similarity=0.188  Sum_probs=26.5

Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +..+|.+++.+++++|+++ +|++++ .+|+.+
T Consensus        29 ~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v   59 (87)
T 1ttz_A           29 FFSVFIDDDAALESAYGLR-VPVLRD-PMGREL   59 (87)
T ss_dssp             EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEE
T ss_pred             eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEE
Confidence            4678989999999999998 999998 677654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=95.63  E-value=0.026  Score=34.57  Aligned_cols=34  Identities=9%  Similarity=0.057  Sum_probs=24.7

Q ss_pred             eEEEEecc-CccchhhhcCCCCCCEEEEec-CCccc
Q psy3452          73 ALAAIDCT-EHGPLCKEYDIKGYPTFQYFH-YFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~-~g~~~  106 (116)
                      .+..++.+ ...+++.++++.++||+++++ +|+.+
T Consensus        79 ~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v  114 (151)
T 3ph9_A           79 KFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVR  114 (151)
T ss_dssp             TCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBC
T ss_pred             CeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEE
Confidence            34555544 345678899999999999997 66554

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=95.63  E-value=0.019  Score=36.20  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=29.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHh-ccCcceEEEEEe
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVL-KDNHKVALAAID   41 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~~~~vd   41 (116)
                      ++++.|....||+|+++.+.+.++.+++ ++  ++.+.--+
T Consensus        16 vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g--~v~~v~r~   54 (182)
T 3gn3_A           16 RLFEVFLEPTCPFSVKAFFKLDDLLAQAGED--NVTVRIRL   54 (182)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHHHHCTT--TEEEEEEE
T ss_pred             EEEEEEECCCCHhHHHHHHHHHHHHHHhCCC--CEEEEEEE
Confidence            5789999999999999999888877666 44  45554433

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=95.43  E-value=0.022  Score=33.75  Aligned_cols=52  Identities=10%  Similarity=0.096  Sum_probs=33.4

Q ss_pred             EEEEEEcCCCHHHH------hhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccC--------CccccceEEE
Q psy3452           3 YSILFYSPGCGYCK------KAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEY--------DIKGYPTFHH   62 (116)
Q Consensus         3 v~v~F~a~wC~~C~------~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--------~v~~~Pt~~~   62 (116)
                      |++.|.++.|+.|.      +....|+.       . .+.|..+|++.+++    +.++.        |...+|.+++
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~-------k-gV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi   70 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEA-------N-KIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFN   70 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHH-------T-TCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEE
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHH-------C-CCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEE
Confidence            35668899999994      43333332       2 58888999886643    33455        5667776653

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=95.43  E-value=0.011  Score=36.36  Aligned_cols=35  Identities=3%  Similarity=0.064  Sum_probs=26.2

Q ss_pred             eeEEEEeccCccc-hhhhcCC--CCCCEEEEe-cCCccc
Q psy3452          72 LALAAIDCTEHGP-LCKEYDI--KGYPTFQYF-HYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~-~~~~~~v--~~~Pt~~~~-~~g~~~  106 (116)
                      +.+..++++.+.. ++++|++  .++||++++ ++|+.+
T Consensus        79 ~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~  117 (164)
T 1sen_A           79 HNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVH  117 (164)
T ss_dssp             TTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBC
T ss_pred             CeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEE
Confidence            5566777776666 7888888  669999999 566543

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=95.26  E-value=0.0068  Score=42.44  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=16.3

Q ss_pred             EEEEEcCCCHHHHhhhH-HHHH
Q psy3452           4 SILFYSPGCGYCKKAKP-EYVK   24 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~-~~~~   24 (116)
                      ++.|..+||+.|++... .+++
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~  284 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEK  284 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCcchHHHHHHHHHH
Confidence            56689999999999765 4554

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=95.26  E-value=0.076  Score=34.02  Aligned_cols=41  Identities=17%  Similarity=0.145  Sum_probs=29.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHH-HhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAE-VLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~-~~~~~~~~~~~~vd~   42 (116)
                      ++++.|....||+|+++.+.+....+ .|-+.+++.+.--+.
T Consensus        17 vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A           17 LRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence            57899999999999999987755544 774444565554443

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.09  E-value=0.018  Score=42.42  Aligned_cols=50  Identities=32%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-------ccccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-------GPLCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~   61 (116)
                      ++.|..+||+.|.+....+++.        .+.+..+|++..       +.+.+..+...+|.+.
T Consensus        20 v~vy~~~~Cp~C~~~k~~L~~~--------~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~   76 (598)
T 2x8g_A           20 VILFSKTTCPYCKKVKDVLAEA--------KIKHATIELDQLSNGSAIQKCLASFSKIETVPQMF   76 (598)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC--------CCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEE
Confidence            5679999999999999888853        233445555432       2233356778899884

>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A

Probab=94.98  E-value=0.045  Score=31.53  Aligned_cols=63  Identities=19%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++..|-+-.-+.+.+....+.++.+.+-+. ...+--+|..+++.+++.+++-.+||++-.-+
T Consensus         8 ~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~-~y~LeVIDv~~~PelAe~~~IvAtPTLiK~~P   70 (105)
T 1wwj_A            8 YVLKLYVAGNTPNSVRALKMLKNILEQEFQG-VYALKVIDVLKNPQLAEEDKILATPTLAKILP   70 (105)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTCCSCCTTCEEECHHHHGGGSC
T ss_pred             eEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-CeEEEEEEcccCHhHHhHCCeEEechhhhcCC
Confidence            4566677778888999888998887666533 78999999999999999999999999984443

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=94.96  E-value=0.036  Score=36.41  Aligned_cols=55  Identities=9%  Similarity=0.034  Sum_probs=43.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +++|-|++++|.   ...+.+.++++.+.+  .+.|+..   .+++++++++++. |++++|++
T Consensus        27 v~vVgff~~~~~---~~~~~F~~~A~~lr~--~~~F~~t---~~~~v~~~~~v~~-p~ivlfk~   81 (250)
T 3ec3_A           27 VVILGVFQGVGD---PGYLQYQDAANTLRE--DYKFHHT---FSTEIAKFLKVSL-GKLVLMQP   81 (250)
T ss_dssp             CEEEEECSCTTC---HHHHHHHHHHHHHTT--TCCEEEE---CCHHHHHHHTCCS-SEEEEECC
T ss_pred             eEEEEEEcCCCc---hHHHHHHHHHHhhhc--CcEEEEE---CcHHHHHHcCCCC-CeEEEEec
Confidence            468888998864   577899999999976  5777765   3567788899887 99999874

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=94.74  E-value=0.047  Score=32.54  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=26.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      +..|+.++|+.|++....+++.        .+.+..+|..+++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~--------gi~y~~~di~~~~   37 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH--------EIPFVERNIFSEP   37 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCEEEEETTTSC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCceEEEEccCCC
Confidence            4568899999999988888752        4666677776653

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=94.71  E-value=0.076  Score=34.81  Aligned_cols=63  Identities=11%  Similarity=0.104  Sum_probs=44.9

Q ss_pred             EEEEEEcCCCH---HHH-hhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCc----cccceEEEcCc
Q psy3452           3 YSILFYSPGCG---YCK-KAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDI----KGYPTFHHLAL   65 (116)
Q Consensus         3 v~v~F~a~wC~---~C~-~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v----~~~Pt~~~~~~   65 (116)
                      ++|.|+...+.   .+. .+...+.++++.+.+++ .+.++.+|.+....+.+.+|+    ...|++.+++.
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~  203 (252)
T 2h8l_A          132 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTA  203 (252)
T ss_dssp             EEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECT
T ss_pred             eEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeC
Confidence            45556544332   222 46778888999998722 499999999988888889999    35899988753

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=93.94  E-value=0.037  Score=37.58  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=17.6

Q ss_pred             ccchhhhcCCCCCCEEEEecCCc
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      +.+++++++|+++||+++  +|+
T Consensus       240 ~~~la~~~gI~~vPT~~i--~G~  260 (291)
T 3kp9_A          240 QAQECTEAGITSYPTWII--NGR  260 (291)
T ss_dssp             CCHHHHTTTCCSTTEEEE--TTE
T ss_pred             HHHHHHHcCCcccCeEEE--CCE
Confidence            788999999999999665  554

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=93.93  E-value=0.06  Score=36.25  Aligned_cols=27  Identities=15%  Similarity=0.220  Sum_probs=22.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEV   28 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~   28 (116)
                      .+++.|+-+.||+|+++.+.+++..+.
T Consensus       149 ~~I~vFtDp~CPYCkkl~~~l~~~l~~  175 (273)
T 3tdg_A          149 KILYIVSDPMCPHCQKELTKLRDHLKE  175 (273)
T ss_dssp             CEEEEEECTTCHHHHHHHHTHHHHHHH
T ss_pred             eEEEEEECcCChhHHHHHHHHHHHhhC
Confidence            468889999999999999999865543

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=93.56  E-value=0.022  Score=30.55  Aligned_cols=30  Identities=7%  Similarity=0.049  Sum_probs=21.5

Q ss_pred             eEEEEecc-CccchhhhcCCCCCCEEEEecCCc
Q psy3452          73 ALAAIDCT-EHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        73 ~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      .+..++.+ ++.+++++++++++||+++  +|+
T Consensus        34 ~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A           34 EIVHLGTDKARIAEAEKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEETTTCSSTHHHHHHHTCCEEEEEEE--TTE
T ss_pred             EEEEecCChhhHHHHHHcCCCcCCEEEE--CCE
Confidence            34444443 4677889999999999987  554

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=93.54  E-value=0.12  Score=30.33  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=26.0

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      +..|+.++|+.|++....+++-        .+.+..+|..+++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~~di~~~~   36 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH--------DVVFQEHNIMTSP   36 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT--------TCCEEEEETTTSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCC
Confidence            3468899999999998887741        4667777776553

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=93.20  E-value=0.09  Score=30.44  Aligned_cols=34  Identities=26%  Similarity=0.242  Sum_probs=24.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +..|+.++|+.|++....+++.        .+.+..+|..++
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~--------gi~~~~~di~~~   35 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH--------KVAYDFHDYKAV   35 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT--------TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC--------CCceEEEeecCC
Confidence            3468899999999988887751        466666766544

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=92.85  E-value=0.22  Score=29.13  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=25.9

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      +..|+.++|+.|++....+++-        .+.+..+|..+++
T Consensus         5 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~~di~~~~   39 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELDDL--------AWDYDAIDIKKNP   39 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCEEEEETTTSC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCceEEEEeccCc
Confidence            3457899999999998887752        4667777776654

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=92.49  E-value=0.13  Score=30.06  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=24.4

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +..|+.++|+.|++....+++.        .+.+..+|..++
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~--------gi~y~~~di~~~   40 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH--------GIDYTFHDYKKE   40 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc--------CCcEEEEeeeCC
Confidence            4457899999999998888762        355556666543

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=91.98  E-value=0.012  Score=33.88  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             CCCcccccccCCccccceEEEcCce
Q psy3452          42 CTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        42 ~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++....+++++++.++||++++++|
T Consensus        73 ~~~~~~~~~~~~i~~~Pt~~~~~~G   97 (118)
T 1zma_A           73 LNDLQAFRSRYGIPTVPGFVHITDG   97 (118)
T ss_dssp             HHHHHHHHHHHTCCSSCEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCCeEEEEECC
Confidence            4455678899999999999998764

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=91.21  E-value=0.21  Score=30.58  Aligned_cols=31  Identities=10%  Similarity=0.163  Sum_probs=23.3

Q ss_pred             eeEEEEecc--CccchhhhcCCCCCCEEEEecC
Q psy3452          72 LALAAIDCT--EHGPLCKEYDIKGYPTFQYFHY  102 (116)
Q Consensus        72 ~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~  102 (116)
                      +.+..+|.+  ++..+.++|++.++|++++++.
T Consensus        78 fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~  110 (153)
T 2dlx_A           78 FIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDP  110 (153)
T ss_dssp             EEEEEEESSSHHHHHHHHHHTCCSSSEEEEECT
T ss_pred             eEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeC
Confidence            445555554  3456889999999999999965

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=90.95  E-value=0.13  Score=27.36  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=22.9

Q ss_pred             eeEEEEeccCcc----chhhhcC--CCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHG----PLCKEYD--IKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~  106 (116)
                      +.+..+|.+.+.    ++.++++  +.++|++++  +|+.+
T Consensus        31 i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~--~g~~i   69 (85)
T 1ego_A           31 FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHI   69 (85)
T ss_dssp             CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEE
T ss_pred             ceEEEEecccChHHHHHHHHHhCCCCceeCeEEE--CCEEE
Confidence            456667765443    7888899  999999843  55543

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=90.69  E-value=0.3  Score=28.63  Aligned_cols=44  Identities=18%  Similarity=0.225  Sum_probs=26.8

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcce-EEEEEeCCCcccc----cccCCccccceEE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKV-ALAAIDCTEHGPL----CKEYDIKGYPTFH   61 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~vd~~~~~~~----~~~~~v~~~Pt~~   61 (116)
                      |.|+.|.+....+.+.        .+ .+..+|.+.++++    .+..+...+|.+.
T Consensus        33 P~C~fc~~ak~lL~~~--------gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIF   81 (118)
T 2wul_A           33 PQCGFSNAVVQILRLH--------GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY   81 (118)
T ss_dssp             BSSHHHHHHHHHHHHT--------TCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHh--------CCcCeEeecccCCHHHHHHHHHhccCCCCCeEe
Confidence            5799999988777542        22 3556676666533    3334555666664

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=90.61  E-value=0.24  Score=29.03  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=25.5

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      +..|+.++|+.|++....+++-        .+.+..+|..+++
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~~--------gi~~~~~di~~~~   40 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLIEN--------NIEYTNRLIVDDN   40 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTTC
T ss_pred             EEEEECCCChHHHHHHHHHHHc--------CCceEEEecccCc
Confidence            3457899999999988877741        4666667776554

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=90.50  E-value=0.14  Score=30.96  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=25.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      |.-+..|+.++|+.|++....+++     .   .+.+..+|..++
T Consensus         1 M~~itiY~~p~C~~crkak~~L~~-----~---gi~~~~idi~~~   37 (141)
T 1s3c_A            1 MSNITIYHNPASGTSRNTLEMIRN-----S---GTEPTIILYLEN   37 (141)
T ss_dssp             --CCEEECCTTCHHHHHHHHHHHH-----T---TCCCEEECTTTS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-----c---CCCEEEEECCCC
Confidence            333556889999999998888775     1   466666777654

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=90.37  E-value=1.1  Score=26.34  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .++|.|..|-|+-|......+.+    +.+  ...+.++|.-
T Consensus         3 ~tLILfGKP~C~vCe~~s~~l~~----led--eY~ilrVNIl   38 (124)
T 2g2q_A            3 NVLIIFGKPYCSICENVSDAVEE----LKS--EYDILHVDIL   38 (124)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHT----TTT--TEEEEEEECC
T ss_pred             ceEEEeCCCccHHHHHHHHHHHH----hhc--cccEEEEEee
Confidence            57999999999999998877744    444  5677777754

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=89.88  E-value=0.13  Score=30.21  Aligned_cols=38  Identities=11%  Similarity=0.167  Sum_probs=26.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      |.-+..|+.++|+.|++....+++     .   .+.+..+|..+++
T Consensus         4 M~~i~iY~~p~C~~c~ka~~~L~~-----~---gi~~~~~di~~~~   41 (121)
T 3rdw_A            4 MKDVTIYHNPRCSKSRETLALVEQ-----Q---GITPQVVLYLETP   41 (121)
T ss_dssp             --CCEEECCTTCHHHHHHHHHHHT-----T---TCCCEEECTTTSC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHH-----c---CCCcEEEeeccCC
Confidence            333556889999999998877763     1   4566677776653

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=88.96  E-value=0.15  Score=32.58  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=19.6

Q ss_pred             CccchhhhcCCCCCCEEEEecCCcc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ++.+++++++|++.||+++ .+|+.
T Consensus       169 ~~~~l~~~~gV~gTPt~vi-~nG~~  192 (211)
T 1t3b_A          169 KHYELGIQFGVRGTPSIVT-STGEL  192 (211)
T ss_dssp             HHHHHHHHHTCCSSCEEEC-TTSCC
T ss_pred             HHHHHHHHcCCCcCCEEEE-eCCEE
Confidence            5667889999999999998 56654

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=87.86  E-value=1.3  Score=27.93  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAA   39 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~   39 (116)
                      ..+..|+-.-||+|-...+.++++.+.+++.-.+.+.-
T Consensus         3 ~~I~~~~D~~CP~cy~~~~~l~~l~~~~~~~v~v~~~p   40 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYVV   40 (208)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred             eEEEEEECCCCchhhhhhHHHHHHHHhCCCCceEEEEe
Confidence            34667889999999999999999999987522343333

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=87.84  E-value=0.19  Score=28.43  Aligned_cols=22  Identities=9%  Similarity=-0.053  Sum_probs=16.7

Q ss_pred             cchhhhcCCCCCCEEEEecCCccc
Q psy3452          83 GPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        83 ~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ..+++++++.++||+ + .+|+.+
T Consensus        63 ~~l~~~~~v~~~Pt~-~-~~g~~v   84 (116)
T 2e7p_A           63 SALAHWTGRGTVPNV-F-IGGKQI   84 (116)
T ss_dssp             HHHHHHHSCCSSCEE-E-ETTEEE
T ss_pred             HHHHHHhCCCCcCEE-E-ECCEEE
Confidence            458899999999999 3 355543

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=87.67  E-value=0.51  Score=26.91  Aligned_cols=31  Identities=13%  Similarity=0.004  Sum_probs=22.1

Q ss_pred             EEEEeccCcc-------chhhhcCCCCCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHG-------PLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~-------~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +..+|.+.+.       ++.+.++++++|++++  +|+.+
T Consensus        49 ~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i   86 (114)
T 2hze_A           49 YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSI   86 (114)
T ss_dssp             EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEE
T ss_pred             eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            5566766553       6888899999999854  55543

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=86.83  E-value=0.26  Score=31.13  Aligned_cols=26  Identities=15%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHH
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEV   28 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~   28 (116)
                      .+..|+-..||+|....+.++++.+.
T Consensus         9 ~I~~f~D~~CP~C~~~~~~~~~l~~~   34 (216)
T 2in3_A            9 VLWYIADPMCSWCWGFAPVIENIRQE   34 (216)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCchhhcchHHHHHHHhc
Confidence            56778899999999888999998883

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=86.45  E-value=0.31  Score=29.06  Aligned_cols=28  Identities=14%  Similarity=0.390  Sum_probs=23.8

Q ss_pred             EEEeCCCcccccccCCccccceEEEcCc
Q psy3452          38 AAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        38 ~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ..++.+.+..++++|++..+||+++++.
T Consensus       103 ~~~~~d~~~~~~~~~~v~~~P~~~lid~  130 (164)
T 2h30_A          103 LPVVTDNGGTIAQNLNISVYPSWALIGK  130 (164)
T ss_dssp             SCEEECTTCHHHHHTTCCSSSEEEEECT
T ss_pred             ceEEEcCchHHHHHcCCCccceEEEECC
Confidence            4566788889999999999999999853

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=85.89  E-value=0.89  Score=25.32  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=24.4

Q ss_pred             eeeEEEEecc--CccchhhhcCCCCCCEEEEecCCcc
Q psy3452          71 RLALAAIDCT--EHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ++.+..+|.+  ++.++.++|+ .++|+++  .+|+.
T Consensus        43 ~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g~~   76 (100)
T 1wjk_A           43 RFILQEVDITLPENSTWYERYK-FDIPVFH--LNGQF   76 (100)
T ss_dssp             SSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESSSE
T ss_pred             CCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECCEE
Confidence            3667778877  7788999999 9999874  35544

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=85.68  E-value=1.4  Score=25.09  Aligned_cols=41  Identities=10%  Similarity=0.087  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452          20 PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ..+++..+.++-  .+.+.   .+.+..++++|++.++|++++++.
T Consensus        68 ~~~~~~~~~~~~--~~~~~---~d~~~~~~~~~~i~~~P~~~lid~  108 (136)
T 1lu4_A           68 GAMQSFVSKYNL--NFTNL---NDADGVIWARYNVPWQPAFVFYRA  108 (136)
T ss_dssp             HHHHHHHHHHTC--CSEEE---ECTTSHHHHHTTCCSSSEEEEECT
T ss_pred             HHHHHHHHHcCC--CceEE---ECCchhHHHhcCCCCCCEEEEECC
Confidence            455566666543  33332   256778899999999999999854

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=85.65  E-value=0.24  Score=31.69  Aligned_cols=24  Identities=17%  Similarity=0.216  Sum_probs=18.7

Q ss_pred             CccchhhhcCCCCCCEEEEecCCcc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ++.+++++++|++.||++ +.+|..
T Consensus       169 ~~~~l~~~~gV~gtPt~v-~~dG~~  192 (216)
T 1eej_A          169 DHYALGVQLGVSGTPAVV-LSNGTL  192 (216)
T ss_dssp             HHHHHHHHHTCCSSSEEE-CTTSCE
T ss_pred             HHHHHHHHcCCCccCEEE-EcCCeE
Confidence            566788999999999994 555544

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=85.14  E-value=0.15  Score=29.81  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             CCcccccccCCccccceEEEc-Cce
Q psy3452          43 TEHGPLCKEYDIKGYPTFHHL-ALT   66 (116)
Q Consensus        43 ~~~~~~~~~~~v~~~Pt~~~~-~~~   66 (116)
                      +.+.+++++|++.++||++++ ++|
T Consensus        78 ~~~~~l~~~~~v~~~Pt~~~~d~~G  102 (134)
T 2fwh_A           78 AQDVALLKHLNVLGLPTILFFDGQG  102 (134)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEECTTS
T ss_pred             chHHHHHHHcCCCCCCEEEEECCCC
Confidence            567788999999999999999 443

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=85.04  E-value=2.4  Score=27.51  Aligned_cols=47  Identities=11%  Similarity=0.044  Sum_probs=35.1

Q ss_pred             HHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccc--c-ceEEEcC
Q psy3452          15 CKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG--Y-PTFHHLA   64 (116)
Q Consensus        15 C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~   64 (116)
                      ...+...++++++.++   ++.|+.+|.++.....+.+|+..  . |.++.++
T Consensus       152 ~~~~~~~~~~vAk~~k---ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~  201 (250)
T 3ec3_A          152 TQFWRNKVLEVAKDFP---EYTFAIADEEDYATEVKDLGLSESGGDVNAAILD  201 (250)
T ss_dssp             HHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEEC
T ss_pred             HHHHHHHHHHHHHhhc---ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEc
Confidence            3457888899999887   48888899888877778888863  3 4665554

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=84.61  E-value=0.64  Score=27.10  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=22.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      +..|+.++|+.|++....+++     .   .+.+..+|..+
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~-----~---gi~~~~~di~~   38 (119)
T 3f0i_A            6 VVIYHNPKCSKSRETLALLEN-----Q---GIAPQVIKYLE   38 (119)
T ss_dssp             CEEECCTTCHHHHHHHHHHHH-----T---TCCCEEECHHH
T ss_pred             EEEEECCCChHHHHHHHHHHH-----c---CCceEEEEecc
Confidence            345779999999999888775     1   34555555543

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=83.93  E-value=0.48  Score=29.25  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=17.8

Q ss_pred             CccchhhhcCCCCCCEEEEecCCcc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      ++.++++++||++.||+++  +|+.
T Consensus       137 ~~~~~a~~~gv~GtPt~vv--nG~~  159 (186)
T 3bci_A          137 KDKKIAKDNHIKTTPTAFI--NGEK  159 (186)
T ss_dssp             HHHHHHHHTTCCSSSEEEE--TTEE
T ss_pred             HHHHHHHHcCCCCCCeEEE--CCEE
Confidence            3456778999999999987  5544

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=83.80  E-value=0.55  Score=27.63  Aligned_cols=41  Identities=10%  Similarity=0.148  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452          20 PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      ..+.+..+.++    +.+..+..+.+..+++.|++.++|++++++
T Consensus        85 ~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~~~P~~~~id  125 (156)
T 1kng_A           85 DNARRFLGRYG----NPFGRVGVDANGRASIEWGVYGVPETFVVG  125 (156)
T ss_dssp             HHHHHHHHHHC----CCCSEEEEETTSHHHHHTTCCSSCEEEEEC
T ss_pred             HHHHHHHHHcC----CCCceeeeCchhHHHHhcCcCccCeEEEEc
Confidence            34555555553    333334456778899999999999777764

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=83.77  E-value=2.6  Score=26.43  Aligned_cols=27  Identities=7%  Similarity=-0.068  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEV   28 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~   28 (116)
                      .++.+|..|||-......+.+.+....
T Consensus        11 ~~f~D~~CP~C~~~~~~~~~l~~~~~~   37 (216)
T 2in3_A           11 WYIADPMCSWCWGFAPVIENIRQEYSA   37 (216)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCchhhcchHHHHHHHhcCCC
Confidence            356788889999998888888777553

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=83.23  E-value=1  Score=26.35  Aligned_cols=41  Identities=15%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             HHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452          21 EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+.+..+.++    +.+..+-.+.+..+++.|++..+|++++++.
T Consensus        77 ~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~  117 (152)
T 2lja_A           77 AWENMVTKDQ----LKGIQLHMGTDRTFMDAYLINGIPRFILLDR  117 (152)
T ss_dssp             HHHHHHHHHT----CCSEEEECSSCTHHHHHTTCCSSCCEEEECT
T ss_pred             HHHHHHHhcC----CCCceeecCcchhHHHHcCcCCCCEEEEECC
Confidence            4455544443    2233444566778899999999999999973

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=82.94  E-value=0.96  Score=26.20  Aligned_cols=44  Identities=16%  Similarity=-0.025  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452          20 PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ..+.+..+.++-  ....+.-..+.+..+++.|++..+|++++++.
T Consensus        80 ~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~  123 (148)
T 3fkf_A           80 EAWETAIKKDTL--SWDQVCDFTGLSSETAKQYAILTLPTNILLSP  123 (148)
T ss_dssp             HHHHHHHHHTTC--CSEEECCSCGGGCHHHHHTTCCSSSEEEEECT
T ss_pred             HHHHHHHHHcCC--CceEEEccCCcchHHHHhcCCCCcCEEEEECC
Confidence            345555555543  33333211122668899999999999999853

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=82.45  E-value=0.46  Score=28.93  Aligned_cols=19  Identities=21%  Similarity=0.450  Sum_probs=16.2

Q ss_pred             CccchhhhcCCCCCCEEEE
Q psy3452          81 EHGPLCKEYDIKGYPTFQY   99 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~   99 (116)
                      ++.++++++||+++||+++
T Consensus       132 ~~~~~a~~~gv~gtPt~~i  150 (175)
T 3gyk_A          132 QSMALAQKLGFNGTPSFVV  150 (175)
T ss_dssp             HHHHHHHHHTCCSSSEEEE
T ss_pred             HHHHHHHHcCCccCCEEEE
Confidence            4566888999999999987

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=80.82  E-value=0.76  Score=26.02  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=20.5

Q ss_pred             CCCcccccccCCccccceEEEcCc
Q psy3452          42 CTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        42 ~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      .+.+..++++|++.++|++++++.
T Consensus        90 ~d~~~~~~~~~~v~~~P~~~lid~  113 (138)
T 4evm_A           90 VDPSGKLLETYGVRSYPTQAFIDK  113 (138)
T ss_dssp             ECTTCHHHHHTTCCSSSEEEEECT
T ss_pred             ECcchHHHHHcCcccCCeEEEECC
Confidence            456778999999999999999954

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=81.58  E-value=0.33  Score=28.19  Aligned_cols=25  Identities=16%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             eCCCcccccccCCccccceEEEcCc
Q psy3452          41 DCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus        41 d~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ..+....+++.|++..+|++++++.
T Consensus        93 ~~~~~~~~~~~~~v~~~P~~~lid~  117 (143)
T 2lus_A           93 RSGPASNVTAKYGITGIPALVIVKK  117 (143)
Confidence            3445567899999999999999983

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=80.30  E-value=0.73  Score=29.08  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             CccchhhhcCCCCCCEEEEecCCc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFN  104 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~  104 (116)
                      ++.+.++++||+++||+++.++|+
T Consensus       157 ~~~~~a~~~gv~g~Pt~~v~~~~~  180 (208)
T 3kzq_A          157 DQLSLAKSLGVNSYPSLVLQINDA  180 (208)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEETTE
T ss_pred             HHHHHHHHcCCCcccEEEEEECCE
Confidence            445667789999999999987664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	2e-07
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-06
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-06
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	1e-04
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-04
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	5e-04
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	9e-04
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	9e-04
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	0.001
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	0.002
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	0.002

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 2e-07
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 1  MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY--DIKGYP 58
           F +   Y       K+       + ++L     +  +      +  L ++Y  D + YP
Sbjct: 27 KFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGI--SDYGDKLNMELSEKYKLDKESYP 84

Query: 59 TFHH 62
           F+ 
Sbjct: 85 VFYL 88

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.6 bits (97), Expect = 2e-06
 Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 10/66 (15%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGP-----LCKEY--DIKG 56
          + F        K     +   ++        + +A +   ++G      L   Y  D K 
Sbjct: 24 VKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN 81

Query: 57 YPTFHH 62
          +P+   
Sbjct: 82 FPSIFL 87

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.5 bits (94), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
           +F SP C YC  A     +A +   D   V    I          EY +   P  
Sbjct: 6  EVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMAVPAI 59

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 5   ILFYSPGCGY------CKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
           +L++ P           +  +     AA+VL+D   V    +D  +   + K+  +    
Sbjct: 33  LLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGLTEED 91

Query: 59  TFHHLALTIMI 69
           + +      +I
Sbjct: 92  SIYVFKEDEVI 102

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (81), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
          + F++  CG CK   P   + A+  +   K+ +A ++  ++     +Y I+G PT   
Sbjct: 25 VDFWAEWCGPCKMIAPILDEIAD--EYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 34.8 bits (79), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + F++  CG C+   P   + AE   D  KV +A ++  E+     ++ I   PT 
Sbjct: 22 VDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTL 75

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 9e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
          ++ +   CG CK  KP++ ++ E+ + +H   +  ++  E           GY      
Sbjct: 30 VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 88

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 33.9 bits (77), Expect = 9e-04
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
            +YS  C  C          A     N ++   AID         E ++ G P  
Sbjct: 20 ETYYSLSCHNCPDVVQALNLMAV---LNPRIKHTAIDGGTFQNEITERNVMGVPAV 72

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 33.8 bits (77), Expect = 0.001
 Identities = 4/67 (5%), Positives = 15/67 (22%), Gaps = 1/67 (1%)

Query: 7   FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66
                            +            +A  D  +   +   ++++ +P        
Sbjct: 37  SDPRRTPEVSDNPVMIAELLREFPQFDWQ-VAVADLEQSEAIGDRFNVRRFPATLVFTDG 95

Query: 67  IMIIRLA 73
            +   L+
Sbjct: 96  KLRGALS 102

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          I FY+P CG+CK   P+Y +   +   +       I   +        +I+G+PT 
Sbjct: 25 IEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI 80

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5  ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
          + F++  CG C+   P    AA    D  KV    ID   +    K+Y ++G P  
Sbjct: 25 VYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPAL 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.87
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.85
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.84
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.84
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.84
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.84
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.83
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.83
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.83
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.82
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.82
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.82
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.82
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.81
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.81
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.81
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.8
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.79
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.78
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.77
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.77
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.77
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.77
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.76
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.75
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.74
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.73
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.72
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.71
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.71
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.7
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.69
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.68
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.66
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.66
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.65
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.65
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.64
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.56
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.51
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.47
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.36
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.35
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.29
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.23
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.99
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.94
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.83
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.82
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.82
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.81
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.78
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.73
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.7
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.65
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.62
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.52
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.47
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.46
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.42
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.41
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.4
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.38
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.37
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.36
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.33
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.29
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.28
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.26
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.25
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.21
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.18
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.15
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	98.14
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.14
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.11
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.1
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.1
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.09
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.08
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.07
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.05
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.02
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.01
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.99
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.9
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.89
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.88
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.85
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.84
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.81
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.8
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.79
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.75
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.7
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	97.68
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.67
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.64
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.63
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.58
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.48
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.41
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.39
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.36
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.33
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.14
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.98
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	96.9
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	96.26
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	96.25
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	96.09
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	95.8
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.69
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.36
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	95.29
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	95.11
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	95.1
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	94.71
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	94.59
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	94.45
d1wjka_	100	Thioredoxin-like structure containing protein C330	93.89
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.26
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	92.96
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	92.84
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	91.67
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	90.95
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	90.45
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	90.04
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	88.48
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	87.75
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	87.36
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	87.07
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	82.44
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	81.77
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	81.56
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	81.07
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	80.58

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2e-22  Score=119.86  Aligned_cols=77  Identities=40%  Similarity=0.755  Sum_probs=66.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      .++|+||++||++|+++.|.|+++++.+.+.                                      ++.++.+|++.
T Consensus        29 ~~lV~fya~wC~~C~~~~~~~~~la~~~~~~--------------------------------------~v~~~~vd~~~   70 (119)
T d2b5ea4          29 LVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--------------------------------------NITLAQIDCTE   70 (119)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--------------------------------------TCEEEEEETTT
T ss_pred             eEEEEEECCccCcccccchhhhhhhhhhccc--------------------------------------ceeeeeeeccc
Confidence            6899999999999999999999999988642                                      34567778888


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.+++++|+|.++||+++|++|+......|.|+++
T Consensus        71 ~~~l~~~~~v~~~Pti~~f~~g~~~~~~~y~g~~~  105 (119)
T d2b5ea4          71 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRT  105 (119)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETTCTTCEEECCSCCS
T ss_pred             hHHHHHHhccccCCeEEEEECCEEeeeEEecCCCC
Confidence            88899999999999999999888877788998764

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-22  Score=119.57  Aligned_cols=79  Identities=38%  Similarity=0.739  Sum_probs=68.5

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+|||+||++|+++.|.++++++.+.+..                                    ..+.++.+|++.
T Consensus        26 ~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~------------------------------------~~v~~~~vd~~~   69 (120)
T d1meka_          26 YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEG------------------------------------SEIRLAKVDATE   69 (120)
T ss_dssp             EEEEEEECSSCSTTSTTHHHHHHHHHTTTTTC------------------------------------CCCBCEEEETTT
T ss_pred             cEEEEEECCCcCCccccchhhhhhcccccccc------------------------------------cceeeecccccc
Confidence            68999999999999999999999999987532                                    245667888888


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +..++++|+|+++||+++|++|+.+....|.|..+
T Consensus        70 ~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~~~g~~~  104 (120)
T d1meka_          70 ESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGRE  104 (120)
T ss_dssp             CCSSHHHHTCCSSSEEEEEESSCSSSCEECCCCSS
T ss_pred             chhHHHHhCCccCCeEEEEECCeEeeeEEecCCCC
Confidence            88999999999999999999988877888998764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=118.60  Aligned_cols=64  Identities=20%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+|+|+|||+||++|+++.|.++++++++++  .+.++++|++++++++++|+|+++||++||.+|
T Consensus        23 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_          23 RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CEEEEEEECCCCccchhcChHHHHHHHHhhc--cceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            3799999999999999999999999999987  799999999999999999999999999999886

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.84  E-value=1.9e-21  Score=113.13  Aligned_cols=63  Identities=24%  Similarity=0.365  Sum_probs=55.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.+++  .+.++++|+++++.++++|+|.++||+++|++|
T Consensus        19 ~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G   81 (105)
T d1nw2a_          19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILFKGG   81 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             cEEEEEECCCCCCcccccchhhhhhhhcCC--ceEEEEEECCCCcccHHHCCcceeeEEEEEECC
Confidence            689999999999999999999999999987  688888888888888888888888888877764

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.2e-21  Score=117.47  Aligned_cols=77  Identities=25%  Similarity=0.459  Sum_probs=62.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +|+|+|||+||++|+++.|.|+++++.+++..                                    ..+.++.+|+  
T Consensus        32 ~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~------------------------------------~~v~~~~~d~--   73 (140)
T d2b5ea1          32 DVLVLYYAPWCGHCKRLAPTYQELADTYANAT------------------------------------SDVLIAKLDH--   73 (140)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC------------------------------------SSCEEEEEEG--
T ss_pred             CEEEEEEeccCcccchhHHHHHHHHHHHhccc------------------------------------cceEEEeeec--
Confidence            68999999999999999999999999986522                                    1223344443  


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +..++++|+|+++||+++|++|++.....|.|..|
T Consensus        74 ~~~~~~~~~v~~~Ptl~~f~~g~~~~~~~y~G~~t  108 (140)
T d2b5ea1          74 TENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRS  108 (140)
T ss_dssp             GGCCCSSCCCSSSSEEEEECCTTSCCCCBCCSCCC
T ss_pred             cchhccccccccCCeEEEEECCEEcceeEeCCCCC
Confidence            44578899999999999999998888889999865

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.84  E-value=2.6e-21  Score=112.91  Aligned_cols=63  Identities=25%  Similarity=0.417  Sum_probs=48.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ++|+|+|||+||++|+++.|.+.++++.+.+  ++.++.+|++.+++++++|+|+++||+++|++
T Consensus        20 kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~   82 (107)
T d1dbya_          20 VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             CcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEEEEecccchhHHHHhcccceEEEEEEEC
Confidence            4799999999999999999999999999877  56666666666665555555555555555554

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=4e-21  Score=112.85  Aligned_cols=64  Identities=28%  Similarity=0.519  Sum_probs=54.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+++.|.++++++.+++  .+.++.+|++++++++++++|+++||+++|++|
T Consensus        26 k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~~i~~d~~~~l~~~~~V~~~Pt~~~~~~G   89 (111)
T d1xwaa_          26 KLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTFVFLKNG   89 (111)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CEEEEEEECCcccCccccchhHHHHhhhccc--ceEEEEEEeecCcchhhcCCCccccEEEEEECC
Confidence            3789999999999999999999999999987  678888888888777777777777777777764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.83  E-value=3e-21  Score=112.82  Aligned_cols=64  Identities=19%  Similarity=0.394  Sum_probs=51.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+++.|.++++++.+++  .+.++++|++++++++++|+|+++||++++++|
T Consensus        21 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~~~g   84 (108)
T d1thxa_          21 QPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGE   84 (108)
T ss_dssp             SCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CcEEEEEECCCCCCccccchHHHHHHHhcCC--cceeceecccccHHHHHHhcccCCCEEEEEECC
Confidence            3689999999999999999999999999987  577777777777766666666666666666553

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.83  E-value=5.1e-21  Score=111.09  Aligned_cols=64  Identities=23%  Similarity=0.417  Sum_probs=50.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+++.|.++++++.+++  .+.++.+|++++++++++|+|+++||+++|++|
T Consensus        18 ~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G   81 (104)
T d1fb6a_          18 VPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG   81 (104)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             CcEEEEEEcCccCCccccCchhHHHHHhhcC--ccceeEEecccchhhhhhcceeeeeEEEEEEcC
Confidence            3689999999999999999999999999987  566777777766666666666666666666554

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=8.8e-21  Score=110.75  Aligned_cols=63  Identities=22%  Similarity=0.398  Sum_probs=49.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|+|+|||+||++|+.+.|.+.++++.+.+  ++.++.+|+++++.++++|+++++||+++|++|
T Consensus        22 ~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~~~G   84 (108)
T d2trxa_          22 AILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG   84 (108)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEEEEETT
T ss_pred             cEEEEEECCCCCCccccCcHHHHHHHHhhc--ceeeeeccccchhhHHHHhCCCcEEEEEEEECC
Confidence            689999999999999999999999998876  677777777666666666666666666666553

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.82  E-value=1e-20  Score=106.14  Aligned_cols=62  Identities=29%  Similarity=0.316  Sum_probs=52.1

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +.++.|||+||++|+.+.|.++++++.+++  .+.+..+|++++++++++|+|+++||++++++
T Consensus         4 v~v~~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~   65 (85)
T d1fo5a_           4 VKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVINGD   65 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEETTE
T ss_pred             eEEEEEECCCCcChHhhhhhcccccccccc--ccccccccccccccccccCCceEeeEEEEECC
Confidence            578899999999999999999999999876  67777788887777777777777777776655

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.82  E-value=6.2e-21  Score=112.27  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=56.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.+++  ++.++++|++++++++++|+|+++||+++|++|
T Consensus        26 ~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   88 (112)
T d1ep7a_          26 PIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDG   88 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBSSEEEEEETT
T ss_pred             eEEEEEEcCCcCCCcccchhhhhhhhcccc--eEEEEEeeccccccccccccccCCCEEEEEECC
Confidence            689999999999999999999999999986  688888888888888888888888888888775

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.5e-21  Score=110.43  Aligned_cols=62  Identities=24%  Similarity=0.446  Sum_probs=53.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.+++   +.++++|++++++++++++|+++||+++|++|
T Consensus        22 ~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~~G   83 (105)
T d2ifqa1          22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKCMPTFQFFKKG   83 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             EEEEEEEcCCccchhhhhhhhhhhcccccc---ceeeecccccCHhHHHHcCceEEEEEEEEECC
Confidence            689999999999999999999999998874   56888888888888888888888888887765

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.82  E-value=1e-20  Score=111.58  Aligned_cols=79  Identities=25%  Similarity=0.399  Sum_probs=60.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .+|+|+|||+||++|+++.|.|+++++.+.+....                                  ..+.   +++.
T Consensus        21 k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~----------------------------------~~~~---~~~~   63 (116)
T d2djja1          21 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK----------------------------------DRVV---IAKV   63 (116)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCT----------------------------------TSSE---EEEE
T ss_pred             CCEEEEEEecccccccccchHHHHHHHHHhccccc----------------------------------ceeE---EEec
Confidence            36899999999999999999999999999764210                                  0112   2223


Q ss_pred             CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      .....+.+++|+++||+.+|++|++.....|.|.++
T Consensus        64 ~~~~~~~~~~v~~~Pti~~f~~g~~~~~~~~~g~~~   99 (116)
T d2djja1          64 DATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRT   99 (116)
T ss_dssp             ETTTSCCSSCCSSSSEEEEECSSCTTSCCCCCCCSC
T ss_pred             ccchhhhcccccCCCEEEEEECCccCceEEecCCCC
Confidence            344555688999999999999988777788999864

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-20  Score=110.52  Aligned_cols=62  Identities=18%  Similarity=0.391  Sum_probs=55.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+++.|.+++++++++   ++.++++|++++++++++++|+++||+++|++|
T Consensus        23 lvvv~F~a~wC~~Ck~~~p~~~~la~~~~---~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   84 (107)
T d1gh2a_          23 LAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQFFRNK   84 (107)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             EEEEEEECCCCCCccccchhhhccccccc---cccccccccccchhhhhhcCceeceEEEEEECC
Confidence            68999999999999999999999999987   478889998888888888888888888888775

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.82  E-value=1.1e-20  Score=111.42  Aligned_cols=62  Identities=21%  Similarity=0.296  Sum_probs=53.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+++.|.++++++.++   ++.++++|++++++++++|+|+++||+++|++|
T Consensus        28 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G   89 (113)
T d1r26a_          28 LTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSG   89 (113)
T ss_dssp             CEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             eEEEEEECCCCccchhhceeccccccccc---cccccccccccchhhHHHccccCCCEEEEEECC
Confidence            68999999999999999999999999986   588888888888888888888888888777764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=2e-20  Score=110.30  Aligned_cols=62  Identities=24%  Similarity=0.440  Sum_probs=53.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+|||+||++|+.+.|.++++++.++   .+.++.+|++++++++++|+|+++||+++|++|
T Consensus        30 ~vlv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~~~~~~l~~~~~V~~~Pt~~~~~~G   91 (114)
T d1xfla_          30 LVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEG   91 (114)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             eEEEEEEcCCCCCccccccchhhhccccc---ccceeEEEeeeceeeccccceeeeEEEEEEECC
Confidence            68999999999999999999999999887   477888888888887777888777777777764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.81  E-value=1.3e-20  Score=111.04  Aligned_cols=63  Identities=22%  Similarity=0.414  Sum_probs=52.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+++|+|||+||++|+.+.|.++++++.++   .+.++.+|++++++++++++|+++||+++|++|
T Consensus        27 k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~k~G   89 (113)
T d1ti3a_          27 KLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDG   89 (113)
T ss_dssp             SEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSSTTEEEEEETT
T ss_pred             CEEEEEEEcCccccchhhhhhhhhhhccCC---CceEEeeeeeccccccccCeecccceEEEEECC
Confidence            378999999999999999999999999986   467888888877777777777777777777764

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=9.2e-21  Score=106.44  Aligned_cols=59  Identities=25%  Similarity=0.363  Sum_probs=52.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      +..|||+||++|+++.|.++++++++++  ++.++.+|++++++++++|+|+++||+++.+
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~   63 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAING   63 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEETT
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccccc--cccccccccccchhhHHhcCceEeCEEEECC
Confidence            4449999999999999999999999987  6889999999999999999999999887643

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.80  E-value=4.3e-20  Score=107.03  Aligned_cols=62  Identities=21%  Similarity=0.446  Sum_probs=52.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+.+.|.++++++.+++   ..++++|++++++++++++|+++||+++|++|
T Consensus        20 ~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G   81 (103)
T d1syra_          20 LVIVDFFAEWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEVSEVTEKENITSMPTFKVYKNG   81 (103)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTTHHHHHHTTCCSSSEEEEEETT
T ss_pred             cEEEEEeCCcccCcccccccchhhhhcccc---eEEEeeccccCcceeeeeeeecceEEEEEECC
Confidence            689999999999999999999999999864   56778888877777777777777777777664

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.79  E-value=7.2e-20  Score=107.66  Aligned_cols=62  Identities=34%  Similarity=0.556  Sum_probs=48.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-cccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-HGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +++|+||++||++|+.+.|.++++++++++   +.++++|+++ +++++++|+|+++||+++|++|
T Consensus        27 ~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~---v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~~k~G   89 (112)
T d1f9ma_          27 PVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPTFKILKEN   89 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSSSSEEEEEETT
T ss_pred             EEEEEEEcCCCcchHHHHHHHhhhcccccc---ceeecccccccchhhHhheeeccCCEEEEEECC
Confidence            689999999999999999999999999873   6677777754 5566666666666666666553

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-19  Score=106.84  Aligned_cols=74  Identities=14%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             CeEEEEEEcC-------CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceee
Q psy3452           1 MFYSILFYSP-------GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         1 ~~v~v~F~a~-------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      .+|+|+|||+       ||++|+++.|.++++++.+++  ++.++.+|++..+...                        
T Consensus        22 k~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~--~~~~~~vdv~~~~~~~------------------------   75 (119)
T d1woua_          22 KTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWK------------------------   75 (119)
T ss_dssp             SEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHH------------------------
T ss_pred             CEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC--ceEEEEEECCCCcccc------------------------
Confidence            3789999995       999999999999999999887  6899999887654321                        


Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                            +.+..++++|+|+++||+++|++|+++
T Consensus        76 ------d~~~~l~~~~~V~~iPT~i~~~~g~~l  102 (119)
T d1woua_          76 ------DPNNDFRKNLKVTAVPTLLKYGTPQKL  102 (119)
T ss_dssp             ------CTTCHHHHHHCCCSSSEEEETTSSCEE
T ss_pred             ------hhhhhHHHhCCeEEEEEEEEEECCeEE
Confidence                  346677778888888888888777664

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=4.9e-19  Score=105.43  Aligned_cols=81  Identities=17%  Similarity=0.251  Sum_probs=60.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      .++|+||||||++|++  |.|+++++.+.... .+.+++||++...                                +.
T Consensus        21 ~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~--------------------------------~~   66 (122)
T d2c0ga2          21 YSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG--------------------------------EL   66 (122)
T ss_dssp             EEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST--------------------------------TC
T ss_pred             cEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc--------------------------------cc
Confidence            6899999999999994  99999998875422 4556666554432                                13


Q ss_pred             CccchhhhcCC--CCCCEEEEecCCccc-CCcCCCCCCC
Q psy3452          81 EHGPLCKEYDI--KGYPTFQYFHYFNKQ-SPSPYHNDYT  116 (116)
Q Consensus        81 ~~~~~~~~~~v--~~~Pt~~~~~~g~~~-~~~~y~g~~~  116 (116)
                      .+.+++++|+|  +++||+++|++|+.. ....|.|+.|
T Consensus        67 ~n~~l~~~~~i~~~~~PTi~~f~~g~~~~~~~~~~g~rt  105 (122)
T d2c0ga2          67 ENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVT  105 (122)
T ss_dssp             TTHHHHHHTTCCTTSCCEEEEESSSSSSEEECCTTSCCC
T ss_pred             cCHHHHHHhhcccCCCCcEEEEeCCcccccccccCCCCC
Confidence            57889999988  589999999887643 3467888764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.77  E-value=8.5e-19  Score=104.59  Aligned_cols=80  Identities=9%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      .++|+||||||++| +++|.+..+...+...                ++.+.  .             ..+.++++||+.
T Consensus        30 ~~~V~FyapwC~~~-~~~~~~~~~~~~~~~~----------------a~~~~--~-------------~~v~~a~Vd~~~   77 (124)
T d1a8ya1          30 VLALLYHEPPEDDK-ASQRQFEMEELILELA----------------AQVLE--D-------------KGVGFGLVDSEK   77 (124)
T ss_dssp             EEEEEEECCCCSSH-HHHHHHHHHHHHHHHH----------------HHHTG--G-------------GTEEEEEEETTT
T ss_pred             eEEEEEECCCccch-hhhhHHHHHHHHHHHH----------------HHHhc--c-------------CCeEEEEEEeec
Confidence            58999999999975 3445554444443210                00000  0             246778888888


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.+++++|+|+++||+.+|++|+.   +.|.|.++
T Consensus        78 ~~~l~~~~~I~~yPTi~~f~~g~~---~~y~G~r~  109 (124)
T d1a8ya1          78 DAAVAKKLGLTEEDSIYVFKEDEV---IEYDGEFS  109 (124)
T ss_dssp             SHHHHHTTTCCSTTCEEEEESSSE---EECCSCCS
T ss_pred             ccchhhccccccCCcEEEeccCcc---EEeeCCCC
Confidence            889999999999999999988765   57998764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.77  E-value=9.9e-20  Score=108.10  Aligned_cols=67  Identities=6%  Similarity=0.029  Sum_probs=45.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +|++.||++||++|+.+.|.++++++++++.                                      ++.++.+|+++
T Consensus        32 ~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~--------------------------------------~~~~~~Vd~d~   73 (119)
T d2es7a1          32 VILLSSDPRRTPEVSDNPVMIAELLREFPQF--------------------------------------DWQVAVADLEQ   73 (119)
T ss_dssp             EEEECCCSCC----CCHHHHHHHHHHTCTTS--------------------------------------CCEEEEECHHH
T ss_pred             EEEEeecCCCCccHHHHHHHHHHHHHhcCCC--------------------------------------ceEEEEEECCC
Confidence            6889999999999999999999999999763                                      23445556566


Q ss_pred             ccchhhhcCCCCCCEEEEecCCccc
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+++++|+|+++||+++|++|+.+
T Consensus        74 ~~~l~~~~~V~~~Pt~~~~~~G~~v   98 (119)
T d2es7a1          74 SEAIGDRFNVRRFPATLVFTDGKLR   98 (119)
T ss_dssp             HHHHHHTTTCCSSSEEEEESCC---
T ss_pred             CHHHHHhcCcCcceEEEEEEcCeEE
Confidence            6666666666667777666666543

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=4e-20  Score=111.59  Aligned_cols=62  Identities=6%  Similarity=-0.001  Sum_probs=41.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA   64 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   64 (116)
                      +|++.|||+||++|+++.|.++++++++++. .+.++++|++++++++++|+|+++||+++|+
T Consensus        38 vVll~f~a~wCp~C~~~~pvl~ela~~~~~~-~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~   99 (132)
T d2hfda1          38 VVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLVFT   99 (132)
T ss_dssp             EEEECSCCSCCSSSSCCTHHHHHHHTTCTTS-CEEEEEECHHHHHHHHHHHTCCSCCEEEEEE
T ss_pred             EEEEEeeCCCChhHHHHHHHHHHHHHHccCC-cceeEEEEecCCHHHHHhhccCcceeEEEEE
Confidence            6889999999999999999999999999873 2444444444444444443333333333333

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=3.8e-19  Score=103.47  Aligned_cols=64  Identities=19%  Similarity=0.249  Sum_probs=40.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccC--cceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDN--HKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ++++.|||+||++|+++.|.+++++...+..  ..+.+..+|++++++++++|+|+++||++++++
T Consensus        17 v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~   82 (107)
T d1a8la2          17 VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVN   82 (107)
T ss_dssp             EEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEET
T ss_pred             eEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeC
Confidence            3466799999999999999999998764321  145555555554444444444444444444433

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.75  E-value=4.3e-19  Score=108.47  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE---
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI---   77 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v---   77 (116)
                      ++++|+|||+||++|++++|.+.++.++++++..+.++.++.+.+.+...++-.+.                ....+   
T Consensus        29 K~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~----------------~~~~~~~~   92 (144)
T d1i5ga_          29 KTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKM----------------PWLALPFE   92 (144)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC----------------SSEECCTT
T ss_pred             CEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhC----------------CCCceeeE
Confidence            47999999999999999999999999999876578888888887764443322111                11111   


Q ss_pred             eccCccchhhhcCCCCCCEEEEecC-Cccc
Q psy3452          78 DCTEHGPLCKEYDIKGYPTFQYFHY-FNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~Pt~~~~~~-g~~~  106 (116)
                      +......+.+.|+|+++||++++++ ++++
T Consensus        93 d~~~~~~l~~~y~v~~iPt~~lid~~~G~v  122 (144)
T d1i5ga_          93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNI  122 (144)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             ChHHHHHHHHHCCCCCcCEEEEEeCCCCEE
Confidence            1112345788999999999999965 3444

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.7e-18  Score=102.12  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      ++++|+|||+||++|+.+.|.+.+..+..+....+....+|.+.+.                                 +
T Consensus        23 K~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------------------------~   69 (117)
T d2fwha1          23 KPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND---------------------------------A   69 (117)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC---------------------------------H
T ss_pred             CeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccch---------------------------------h
Confidence            4799999999999999999988443332222113555555544332                                 3


Q ss_pred             CccchhhhcCCCCCCEEEEecC-CcccCCcCCCCCC
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHY-FNKQSPSPYHNDY  115 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~-g~~~~~~~y~g~~  115 (116)
                      .+.+++++|+|.++||+++++. |+.+....+.|..
T Consensus        70 ~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~  105 (117)
T d2fwha1          70 QDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFM  105 (117)
T ss_dssp             HHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCC
T ss_pred             HHHHHHhhhehhhceEEEEEeCCCcEEecccccccC
Confidence            4567889999999999999954 4443334556654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.73  E-value=1.6e-18  Score=102.15  Aligned_cols=78  Identities=13%  Similarity=0.183  Sum_probs=57.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      +++|+||++||++|+++.|.+.++++.++.  .+.++  +++...+                               ...
T Consensus        28 ~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~--~v~~v--~~~~~~~-------------------------------~~~   72 (115)
T d1zmaa1          28 TATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFI--NSEEPSQ-------------------------------LND   72 (115)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEE--ETTCGGG-------------------------------HHH
T ss_pred             CEEEEEcCCCCccHHHHHHHHHHHHHHhhh--hhhhh--eeecccc-------------------------------ccc
Confidence            589999999999999999999999999865  44443  3332211                               123


Q ss_pred             ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      ..++.++|+|.++||++++++|+.+  ..+.|..+
T Consensus        73 ~~~~~~~~~V~~~PTli~~~~gk~~--~~~~G~~~  105 (115)
T d1zmaa1          73 LQAFRSRYGIPTVPGFVHITDGQIN--VRCDSSMS  105 (115)
T ss_dssp             HHHHHHHHTCCSSCEEEEEETTEEE--EECCTTCC
T ss_pred             ccccccccccccccEEEEEECCEEE--EEEcCCCC
Confidence            4567888999999999999887653  66677653

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.72  E-value=2.4e-18  Score=104.92  Aligned_cols=90  Identities=16%  Similarity=0.160  Sum_probs=65.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      ++++|+|||+||++|++.+|.++++.+++.....+.++.++.++..+..+++-.+.                ....+..+
T Consensus        29 K~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~----------------~~~~~~~~   92 (144)
T d1o73a_          29 KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKM----------------PWLALPFD   92 (144)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC----------------SSEECCTT
T ss_pred             CEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhc----------------cccceeee
Confidence            47999999999999999999999999999665468889888887654443322111                01112222


Q ss_pred             ---CccchhhhcCCCCCCEEEEecC-Cccc
Q psy3452          81 ---EHGPLCKEYDIKGYPTFQYFHY-FNKQ  106 (116)
Q Consensus        81 ---~~~~~~~~~~v~~~Pt~~~~~~-g~~~  106 (116)
                         ...++.+.|+|+++||+++++. ++++
T Consensus        93 ~~~~~~~l~~~y~v~~~Pt~~lID~~~G~I  122 (144)
T d1o73a_          93 QRSTVSELGKTFGVESIPTLITINADTGAI  122 (144)
T ss_dssp             CHHHHHHHHHHHTCCSSSEEEEEETTTCCE
T ss_pred             ccchHHHHHHHcCCCcCCEEEEEECCCCEE
Confidence               2345889999999999999975 3554

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=2.5e-17  Score=98.99  Aligned_cols=85  Identities=13%  Similarity=0.367  Sum_probs=64.5

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++||++|++.+|.+.++.+++++   +.++.++.....    ...+++++..+|.+                
T Consensus        26 k~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l----------------   86 (134)
T d1zzoa1          26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLDQVPAMQEFVNKYPVKTFTQL----------------   86 (134)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHTTCTTSEEE----------------
T ss_pred             CEEEEEecccccCcccccchhhHHHHhhhcc---cccccccccccchhHHHHHHhcCCcceeEE----------------
Confidence            4789999999999999999999999999875   444555544332    34456666554422                


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                        .+.+.++.+.|++.++|+++++++++++
T Consensus        87 --~D~~~~~~~~~~v~~~P~~~iiD~~G~i  114 (134)
T d1zzoa1          87 --ADTDGSVWANFGVTQQPAYAFVDPHGNV  114 (134)
T ss_dssp             --ECTTCHHHHHTTCCSSSEEEEECTTCCE
T ss_pred             --eeccchHHHhcCCCccCeEEEECCCCeE
Confidence              2567789999999999999999777665

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.7e-18  Score=103.68  Aligned_cols=83  Identities=8%  Similarity=0.010  Sum_probs=58.1

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+|||+||++|++.+|.++++++.     .+.++.++.+......    .+.+....                  .
T Consensus        21 k~vvl~FwatWC~pC~~e~p~l~~~~~~-----~~~vi~i~~~~~~~~~~~~~~~~~~~~~------------------~   77 (136)
T d1z5ye1          21 KPVLLNVWATWCPTSRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYA------------------L   77 (136)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCS------------------E
T ss_pred             CEEEEEEEcCcCCCcCccccchhhhhhh-----hhhhcccccccchhhhHHHHHHcCCccc------------------e
Confidence            4799999999999999999999988653     3455555555443222    22222221                  1


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +..+.+..+.+.|++.++||++++++++++
T Consensus        78 ~~~d~~~~~~~~~~v~~~P~~~liD~~G~i  107 (136)
T d1z5ye1          78 SLFDGDGMLGLDLGVYGAPETFLIDGNGII  107 (136)
T ss_dssp             EEEESSCHHHHHHTCCSBSEEEEECTTSCE
T ss_pred             eecccchhHHHhcccCCcceEEEEcCCCEE
Confidence            223567789999999999999999666654

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=2.1e-17  Score=94.46  Aligned_cols=60  Identities=20%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      +.++.|+++||++|+.+.|.++++++.++   ++.+..+|++++++++++|+|+++||+++ ++
T Consensus        17 ~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~~l~~~~~I~~vPt~~~-ng   76 (96)
T d1hyua4          17 FEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV-NG   76 (96)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE-TT
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccchHHHhhcccccccEEEE-CC
Confidence            35778999999999999999999998765   68888999988888888888888888754 44

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.69  E-value=1e-16  Score=97.19  Aligned_cols=94  Identities=14%  Similarity=0.165  Sum_probs=65.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc------c---cccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP------L---CKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~------~---~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      ++++|+|||+||++|++.+|.+.++.++++..+ +.++.+..+....      .   ....+...+|.+           
T Consensus        24 k~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   91 (143)
T d2fy6a1          24 KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS-ANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVV-----------   91 (143)
T ss_dssp             SCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT-SEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEE-----------
T ss_pred             CEEEEEEECCCCccccccCcchhhhhhhhccCC-cEEEEEeeeecccccchhhhhhhhhhcCCcccccc-----------
Confidence            478999999999999999999999999988763 6666666543211      1   122233333322           


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                             .+.+..+++.|+++++|+++++++.+++. ..+.|.
T Consensus        92 -------~D~~~~~~~~~~v~~~P~~~liD~~G~i~-~~~~G~  126 (143)
T d2fy6a1          92 -------TDNGGTIAQSLNISVYPSWALIGKDGDVQ-RIVKGS  126 (143)
T ss_dssp             -------ECTTCHHHHHTTCCSSSEEEEECTTSCEE-EEEESC
T ss_pred             -------cccchHHHHHcCCCccCEEEEECCCCEEE-EEEECC
Confidence                   25678899999999999999996665542 234444

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=2.9e-17  Score=104.17  Aligned_cols=90  Identities=24%  Similarity=0.359  Sum_probs=66.3

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-----------ccccccCCccccceEEEcCceeee
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-----------GPLCKEYDIKGYPTFHHLALTIMI   69 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~~~~v~f   69 (116)
                      ++++|+||++||++|++.+|.+.++.++|++  ++.++.++....           ...++++++. +|           
T Consensus        33 k~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~-~p-----------   98 (187)
T d2cvba1          33 PLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIF-FP-----------   98 (187)
T ss_dssp             SEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCC-SC-----------
T ss_pred             CeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHHHHHHHHHhCCc-ce-----------
Confidence            4789999999999999999999999999987  577777764321           1223333332 22           


Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                             +-.+.+.+++++|++.+.|+++++++.++   +.|.|.
T Consensus        99 -------~l~D~~~~~~~~~~v~~~P~~~liD~~G~---i~y~G~  133 (187)
T d2cvba1          99 -------YLLDETQEVAKAYRALRTPEVFLFDERRL---LRYHGR  133 (187)
T ss_dssp             -------EEECSSSHHHHHTTCCEESEEEEECTTCB---EEEEEC
T ss_pred             -------eeechhhhhcccccccceeeEEEEcCCCe---EEEEee
Confidence                   12267889999999999999999977666   345554

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=4.7e-16  Score=94.40  Aligned_cols=85  Identities=21%  Similarity=0.353  Sum_probs=63.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---------ccccccCCccccceEEEcCceeeece
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---------GPLCKEYDIKGYPTFHHLALTIMIIR   71 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---------~~~~~~~~v~~~Pt~~~~~~~v~f~~   71 (116)
                      ++++|+||++||++|++..|.+.++.+.+++  .+.++.++.+..         .+..+++++ .+|.+           
T Consensus        30 k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~p~~-----------   95 (143)
T d2b5xa1          30 KPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDI-TQPIF-----------   95 (143)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTC-CSCEE-----------
T ss_pred             CEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhhhhhHHHhhcc-Ccccc-----------
Confidence            3689999999999999999999999999987  566666665322         123445555 33422           


Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                             .+.+..+.+.|+++++|+++++++.+++
T Consensus        96 -------~D~~~~~~~~~~v~~~P~~~~id~~G~i  123 (143)
T d2b5xa1          96 -------VDSDHALTDAFENEYVPAYYVFDKTGQL  123 (143)
T ss_dssp             -------ECSSCHHHHHTCCCCSSEEEEECTTCBE
T ss_pred             -------ccCccchHHHcCCCcCCEEEEECCCCEE
Confidence                   1567789999999999999999665553

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.66  E-value=4.6e-17  Score=98.90  Aligned_cols=92  Identities=12%  Similarity=0.158  Sum_probs=64.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc-ccceEEEcCceeeeceeeEEEEec
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK-GYPTFHHLALTIMIIRLALAAIDC   79 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~~v~~   79 (116)
                      ++++|+||++||++|+..+|.+.++.++++....+.++.++.+.+.+....+-.. ..+              .+.....
T Consensus        27 K~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~--------------~~~~~~~   92 (144)
T d1o8xa_          27 KLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWL--------------AVPFAQS   92 (144)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSE--------------ECCGGGH
T ss_pred             CEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhcccc--------------ceeeecc
Confidence            4789999999999999999999999999977656888888877654333221111 100              0000111


Q ss_pred             cCccchhhhcCCCCCCEEEEecC-Cccc
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHY-FNKQ  106 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~-g~~~  106 (116)
                      +...++.+.|+|+++||+++++. +++|
T Consensus        93 d~~~~l~~~y~v~~~Pt~~liD~~~G~V  120 (144)
T d1o8xa_          93 EAVQKLSKHFNVESIPTLIGVDADSGDV  120 (144)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             cchhhHHHHcCCCcCCEEEEEeCCCCEE
Confidence            34567899999999999999964 4554

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=1.5e-16  Score=95.74  Aligned_cols=84  Identities=15%  Similarity=0.375  Sum_probs=63.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++|+||++||++|++..|.++++.+.++   .+.++.++.+.+..    .++++++. +|                  
T Consensus        25 k~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~v~~~~~~~~~~~~~~~~~~~-~p------------------   82 (134)
T d1lu4a_          25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLN-FT------------------   82 (134)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCC-SE------------------
T ss_pred             CEEEEEEeecccCCceecchhHHHHhhhhc---cccccccccccchhhhhhhhhhhccc-cc------------------
Confidence            478999999999999999999999998875   47777787765543    33444432 22                  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+..+++.|+++++|+++++++++++
T Consensus        83 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  112 (134)
T d1lu4a_          83 NLNDADGVIWARYNVPWQPAFVFYRADGTS  112 (134)
T ss_dssp             EEECTTSHHHHHTTCCSSSEEEEECTTSCE
T ss_pred             eeeCchHHHHHHcCCCcCCEEEEEeCCCeE
Confidence            112567789999999999999999766553

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.5e-16  Score=94.41  Aligned_cols=81  Identities=21%  Similarity=0.295  Sum_probs=63.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE   81 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~   81 (116)
                      .++|+||++||.+|.  .|.++++++.+.+.......                                .+.++.+|+..
T Consensus        23 ~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~--------------------------------~V~~~~vd~~~   68 (122)
T d1g7ea_          23 FVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVA--------------------------------EVGISDYGDKL   68 (122)
T ss_dssp             EEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEE--------------------------------EEESCCTTSCH
T ss_pred             eEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhh--------------------------------ccceeeccccc
Confidence            689999999998886  48999999999764432222                                23445567778


Q ss_pred             ccchhhhc--CCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          82 HGPLCKEY--DIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        82 ~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      +.++++++  +|+++||+.+|++|++..+..|.|+.|
T Consensus        69 n~~l~~~~~~~I~~yPTi~~f~~G~~~~~~~y~G~rt  105 (122)
T d1g7ea_          69 NMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVK  105 (122)
T ss_dssp             HHHHHHHHTCSSSSCEEEEEEESSCCCCCEEEESCCC
T ss_pred             cHHHHHhhcccccCCCeEEEEecCcccCceecCCCCC
Confidence            88899885  578999999999998777889999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.64  E-value=5.6e-17  Score=98.65  Aligned_cols=84  Identities=12%  Similarity=0.154  Sum_probs=58.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|+||++||++|+..+|.+.++.+.++    +.+..+..+...    ....+++....+                  
T Consensus        32 K~vll~fwa~wC~~C~~~~p~l~~l~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------   89 (144)
T d1knga_          32 KVSLVNVWASWCVPCHDEAPLLTELGKDKR----FQLVGINYKDAADNARRFLGRYGNPFGR------------------   89 (144)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHTTCTT----SEEEEEEESCCHHHHHHHHHHHCCCCSE------------------
T ss_pred             CEEEEEeeccccccccccCchhhhhhhccC----ceeEEEEeeechHHHHHHHHHcCCcccc------------------
Confidence            378999999999999999999998876653    444444444332    223333333311                  


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.++.+.|++.++||+++++..+++
T Consensus        90 ~~~d~~~~~~~~~~v~~~P~~~liD~~G~i  119 (144)
T d1knga_          90 VGVDANGRASIEWGVYGVPETFVVGREGTI  119 (144)
T ss_dssp             EEEETTSHHHHHTTCCSSCEEEEECTTSBE
T ss_pred             ccccccchhhhhcCccccceEEEEcCCCeE
Confidence            222457789999999999999999766554

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=1e-14  Score=87.73  Aligned_cols=86  Identities=21%  Similarity=0.320  Sum_probs=66.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++|.||++||++|+..++.+.++.+.+++. .+.++.++.+++.    +.++++++. +|.                 
T Consensus        26 k~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~-~~~-----------------   86 (137)
T d1st9a_          26 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVN-FPV-----------------   86 (137)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCC-SCE-----------------
T ss_pred             CEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCC-ccc-----------------
Confidence            36899999999999999999999999999875 4888888776554    233445543 331                 


Q ss_pred             EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                       -.+.+..+++.|++.++|++++++.++++
T Consensus        87 -~~d~~~~~~~~~~v~~~P~~~liD~~G~i  115 (137)
T d1st9a_          87 -VLDTDRQVLDAYDVSPLPTTFLINPEGKV  115 (137)
T ss_dssp             -EEETTSHHHHHTTCCSSCEEEEECTTSEE
T ss_pred             -cccccchhhhhhhccccceEEEECCCCEE
Confidence             12456789999999999999999776654

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4.6e-15  Score=95.86  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=55.4

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCcee
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTI   67 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v   67 (116)
                      +|+|+||++||++|+.+.|.+.++++.++   .+.|++++.+..+ +.++|+++.+||+++|++|.
T Consensus       122 ~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~---~vkF~ki~~~~~~-~~~~~~i~~lPtl~~yk~G~  183 (217)
T d2trcp_         122 TIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRASNTG-AGDRFSSDVLPTLLVYKGGE  183 (217)
T ss_dssp             EEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHHHHT-CSTTSCGGGCSEEEEEETTE
T ss_pred             eEEEEEEcCCCCChhhhhhhHHHHhhhcc---cceEEEEccccch-hHHhCCCCCCCeEEEEECCE
Confidence            68999999999999999999999999997   5899999988765 56789999999999998863

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.6e-14  Score=85.80  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=43.2

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC-CccccceEEEcC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY-DIKGYPTFHHLA   64 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~   64 (116)
                      ++++|+|||+||++|+++.|.+.+..+..+...++..+.+|.++.+.....+ ....+||+++++
T Consensus        26 Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d   90 (135)
T d1sena_          26 LPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLD   90 (135)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEEC
T ss_pred             CcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEEC
Confidence            4799999999999999999998766544332226778888877665544332 222345555443

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=7.7e-14  Score=79.91  Aligned_cols=57  Identities=21%  Similarity=0.352  Sum_probs=49.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      |++++.||++||++|..+.+.++++...+    ...++.+|.++++++.++|+++ +|++++
T Consensus        16 ~p~i~lft~~~C~~C~~a~~~L~~~~~~~----~~~~v~vd~~~~~~l~~~y~~~-VPvl~i   72 (100)
T d1wjka_          16 LPVLTLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKFD-IPVFHL   72 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSSSS----EEEEEETTSSTTHHHHHHSSSS-CSEEEE
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHhhhhc----ceEEEecccccCHHHHHHhccc-CCceee
Confidence            78999999999999999999999887666    4667888888999999999987 897764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.35  E-value=3.4e-13  Score=84.10  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--Cc---ccccccCCccccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EH---GPLCKEYDIKGYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++|+||++||++|+...+.+.++.+.+.+.. +.++.+..+  ..   .+..+++++...+.+               
T Consensus        57 K~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~-~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~---------------  120 (176)
T d1jfua_          57 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPN-FEVVAINIDTRDPEKPKTFLKEANLTRLGYF---------------  120 (176)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT-EEEEEEECCCSCTTHHHHHHHHTTCCTTCCE---------------
T ss_pred             CEEEEEeccCcccchHHHHHhhhhccccccccc-cccccccccccchhhhhhhHhhhCCcceeee---------------
Confidence            479999999999999999999999999987764 444444443  22   234556665443211               


Q ss_pred             EEeccCcc----chhhhcCCCCCCEEEEecCCccc
Q psy3452          76 AIDCTEHG----PLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                        . +...    ++...+++.++|+++++++++++
T Consensus       121 --~-d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I  152 (176)
T d1jfua_         121 --N-DQKAKVFQDLKAIGRALGMPTSVLVDPQGCE  152 (176)
T ss_dssp             --E-CTTCHHHHHHHTTTCCSSSSEEEEECTTSBE
T ss_pred             --e-cchhHHHHHHhhhccCCCCCeEEEEcCCCEE
Confidence              1 2222    34456789999999999776654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.29  E-value=1.4e-12  Score=80.73  Aligned_cols=61  Identities=13%  Similarity=0.039  Sum_probs=49.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc---ccceEEEcCc
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK---GYPTFHHLAL   65 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~~~~~~   65 (116)
                      ++++.||++||++|++..|.++++++.++   ++.+..++.+.+++...++...   .+|.++++++
T Consensus        56 ~~~l~~~~tWC~~C~~~~P~l~~l~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~  119 (166)
T d1z6na1          56 YRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE  119 (166)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred             eEEEEEEeCcCccHHHHHHHHHHHHHHCC---CCcEEEEECccCHHHHHHHHHhccccccceeecCc
Confidence            56889999999999999999999999876   5777888888888888887444   5666554433

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.9e-12  Score=76.55  Aligned_cols=61  Identities=8%  Similarity=0.131  Sum_probs=39.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCc--ccccccCCccccceEEEc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEH--GPLCKEYDIKGYPTFHHL   63 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~   63 (116)
                      +++||+|+++||++|+.+....   .++.+.++.  ++.+..+|.+..  ..++++|++.++|+++++
T Consensus        43 K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~i  108 (147)
T d2dlxa1          43 KWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSIL  108 (147)
T ss_dssp             CEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEE
T ss_pred             CcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchhhhhhhhheecCceeEEEEE
Confidence            4799999999999999997755   555555654  577777765544  233344444444444433

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.99  E-value=1.3e-10  Score=70.84  Aligned_cols=86  Identities=10%  Similarity=0.064  Sum_probs=60.1

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      +++|.|| ++||++|...++.+.++.+.+++.+ +.++.+..+....   .+++.++..                   .+
T Consensus        32 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d~~~~~~~~~~~~~~~~-------------------~~   91 (160)
T d2cx4a1          32 PAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN-AEVLAISVDSPWCLKKFKDENRLAF-------------------NL   91 (160)
T ss_dssp             CEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC-CEEEEEESSCHHHHHHHHHHHTCSS-------------------EE
T ss_pred             EEEEEecccccCCchhhhhhhhhcccccccccc-cccccccccchhhhhhhcccceeeE-------------------EE
Confidence            5788888 9999999999999999988888764 6677776654332   222322211                   12


Q ss_pred             eccCccchhhhcCC----------CCCCEEEEecCCcccC
Q psy3452          78 DCTEHGPLCKEYDI----------KGYPTFQYFHYFNKQS  107 (116)
Q Consensus        78 ~~~~~~~~~~~~~v----------~~~Pt~~~~~~g~~~~  107 (116)
                      -++.+..+++.|++          ...|++++++++++|.
T Consensus        92 l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~  131 (160)
T d2cx4a1          92 LSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVA  131 (160)
T ss_dssp             EECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEE
T ss_pred             eecCCcchHHHcCccccccccccccceeeEEEEcCCCEEE
Confidence            23567788899987          3578999997666653

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=7.8e-10  Score=68.18  Aligned_cols=88  Identities=8%  Similarity=0.056  Sum_probs=64.5

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCcc-ccceEEEcCceeeeceeeEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIK-GYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      +++|.|| ++||+.|...++.+.+..+++++.+ +.++.++.+...   ..++.++.. ..|                ..
T Consensus        46 ~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g-~~vv~is~d~~~~~~~~~~~~~~~~~~~----------------f~  108 (169)
T d2bmxa1          46 WRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD-AQILGVSIDSEFAHFQWRAQHNDLKTLP----------------FP  108 (169)
T ss_dssp             EEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT-EEEEEEESSCHHHHHHHHHHCTTGGGCC----------------SC
T ss_pred             eEEEEEecCCCCccccccccccccccccccccC-cceeeccccchhhhhhhcccccccccce----------------EE
Confidence            5788888 9999999999999999999998864 777888777543   333444322 111                11


Q ss_pred             EeccCccchhhhcCC-----CCCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDI-----KGYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v-----~~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.+++++|||     ...|+.+++++.++|
T Consensus       109 ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I  143 (169)
T d2bmxa1         109 MLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEI  143 (169)
T ss_dssp             EEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBE
T ss_pred             EEeccHHHHHHHcCCCccCCccceeEEEEcCCCEE
Confidence            223678899999998     678999999766655

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=3.8e-09  Score=64.32  Aligned_cols=82  Identities=10%  Similarity=0.102  Sum_probs=57.7

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++++.|| ++||+.|...++.+.+..+++.+  ...++.++.+...   ++++++++. +|                  +
T Consensus        35 ~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~d~~~~~~~f~~~~~l~-f~------------------~   93 (156)
T d2a4va1          35 VVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSADSVTSQKKFQSKQNLP-YH------------------L   93 (156)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHHHTCS-SE------------------E
T ss_pred             EEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeeccchhhhHHhhhcccCcc-ce------------------e
Confidence            3555556 89999999999999999999976  4556677766443   445555542 23                  2


Q ss_pred             eccCccchhhhcCCCCCC------EEEEecCCc
Q psy3452          78 DCTEHGPLCKEYDIKGYP------TFQYFHYFN  104 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~~P------t~~~~~~g~  104 (116)
                      -.+.+.+++++|++...|      +++++.+|+
T Consensus        94 L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~  126 (156)
T d2a4va1          94 LSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGK  126 (156)
T ss_dssp             EECTTCHHHHHHTCBSSSSSCBCCEEEEEETTE
T ss_pred             ccchHHHHHHHcCCCccccCCeeEEEEEEECCe
Confidence            236788999999987776      455666664

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.82  E-value=2e-09  Score=66.25  Aligned_cols=89  Identities=10%  Similarity=0.048  Sum_probs=64.1

Q ss_pred             CeEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCcc-ccceEEEcCceeeeceeeEE
Q psy3452           1 MFYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIK-GYPTFHHLALTIMIIRLALA   75 (116)
Q Consensus         1 ~~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~   75 (116)
                      ++++|.||.. ||+.|...++.+.+..+++.+. .+.++.++.+...   ..++++... ..|                .
T Consensus        32 K~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~-g~~vv~IS~D~~~~~~~~~~~~~~~~~~~----------------f   94 (166)
T d1we0a1          32 KWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIE----------------Y   94 (166)
T ss_dssp             SEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCC----------------S
T ss_pred             CeEEEEEecccCCcHHHHHHHHHHHHHHhhccc-ceEEEecccccHHHHHHHhhhhhhhcccc----------------c
Confidence            3688899955 9999999999999999999876 4788888877643   233333211 111                2


Q ss_pred             EEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          76 AIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        76 ~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      .+-.+.+.+++++|++.      ..|+.+++++.++|
T Consensus        95 pll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I  131 (166)
T d1we0a1          95 IMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVI  131 (166)
T ss_dssp             EEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             ccccCcccHHHHHhCCCccccCcccceEEEECCCCcE
Confidence            33447788999999984      56788999776665

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.82  E-value=3.1e-09  Score=65.26  Aligned_cols=89  Identities=9%  Similarity=0.156  Sum_probs=62.7

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCC----ccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYD----IKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~----v~~~Pt~~~~~~~v~f~~~   72 (116)
                      .+++|.|| ++||+.|....+.+.+..+++.+. .+.++.++.+....   .+....    ....|              
T Consensus        34 K~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~--------------   98 (167)
T d1e2ya_          34 KYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI-NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMA--------------   98 (167)
T ss_dssp             SEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCCCS--------------
T ss_pred             CeEEEEEcccccccccchhhHHHHHHHHHhhcC-ceEEEeecCCcHHhHHHHHhhHHHhccccccc--------------
Confidence            36899999 999999999999999999999886 47778887775432   111111    11111              


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                        ..+..+.+..+++.|++.      ..|+++++++.++|
T Consensus        99 --~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~I  136 (167)
T d1e2ya_          99 --IPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKL  136 (167)
T ss_dssp             --SCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBE
T ss_pred             --ccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEE
Confidence              223346788899999883      46889999766655

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=8.3e-09  Score=63.25  Aligned_cols=85  Identities=8%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++++.|| +.||+.|...++.++++..++.   .+.++.+..+....   .++++++.. |                ..+
T Consensus        46 ~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~~~~~~~~~~~~~~~~-~----------------~~~  105 (164)
T d1qxha_          46 RKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISADLPFAQSRFCGAEGLNN-V----------------ITL  105 (164)
T ss_dssp             EEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESSCHHHHTTCCSSTTCTT-E----------------EEE
T ss_pred             eEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcCCHHHHHHHHHHhCCCc-c----------------eee
Confidence            5777777 7799999999999998887765   47777777765433   333333321 1                223


Q ss_pred             eccCccchhhhcCCC---------CCCEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIK---------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~---------~~Pt~~~~~~g~~~  106 (116)
                      +.+.+.++.+.||+.         ..|+++++++.++|
T Consensus       106 ~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I  143 (164)
T d1qxha_         106 STFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNV  143 (164)
T ss_dssp             ECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBE
T ss_pred             ccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEE
Confidence            446677888888873         24789999776665

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=2.7e-09  Score=64.54  Aligned_cols=87  Identities=13%  Similarity=0.094  Sum_probs=59.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEEe
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAID   78 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~   78 (116)
                      ++++.|+++||+.|....+.+.+..+++.+. .+.++.++.+...   ..++++++.. |                ...+
T Consensus        32 vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~-~~~vi~vs~d~~~~~~~~~~~~~~~~-~----------------~l~~   93 (153)
T d1xvwa1          32 VLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGPPPTHKIWATQSGFTF-P----------------LLSD   93 (153)
T ss_dssp             EEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCCHHHHHHHHHHHTCCS-C----------------EEEC
T ss_pred             EEEEecccccccchhhhhhhhhhhhhhhccc-ccccccccchhhhHHHHHhhhhccce-e----------------EEec
Confidence            3455566999999999999999998888766 4778888776543   3344444322 1                1124


Q ss_pred             ccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          79 CTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        79 ~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      .+.+.++++.|++.      ..|+.+++++.++|
T Consensus        94 ~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I  127 (153)
T d1xvwa1          94 FWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGII  127 (153)
T ss_dssp             TTTTTHHHHHTTCEETTTTEECSEEEEECTTSBE
T ss_pred             ccccchhHHHhhhhhhccCceeeeEEEECCCCEE
Confidence            45677899999874      34678889666665

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=7.8e-11  Score=69.23  Aligned_cols=58  Identities=17%  Similarity=0.230  Sum_probs=51.4

Q ss_pred             EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC--CccccceEEEcCce
Q psy3452           7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY--DIKGYPTFHHLALT   66 (116)
Q Consensus         7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--~v~~~Pt~~~~~~~   66 (116)
                      .|++||++|+++++.+++.++.+.+  .+.+.++|++.++.+++++  +|+++||+++|++|
T Consensus        33 c~~~~~~~~~~la~~~~~~~~~~~~--~V~~~~vd~~~n~~l~~~~~~~I~~yPTi~~f~~G   92 (122)
T d1g7ea_          33 PYGEKQDEFKRLAENSASSDDLLVA--EVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDG   92 (122)
T ss_dssp             CCTTTTHHHHHHHHHGGGCSSEEEE--EEESCCTTSCHHHHHHHHHTCSSSSCEEEEEEESS
T ss_pred             cCcccCHHHHHHHHHHHHHHHHhhh--ccceeeccccccHHHHHhhcccccCCCeEEEEecC
Confidence            3789999999999999998887776  7999999999999999875  57799999999875

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.70  E-value=2.1e-08  Score=63.09  Aligned_cols=89  Identities=10%  Similarity=0.090  Sum_probs=64.8

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----CccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      +++++.|| ++||+.|....+.+.++.+++... ++.++.++.+....   .++..    ++...|              
T Consensus        34 K~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~-g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~--------------   98 (194)
T d1uula_          34 KWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMN--------------   98 (194)
T ss_dssp             SEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCS--------------
T ss_pred             CeEEEEEEeCCccccchhhhhHHHhhhhhhccC-ceEEEEEecCchhhhhhhhhhhhhhccccCCC--------------
Confidence            36889999 999999999999999999999876 58888888775432   22221    222222              


Q ss_pred             eEEEEeccCccchhhhcCC------CCCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDI------KGYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v------~~~Pt~~~~~~g~~~  106 (116)
                        ..+-.+.+.++++.|++      ...|+.+++++.++|
T Consensus        99 --fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I  136 (194)
T d1uula_          99 --IPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNL  136 (194)
T ss_dssp             --SCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBE
T ss_pred             --cceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeE
Confidence              12334788999999998      457889999777665

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.65  E-value=2e-08  Score=61.88  Aligned_cols=88  Identities=8%  Similarity=0.049  Sum_probs=63.4

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----CccccceEEEcCceeeeceee
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      ++++.|| +.||+.|....+.+++..+.+.+. .+.++.++.+....   .++++    .....|               
T Consensus        35 ~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~---------------   98 (170)
T d1zofa1          35 GVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVS---------------   98 (170)
T ss_dssp             EEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCS---------------
T ss_pred             EEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccchhhHHHHHhhhhhcccccCcc---------------
Confidence            6889999 999999999999999999999776 47888888776432   22222    111211               


Q ss_pred             EEEEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~  106 (116)
                       ..+-.+.+.++.++|++.     ..|+.+++++.++|
T Consensus        99 -~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I  135 (170)
T d1zofa1          99 -FPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKV  135 (170)
T ss_dssp             -SCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEE
T ss_pred             -cccccccccHHHHHcCCCccccceeEEEEEEcCCCeE
Confidence             222346788999999984     56889999776665

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.62  E-value=4e-08  Score=63.56  Aligned_cols=88  Identities=7%  Similarity=-0.020  Sum_probs=63.4

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---cccc---CCccccceEEEcCceeeeceeeE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKE---YDIKGYPTFHHLALTIMIIRLAL   74 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~---~~v~~~Pt~~~~~~~v~f~~~~~   74 (116)
                      ++++.|| ++||+.|....+.+.+..+++... ++.++.++++....   .++.   .+...+               . 
T Consensus        31 ~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l---------------~-   93 (237)
T d2zcta1          31 WFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRI---------------P-   93 (237)
T ss_dssp             EEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCC---------------C-
T ss_pred             EEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhccccc---------------c-
Confidence            5778888 999999999999999999999877 47888888775432   1111   111111               1 


Q ss_pred             EEEeccCccchhhhcCC-------CCCCEEEEecCCccc
Q psy3452          75 AAIDCTEHGPLCKEYDI-------KGYPTFQYFHYFNKQ  106 (116)
Q Consensus        75 ~~v~~~~~~~~~~~~~v-------~~~Pt~~~~~~g~~~  106 (116)
                      ..+-++.+.++++.||+       ...|+++++++.++|
T Consensus        94 fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~I  132 (237)
T d2zcta1          94 FPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVI  132 (237)
T ss_dssp             SCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBE
T ss_pred             cccccCcchHHHHHcCCccccccccceeeeEEECCCCEE
Confidence            22344788999999998       568999999777665

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.52  E-value=9.5e-08  Score=58.09  Aligned_cols=93  Identities=11%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      +++++.|| +.||+.|...++.+++..+++... ...++.+..+....   .++........           .++. ..
T Consensus        27 k~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d~~~~~~~~~~~~~~~~~~-----------~~~~-f~   93 (158)
T d1zyea1          27 KYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGL-----------GHMN-IA   93 (158)
T ss_dssp             SEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCC-----------CSCS-SE
T ss_pred             CeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCcCHHHHHHHHhhhHhhccc-----------cccc-cc
Confidence            36899999 999999999999999999999776 47777777765432   22222110000           0111 12


Q ss_pred             EeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+..+++.|++.      +.|+.+++++.++|
T Consensus        94 llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I  129 (158)
T d1zyea1          94 LLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVI  129 (158)
T ss_dssp             EEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             cccccccHHHHHHHhccccCCccccEEEEECCCCEE
Confidence            3336778899999886      35678888666665

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.47  E-value=2.7e-07  Score=57.55  Aligned_cols=90  Identities=11%  Similarity=0.048  Sum_probs=65.4

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      ++++++|| +.||+.|....+.+++..+++.+. ++.++.++.+...   ..+++++-..              .+. ..
T Consensus        31 k~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~--------------~~~-fp   94 (186)
T d1n8ja_          31 RWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIA--------------KIK-YA   94 (186)
T ss_dssp             SEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGG--------------GCC-SE
T ss_pred             CeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccc--------------ccc-cc
Confidence            36889999 899999999999999999999876 5788888877643   3444443110              111 22


Q ss_pred             EeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          77 IDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        77 v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                      +-.+.+.+++++|++.      ..|+.+++++.++|
T Consensus        95 llsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~I  130 (186)
T d1n8ja_          95 MIGDPTGALTRNFDNMREDEGLADRATFVVDPQGII  130 (186)
T ss_dssp             EEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             ccccHHHHHHHHhCCCcccCCcceeeEEEECchheE
Confidence            3447899999999984      45889999776665

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.46  E-value=4.6e-08  Score=55.67  Aligned_cols=44  Identities=14%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+.++.+|++.+.+++++|+|+++||+++|++|+.+  ..|.|..
T Consensus        51 ~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~~~g~~v--~~~~G~~   94 (108)
T d1thxa_          51 DRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQIL--DSTEGVI   94 (108)
T ss_dssp             TTCEEEEEESTTCHHHHHHTTCCSSSEEEEEETTEEE--EEEESCC
T ss_pred             CcceeceecccccHHHHHHhcccCCCEEEEEECCEEE--EEEeCCC
Confidence            4578899999999999999999999999999988764  4455543

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.42  E-value=6.9e-08  Score=54.82  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      +.+.++.+|++.+.+++++|+|+++||+++|++|+.+  ..+.|..
T Consensus        50 ~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v--~~~~G~~   93 (107)
T d1dbya_          50 DKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC--ETIIGAV   93 (107)
T ss_dssp             TTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE--EEEESCC
T ss_pred             ccceEEEEecccchhHHHHhcccceEEEEEEECCeEE--EEEeCCC
Confidence            4678899999999999999999999999999988765  4455543

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.2e-07  Score=56.68  Aligned_cols=89  Identities=11%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cc----cccCCccccceEEEcCceeeecee
Q psy3452           1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PL----CKEYDIKGYPTFHHLALTIMIIRL   72 (116)
Q Consensus         1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~----~~~~~v~~~Pt~~~~~~~v~f~~~   72 (116)
                      .++++.|| +.||+.|......+++..+++... .+.++.+.++...   +.    .+..++..+|              
T Consensus        35 k~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~--------------   99 (197)
T d1qmva_          35 KYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL-GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLN--------------   99 (197)
T ss_dssp             SEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCS--------------
T ss_pred             CeEEEEEecccccccchhhhHHHHHHHHHhccC-CcEEEEEecCCHHHHHhhhcchhhhcCcCCCc--------------
Confidence            36788898 999999999999999999999877 4888888877542   11    2222333322              


Q ss_pred             eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452          73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~  106 (116)
                        ..+-++.+.++++.|++-      .+|+.+++++.++|
T Consensus       100 --fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~I  137 (197)
T d1qmva_         100 --IPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVL  137 (197)
T ss_dssp             --SCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBE
T ss_pred             --cceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcE
Confidence              123447889999999984      46889999776664

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.40  E-value=7.9e-08  Score=54.39  Aligned_cols=43  Identities=14%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      +.+.++.+|++.+..++++|+|.++||+++|++|+.+  ..+.|.
T Consensus        48 ~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G~~~--~~~~G~   90 (105)
T d1nw2a_          48 DKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPV--KQLIGY   90 (105)
T ss_dssp             TTCEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEE--EEEESC
T ss_pred             CceEEEEEECCCCcccHHHCCcceeeEEEEEECCEEE--EEEECC
Confidence            4688999999999999999999999999999998765  344454

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.38  E-value=7.8e-08  Score=54.29  Aligned_cols=43  Identities=16%  Similarity=0.356  Sum_probs=36.1

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      +...++.++++.+.+++++|+|+++||+++|++|+.+  ..+.|.
T Consensus        48 ~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G~~v--~~~~G~   90 (104)
T d1fb6a_          48 GKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERK--ESIIGA   90 (104)
T ss_dssp             TTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEEEEC
T ss_pred             CccceeEEecccchhhhhhcceeeeeEEEEEEcCeEE--EEEeCC
Confidence            3567889999999999999999999999999988765  345554

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.37  E-value=5.9e-07  Score=55.11  Aligned_cols=88  Identities=15%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCC----ccccceEEEcCceeeeceee
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYD----IKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~----v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      +++|.|| +.||+.|...+..+++..+++.+. .+.++.++.+...   ..+++..    +...|               
T Consensus        29 ~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~---------------   92 (170)
T d2h01a1          29 YVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIK---------------   92 (170)
T ss_dssp             EEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCS---------------
T ss_pred             eEEEEEECCCCCCccchhhHHHhhhhhhhhcC-CeeEecccCCcHHHHHhHhhhhhhhccccccC---------------
Confidence            6888898 999999999999999999999876 4888888877542   2222221    11211               


Q ss_pred             EEEEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~  106 (116)
                       ..+-.+.+..+.+.|++.     ..++.+++++++.+
T Consensus        93 -f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I  129 (170)
T d2h01a1          93 -HTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVV  129 (170)
T ss_dssp             -SEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBE
T ss_pred             -CceeEcCccHHHHHhCCccccccceeeeEEEcCCCeE
Confidence             122336788899999883     34788888766654

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.5e-07  Score=53.44  Aligned_cols=44  Identities=18%  Similarity=0.291  Sum_probs=37.2

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .++.+..+|++.+..++++|+|+++||+++|++|+.+  ..|.|..
T Consensus        51 ~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~~~G~~v--~~~~G~~   94 (108)
T d2trxa_          51 GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGAL   94 (108)
T ss_dssp             TTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEE--EEEESCC
T ss_pred             cceeeeeccccchhhHHHHhCCCcEEEEEEEECCEEE--EEEeCCC
Confidence            4678899999999999999999999999999998765  4455643

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.8e-07  Score=55.91  Aligned_cols=43  Identities=9%  Similarity=0.058  Sum_probs=37.6

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      .++||.+||+||+.|.+..+.++++.++|.+++ +.++.+.|++
T Consensus        25 KvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g-~~Il~fP~nq   67 (184)
T d2f8aa1          25 KVLLIENVASLGGTTVRDYTQMNELQRRLGPRG-LVVLGFPCNQ   67 (184)
T ss_dssp             SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCC
T ss_pred             CEEEEEEecccCCcchhhhHHHHHhhhhhcccc-eeEEEeeccc
Confidence            478999999999999999999999999998864 8888887764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.29  E-value=2.3e-07  Score=52.49  Aligned_cols=43  Identities=9%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      .+.+..+|++++++++++|+|+++||++++++|+.+  ..+.|..
T Consensus        51 ~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~--~~~~G~~   93 (107)
T d1a8la2          51 KILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDR--VEFEGAY   93 (107)
T ss_dssp             CEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEE--EEEESCC
T ss_pred             cEEEEEeccccccccccccccccceEEEEEeCCeEE--EEEECCC
Confidence            577888999999999999999999999999888764  4455543

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=1.6e-06  Score=52.84  Aligned_cols=86  Identities=6%  Similarity=-0.029  Sum_probs=50.1

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT   80 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~   80 (116)
                      ++++.|| +.||+.|.+.++.+++..+.+    .+.++.+..+......+...-...+               +..+-.+
T Consensus        45 ~vvl~f~~~~~~p~C~~e~~~l~~~~~~~----g~~vv~Is~d~~~~~~~~~~~~~~~---------------~~~~~~~  105 (166)
T d1xvqa_          45 SVLLNIFPSVDTPVCATSVRTFDERAAAS----GATVLCVSKDLPFAQKRFCGAEGTE---------------NVMPASA  105 (166)
T ss_dssp             CEEEEECSCCCSSCCCHHHHHHHHHHHHT----TCEEEEEESSCHHHHTTCC---------------------CEEEEEC
T ss_pred             EEEEEeeecccccccHHHHHHHhhhcccc----cccccccccchHHHHHHHHHHhCCc---------------ccccccc
Confidence            5788888 568888999988887766654    3566777666544332221111111               1122224


Q ss_pred             CccchhhhcCCC---------CCCEEEEecCCccc
Q psy3452          81 EHGPLCKEYDIK---------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        81 ~~~~~~~~~~v~---------~~Pt~~~~~~g~~~  106 (116)
                      .+..+.+.+++.         ..|+++++++.++|
T Consensus       106 ~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I  140 (166)
T d1xvqa_         106 FRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNV  140 (166)
T ss_dssp             TTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBE
T ss_pred             hhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEE
Confidence            456666777653         23688889766664

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.26  E-value=2.3e-06  Score=52.03  Aligned_cols=85  Identities=13%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++++.|| +.||+.|...++.+++..++++   .+.++.+..+..   ...++++++...                 ..+
T Consensus        44 ~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~---~~~vi~iS~d~~~~~~~~~~~~~~~~~-----------------~~~  103 (164)
T d1q98a_          44 RKVLNIFPSIDTGVCATSVRKFNQQAAKLS---NTIVLCISADLPFAQARFCGAEGIENA-----------------KTV  103 (164)
T ss_dssp             EEEEEECSCSCSSCCCHHHHHHHHHHHHST---TEEEEEEESSCHHHHTTCTTTTTCTTE-----------------EEE
T ss_pred             EEEEEecCccccCcccHHHHHHHHHHHHhc---cceEEeecCCcHHHHHHHHHHhCCccc-----------------ccc
Confidence            6788888 6688889999999999888886   467788877654   334445444332                 223


Q ss_pred             eccCccchhhhcCCC-------C--CCEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIK-------G--YPTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~-------~--~Pt~~~~~~g~~~  106 (116)
                      +...+..+.+.|++.       +  .|+++++++.+++
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I  141 (164)
T d1q98a_         104 STFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNV  141 (164)
T ss_dssp             ECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBE
T ss_pred             ccccchhHHHhhceecccCccccCcccEEEEECCCCEE
Confidence            334556677777652       2  3889999766664

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.25  E-value=2.2e-07  Score=52.32  Aligned_cols=36  Identities=17%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +..++.+|++.+.+++++|+|+++||+++|++|+.+
T Consensus        49 ~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~v   84 (103)
T d1syra_          49 KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSV   84 (103)
T ss_dssp             TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             ceEEEeeccccCcceeeeeeeecceEEEEEECCEEE
Confidence            567889999999999999999999999999998765

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.21  E-value=9.2e-07  Score=53.76  Aligned_cols=85  Identities=8%  Similarity=0.067  Sum_probs=54.4

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI   77 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v   77 (116)
                      ++++.|| +.||+.|...++.+.+..++++   .+.++.+..+...   ...++.+....                 ...
T Consensus        44 ~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~~~~~~~~~~~~~~~~~-----------------~~~  103 (163)
T d1psqa_          44 KKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMDLPFAQKRWCGAEGLDNA-----------------IML  103 (163)
T ss_dssp             EEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESSCHHHHHHHHHHHTCTTS-----------------EEE
T ss_pred             EEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEeccHHHHHHHHHHcCCcce-----------------eee
Confidence            5777788 7899999999988887777765   4677777766443   22333333221                 122


Q ss_pred             eccCccchhhhcCCCC--C----CEEEEecCCccc
Q psy3452          78 DCTEHGPLCKEYDIKG--Y----PTFQYFHYFNKQ  106 (116)
Q Consensus        78 ~~~~~~~~~~~~~v~~--~----Pt~~~~~~g~~~  106 (116)
                      ..+.+..+.+.|++..  +    ++.+++++.++|
T Consensus       104 ~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I  138 (163)
T d1psqa_         104 SDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTI  138 (163)
T ss_dssp             ECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBE
T ss_pred             ccccchhHHHhheeecccccceeEEEEEECCCCEE
Confidence            3345667888888742  2    357888766554

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.7e-07  Score=51.61  Aligned_cols=36  Identities=25%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.++.+|++.+.+++++|+|+++||+++|++|+.+
T Consensus        51 ~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~~G~~v   86 (105)
T d2ifqa1          51 NVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKV   86 (105)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEE
T ss_pred             cceeeecccccCHhHHHHcCceEEEEEEEEECCEEE
Confidence            456789999999999999999999999999998765

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.18  E-value=4.6e-07  Score=52.01  Aligned_cols=36  Identities=17%  Similarity=0.347  Sum_probs=33.0

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..++++.+.+++++|+|+++||+++|++|+.+
T Consensus        59 ~~~~~~vd~~~~~~l~~~~~V~~~Pt~~~~~~G~~v   94 (114)
T d1xfla_          59 NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKIL   94 (114)
T ss_dssp             SEEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             ccceeEEEeeeceeeccccceeeeEEEEEEECCEEE
Confidence            567889999999999999999999999999998765

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.15  E-value=7.7e-07  Score=51.02  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.++.+|++.+.+++++|+|+++||+++|++|+.+
T Consensus        56 ~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v   92 (113)
T d1r26a_          56 PTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKML   92 (113)
T ss_dssp             TTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             ccccccccccccchhhHHHccccCCCEEEEEECCEEE
Confidence            4678899999999999999999999999999998765

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1e-05  Score=51.49  Aligned_cols=88  Identities=14%  Similarity=-0.005  Sum_probs=62.0

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---cc------C-CccccceEEEcCceeeec
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KE------Y-DIKGYPTFHHLALTIMII   70 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~------~-~v~~~Pt~~~~~~~v~f~   70 (116)
                      ++++.|| +.||+.|...+..+++..+++... ++.++.+.++......   +.      + +...              
T Consensus        29 ~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~-g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~--------------   93 (220)
T d1prxa_          29 WGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEK--------------   93 (220)
T ss_dssp             EEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSC--------------
T ss_pred             eEEEEEECCCCCCcchhhHHHHHHHHHHhhcc-cceeeccccccccchhhhhhhhhhccccccccC--------------
Confidence            5777788 889999999999999999999877 4788888877543211   11      1 1111              


Q ss_pred             eeeEEEEeccCccchhhhcCCC------------CCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIK------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~------------~~Pt~~~~~~g~~~  106 (116)
                       +. ..+-++.+.++++.|++-            ..+++++++..+.|
T Consensus        94 -l~-fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~I  139 (220)
T d1prxa_          94 -LP-FPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKL  139 (220)
T ss_dssp             -CS-SCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBE
T ss_pred             -cc-cccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccce
Confidence             11 223447889999999985            45889999776655

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.14  E-value=4e-07  Score=52.10  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +++.+..+|++++.+++++|+|+++||+++|++|+.+
T Consensus        55 ~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~v   91 (112)
T d1ep7a_          55 GKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKA   91 (112)
T ss_dssp             TTSEEEEEETTTTHHHHHHHTCCBSSEEEEEETTEEE
T ss_pred             ceEEEEEeeccccccccccccccCCCEEEEEECCEEE
Confidence            3578899999999999999999999999999998765

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.7e-07  Score=50.81  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=33.2

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.+..+|.+.+.+++++|+|+++||+++|++|+.+
T Consensus        52 ~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~v   87 (107)
T d1gh2a_          52 QAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVRI   87 (107)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             cccccccccccchhhhhhcCceeceEEEEEECCEEE
Confidence            577899999999999999999999999999998775

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.10  E-value=4.9e-07  Score=51.77  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .++.+..+|++.+.+++++|+|+++||+++|++|+.+
T Consensus        56 ~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~k~G~~v   92 (113)
T d1ti3a_          56 PNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLV   92 (113)
T ss_dssp             SSEEEEEEETTTCHHHHHHHHCSSTTEEEEEETTEEE
T ss_pred             CCceEEeeeeeccccccccCeecccceEEEEECCEEE
Confidence            3567889999999999999999999999999998764

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.10  E-value=1.5e-06  Score=47.06  Aligned_cols=35  Identities=20%  Similarity=0.185  Sum_probs=30.4

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~  105 (116)
                      .+.+..++++++.+++++|+|+++||++++++|+.
T Consensus        34 ~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~~   68 (85)
T d1fo5a_          34 AVEVEYINVMENPQKAMEYGIMAVPTIVINGDVEF   68 (85)
T ss_dssp             SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEEC
T ss_pred             ccccccccccccccccccCCceEeeEEEEECCcEE
Confidence            46677889999999999999999999998887654

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=2.2e-06  Score=46.63  Aligned_cols=42  Identities=26%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      |-|+ .|..++|++|.+....++++...+.   .+.+..+|.+.++
T Consensus         1 Mkvv-iysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~~~~~~~~   42 (85)
T d1egoa_           1 MQTV-IFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEG   42 (85)
T ss_dssp             CEEE-EECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHT
T ss_pred             CEEE-EEeCCCCHhHHHHHHHHHHcCCCCC---CceEEEEecCCCH
Confidence            4544 4899999999999999999888877   4677777665544

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.2e-06  Score=51.98  Aligned_cols=37  Identities=19%  Similarity=0.142  Sum_probs=33.8

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      +.+.++.+|++++.+++++|+|+++||+++|++|+.+
T Consensus        53 ~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~~i   89 (137)
T d1qgva_          53 NFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI   89 (137)
T ss_dssp             TTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEEE
T ss_pred             ccceEEEeeccccchhhhhcCeeeEEEEEEEeCCcEE
Confidence            3578899999999999999999999999999998765

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.07  E-value=7.7e-07  Score=50.93  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=34.2

Q ss_pred             ceeeEEEEeccC-ccchhhhcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452          70 IRLALAAIDCTE-HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHN  113 (116)
Q Consensus        70 ~~~~~~~v~~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g  113 (116)
                      .++.+..+|++. +.+++++|+|+++||+++|++|+.+  ..+.|
T Consensus        55 ~~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~~k~G~~v--~~~~G   97 (112)
T d1f9ma_          55 LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVV--GEVTG   97 (112)
T ss_dssp             TTSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEE--EEEES
T ss_pred             ccceeecccccccchhhHhheeeccCCEEEEEECCEEE--EEEeC
Confidence            456788999874 7899999999999999999988775  33444

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.05  E-value=3.8e-06  Score=44.37  Aligned_cols=51  Identities=20%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTF   60 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~   60 (116)
                      |- ++.|..+||++|.+....+++.        .+.+..+|++++++..   +..+.+.+|++
T Consensus         1 M~-v~iYt~~~C~~C~~ak~~L~~~--------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i   54 (74)
T d1r7ha_           1 MS-ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVV   54 (74)
T ss_dssp             CC-EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEE
T ss_pred             CE-EEEEeCCCChhHHHHHHHHHHc--------CCceEEEEccCCHHHHHHHHHhCCCCcCEE
Confidence            44 4568999999999998877652        4667777777665322   33444555544

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.02  E-value=1.5e-06  Score=49.49  Aligned_cols=41  Identities=22%  Similarity=0.419  Sum_probs=34.9

Q ss_pred             eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452          71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHN  113 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g  113 (116)
                      .+.+..++++.+.+++++|+|+++||+++|++|+.+  ..+.|
T Consensus        57 ~~~~~~i~~d~~~~l~~~~~V~~~Pt~~~~~~G~~v--~~~~G   97 (111)
T d1xwaa_          57 NVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKV--EEFAG   97 (111)
T ss_dssp             TEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EEEES
T ss_pred             ceEEEEEEeecCcchhhcCCCccccEEEEEECCEEE--EEEeC
Confidence            467789999999999999999999999999988765  34444

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=3.4e-06  Score=44.84  Aligned_cols=53  Identities=11%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEE
Q psy3452           1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHH   62 (116)
Q Consensus         1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~   62 (116)
                      |- ++.|..+||++|.+....+++.        ++.+..+|++++++..   +..+.+.+|.+.+
T Consensus         1 Mk-i~iYs~~~C~~C~~ak~~L~~~--------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           1 MR-ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             CC-EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             CE-EEEEeCCCCccHHHHHHHHHhc--------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            44 4568999999999998888652        4777778887776432   3446666776653

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.9e-06  Score=48.09  Aligned_cols=43  Identities=12%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             CeEEEEEEcCCCH-HHHhhhHHHHHHHHHhccCc---ceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCG-YCKKAKPEYVKAAEVLKDNH---KVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~-~C~~~~~~~~~~~~~~~~~~---~~~~~~vd~~   43 (116)
                      ++++|.||.+||+ .|....+.+.++.+.+....   .+.+..+..+
T Consensus        21 K~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (160)
T d1wp0a1          21 QWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID   67 (160)
T ss_dssp             SEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESC
T ss_pred             CEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccC
Confidence            4799999999996 69988888888888775543   3444444443

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.90  E-value=2e-05  Score=47.41  Aligned_cols=42  Identities=21%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      +.++.|....||+|+++.+.+.++.+++.+...+.+......
T Consensus        26 v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (172)
T d1z6ma1          26 VKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   67 (172)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecccc
Confidence            468999999999999999999999998877655555555443

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.89  E-value=5.9e-06  Score=44.72  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEEecCC
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYF  103 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g  103 (116)
                      +++.+..+|++++.+++++|+|+++||+++.+.+
T Consensus        32 ~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~~   65 (85)
T d1nhoa_          32 DKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVV   65 (85)
T ss_dssp             SSCCEEEECTTTCGGGGGGTCSSCSSEEEETTTE
T ss_pred             ccccccccccccchhhHHhcCceEeCEEEECCcE
Confidence            3578899999999999999999999999875443

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.88  E-value=2.2e-05  Score=45.28  Aligned_cols=59  Identities=24%  Similarity=0.370  Sum_probs=35.4

Q ss_pred             EEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC--cccccccCCccccceEEEcCc
Q psy3452           4 SILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         4 ~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      ++.|-+ +.|+.|..+...++++++.-.   ++.+...+.+.  +++.++++++...|++.++++
T Consensus        26 l~~~~~~~~~~~~~e~~~ll~ela~lSd---ki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~   87 (119)
T d1a8la1          26 LIVFVRKDHCQYCDQLKQLVQELSELTD---KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQD   87 (119)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTTCT---TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEET
T ss_pred             EEEEecCCCchhHHHHHHHHHHHHhhCC---CeEEEEeccCcchhhhHHHhhccccCceEEEecC
Confidence            343433 579999999999999877643   55555544433  234455555555555554443

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.85  E-value=8.4e-06  Score=49.63  Aligned_cols=44  Identities=14%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             CeEEEEEEcCCCH-HHHhhhHHHHHHHHHhccCc-ceEEEEEeCCC
Q psy3452           1 MFYSILFYSPGCG-YCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE   44 (116)
Q Consensus         1 ~~v~v~F~a~wC~-~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~   44 (116)
                      ++++|.||.+||+ .|....+.+.++.+.+.+.+ ++.++.+..+.
T Consensus        32 k~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp   77 (172)
T d1xzoa1          32 EVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP   77 (172)
T ss_dssp             CCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CEEEEEEecccccccccccchhhhhhhhhhcccccccccccccccc
Confidence            4789999999997 69999999999988886544 67777777653

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.84  E-value=4.1e-06  Score=48.46  Aligned_cols=58  Identities=14%  Similarity=0.115  Sum_probs=50.8

Q ss_pred             EcCCC---HHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGC---GYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC---~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |-.+|   +.|..+.+.++++++.+.+. .+.++++|++++++++++++|+++||+++|+++
T Consensus        39 wC~~~~~~~~~~~~~~~~~~~a~~~~~~-~v~~a~Vd~~~~~~l~~~~~I~~yPTi~~f~~g   99 (124)
T d1a8ya1          39 PEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED   99 (124)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHTGGG-TEEEEEEETTTSHHHHHTTTCCSTTCEEEEESS
T ss_pred             CccchhhhhHHHHHHHHHHHHHHHhccC-CeEEEEEEeecccchhhccccccCCcEEEeccC
Confidence            44455   56999999999999988764 599999999999999999999999999999885

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.81  E-value=2.4e-05  Score=47.33  Aligned_cols=41  Identities=17%  Similarity=0.228  Sum_probs=33.3

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      +.+|.|....||+|+++.+.+.++.+.+.+...+....+..
T Consensus        20 ~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~   60 (181)
T d1beda_          20 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSF   60 (181)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSS
T ss_pred             CEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccc
Confidence            57899999999999999999999999988754555555544

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=2e-05  Score=47.90  Aligned_cols=38  Identities=24%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT   43 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~   43 (116)
                      .+++.|.-+.||+|+++.+.++++.+..    ++.+..++..
T Consensus        38 ~tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~   75 (169)
T d1v58a1          38 VIVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVG   75 (169)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecc
Confidence            4688899999999999999998876543    4555555543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.79  E-value=8.7e-06  Score=45.11  Aligned_cols=30  Identities=23%  Similarity=0.236  Sum_probs=27.1

Q ss_pred             ceeeEEEEeccCccchhhhcCCCCCCEEEE
Q psy3452          70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQY   99 (116)
Q Consensus        70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   99 (116)
                      .++.+..+|++.+.+++++|+|+++||+++
T Consensus        45 ~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~   74 (96)
T d1hyua4          45 PRIKHTAIDGGTFQNEITERNVMGVPAVFV   74 (96)
T ss_dssp             TTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CceEEEEEecccchHHHhhcccccccEEEE
Confidence            367889999999999999999999999865

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.75  E-value=2.1e-06  Score=49.64  Aligned_cols=55  Identities=9%  Similarity=0.156  Sum_probs=39.4

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |.+-|..-....+.+.+-....+-.    ++++|++++++++++|+|+++||+++|++|
T Consensus        41 wCp~C~~~~pvl~eL~~~~~~~~~~----~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G   95 (119)
T d2es7a1          41 RTPEVSDNPVMIAELLREFPQFDWQ----VAVADLEQSEAIGDRFNVRRFPATLVFTDG   95 (119)
T ss_dssp             C----CCHHHHHHHHHHTCTTSCCE----EEEECHHHHHHHHHTTTCCSSSEEEEESCC
T ss_pred             CCccHHHHHHHHHHHHHhcCCCceE----EEEEECCCCHHHHHhcCcCcceEEEEEEcC
Confidence            4566777777777776665432211    356899999999999999999999999886

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.70  E-value=3.2e-05  Score=49.09  Aligned_cols=88  Identities=14%  Similarity=0.184  Sum_probs=63.1

Q ss_pred             eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC----CccccceEEEcCceeeeceee
Q psy3452           2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY----DIKGYPTFHHLALTIMIIRLA   73 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~----~v~~~Pt~~~~~~~v~f~~~~   73 (116)
                      ++++.|| +.||+.|...+..+++..+++... ++.++.++++....   .++..    ++..+|               
T Consensus        32 ~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~-~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~---------------   95 (219)
T d1xcca_          32 WAILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWE---------------   95 (219)
T ss_dssp             EEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCC---------------
T ss_pred             eEEEEEEcCCCCcccchhHHHHHHhhhhhccc-ceEEEeecCccHhHHhHHhhhhHhhcccCCCC---------------
Confidence            6788888 999999999999999999999877 58888888876432   22221    222211               


Q ss_pred             EEEEeccCccchhhhcCCC------------CCCEEEEecCCccc
Q psy3452          74 LAAIDCTEHGPLCKEYDIK------------GYPTFQYFHYFNKQ  106 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~------------~~Pt~~~~~~g~~~  106 (116)
                       ..+-++.+.++++.|++-            ...+++++++.++|
T Consensus        96 -fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~I  139 (219)
T d1xcca_          96 -IPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKI  139 (219)
T ss_dssp             -CCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBE
T ss_pred             -cccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceE
Confidence             223458888999999982            23588888777665

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=9.8e-06  Score=46.47  Aligned_cols=30  Identities=43%  Similarity=0.826  Sum_probs=27.4

Q ss_pred             EEEEeCCCcccccccCCccccceEEEcCce
Q psy3452          37 LAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        37 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ++++|++++++++++++|+++||+++|++|
T Consensus        63 ~~~vd~~~~~~l~~~~~v~~~Pti~~f~~g   92 (119)
T d2b5ea4          63 LAQIDCTENQDLCMEHNIPGFPSLKIFKNS   92 (119)
T ss_dssp             EEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             eeeeeccchHHHHHHhccccCCeEEEEECC
Confidence            568899999999999999999999999764

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.67  E-value=3.9e-05  Score=41.08  Aligned_cols=49  Identities=16%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceEE
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTFH   61 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~   61 (116)
                      ..|..+||++|.+....+++.        ++.+..+|+++++..    .+..+.+.+|.+.
T Consensus         4 ~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~   56 (82)
T d1fova_           4 EIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF   56 (82)
T ss_dssp             EEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred             EEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEE
Confidence            458899999999988777653        466677777766533    2333555566543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=3.5e-05  Score=46.15  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=23.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAE   27 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~   27 (116)
                      .+++.|.-+.||+|+++.|.++++.+
T Consensus        28 ~tIv~FsD~~CpyC~~~~~~l~~~~~   53 (156)
T d1eeja1          28 HVITVFTDITCGYCHKLHEQMADYNA   53 (156)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHH
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHhhc
Confidence            57888999999999999999998754

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.63  E-value=3.7e-05  Score=45.79  Aligned_cols=27  Identities=15%  Similarity=0.407  Sum_probs=23.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHH
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEV   28 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~   28 (116)
                      .+++.|.-+.||+|+++.+.++++.+.
T Consensus        28 ~~I~~FsD~~CPyC~~~~~~l~~l~~~   54 (150)
T d1t3ba1          28 HVVTVFMDITCHYCHLLHQQLKEYNDL   54 (150)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHHT
T ss_pred             EEEEEEECCCCHHHHHHhHHHHHHhcc
Confidence            468889999999999999999888754

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=7.9e-05  Score=39.05  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=25.8

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++.|+.++|+.|.++...+++.        ++.+..++.+.+.
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~--------~i~~~~~~v~~~~   41 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDA   41 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCeEEEEccCcH
Confidence            4678999999999999887753        3555666665543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.48  E-value=2.7e-05  Score=43.80  Aligned_cols=40  Identities=18%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG   46 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~   46 (116)
                      ++.|..+||++|.+....+++..-.+.   .+.+..+|.+.+.
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~---~~~~~e~d~~~d~   53 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDT   53 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTH
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccc---eeeeeeccccccc
Confidence            567999999999999988876533332   4667777666543

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=9e-06  Score=47.74  Aligned_cols=40  Identities=13%  Similarity=0.133  Sum_probs=33.9

Q ss_pred             EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452          74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY  115 (116)
Q Consensus        74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~  115 (116)
                      ++.+|++++.+++++|+|+++||+++|++|+.+  ..+.|..
T Consensus        72 ~a~Vd~d~~~~la~~~~V~~~PT~~~~~~G~~v--~~~~G~~  111 (132)
T d2hfda1          72 VAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR--GVLNGIH  111 (132)
T ss_dssp             EEEECHHHHHHHHHHHTCCSCCEEEEEETTEEE--EEECCCS
T ss_pred             eEEEEecCCHHHHHhhccCcceeEEEEEcCcEe--eeecCCC
Confidence            478999999999999999999999999998765  4555543

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.3e-05  Score=44.74  Aligned_cols=57  Identities=21%  Similarity=0.368  Sum_probs=38.3

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |-+.|..=......+.+..+.....-  .++++|++.++.++++++|+++||+++|++|
T Consensus        35 wC~~C~~~~p~~~~~~~~~~~~~~~v--~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G   91 (120)
T d1meka_          35 WCGHCKALAPEYAKAAGKLKAEGSEI--RLAKVDATEESDLAQQYGVRGYPTIKFFRNG   91 (120)
T ss_dssp             SCSTTSTTHHHHHHHHHTTTTTCCCC--BCEEEETTTCCSSHHHHTCCSSSEEEEEESS
T ss_pred             CcCCccccchhhhhhcccccccccce--eeeccccccchhHHHHhCCccCCeEEEEECC
Confidence            45566544433333333333322323  3578999999999999999999999998765

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00012  Score=44.45  Aligned_cols=39  Identities=15%  Similarity=0.177  Sum_probs=26.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHH---HhccCcceEEEEEeC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAE---VLKDNHKVALAAIDC   42 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~---~~~~~~~~~~~~vd~   42 (116)
                      +++|.|..-.||+|+++.+.+..+.+   ..++  .+.+.....
T Consensus        20 ~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~--~~~~~~~~~   61 (188)
T d1fvka_          20 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHV   61 (188)
T ss_dssp             CSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCT--TCCEEEEEC
T ss_pred             CEEEEEECCCChhhHHHHHHHHHHHHHhhccCC--ceEEEEEec
Confidence            46889999999999999987744433   3333  455555544

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.33  E-value=0.00022  Score=37.60  Aligned_cols=50  Identities=16%  Similarity=0.378  Sum_probs=36.6

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      +..|..++|+.|..+...+.+   . .   .+.+..+|+++++++.++|+.+ +|.+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~-~---~~~~~~vdI~~d~~l~~~y~~~-IPVl~   51 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A-R---AGAFFSVFIDDDAALESAYGLR-VPVLR   51 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T-T---CCCEEEEECTTCHHHHHHHTTT-CSEEE
T ss_pred             EEEECCCCccHHHHHHHHHHh---c-c---CCcEEEEEccCCHHHHHHhCCe-eeEEE
Confidence            567899999999887654432   1 1   4677888888888888888865 78554

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.14  E-value=0.00041  Score=36.64  Aligned_cols=52  Identities=21%  Similarity=0.393  Sum_probs=33.8

Q ss_pred             EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      |...++.|+.|.++....+++.+++.-  ...+.++  +..+++. +|++.++|.++
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi--~a~v~kv--~d~~ei~-~ygVmstPalv   55 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKI--KEMDQIL-EAGLTALPGLA   55 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEE--CSHHHHH-HHTCSSSSCEE
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCC--ceEEEEe--CCHHHHH-HcCCcCCCEEE
Confidence            344589999999999999998888743  3444443  2333333 46666666554

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.0007  Score=39.67  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=25.1

Q ss_pred             CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhccCc--ceEEEEEeCC
Q psy3452           1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLKDNH--KVALAAIDCT   43 (116)
Q Consensus         1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~~--~~~~~~vd~~   43 (116)
                      ++++|.||.+||+. |......+..+.+.+....  .+.+.....+
T Consensus        27 K~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (169)
T d2b7ka1          27 KFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD   72 (169)
T ss_dssp             SCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred             CEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccc
Confidence            47899999999965 5555555555544443321  3444444433

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00039  Score=40.51  Aligned_cols=54  Identities=17%  Similarity=0.155  Sum_probs=31.8

Q ss_pred             cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           9 SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         9 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      .+.|..=......+.+........-  .++.+|+  +..++++++|.++||+++|++|
T Consensus        42 C~~C~~~~p~~~~la~~~~~~~~~v--~~~~~d~--~~~~~~~~~v~~~Ptl~~f~~g   95 (140)
T d2b5ea1          42 CGHCKRLAPTYQELADTYANATSDV--LIAKLDH--TENDVRGVVIEGYPTIVLYPGG   95 (140)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCSSC--EEEEEEG--GGCCCSSCCCSSSSEEEEECCT
T ss_pred             CcccchhHHHHHHHHHHHhccccce--EEEeeec--cchhccccccccCCeEEEEECC
Confidence            3445444434444433333322222  2345555  4567999999999999999874

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.26  E-value=0.0085  Score=34.26  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=45.0

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc--ccceEEEcC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK--GYPTFHHLA   64 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~   64 (116)
                      +.++.|+.+. ....++...+.++++++.+  ++.++.+|.++.....+.+++.  ..|.+++++
T Consensus        25 pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~--ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~~   86 (133)
T d2djka1          25 PLAYIFAETA-EERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQE   86 (133)
T ss_dssp             CEEEEECSCS-SSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEEEEEC
T ss_pred             CEEEEEeCCc-hHHHHHHHHHHHHHHHhcC--ceEEEEEeHHHhHHHHHHhcCCcccCCcEEEEE
Confidence            3455566544 3567788899999999987  7899999988888888888874  467776554

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.00064  Score=42.74  Aligned_cols=38  Identities=11%  Similarity=0.098  Sum_probs=31.2

Q ss_pred             eeceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452          68 MIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        68 ~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .|..+.|.+++++..+ +..+|+|+++||+++|++|..+
T Consensus       148 ~~~~vkF~ki~~~~~~-~~~~~~i~~lPtl~~yk~G~~v  185 (217)
T d2trcp_         148 EYPMVKFCKIRASNTG-AGDRFSSDVLPTLLVYKGGELI  185 (217)
T ss_dssp             TCTTSEEEEEEHHHHT-CSTTSCGGGCSEEEEEETTEEE
T ss_pred             hcccceEEEEccccch-hHHhCCCCCCCeEEEEECCEEE
Confidence            3467899999987554 5679999999999999999654

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0051  Score=35.11  Aligned_cols=60  Identities=20%  Similarity=0.340  Sum_probs=45.8

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccc-cceEEEcC
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG-YPTFHHLA   64 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~   64 (116)
                      +.++.|+.+. ..-.++...+.++++++.+  ++.|+.+|.++.....+.+|+.. .|.+.+.+
T Consensus        19 Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkg--ki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~   79 (125)
T d2b5ea3          19 PLGYLFYNDE-EELEEYKPLFTELAKKNRG--LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD   79 (125)
T ss_dssp             CEEEEEESSH-HHHHHHHHHHHHHHHHTTT--TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEE
T ss_pred             CEEEEEeCCh-HHHHHHHHHHHHHHHHhcC--eeEEEEEchHHhHHHHHHcCCCccCCcEEEEe
Confidence            5566677754 3345788899999999988  79999999888888888888864 77776543

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=95.80  E-value=0.011  Score=31.81  Aligned_cols=59  Identities=20%  Similarity=0.169  Sum_probs=50.2

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      +++-.|-+..-+...+....+.++.+.+-+. ...+--+|..+++++++.+++-.+||++
T Consensus         2 y~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~-~y~LeVIDv~~qP~lAe~~~IvATPtLv   60 (90)
T d1r5pa_           2 YVLKLYVAGNTPNSVRALKTLKNILEQEFQG-IYALKVIDVLKNPQLAEEDKILATPTLS   60 (90)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTSCSCCTTCCEECHHHHG
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHHHHHhcCC-cEEEEEEEcccCHhHHhhCCEEeehHHH
Confidence            5677788888899999888888887765433 6889999999999999999999999976

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0016  Score=40.20  Aligned_cols=38  Identities=16%  Similarity=0.200  Sum_probs=27.7

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHH---HHHHHhccCcceEEEEEe
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYV---KAAEVLKDNHKVALAAID   41 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~---~~~~~~~~~~~~~~~~vd   41 (116)
                      +.++.|++-+||+|.++.|.+.   ++.+.+++  .+.+...-
T Consensus       115 ~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~--~v~~~~~~  155 (195)
T d1un2a_         115 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYH  155 (195)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEE
T ss_pred             ceEEEEEecCCccccccchhhhHHHHHHhhcCC--CcEEEEEe
Confidence            4578999999999999999775   55666665  44444433

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.00028  Score=39.77  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL   65 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   65 (116)
                      |-++|..=....-...++.+.+.+.. .......+.+.+.+++++++|.++||++++++
T Consensus        33 wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~   91 (117)
T d2fwha1          33 WCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDG   91 (117)
T ss_dssp             TCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECT
T ss_pred             cCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEEEeC
Confidence            34455553333222233333444333 34445677888899999999999999999865

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=95.29  E-value=0.056  Score=29.77  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=42.7

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH   61 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   61 (116)
                      .+..|-+. -+...+....+.++.+.+.......+--+|..+++.+++.+++-.+||++
T Consensus        14 ~L~LfV~g-~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLI   71 (105)
T d1t4za_          14 LLQLFVDT-RPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALV   71 (105)
T ss_dssp             EEEEEECS-CHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             EEEEEEcC-CcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhh
Confidence            34445444 46666666667776666544325888899999999999999999999997

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.11  E-value=0.0042  Score=35.13  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             ceEEEEEeCCCcccccccCCc--cccceEEEcCce
Q psy3452          34 KVALAAIDCTEHGPLCKEYDI--KGYPTFHHLALT   66 (116)
Q Consensus        34 ~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~~   66 (116)
                      .+.....++.++++++++|++  +++||+++|+++
T Consensus        57 ~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~~f~~g   91 (122)
T d2c0ga2          57 TVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGN   91 (122)
T ss_dssp             EEEECSSTTCTTHHHHHHTTCCTTSCCEEEEESSS
T ss_pred             eccccccccccCHHHHHHhhcccCCCCcEEEEeCC
Confidence            566667778899999999988  579999999875

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.011  Score=32.84  Aligned_cols=44  Identities=18%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEE
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFH   61 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~   61 (116)
                      |.|+.|.+....+..    +    .+.+..+|.+++++..    +..+...+|.+.
T Consensus        28 p~Cp~c~~ak~lL~~----~----~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF   75 (109)
T d1wika_          28 AKCGFSKQILEILNS----T----GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY   75 (109)
T ss_dssp             CCSSTHHHHHHHHHH----T----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred             CCChHHHHHHHHHHh----c----CCCceEEEecccHHHHHHHHHhcCCCCCCeEE
Confidence            889999998877753    2    4667777777765432    233444556554

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0044  Score=35.03  Aligned_cols=24  Identities=13%  Similarity=0.245  Sum_probs=21.3

Q ss_pred             CCcccccccCCccccceEEEcCce
Q psy3452          43 TEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        43 ~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +.+..++++|+|+++||+++|+++
T Consensus        76 d~~~~l~~~~~V~~iPT~i~~~~g   99 (119)
T d1woua_          76 DPNNDFRKNLKVTAVPTLLKYGTP   99 (119)
T ss_dssp             CTTCHHHHHHCCCSSSEEEETTSS
T ss_pred             hhhhhHHHhCCeEEEEEEEEEECC
Confidence            567788999999999999999875

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=94.59  E-value=0.039  Score=30.27  Aligned_cols=56  Identities=18%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      |-+.|..=......+.+..........+.+...+....   +.+++|+++||+++|+++
T Consensus        31 wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~Pti~~f~~g   86 (116)
T d2djja1          31 WCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN---DVPDEIQGFPTIKLYPAG   86 (116)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS---CCSSCCSSSSEEEEECSS
T ss_pred             ccccccccchHHHHHHHHHhcccccceeEEEecccchh---hhcccccCCCEEEEEECC
Confidence            55667666656666655555444433566666666554   467899999999998764

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.021  Score=33.69  Aligned_cols=73  Identities=18%  Similarity=0.189  Sum_probs=43.4

Q ss_pred             eEEEEEE-cCCCHHHH-hhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           2 FYSILFY-SPGCGYCK-KAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~-~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++.|| ..|++.|. +..+.+++....+...+...++-+..+...   ..+...+...                . ..
T Consensus        33 ~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~~~~~~~~~~----------------~-~~   95 (161)
T d1hd2a_          33 KGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEG----------------K-VR   95 (161)
T ss_dssp             EEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTT----------------T-CE
T ss_pred             eEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhhhhhhhccccc----------------c-cc
Confidence            5778888 99999994 577888887777766543333333333321   2222322221                1 12


Q ss_pred             EeccCccchhhhcCC
Q psy3452          77 IDCTEHGPLCKEYDI   91 (116)
Q Consensus        77 v~~~~~~~~~~~~~v   91 (116)
                      +-.+.+.++++.|++
T Consensus        96 llsD~~~~~a~~~g~  110 (161)
T d1hd2a_          96 LLADPTGAFGKETDL  110 (161)
T ss_dssp             EEECTTCHHHHHHTC
T ss_pred             cccCCcceeeeeeee
Confidence            334678888888876

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.022  Score=30.95  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             eeEEEEeccCccchhhhcCCCCCCEEEE
Q psy3452          72 LALAAIDCTEHGPLCKEYDIKGYPTFQY   99 (116)
Q Consensus        72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   99 (116)
                      ..+..+|.+.+.++.++|+++ .|++++
T Consensus        46 ~~~v~vd~~~~~~l~~~y~~~-VPvl~i   72 (100)
T d1wjka_          46 LQEVDITLPENSTWYERYKFD-IPVFHL   72 (100)
T ss_dssp             EEEEETTSSTTHHHHHHSSSS-CSEEEE
T ss_pred             eEEEecccccCHHHHHHhccc-CCceee
Confidence            455667778899999999987 998765

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.049  Score=31.67  Aligned_cols=32  Identities=9%  Similarity=0.164  Sum_probs=24.6

Q ss_pred             eeeEEEEecc--CccchhhhcCCCCCCEEEEecC
Q psy3452          71 RLALAAIDCT--EHGPLCKEYDIKGYPTFQYFHY  102 (116)
Q Consensus        71 ~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~  102 (116)
                      ++.+..++.+  +..+++++|+|.++||+++++.
T Consensus        77 ~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp  110 (147)
T d2dlxa1          77 HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDP  110 (147)
T ss_dssp             TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECT
T ss_pred             heeEeeecccchhhhhhhhheecCceeEEEEEeC
Confidence            3455666655  4467899999999999999953

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.96  E-value=0.11  Score=27.37  Aligned_cols=28  Identities=25%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452          10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH   45 (116)
Q Consensus        10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   45 (116)
                      +.|++|.+....+++.        ++.+..+++++.
T Consensus        12 ~~C~~C~~AK~lL~~~--------~i~y~~~~i~~~   39 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVK--------KQPFEFINIMPE   39 (87)
T ss_dssp             SCCHHHHHHHHHHHHT--------TCCEEEEESCSB
T ss_pred             CCChhHHHHHHHHHHc--------CCCceecccccc
Confidence            3599999988776642        466666666554

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.84  E-value=0.042  Score=30.14  Aligned_cols=52  Identities=13%  Similarity=0.012  Sum_probs=35.9

Q ss_pred             eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452           2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus         2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +|-+..+...|..|.++...++++++.-+   ++.+..-+.          .....|++.+.+++
T Consensus        20 ~V~l~~~~~~~~~s~el~~~l~eva~lSd---kI~~~~~~~----------~~~r~Ps~~i~~~g   71 (102)
T d1hyua3          20 PVELIATLDDSAKSAEIKELLAEIAELSD---KVTFKEDNT----------LPVRKPSFLITNPG   71 (102)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCT---TEEEEECTT----------SSSCSSEEEEECTT
T ss_pred             CEEEEEEeCCChhHHHHHHHHHHHHhhCC---CeEEEEcCC----------CCCCCCeEEEecCC
Confidence            46667788899999999989998887643   566643221          22346888877654

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=91.67  E-value=0.23  Score=28.90  Aligned_cols=73  Identities=12%  Similarity=0.145  Sum_probs=42.5

Q ss_pred             eEEEEEE-cCCCHHHH-hhhHHHHHHHHHhccCcceEEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeEEE
Q psy3452           2 FYSILFY-SPGCGYCK-KAKPEYVKAAEVLKDNHKVALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLALAA   76 (116)
Q Consensus         2 ~v~v~F~-a~wC~~C~-~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~   76 (116)
                      .+++.|| +.+++.|. +..+..++..+.+...+...+.-+.++..   ...+...+...                . ..
T Consensus        37 ~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~~~~~~~~~~~~~~~----------------~-~~   99 (162)
T d1tp9a1          37 KVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENK----------------H-VK   99 (162)
T ss_dssp             EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCS----------------S-EE
T ss_pred             eEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccchhhhhhhhhhccccc----------------c-cc
Confidence            5677777 99999995 67788877777665544233333333332   23333333221                1 22


Q ss_pred             EeccCccchhhhcCC
Q psy3452          77 IDCTEHGPLCKEYDI   91 (116)
Q Consensus        77 v~~~~~~~~~~~~~v   91 (116)
                      +..+.+.++++.|++
T Consensus       100 ~lsD~~~~~~~~~g~  114 (162)
T d1tp9a1         100 FLADGSATYTHALGL  114 (162)
T ss_dssp             EEECTTSHHHHHTTC
T ss_pred             cccchhhHHHhhhhh
Confidence            344667778888875

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.95  E-value=0.02  Score=31.70  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             CcccccccCCccccceEEEcCce
Q psy3452          44 EHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        44 ~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      ...+++++++|.++||++++++|
T Consensus        72 ~~~~~~~~~~V~~~PTli~~~~g   94 (115)
T d1zmaa1          72 DLQAFRSRYGIPTVPGFVHITDG   94 (115)
T ss_dssp             HHHHHHHHHTCCSSCEEEEEETT
T ss_pred             cccccccccccccccEEEEEECC
Confidence            34567889999999999999885

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.19  Score=27.44  Aligned_cols=35  Identities=14%  Similarity=0.373  Sum_probs=25.3

Q ss_pred             cCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT  116 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~  116 (116)
                      ..++++++.++++. |++++|++... ....|.|+++
T Consensus        52 t~~~~v~~~~~v~~-~~Ivl~k~~de-~~~~~~~~~~   86 (110)
T d1bjxa_          52 TSNSDVFSKYQLDK-DGVVLFKKFDE-GRNNFEGEVT   86 (110)
T ss_dssp             ECCSHHHHHTTCSS-CEEEEEESSSS-SBCCCCSCCC
T ss_pred             ECCHHHHHHcCCCC-CeEEEeccCCc-cccccCCCCC
Confidence            34677889999876 99999987643 3456677654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.04  E-value=0.054  Score=31.41  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=19.4

Q ss_pred             CccchhhhcCCCCCCEEEEecCCccc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      ++.++++++||++.||+++ .+|..+
T Consensus       109 ~~~~la~~lGv~GTPt~~~-~nG~~i  133 (150)
T d1t3ba1         109 KHYELGIQFGVRGTPSIVT-STGELI  133 (150)
T ss_dssp             HHHHHHHHHTCCSSCEEEC-TTSCCC
T ss_pred             HHHHHHHhcCcCCCCEEEE-cCCcEe
Confidence            5668899999999999886 455543

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=0.71  Score=23.19  Aligned_cols=51  Identities=20%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             EEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         6 ~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      .|..+.||.|++.+-.+.+..-      .+....++.+..+.+.+......+|++..
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi------~~e~~~~~~~~~~~~~~~~p~~~VP~L~~   53 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI------PVELHVLLNDDAETPTRMVGQKQVPILQK   53 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC------CCEEEECCTTTTHHHHHHHSSSCCCEEEE
T ss_pred             EEccCCCCchHHHHHHHHHhCC------CcccccccccchHHHHHhCCCCceEEEEE
Confidence            4778899999998877664321      23333344444444445555567787654

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.75  E-value=0.56  Score=24.61  Aligned_cols=36  Identities=6%  Similarity=0.093  Sum_probs=26.2

Q ss_pred             EEEEEcCCCH------HHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc
Q psy3452           4 SILFYSPGCG------YCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP   47 (116)
Q Consensus         4 ~v~F~a~wC~------~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~   47 (116)
                      +..|++++|+      .|.++...++..        ++.+..+|.+.+.+
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~--------~I~y~~iDi~~d~~   45 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNA   45 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHH
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC--------CCceEEEEecCchh
Confidence            5567899995      677777666641        67888888887653

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=0.082  Score=30.75  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             CccchhhhcCCCCCCEEEEecCCccc
Q psy3452          81 EHGPLCKEYDIKGYPTFQYFHYFNKQ  106 (116)
Q Consensus        81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~  106 (116)
                      .+.++++++||++.||+++ .+|..+
T Consensus       109 ~~~~la~~lgv~GTPt~~~-~nG~~v  133 (156)
T d1eeja1         109 DHYALGVQLGVSGTPAVVL-SNGTLV  133 (156)
T ss_dssp             HHHHHHHHHTCCSSSEEEC-TTSCEE
T ss_pred             HHHHHHHHcCCcCCCEEEE-eCCeEe
Confidence            5678899999999999754 556554

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.07  E-value=0.29  Score=30.40  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=26.5

Q ss_pred             EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452           3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC   42 (116)
Q Consensus         3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~   42 (116)
                      |+=+|.+.||+.|-.....+.++++.  +  .+..+..-+
T Consensus         8 VVElFTSqgCssCPpAd~~L~~L~~~--~--~Vi~La~HV   43 (225)
T d2axoa1           8 VVELFTSQGCASCPPADEALRKMIQK--G--DVVGLSYHV   43 (225)
T ss_dssp             EEEEEECTTCTTCHHHHHHHHHHHHH--T--SSEEEEEEC
T ss_pred             EEEEeeCCCCCCCHHHHHHHHHhhCC--C--CEEEEEecc
Confidence            44568899999999999999999764  2  344444443

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.44  E-value=1.6  Score=23.98  Aligned_cols=35  Identities=11%  Similarity=0.020  Sum_probs=24.4

Q ss_pred             eeeEEEEeccCccchhhh-cCCCCCCEEEEecCCcc
Q psy3452          71 RLALAAIDCTEHGPLCKE-YDIKGYPTFQYFHYFNK  105 (116)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~-~~v~~~Pt~~~~~~g~~  105 (116)
                      ++....+|.+......+. ....++||++++++.++
T Consensus        59 ~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~   94 (135)
T d1sena_          59 NFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK   94 (135)
T ss_dssp             TSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred             CcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCe
Confidence            466678888876666654 45567899999965433

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.77  E-value=1.2  Score=23.87  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             cCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452          80 TEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND  114 (116)
Q Consensus        80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~  114 (116)
                      ..+.+++++++++ .|++++|++-.. ....|.|.
T Consensus        53 t~d~~va~~~~v~-~~~vvlfr~fde-~~~~~~~~   85 (102)
T d1a8ya2          53 TFDSKVAKKLTLK-LNEIDFYEAFME-EPVTIPDK   85 (102)
T ss_dssp             ECCHHHHHHHCCC-TTCEEEECTTCS-SEEECSSS
T ss_pred             ECCHHHHHHcCCC-CCCEEEeeecCC-CceecCCC
Confidence            4478888889885 799999977432 35677764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=81.56  E-value=0.13  Score=29.06  Aligned_cols=24  Identities=17%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             CCcccccccCCccccceEEEcCce
Q psy3452          43 TEHGPLCKEYDIKGYPTFHHLALT   66 (116)
Q Consensus        43 ~~~~~~~~~~~v~~~Pt~~~~~~~   66 (116)
                      +.+..+++.|++.++|++++++.+
T Consensus        93 D~~~~~~~~~~v~~~P~~~liD~~  116 (143)
T d2fy6a1          93 DNGGTIAQSLNISVYPSWALIGKD  116 (143)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTT
T ss_pred             ccchHHHHHcCCCccCEEEEECCC
Confidence            567788999999999999999764

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=81.07  E-value=2.7  Score=22.58  Aligned_cols=52  Identities=13%  Similarity=0.219  Sum_probs=31.0

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH   62 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (116)
                      +..+..++||.|++.+-.+...  .+    ......++....+.+ ..-....+|+++.
T Consensus         3 i~LY~~~~sP~~~kvr~~L~~k--~l----~~~~~~v~~~~~~~~-~~~~~~~vP~l~~   54 (113)
T d1z9ha2           3 LTLYQYKTCPFCSKVRAFLDFH--AL----PYQVVEVNPVLRAEI-KFSSYRKVPILVA   54 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--TC----CEEEEECCTTTCGGG-TTCSCCSSCEEEE
T ss_pred             EEEEcCCCChHHHHHHHHHHHc--CC----eeEEeccCcccchhh-ccCcccccccccc
Confidence            4557789999999988777652  11    244444444333332 3334457887653

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.58  E-value=0.74  Score=25.10  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452           4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE   44 (116)
Q Consensus         4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   44 (116)
                      ++.|..|.|..|++....+++     .   ++.+-.+|.-+
T Consensus         2 ~~iY~~p~Cs~srka~~~L~~-----~---~i~~~~idy~k   34 (114)
T d1rw1a_           2 YVLYGIKACDTMKKARTWLDE-----H---KVAYDFHDYKA   34 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-----T---TCCEEEEEHHH
T ss_pred             EEEEECCCChHHHHHHHHHHH-----c---CCCeEEEEccc
Confidence            567889999999998877764     1   45666666543