Psyllid ID: psy3467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
Protein Sequence
MSGVQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSSL
Secondary Structure (PSIPRED)
ccccccccHHEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccEEEccccccccccHHHcEEEHHHHHHHEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHccHHcHEEHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHcccHHHHHEEHHHHHHHHHHHHHHHcHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHccccEccccccHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHEEEEcccccEEEEEccc
Coil and Loop (DISEMBL)
MSGVQHTAYSIFVSRVINtkltrrvhhkdgsfiwttaeqgyVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIqglgegpivpcthallakwipptersrlgafvyagaqfgtvfslplsgllseygfaggwpSIFYVFGLVGAVWSVAFLLYCyeepeahpniaedERKYIMSSVWglagvassppvpwkdivssLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIkengtlsalpYLAMWIFSMFASFIAdsmitsekfshTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLRedgsvkfltkgdnnsvddrglyapgqlwltkndvvgrargflPYVGMVTIYMneypkfksppvpwkdivssLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIkehgsvrvtssl
Flexible Loop (DISEMBL)
MSGVQHTAYSIFVSrvintkltrrvhhkdgsfiwTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDgsvkfltkgdnnsvddrglyapgqlwltkndvvgrARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIkehgsvrvtssl
Low Complexity Region (SEG)
MSGVQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSSL
Disordered region (IsUnstruct)
*****HTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKE**********
Disordered Region (DISOPRED)
MSGVQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDE*********************WKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSSL
Disordered Region (DISEMBL)
MSGVQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSSL
Disordered Region (DISPRO)
MSGVQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGVQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	455	2.2.26 [Sep-21-2011]
Q9V7S5	529	Putative inorganic phosph	yes	N/A	0.595	0.512	0.709	1e-115
O61369	483	Putative inorganic phosph	N/A	N/A	0.648	0.610	0.666	1e-113
Q8BN82	495	Sialin OS=Mus musculus GN	yes	N/A	0.593	0.545	0.424	6e-58
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	N/A	0.595	0.547	0.406	3e-57
Q9NRA2	495	Sialin OS=Homo sapiens GN	yes	N/A	0.593	0.545	0.406	8e-57
Q03567	493	Uncharacterized transport	yes	N/A	0.584	0.539	0.379	7e-48
Q8BLE7	582	Vesicular glutamate trans	no	N/A	0.646	0.505	0.344	4e-47
Q8GX78	541	Probable anion transporte	yes	N/A	0.560	0.471	0.391	4e-47
Q9JI12	582	Vesicular glutamate trans	no	N/A	0.646	0.505	0.344	4e-47
Q9P2U8	582	Vesicular glutamate trans	no	N/A	0.646	0.505	0.344	4e-47

>sp|Q9V7S5|PICO_DROME Putative inorganic phosphate cotransporter OS=Drosophila melanogaster GN=Picot PE=1 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/279 (70%), Positives = 235/279 (84%), Gaps = 8/279 (2%)

Query: 28  KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVA 81
           +DG F W++A QGY+LSSFFYGYV+TQIPFGILAKKYG       GMLINSVFAFLVPVA
Sbjct: 97  QDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVA 156

Query: 82  A-GHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP 140
           A G  +  L  +RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+GA VYAGAQFGT+ S+P
Sbjct: 157 ARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMP 216

Query: 141 LSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWG 200
           LSGLL+EYGF GGWPSIFYVFG+VG VWS+AFL++ +E+P +HP I E E+KYI  S+WG
Sbjct: 217 LSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYINDSLWG 276

Query: 201 LAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTL 260
              V  SPP+P+K I+ SLPF+AIL AHMG NYGYETLMTELPT+MKQVL F++K NG L
Sbjct: 277 -TDVVKSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLL 335

Query: 261 SALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           S+LPYLAMW+FSMF S +AD MI+S++FSHT+TRK+IN+
Sbjct: 336 SSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINS 374

May be an inorganic phosphate cotransporter.
Drosophila melanogaster (taxid: 7227)

>sp|O61369|PICO_DROAN Putative inorganic phosphate cotransporter OS=Drosophila ananassae GN=Picot PE=3 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/306 (66%), Positives = 236/306 (77%), Gaps = 11/306 (3%)

Query: 4   VQHTAYSIFVSRVINTKLTRRV---HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGIL 60
           V HTA         +    R +     +DG F W  A QGY+LSSFFYGYV+TQIPFGIL
Sbjct: 24  VNHTAIKSGEEEYDDECGDRDIPIDDSQDGEFPWNAALQGYILSSFFYGYVITQIPFGIL 83

Query: 61  AKKYG------IGMLINSVFAFLVPVAAGHS-ILALSIIRFIQGLGEGPIVPCTHALLAK 113
           AKKYG       GMLINSVFAFLVPVAA    +  L  +RFIQGLGEGPIVPCTHA+LAK
Sbjct: 84  AKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVWGLCAVRFIQGLGEGPIVPCTHAMLAK 143

Query: 114 WIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL 173
           WIPP ERSR+GA VYAGAQFGT+ S+PLSGLL+EYGF GGWPSIFYVFG+VG VWS+AFL
Sbjct: 144 WIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFL 203

Query: 174 LYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNY 233
           ++ YE+P  HP I E E+KYI  S+WG   V  SPP+P+K IV SLPF+AIL AHMG NY
Sbjct: 204 IFVYEDPSTHPKIDEREKKYINESLWG-TDVIKSPPIPFKSIVKSLPFYAILFAHMGHNY 262

Query: 234 GYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTST 293
           GYETLMTELPT+MKQVL F++K NG LS+LPYLAMW+ SMF S IAD MI+S++FS T+T
Sbjct: 263 GYETLMTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLLSMFISVIADWMISSKRFSLTAT 322

Query: 294 RKIINA 299
           RKIIN+
Sbjct: 323 RKIINS 328

May be an inorganic phosphate cotransporter.

Drosophila ananassae (taxid: 7217)

>sp|Q8BN82|S17A5_MOUSE Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2

 Score =  225 bits (573), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 13/283 (4%)

Query: 24  RVHHKD--GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK------YGIGMLINSVFA 75
           +VHH      + W    QG++L SFFYGY++TQIP G +A +       G+G+L  SVF 
Sbjct: 91  KVHHNHTGKKYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFT 150

Query: 76  FLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT 135
              P+AA   ++ L ++R ++GLGEG   P  HA+ + W PP ERS+L    YAGAQ GT
Sbjct: 151 LFTPLAADLGVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGT 210

Query: 136 VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIM 195
           V SLPLSG++  Y     W  +FY+FG+VG VW + ++    + PE H  I+  E++YI+
Sbjct: 211 VISLPLSGIICYYM---NWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIV 267

Query: 196 SSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK 255
           SS+     ++S   VPW  I+ SLP WAI++AH   N+ + TL+T LPT+MK++L FN++
Sbjct: 268 SSL--KNQLSSQKVVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQ 325

Query: 256 ENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
           ENG LSALPY   W+  +     AD +     FS  S R+I +
Sbjct: 326 ENGFLSALPYFGCWLCMILCGQAADYLRVKWNFSTISVRRIFS 368

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Mus musculus (taxid: 10090)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score =  223 bits (568), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/283 (40%), Positives = 172/283 (60%), Gaps = 12/283 (4%)

Query: 23  RRVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK------YGIGMLINSVFA 75
           + +H++ G  + W    QG++L SFFYGY++TQIP G +A +       G G+   ++F 
Sbjct: 91  KVLHNQTGKKYRWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGIFATAIFT 150

Query: 76  FLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT 135
              P+AA   + AL  +R ++GLGEG   P  HA+ + W PP ERS+L +  YAGAQ GT
Sbjct: 151 LFTPLAADFGVGALVALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSISYAGAQLGT 210

Query: 136 VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIM 195
           V SLPLSG++  Y     W  +FY FG+VG +W + ++    + PE H  I   E++YI+
Sbjct: 211 VVSLPLSGVICYYM---NWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITPYEKEYIL 267

Query: 196 SSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK 255
           SS+     ++S   VPW  ++ SLP WAI++AH   N+ + TL+T LPT+MK+VL FNI+
Sbjct: 268 SSL--KNQLSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQ 325

Query: 256 ENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
           ENG LSA+PYL  W+  + +   AD++     FS    R++ +
Sbjct: 326 ENGFLSAVPYLGCWLCMILSGQAADNLRARWNFSTLWVRRVFS 368

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

>sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2

 Score =  221 bits (563), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 115/283 (40%), Positives = 169/283 (59%), Gaps = 13/283 (4%)

Query: 24  RVHHKD--GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK------YGIGMLINSVFA 75
           +VHH      + W    QG++L SFFYGY++TQIP G +A K       G G+L  +V  
Sbjct: 91  KVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLT 150

Query: 76  FLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT 135
              P+AA   +  L ++R ++GLGEG   P  HA+ + W PP ERS+L +  YAGAQ GT
Sbjct: 151 LFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGT 210

Query: 136 VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIM 195
           V SLPLSG++  Y     W  +FY FG +G  W + ++    + P+ H  I+  E++YI+
Sbjct: 211 VISLPLSGIICYYM---NWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYIL 267

Query: 196 SSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK 255
           SS+     ++S   VPW  I+ SLP WAI++AH   N+ + TL+T LPT+MK++L FN++
Sbjct: 268 SSL--RNQLSSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQ 325

Query: 256 ENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
           ENG LS+LPYL  W+  + +   AD++     FS    R+I +
Sbjct: 326 ENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFS 368

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q03567|YLD2_CAEEL Uncharacterized transporter C38C10.2 OS=Caenorhabditis elegans GN=C38C10.2 PE=1 SV=2

 Score =  191 bits (486), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 152/274 (55%), Gaps = 8/274 (2%)

Query: 30  GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAG 83
           G F W     G VLSSFFYGY+ +QI  G LA +YG      + +L +++   L PVAA 
Sbjct: 74  GEFDWDKQTTGMVLSSFFYGYIGSQIIGGHLASRYGGKRVVFVTILGSALLTLLNPVAAR 133

Query: 84  HSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSG 143
            S  AL+I+R   G  +G   P  H + + W PP E S L    YAGAQ G V  LPLSG
Sbjct: 134 TSEYALAILRAAIGFLQGATFPAMHTMWSVWGPPLELSVLTGVTYAGAQIGNVIVLPLSG 193

Query: 144 LLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAG 203
            L EYGF GGWPSIFY+ G+ G +W+  +     ++P  HP I  +E++YI+++V    G
Sbjct: 194 FLCEYGFDGGWPSIFYIIGVFGVLWTAVWWYVSSDKPATHPRITPEEKQYIVTAVEASMG 253

Query: 204 --VASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLS 261
                 P  PW  I++S   WA    H   ++G  T++  LP+F+K VL  N+   G ++
Sbjct: 254 KDTGKVPSTPWIKILTSPAVWACWAGHFAGDWGAYTMLVSLPSFLKDVLGLNLSSLGAVA 313

Query: 262 ALPYLAMWIFSMFASFIADSMITSEKFSHTSTRK 295
           ++PY+A ++       +AD++ +    S  +TR+
Sbjct: 314 SIPYIAYFLAINAGGVLADTLRSKGILSTLNTRR 347

Caenorhabditis elegans (taxid: 6239)

>sp|Q8BLE7|VGLU2_MOUSE Vesicular glutamate transporter 2 OS=Mus musculus GN=Slc17a6 PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 14/308 (4%)

Query: 3   GVQHTAYSIFVSRVINTKLTR--RVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGIL 60
           G++       V  V N+ + R  +V  +   F W     G +  SFF+GY++TQIP G +
Sbjct: 86  GIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMIHGSFFWGYIITQIPGGYI 145

Query: 61  AKK------YGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKW 114
           A +      +G  +L+ S    L+P AA      +  +R +QGL EG   P  H + +KW
Sbjct: 146 ASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKW 205

Query: 115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL 174
            PP ERSRL    + G+  G V ++PL+G+L +Y    GW S+FYV+G  G VW + +LL
Sbjct: 206 APPLERSRLATTSFCGSYAGAVIAMPLAGILVQY---TGWSSVFYVYGSFGMVWYMFWLL 262

Query: 175 YCYEEPEAHPNIAEDERKYIMSSVW---GLAGVASSPPVPWKDIVSSLPFWAILIAHMGQ 231
             YE P  HP I ++ER+YI  S+     L G       PW+   +S+P +AI++A+  +
Sbjct: 263 VSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCR 322

Query: 232 NYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHT 291
           ++ +  L+   P + ++V  F I + G LSA+P+L M I       IAD + + +  S T
Sbjct: 323 SWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTT 382

Query: 292 STRKIINA 299
           + RKI+N 
Sbjct: 383 TVRKIMNC 390

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Mus musculus (taxid: 10090)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/276 (39%), Positives = 166/276 (60%), Gaps = 21/276 (7%)

Query: 34  WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL 87
           W++A  G + SSFF+GY+LTQI  GI A K+G       G++  S    + P+AA   + 
Sbjct: 165 WSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLP 224

Query: 88  ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL-S 146
            L ++R   G+GEG  +P  + +L+KWIP +ERSR  A VY+G   G+V  L  S +L +
Sbjct: 225 FLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLIT 284

Query: 147 EYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVAS 206
           ++G    WPS+FY FG +G++W + +L + Y  P+  P+++E+E+K I      L G   
Sbjct: 285 KFG----WPSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVI------LGGSKP 334

Query: 207 SPPV---PWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSAL 263
             PV   PWK I+S  P WA++I+H   N+G   L+T +PT+  QVL FN+ E+G L  L
Sbjct: 335 REPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVL 394

Query: 264 PYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           P+L M +F+    +IAD+++ S   S T+ RKI+ +
Sbjct: 395 PWLTMAVFANIGGWIADTLV-SRGLSITNVRKIMQS 429

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9JI12|VGLU2_RAT Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 14/308 (4%)

Query: 3   GVQHTAYSIFVSRVINTKLTR--RVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGIL 60
           G++       V  V N+ + R  +V  +   F W     G +  SFF+GY++TQIP G +
Sbjct: 86  GIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMIHGSFFWGYIITQIPGGYI 145

Query: 61  AKK------YGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKW 114
           A +      +G  +L+ S    L+P AA      +  +R +QGL EG   P  H + +KW
Sbjct: 146 ASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKW 205

Query: 115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL 174
            PP ERSRL    + G+  G V ++PL+G+L +Y    GW S+FYV+G  G VW + +LL
Sbjct: 206 APPLERSRLATTSFCGSYAGAVIAMPLAGILVQY---TGWSSVFYVYGSFGMVWYMFWLL 262

Query: 175 YCYEEPEAHPNIAEDERKYIMSSVW---GLAGVASSPPVPWKDIVSSLPFWAILIAHMGQ 231
             YE P  HP I ++ER+YI  S+     L G       PW+   +S+P +AI++A+  +
Sbjct: 263 VSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCR 322

Query: 232 NYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHT 291
           ++ +  L+   P + ++V  F I + G LSA+P+L M I       IAD + + +  S T
Sbjct: 323 SWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTT 382

Query: 292 STRKIINA 299
           + RKI+N 
Sbjct: 383 TVRKIMNC 390

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also play a role in the endocrine glutamatergic system of other tissues such as pineal gland and pancreas. May also mediate the transport of inorganic phosphate.

Rattus norvegicus (taxid: 10116)

>sp|Q9P2U8|VGLU2_HUMAN Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 14/308 (4%)

Query: 3   GVQHTAYSIFVSRVINTKLTR--RVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGIL 60
           G++       V  V N+ + R  +V  +   F W     G +  SFF+GY++TQIP G +
Sbjct: 86  GIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMIHGSFFWGYIITQIPGGYI 145

Query: 61  AKK------YGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKW 114
           A +      +G  +L+ S    L+P AA      +  +R +QGL EG   P  H + +KW
Sbjct: 146 ASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKW 205

Query: 115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL 174
            PP ERSRL    + G+  G V ++PL+G+L +Y    GW S+FYV+G  G VW + +LL
Sbjct: 206 APPLERSRLATTSFCGSYAGAVIAMPLAGILVQY---TGWSSVFYVYGSFGMVWYMFWLL 262

Query: 175 YCYEEPEAHPNIAEDERKYIMSSVW---GLAGVASSPPVPWKDIVSSLPFWAILIAHMGQ 231
             YE P  HP I ++ER+YI  S+     L G       PW+   +S+P +AI++A+  +
Sbjct: 263 VSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCR 322

Query: 232 NYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHT 291
           ++ +  L+   P + ++V  F I + G LSA+P+L M I       IAD + + +  S T
Sbjct: 323 SWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTT 382

Query: 292 STRKIINA 299
           + RKI+N 
Sbjct: 383 TVRKIMNC 390

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
328709271	617	PREDICTED: putative inorganic phosphate	0.595	0.439	0.766	1e-124
383864612	1200	PREDICTED: trifunctional enzyme subunit	0.648	0.245	0.708	1e-123
328709269	632	PREDICTED: putative inorganic phosphate	0.595	0.428	0.766	1e-123
193709300	553	PREDICTED: putative inorganic phosphate	0.608	0.500	0.744	1e-123
350412710	511	PREDICTED: putative inorganic phosphate	0.646	0.575	0.700	1e-120
340720493	521	PREDICTED: putative inorganic phosphate	0.659	0.575	0.689	1e-119
340720489	528	PREDICTED: putative inorganic phosphate	0.652	0.562	0.689	1e-119
340720491	517	PREDICTED: putative inorganic phosphate	0.652	0.574	0.689	1e-119
345489012	537	PREDICTED: putative inorganic phosphate	0.593	0.502	0.736	1e-117
307212339	474	Putative inorganic phosphate cotransport	0.6	0.575	0.721	1e-117

>gi|328709271|ref|XP_001951876.2| PREDICTED: putative inorganic phosphate cotransporter-like isoform 1 [Acyrthosiphon pisum]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/278 (76%), Positives = 243/278 (87%), Gaps = 7/278 (2%)

Query: 28  KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVA 81
            +GSF+W+T++QGYVLSSFFYGYV+TQIPFGIL+KKYG      +GMLINSVF FLVP++
Sbjct: 194 NEGSFLWSTSQQGYVLSSFFYGYVITQIPFGILSKKYGAKYFLGVGMLINSVFGFLVPLS 253

Query: 82  AGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL 141
           A   I +L  IRFIQGLGEGPIVPCTHALLAKWIPP ERSR+GAFVYAGAQFGTV S+PL
Sbjct: 254 ANFGIFSLISIRFIQGLGEGPIVPCTHALLAKWIPPNERSRMGAFVYAGAQFGTVISMPL 313

Query: 142 SGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGL 201
           SG+LSEYGFAGGWPSIFYVFG +G +WSVAFL   +E+PE+HP I  DERKYI+SSVWG 
Sbjct: 314 SGVLSEYGFAGGWPSIFYVFGAIGTLWSVAFLWLVHEDPESHPTIPHDERKYIISSVWGA 373

Query: 202 AGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLS 261
           AGV SSPPVPW+ I+ S PFWAIL+AHMGQNYGYETLMTELPTFMKQVLHFNIK NGT S
Sbjct: 374 AGV-SSPPVPWRSILKSAPFWAILVAHMGQNYGYETLMTELPTFMKQVLHFNIKANGTYS 432

Query: 262 ALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           +LPYLAMW+FSM AS IAD MI+SE+F+HT TRKI+N+
Sbjct: 433 SLPYLAMWVFSMVASHIADMMISSERFTHTVTRKIVNS 470

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864612|ref|XP_003707772.1| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Megachile rotundata]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/309 (70%), Positives = 249/309 (80%), Gaps = 14/309 (4%)

Query: 4   VQHTAYS-----IFVSRVINTKLTRRVHH--KDGSFIWTTAEQGYVLSSFFYGYVLTQIP 56
           V HTA +     + ++   N  L    H    DG FIW +  QGY+LSSFFYGYV+TQIP
Sbjct: 19  VNHTAITDAHENVQINECGNDTLPASHHDPSSDGDFIWDSKMQGYLLSSFFYGYVITQIP 78

Query: 57  FGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHAL 110
           FGILAK+YG      IGMLINSVF  LVPV+A      L +IRF+QGLGEGPIVPCTHAL
Sbjct: 79  FGILAKRYGSKYFLGIGMLINSVFGLLVPVSARAGYYYLMVIRFVQGLGEGPIVPCTHAL 138

Query: 111 LAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSV 170
           LAKWIPP ERSR+GAFVYAGAQFGTV S+PLSG+LSEYGF GGWPSIFYVFG VG VW +
Sbjct: 139 LAKWIPPNERSRMGAFVYAGAQFGTVISMPLSGILSEYGFDGGWPSIFYVFGAVGTVWCI 198

Query: 171 AFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMG 230
           AFL++ YE+PE HP IAEDE+KYI+S++WG AGV SSPPVPW  IV+SLPFWAILIAHMG
Sbjct: 199 AFLIFIYEDPETHPRIAEDEKKYILSALWGNAGV-SSPPVPWVSIVTSLPFWAILIAHMG 257

Query: 231 QNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSH 290
           QNYGYETLMTELPTFMKQ+LHF+IK NGT+SALPYLAMWIFSM  S +AD MI+S KF+H
Sbjct: 258 QNYGYETLMTELPTFMKQILHFDIKSNGTVSALPYLAMWIFSMVISHVADWMISSGKFNH 317

Query: 291 TSTRKIINA 299
           T TRKIIN+
Sbjct: 318 TITRKIINS 326

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709269|ref|XP_003243916.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 2 [Acyrthosiphon pisum] gi|328709273|ref|XP_003243917.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 3 [Acyrthosiphon pisum]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/278 (76%), Positives = 243/278 (87%), Gaps = 7/278 (2%)

Query: 28  KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVA 81
            +GSF+W+T++QGYVLSSFFYGYV+TQIPFGIL+KKYG      +GMLINSVF FLVP++
Sbjct: 209 NEGSFLWSTSQQGYVLSSFFYGYVITQIPFGILSKKYGAKYFLGVGMLINSVFGFLVPLS 268

Query: 82  AGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL 141
           A   I +L  IRFIQGLGEGPIVPCTHALLAKWIPP ERSR+GAFVYAGAQFGTV S+PL
Sbjct: 269 ANFGIFSLISIRFIQGLGEGPIVPCTHALLAKWIPPNERSRMGAFVYAGAQFGTVISMPL 328

Query: 142 SGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGL 201
           SG+LSEYGFAGGWPSIFYVFG +G +WSVAFL   +E+PE+HP I  DERKYI+SSVWG 
Sbjct: 329 SGVLSEYGFAGGWPSIFYVFGAIGTLWSVAFLWLVHEDPESHPTIPHDERKYIISSVWGA 388

Query: 202 AGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLS 261
           AGV SSPPVPW+ I+ S PFWAIL+AHMGQNYGYETLMTELPTFMKQVLHFNIK NGT S
Sbjct: 389 AGV-SSPPVPWRSILKSAPFWAILVAHMGQNYGYETLMTELPTFMKQVLHFNIKANGTYS 447

Query: 262 ALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           +LPYLAMW+FSM AS IAD MI+SE+F+HT TRKI+N+
Sbjct: 448 SLPYLAMWVFSMVASHIADMMISSERFTHTVTRKIVNS 485

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193709300|ref|XP_001950194.1| PREDICTED: putative inorganic phosphate cotransporter [Acyrthosiphon pisum]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/286 (74%), Positives = 247/286 (86%), Gaps = 9/286 (3%)

Query: 22  TRRVH--HKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSV 73
            + VH    +GSF+W+T++QGYVLSSFFYGYVLTQIPFGIL+K YG      IGMLINSV
Sbjct: 124 NKSVHGMSNEGSFMWSTSQQGYVLSSFFYGYVLTQIPFGILSKTYGAKYFLGIGMLINSV 183

Query: 74  FAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQF 133
           F FLVP++A + I +L  +RFIQGLGEGPIVPCTHALLAKWIPP ERSR+GAFVYAGAQF
Sbjct: 184 FGFLVPLSAHYGIFSLITVRFIQGLGEGPIVPCTHALLAKWIPPNERSRMGAFVYAGAQF 243

Query: 134 GTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKY 193
           GTV S+PLSG+LSEYGFAGGWPSIFYVF  +G +WSVAFL Y +E+PE+HP I  DE+KY
Sbjct: 244 GTVISMPLSGVLSEYGFAGGWPSIFYVFATIGTLWSVAFLWYVHEDPESHPTIPHDEKKY 303

Query: 194 IMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFN 253
           I++SVWG AGV SSPPVPW+ I+ S PFWAIL+AHMGQNYGYETLMTELPTFMKQVLHFN
Sbjct: 304 IINSVWGAAGV-SSPPVPWRSILRSAPFWAILVAHMGQNYGYETLMTELPTFMKQVLHFN 362

Query: 254 IKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           IK NGT S+LPYLAMW+FSM AS +AD MI+SEKF+HT+TRKI+N+
Sbjct: 363 IKANGTYSSLPYLAMWVFSMAASHVADLMISSEKFTHTTTRKIVNS 408

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412710|ref|XP_003489736.1| PREDICTED: putative inorganic phosphate cotransporter-like [Bombus impatiens]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/304 (70%), Positives = 250/304 (82%), Gaps = 10/304 (3%)

Query: 16  VINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGML 69
           ++N+ +T      DG F+W + +QGY+LSSFFYGYVLTQIPFGILAK+YG      +GML
Sbjct: 83  IVNSSITSS---SDGQFVWDSTKQGYLLSSFFYGYVLTQIPFGILAKRYGSKYFLGVGML 139

Query: 70  INSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYA 129
           INS+F  LVP++A      L  +RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+GAFVYA
Sbjct: 140 INSLFGLLVPMSARLGYYYLMGVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAFVYA 199

Query: 130 GAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAED 189
           GAQFGTV S+PLSG+LSEYGF GGWPSIFYVFG VG +W VAFLL  YE+PE+HP I+ED
Sbjct: 200 GAQFGTVISMPLSGILSEYGFDGGWPSIFYVFGAVGTIWCVAFLLMVYEDPESHPRISED 259

Query: 190 ERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQV 249
           E+KYI+S++WG AG ASSPPVPWK IVSSLPFWAILIAHMGQNYGYETLMT LPTFMKQ+
Sbjct: 260 EKKYILSALWGNAG-ASSPPVPWKSIVSSLPFWAILIAHMGQNYGYETLMTLLPTFMKQI 318

Query: 250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGM 309
           LHF+IK NGT+S+LPYLAMWIFSM  S +AD MI+S KF+H STRKIIN+      +  +
Sbjct: 319 LHFDIKSNGTVSSLPYLAMWIFSMLVSHVADWMISSGKFNHGSTRKIINSIGQLGPAIAL 378

Query: 310 IVSS 313
           IV+S
Sbjct: 379 IVAS 382

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720493|ref|XP_003398671.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 3 [Bombus terrestris]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/309 (68%), Positives = 251/309 (81%), Gaps = 9/309 (2%)

Query: 13  VSRVINTKLTRR--VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----- 65
           V+  I +  TRR  +   DG F+W + +QGY+LSSFFYGYVLTQIPFGILAK+YG     
Sbjct: 85  VNSSITSVSTRRDGLDSSDGQFVWDSTKQGYLLSSFFYGYVLTQIPFGILAKRYGSKYFL 144

Query: 66  -IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLG 124
            +GMLINS+F  LVP++A      L  +RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+G
Sbjct: 145 GVGMLINSLFGLLVPMSARFGYYYLMGVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMG 204

Query: 125 AFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHP 184
           AFVYAGAQFGTV S+PLSG+LSEYGF GGWPSIFYVFG VG +W +AFLL  YE+PE+HP
Sbjct: 205 AFVYAGAQFGTVISMPLSGILSEYGFDGGWPSIFYVFGAVGTIWCIAFLLMVYEDPESHP 264

Query: 185 NIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPT 244
            I+EDE+KYI+S++WG AG ASSPPVPW  IV+SLPFWAILIAHMGQNYGYETLMT LPT
Sbjct: 265 RISEDEKKYILSALWGNAG-ASSPPVPWISIVTSLPFWAILIAHMGQNYGYETLMTLLPT 323

Query: 245 FMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQV 304
           FMKQ+LHF+IK NGT+S+LPYLAMWIFSM  S +AD MI+S KF+H STRKIIN+     
Sbjct: 324 FMKQILHFDIKSNGTVSSLPYLAMWIFSMLVSHVADWMISSGKFNHGSTRKIINSIGQLG 383

Query: 305 LSFGMIVSS 313
            +  +IV+S
Sbjct: 384 PAIALIVAS 392

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720489|ref|XP_003398669.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 1 [Bombus terrestris] gi|340720495|ref|XP_003398672.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 4 [Bombus terrestris]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 250/306 (81%), Gaps = 9/306 (2%)

Query: 16  VINTKLTRRVHHK--DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IG 67
           ++N+ +T     K  DG F+W + +QGY+LSSFFYGYVLTQIPFGILAK+YG      +G
Sbjct: 95  IVNSSITSDHAGKSSDGQFVWDSTKQGYLLSSFFYGYVLTQIPFGILAKRYGSKYFLGVG 154

Query: 68  MLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFV 127
           MLINS+F  LVP++A      L  +RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+GAFV
Sbjct: 155 MLINSLFGLLVPMSARFGYYYLMGVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAFV 214

Query: 128 YAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIA 187
           YAGAQFGTV S+PLSG+LSEYGF GGWPSIFYVFG VG +W +AFLL  YE+PE+HP I+
Sbjct: 215 YAGAQFGTVISMPLSGILSEYGFDGGWPSIFYVFGAVGTIWCIAFLLMVYEDPESHPRIS 274

Query: 188 EDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMK 247
           EDE+KYI+S++WG AG ASSPPVPW  IV+SLPFWAILIAHMGQNYGYETLMT LPTFMK
Sbjct: 275 EDEKKYILSALWGNAG-ASSPPVPWISIVTSLPFWAILIAHMGQNYGYETLMTLLPTFMK 333

Query: 248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSF 307
           Q+LHF+IK NGT+S+LPYLAMWIFSM  S +AD MI+S KF+H STRKIIN+      + 
Sbjct: 334 QILHFDIKSNGTVSSLPYLAMWIFSMLVSHVADWMISSGKFNHGSTRKIINSIGQLGPAI 393

Query: 308 GMIVSS 313
            +IV+S
Sbjct: 394 ALIVAS 399

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720491|ref|XP_003398670.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 2 [Bombus terrestris]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 250/306 (81%), Gaps = 9/306 (2%)

Query: 16  VINTKLTRRVHHK--DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IG 67
           ++N+ +T     K  DG F+W + +QGY+LSSFFYGYVLTQIPFGILAK+YG      +G
Sbjct: 84  IVNSSITSDHAGKSSDGQFVWDSTKQGYLLSSFFYGYVLTQIPFGILAKRYGSKYFLGVG 143

Query: 68  MLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFV 127
           MLINS+F  LVP++A      L  +RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+GAFV
Sbjct: 144 MLINSLFGLLVPMSARFGYYYLMGVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAFV 203

Query: 128 YAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIA 187
           YAGAQFGTV S+PLSG+LSEYGF GGWPSIFYVFG VG +W +AFLL  YE+PE+HP I+
Sbjct: 204 YAGAQFGTVISMPLSGILSEYGFDGGWPSIFYVFGAVGTIWCIAFLLMVYEDPESHPRIS 263

Query: 188 EDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMK 247
           EDE+KYI+S++WG AG ASSPPVPW  IV+SLPFWAILIAHMGQNYGYETLMT LPTFMK
Sbjct: 264 EDEKKYILSALWGNAG-ASSPPVPWISIVTSLPFWAILIAHMGQNYGYETLMTLLPTFMK 322

Query: 248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSF 307
           Q+LHF+IK NGT+S+LPYLAMWIFSM  S +AD MI+S KF+H STRKIIN+      + 
Sbjct: 323 QILHFDIKSNGTVSSLPYLAMWIFSMLVSHVADWMISSGKFNHGSTRKIINSIGQLGPAI 382

Query: 308 GMIVSS 313
            +IV+S
Sbjct: 383 ALIVAS 388

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489012|ref|XP_001602874.2| PREDICTED: putative inorganic phosphate cotransporter [Nasonia vitripennis]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/277 (73%), Positives = 235/277 (84%), Gaps = 7/277 (2%)

Query: 29  DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAA 82
           DG F W    QGY+LSSFFYGYVLTQIPFGILAK+YG      +GMLINSVF  LVP++A
Sbjct: 106 DGEFAWDATLQGYLLSSFFYGYVLTQIPFGILAKRYGSKYFLGVGMLINSVFGLLVPISA 165

Query: 83  GHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLS 142
                 L ++RFIQGLGEGPIVPCTHA+LAKW+PP ERSR+GAFVYAGAQFGTV S+PLS
Sbjct: 166 QWGYYWLMLVRFIQGLGEGPIVPCTHAMLAKWVPPNERSRMGAFVYAGAQFGTVISMPLS 225

Query: 143 GLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLA 202
           GLLS++GFAGGWPSIFYVFG VG +W VAFLL  +E+PE+HP I++DE+KYI+SS+WG A
Sbjct: 226 GLLSDHGFAGGWPSIFYVFGTVGTIWCVAFLLMVHEDPESHPRISDDEKKYILSSLWGNA 285

Query: 203 GVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSA 262
           G ASSPPVPWK I +S+PFWAILIAHMGQNYGYETLMTELPTFMKQ+LHFNIK NG +SA
Sbjct: 286 G-ASSPPVPWKSIFTSMPFWAILIAHMGQNYGYETLMTELPTFMKQILHFNIKSNGLVSA 344

Query: 263 LPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           LPYLAMW+FSM  S +AD MI+S +F+HT TRKIIN 
Sbjct: 345 LPYLAMWLFSMVISHVADWMISSGRFNHTITRKIING 381

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212339|gb|EFN88143.1| Putative inorganic phosphate cotransporter [Harpegnathos saltator]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/280 (72%), Positives = 239/280 (85%), Gaps = 7/280 (2%)

Query: 26  HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVP 79
           +  DG F W + EQGY+LS+FFYGYV+TQIPFGILAK+YG      IGMLINS+F  LVP
Sbjct: 53  NSSDGEFSWCSKEQGYLLSAFFYGYVITQIPFGILAKRYGSKYFLGIGMLINSLFGLLVP 112

Query: 80  VAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSL 139
            +A      L ++RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+GAFVYAGAQFGT+ S+
Sbjct: 113 ASAHFGYFWLIVVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAFVYAGAQFGTIISM 172

Query: 140 PLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVW 199
           PLSG+LSEYGFAGGWPSIFYVFG VG +W + FL++ +E+PE  P+IAEDE+KYI+S++W
Sbjct: 173 PLSGVLSEYGFAGGWPSIFYVFGTVGTLWCIFFLMFVHEDPEKDPHIAEDEKKYIVSALW 232

Query: 200 GLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGT 259
           G AG ASSPPVPWK IV+SLPFWAILIAHMG NYGYETLMTELPT+MKQ+LHF+IK NG+
Sbjct: 233 GSAG-ASSPPVPWKSIVTSLPFWAILIAHMGHNYGYETLMTELPTYMKQILHFDIKSNGS 291

Query: 260 LSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           +S+LPYLAMWIFSM  S IAD MI+S +F+HTSTRKIIN+
Sbjct: 292 VSSLPYLAMWIFSMVISHIADWMISSGRFNHTSTRKIINS 331

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
FB|FBgn0024315	529	Picot "Picot" [Drosophila mela	0.595	0.512	0.709	2.4e-108
UNIPROTKB|O61369	483	Picot "Putative inorganic phos	0.595	0.561	0.713	1.9e-106
FB|FBgn0029727	479	CG6978 [Drosophila melanogaste	0.630	0.599	0.521	1.2e-81
FB|FBgn0030452	559	MFS10 "Major Facilitator Super	0.375	0.305	0.502	7.7e-68
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.591	0.543	0.416	5e-60
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.593	0.545	0.427	6.4e-60
RGD|1311388	495	Slc17a5 "solute carrier family	0.593	0.545	0.431	6.4e-60
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.569	0.535	0.433	4.6e-57
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.591	0.541	0.416	5.9e-57
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.593	0.545	0.409	5.9e-57

FB|FBgn0024315 Picot "Picot" [Drosophila melanogaster (taxid:7227)]

 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 198/279 (70%), Positives = 235/279 (84%)

Query:    28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVA 81
             +DG F W++A QGY+LSSFFYGYV+TQIPFGILAKKYG       GMLINSVFAFLVPVA
Sbjct:    97 QDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVA 156

Query:    82 A-GHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP 140
             A G  +  L  +RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+GA VYAGAQFGT+ S+P
Sbjct:   157 ARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMP 216

Query:   141 LSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWG 200
             LSGLL+EYGF GGWPSIFYVFG+VG VWS+AFL++ +E+P +HP I E E+KYI  S+WG
Sbjct:   217 LSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYINDSLWG 276

Query:   201 LAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTL 260
                V  SPP+P+K I+ SLPF+AIL AHMG NYGYETLMTELPT+MKQVL F++K NG L
Sbjct:   277 -TDVVKSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLL 335

Query:   261 SALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
             S+LPYLAMW+FSMF S +AD MI+S++FSHT+TRK+IN+
Sbjct:   336 SSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINS 374

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=IEA

GO:0035435 "phosphate ion transmembrane transport" evidence=IEA

UNIPROTKB|O61369 Picot "Putative inorganic phosphate cotransporter" [Drosophila ananassae (taxid:7217)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 199/279 (71%), Positives = 229/279 (82%)

Query:    28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVA 81
             +DG F W  A QGY+LSSFFYGYV+TQIPFGILAKKYG       GMLINSVFAFLVPVA
Sbjct:    51 QDGEFPWNAALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVA 110

Query:    82 AGHS-ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP 140
             A    +  L  +RFIQGLGEGPIVPCTHA+LAKWIPP ERSR+GA VYAGAQFGT+ S+P
Sbjct:   111 AREGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMP 170

Query:   141 LSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWG 200
             LSGLL+EYGF GGWPSIFYVFG+VG VWS+AFL++ YE+P  HP I E E+KYI  S+WG
Sbjct:   171 LSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVYEDPSTHPKIDEREKKYINESLWG 230

Query:   201 LAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTL 260
                V  SPP+P+K IV SLPF+AIL AHMG NYGYETLMTELPT+MKQVL F++K NG L
Sbjct:   231 -TDVIKSPPIPFKSIVKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLL 289

Query:   261 SALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
             S+LPYLAMW+ SMF S IAD MI+S++FS T+TRKIIN+
Sbjct:   290 SSLPYLAMWLLSMFISVIADWMISSKRFSLTATRKIINS 328

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

FB|FBgn0029727 CG6978 [Drosophila melanogaster (taxid:7227)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 158/303 (52%), Positives = 209/303 (68%)

Query:     4 VQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK 63
             V HTA S       +TK + +   +DG F W+   QGY+LSSFFYGYV+TQIPFG++ K 
Sbjct:    70 VNHTAIS-------HTKSSTQSKERDGDFEWSYKLQGYILSSFFYGYVITQIPFGLMIKY 122

Query:    64 YGI------GMLINSVFAFLVPVAA-GHSILALSIIRFIQGLGEGPIVPCTHALLAKWIP 116
             YG       GM+INS+ AF +P++A    ++ L ++RFIQGLGEGPIVPC+H+LLA+W+P
Sbjct:   123 YGARHFLGWGMMINSLAAFFIPISARSGGVVGLCVVRFIQGLGEGPIVPCSHSLLAQWVP 182

Query:   117 PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYC 176
             P ERS  GA VYAGAQFGT+ S+PLSGLL+ YGF GGWPSIFY+FGL   +W + F+   
Sbjct:   183 PNERSLAGAAVYAGAQFGTIVSMPLSGLLAHYGFDGGWPSIFYIFGLFSTIWCIIFICLV 242

Query:   177 YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYE 236
              E P     I+E ER++IM ++W  A       +P+  I  S PF+AIL+AH G NYGYE
Sbjct:   243 QESPAVSTRISEAERRHIMEAIWQ-AQPEERSRIPFLGIAKSPPFYAILVAHAGHNYGYE 301

Query:   237 TLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKI 296
             TLMT LPT+M +VL+ NI+ NG +S+LPYLAMWI ++    +AD +I    FS T  RK+
Sbjct:   302 TLMTMLPTYMYRVLNVNIRTNGIISSLPYLAMWILAIVFGILADCLIR-RNFSITVVRKL 360

Query:   297 INA 299
             +N+
Sbjct:   361 MNS 363

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0030452 MFS10 "Major Facilitator Superfamily Transporter 10" [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
 Identities = 89/177 (50%), Positives = 120/177 (67%)

Query:    28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILA-----KK-YGIGMLINSVFAFLVPVA 81
             K+G F+W  A QG VL SFFYGYVLTQ+P G +A     KK YG G+LI +VF  + P+A
Sbjct:   131 KEGEFVWDEATQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTLITPLA 190

Query:    82 AGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL 141
             A   +  L ++R ++G+GEG   P  HA+LA WIPP ER++  A VYAG+  GTV S+PL
Sbjct:   191 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL 250

Query:   142 SGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSV 198
             +G L    F GGWPS FY+FGL+G +W +A++   Y++P  HP I+E ER+YI  S+
Sbjct:   251 AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESEREYIERSL 307

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 117/281 (41%), Positives = 174/281 (61%)

Query:    25 VHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFL 77
             +H++ G  + W    QG++L SFFYGY++TQIP G +A K G       G+L  +VF   
Sbjct:    93 LHNQTGKRYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLF 152

Query:    78 VPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVF 137
              P+AA   + AL ++R ++GLGEG   P  HA+ + W PP ERS+L +  YAGAQ GTV 
Sbjct:   153 TPIAADFGVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVI 212

Query:   138 SLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSS 197
             SLPLSG++  Y     W  +FY+FG+VG +W + ++    E PE H  I+  E++YI+SS
Sbjct:   213 SLPLSGIICFYM---NWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSS 269

Query:   198 VWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEN 257
             +     ++S   VPW  ++ SLP WAI++AH   N+ + TL+T LPT+MK++L FN++EN
Sbjct:   270 LKNQ--LSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQEN 327

Query:   258 GTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
             G LSALPY   W+  + +   AD++     FS    R++ +
Sbjct:   328 GLLSALPYFGCWLCMILSGQAADNLRAKWNFSTICVRRVFS 368

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 121/283 (42%), Positives = 173/283 (61%)

Query:    24 RVHHKD-GS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFA 75
             +VHH   G  + W    QG++L SFFYGY++TQIP G +A + G      +G+L  SVF 
Sbjct:    91 KVHHNHTGKKYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFT 150

Query:    76 FLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT 135
                P+AA   ++ L ++R ++GLGEG   P  HA+ + W PP ERS+L    YAGAQ GT
Sbjct:   151 LFTPLAADLGVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGT 210

Query:   136 VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIM 195
             V SLPLSG++  Y     W  +FY+FG+VG VW + ++    + PE H  I+  E++YI+
Sbjct:   211 VISLPLSGIICYYM---NWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIV 267

Query:   196 SSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK 255
             SS+     ++S   VPW  I+ SLP WAI++AH   N+ + TL+T LPT+MK++L FN++
Sbjct:   268 SSLKNQ--LSSQKVVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQ 325

Query:   256 ENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
             ENG LSALPY   W+  +     AD +     FS  S R+I +
Sbjct:   326 ENGFLSALPYFGCWLCMILCGQAADYLRVKWNFSTISVRRIFS 368

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 122/283 (43%), Positives = 174/283 (61%)

Query:    24 RVHHKD-GS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFA 75
             +VHH   G  + W    QG++L SFFYGY++TQIP G +A + G      +G+L  +VF 
Sbjct:    91 KVHHNHTGKKYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFT 150

Query:    76 FLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT 135
                P+AA   ++AL ++R ++GLGEG   P  HA+ + W PP ERS+L    YAGAQ GT
Sbjct:   151 LFTPLAADLGVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGT 210

Query:   136 VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIM 195
             V SLPLSG++  Y     W  +FY+FGLVG VW + ++    + PE H  I+  E++YI+
Sbjct:   211 VISLPLSGIICYYM---NWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIV 267

Query:   196 SSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK 255
             SS+     ++S   VPW  I+ SLP WAI++AH   N+ + TL+T LPT+MK++L FN++
Sbjct:   268 SSLKNQ--LSSQKVVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQ 325

Query:   256 ENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
             ENG LSALPY   W+  +     AD +     FS  S R+I +
Sbjct:   326 ENGFLSALPYFGCWLCMIVCGQAADYLRVKWNFSTISVRRIFS 368

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 117/270 (43%), Positives = 164/270 (60%)

Query:    32 FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHS 85
             + W    QG++L SFFYGY++TQIP G LA K G       G+   SVF  L P+AA   
Sbjct:    90 YSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADLG 149

Query:    86 ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL 145
             +  L  +R ++GLGEG   P  H++ + W PP ERS+L +  YAGAQ GTV SLPLSGL+
Sbjct:   150 VGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLI 209

Query:   146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVA 205
               Y     W  +FY+FG +G +W   ++    ++PE H +I+  ER+YI+SS+       
Sbjct:   210 CYYM---NWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQ 266

Query:   206 SSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPY 265
              S  VPW+ I+ SLP WAI++AH   N+ + TL+T LPT+MK++L F+ +ENG LSALPY
Sbjct:   267 KS--VPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPY 324

Query:   266 LAMWIFSMFASFIADSMITSEKFSHTSTRK 295
                W+  + +  IAD +   + FS    RK
Sbjct:   325 FGCWLCIILSGQIADHLREKQNFSTVCVRK 354

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 118/283 (41%), Positives = 173/283 (61%)

Query:    25 VHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK------YGIGMLINSVFAFL 77
             +H++ G  + W    QG++L SFFYGY++TQIP G +A +       G G+L  SVF  L
Sbjct:    93 LHNQTGKKYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLL 152

Query:    78 VPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYA--GAQFGT 135
              P+AA   + AL  +R ++GLGEG   P  HA+ + W PP ERS+L +  YA  GAQ GT
Sbjct:   153 TPLAADFGVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGT 212

Query:   136 VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIM 195
             V SLPLSG++  Y     W  +FY+FGLVG +W + +     + P+ H  I+  E++YI+
Sbjct:   213 VVSLPLSGIICFYL---NWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYIL 269

Query:   196 SSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK 255
             SS+     ++S   VPW  ++ SLP WAI++AH   N+ + TL+T LPT+MK+VL FNI+
Sbjct:   270 SSLRNQ--LSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQ 327

Query:   256 ENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
             ENG LSA+PY   W+  + +   AD++     FS    R++ +
Sbjct:   328 ENGFLSAVPYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFS 370

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 116/283 (40%), Positives = 170/283 (60%)

Query:    24 RVHHKD-GS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFA 75
             +VHH   G  + W    QG++L SFFYGY++TQIP G +A K G       G+L  +V  
Sbjct:    91 KVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLT 150

Query:    76 FLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT 135
                P+AA   +  L ++R ++GLGEG   P  HA+ + W PP ERS+L +  YAGAQ GT
Sbjct:   151 LFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGT 210

Query:   136 VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIM 195
             V SLPLSG++  Y     W  +FY FG +G  W + ++    + P+ H  I+  E++YI+
Sbjct:   211 VISLPLSGIICYYM---NWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYIL 267

Query:   196 SSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK 255
             SS+     ++S   VPW  I+ SLP WAI++AH   N+ + TL+T LPT+MK++L FN++
Sbjct:   268 SSLRNQ--LSSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQ 325

Query:   256 ENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIIN 298
             ENG LS+LPYL  W+  + +   AD++     FS    R+I +
Sbjct:   326 ENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFS 368

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V7S5	PICO_DROME	No assigned EC number	0.7096	0.5956	0.5122	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	455
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	3e-99
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	5e-25
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-24
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-22
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	4e-13
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	6e-11
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-10
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-08
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	9e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-04
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	5e-04
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.001
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.001

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  304 bits (781), Expect = 3e-99
 Identities = 127/278 (45%), Positives = 171/278 (61%), Gaps = 9/278 (3%)

Query: 28  KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY------GIGMLINSVFAFLVPVA 81
           K+ +F W+ A QG +LSS FYG ++ QIP G LA KY      GIGM ++SV + ++P A
Sbjct: 67  KNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA 126

Query: 82  AGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL 141
           AG  I  +   R IQGL +G + P TH ++ KW PP ERSRL     +G Q GT   LP+
Sbjct: 127 AGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPI 186

Query: 142 SGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGL 201
           SG L E    GGWP IFYVFG+VG  WS+ + ++  ++P  HP I++ E+KYI SS+ G 
Sbjct: 187 SGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQG- 243

Query: 202 AGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLS 261
              ++   +P K I  SLP WAI  A  G  + Y  L T LPTF+  VL  + KENG LS
Sbjct: 244 QKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLS 303

Query: 262 ALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
           +LPYL  W+ S+FA ++AD + +S+  S T+ RKI N 
Sbjct: 304 SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG 341

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  105 bits (265), Expect = 5e-25
 Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 18/287 (6%)

Query: 35  TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILA 88
           + A+ GYV S+F +GYV+ Q P G L  ++G      + ++I  VF  L   A     ++
Sbjct: 27  SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA--YVS 84

Query: 89  LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY 148
           L I+R + G  E P  P    ++A W P +ER+   +   +    G +   PL G +   
Sbjct: 85  LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI- 143

Query: 149 GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSP 208
                W   F + G++G +W V +L +  + P+       +E KYI+            P
Sbjct: 144 --HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ-KAKWLTEEEKYIVVGGLLAEQQGKGP 200

Query: 209 PVPWKDIVSSL----PFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALP 264
             P K  +  L      W + +     N G    +T  PT++ Q    +I E G +++LP
Sbjct: 201 STPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLP 260

Query: 265 YLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIV 311
            +  +I  +    ++D  +   +       +        VLS  M  
Sbjct: 261 GIVGFIGMILGGRLSD--LLLRRGKSLVFARKTAIIAGLVLSLLMFA 305

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  104 bits (260), Expect = 1e-24
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 25/258 (9%)

Query: 31  SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGH 84
               +  E G +L++F  GY L Q   G L+ ++G      IG+L+ ++   L+      
Sbjct: 26  DLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLL--LFAS 83

Query: 85  SILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL 144
           S+  L ++R +QGLG G + P   AL+A W PP ER R    + AG   G      L GL
Sbjct: 84  SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL 143

Query: 145 LSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGV 204
           L+      GW + F +  ++  + +V   L     P         E              
Sbjct: 144 LASL---FGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEA------------ 188

Query: 205 ASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALP 264
             +P VP   ++   P   +L+A +   + +  L+T LP +  +VL  +    G L  L 
Sbjct: 189 -PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQ-EVLGLSALLAGLLLGLA 246

Query: 265 YLAMWIFSMFASFIADSM 282
            L   I  +    ++D +
Sbjct: 247 GLLGAIGRLLLGRLSDRL 264

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 64/299 (21%), Positives = 122/299 (40%), Gaps = 59/299 (19%)

Query: 34  WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL 87
            + ++ G ++S+F  GY L  +  G L+ ++G      +G+L+ ++ + L+  A   S+ 
Sbjct: 31  LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLW 88

Query: 88  ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE 147
            L + RF+ GLG G + P   AL+A+W PP ER R      AG   G +    L GLL+E
Sbjct: 89  LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

Query: 148 YGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASS 207
                GW  +F +  ++G + ++  L                                  
Sbjct: 149 SL---GWRWLFLILAILGLLLALLLLFLL------------------------------- 174

Query: 208 PPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLA 267
                           + +A    ++GY  L+T LP ++++VL  +  E G L +L  L 
Sbjct: 175 -----------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG 223

Query: 268 MWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTG 326
             + ++    ++D      +        +I   L  +    + ++ +L +    ++L G
Sbjct: 224 GILGALLGGLLSD------RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG 276

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 23/53 (43%), Positives = 28/53 (52%)

Query: 395 KSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHG 447
               +P K I  SLP WAI  A  G  + Y  L T LPTF+  VL  + KE+G
Sbjct: 248 TRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENG 300

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 42/272 (15%), Positives = 95/272 (34%), Gaps = 22/272 (8%)

Query: 31  SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGH 84
               +  + G +LSSF   Y +++   G ++ +        IG+++ ++           
Sbjct: 24  EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF--GFST 81

Query: 85  SILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL 144
           S+  ++ +  + G+ +G   P     + KW   +ER    +F       G     PL  +
Sbjct: 82  SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL--V 139

Query: 145 LSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGV 204
           L        W  +F V G++  + S+   L   + P++   +   E         G A  
Sbjct: 140 LFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQS-CGLPPAEEMPN-EEPDGDAEK 197

Query: 205 ASSPPVPWK----DIVSSLPFWAILIAH---MGQNYGYETLMTELPTFMKQVLHFNIKEN 257
                   +     ++ +   W I + +        G        P ++ Q   F+ ++ 
Sbjct: 198 KEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDW---SPLYLTQEKGFSKEKA 254

Query: 258 GTLSALPYLAMWIFSMFASFIADSMITSEKFS 289
                L  L   + ++ A +++D +    +  
Sbjct: 255 SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGP 286

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 18/143 (12%)

Query: 40  GYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIR 93
           GY L    Y         G+L  ++G      +G+ I  +       A   +I  L I R
Sbjct: 6   GYALGQLIYS-----PLSGLLTDRFGRKPVLLVGLFIFVLST--AMFALSSNITVLIIAR 58

Query: 94  FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG 153
           F+QG G    +    AL+A   PP ER      + AG   G +   PL G+L+++    G
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LG 115

Query: 154 WPSIFYVFGLVGAVWSVAFLLYC 176
           W + F    ++        LL  
Sbjct: 116 WRAPFLFLAILALA--AFILLAF 136

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 59/271 (21%), Positives = 100/271 (36%), Gaps = 35/271 (12%)

Query: 35  TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILA 88
              + G++ S+   G     + FG LA + G        +L+ SVF  L  +A   ++  
Sbjct: 50  DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQ 107

Query: 89  LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY 148
           L I+RF+ GLG G ++P  +AL++++ P   R      ++ G   G      L+G L   
Sbjct: 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL--- 164

Query: 149 GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEP-----EAHPNIAEDERKYIMSSVWGLAG 203
               GW S+FYV G+   +  +  L+    E         P         I   +   A 
Sbjct: 165 IPVFGWRSLFYVGGIAPLLL-LLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQ 223

Query: 204 ----VASSPPVPWKDIV----------SSLPFWAILIAHMGQNYGYETLMTELPTFMKQV 249
                  +     + +            ++  W +         G   L   LP  M + 
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFM---LLVGVYFLTNWLPKLMVE- 279

Query: 250 LHFNIKENGTLSALPYLAMWIFSMFASFIAD 280
           L F++    T  AL      I S+   ++AD
Sbjct: 280 LGFSLSLAATGGALFNFGGVIGSIIFGWLAD 310

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 63/273 (23%), Positives = 98/273 (35%), Gaps = 53/273 (19%)

Query: 53  TQIPF-GILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVP 105
             IP  G LAK++G      I     ++ + L  VA   ++  + I R IQG G GP++P
Sbjct: 52  ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLELMIIFRVIQGFGGGPLIP 109

Query: 106 CTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG 165
            + + L    PP +R R  A               L G + E      W  IF +   +G
Sbjct: 110 LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE---NYHWRWIFLINVPIG 166

Query: 166 A-VWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLA----GVASSPPVPWKD------ 214
             V  VAF +   ++P A  N   D    ++ SV GL     G++  P   W D      
Sbjct: 167 IIVVVVAFFILPRDKPAASENF--DFLGLLLLSV-GLGSLLYGLSEGPERGWFDSNEILI 223

Query: 215 --IVSSLPFWAILIAHMGQN-------------------------YGYETLMTELPTFMK 247
             I   +   A ++  +  +                          G       LP +++
Sbjct: 224 LSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQ 283

Query: 248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIAD 280
           QVL +   + G       LA  + S  A  + D
Sbjct: 284 QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD 316

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 32  FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-------IGMLINSVFAFLVPVAAGH 84
              + AE G +LS F  G +L  +  G+L+ + G       IG+L+ ++   L+ +A   
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265

Query: 85  SILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL 144
           ++L +++   + G G G   P    L ++  PP  R             G      L+GL
Sbjct: 266 ALLLVAL--LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323

Query: 145 LSEYGFAGGWPSIFYVFGLVGAVWSVAFLLY 175
           L +    GG+  +F +   +  + ++  LL 
Sbjct: 324 LLD---TGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 10/161 (6%)

Query: 27  HKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPV 80
              G+   +T   G ++S F  G ++  +  G L  ++G      IG ++  + A L   
Sbjct: 36  TSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGF 95

Query: 81  AAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP 140
           A G S   L + R I GLG G I       +++  P   R  LG+    G  FG + +  
Sbjct: 96  AKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAI 155

Query: 141 LSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE 181
           +   L++Y  + GW         +  V ++  L+     PE
Sbjct: 156 IGLGLNKYSNSDGWRIPLG----LQFVPAILLLIGLLFLPE 192

Length = 449

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 31/252 (12%)

Query: 35  TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILA 88
           +    G +++++  G  L      +L  +          + +  V   L  +A   ++L 
Sbjct: 46  SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLL 105

Query: 89  LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY 148
           L+  R + GL  G       AL A+ +PP +R R  A V+ G    TV  +PL   L + 
Sbjct: 106 LA--RALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL 163

Query: 149 GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSP 208
               GW + F    ++     +A LL     P +      +    +   +  L  +   P
Sbjct: 164 ---FGWRATFLAIAVLAL---LALLLLWKLLPPS------EISGSLPGPLRTLLRLLRRP 211

Query: 209 PVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAM 268
            V              L+A      G+  L T +  F++ V  F++     +     +A 
Sbjct: 212 GV-----------LLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAG 260

Query: 269 WIFSMFASFIAD 280
           +I ++    +AD
Sbjct: 261 FIGNLLGGRLAD 272

Length = 394

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 58  GILAKKYGIG-MLINSVFAF-LVPVAAGH--SILALSIIRFIQGLGEGPIVPCTHALLAK 113
           G LA + G   +LI SV  F L  +A        +L + R + G+G G  +P   AL ++
Sbjct: 71  GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSE 130

Query: 114 WIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLV 164
            + P  R    + +Y G  FG   +  +  L +       W  IFYV G+ 
Sbjct: 131 AVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG---DAAWRHIFYVGGVG 178

Length = 406

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 32  FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY------GIGMLINSVFAFLVPVAAGHS 85
              +  + G + S+F   Y +++   G+L+ +         G++++++   L       S
Sbjct: 59  GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILF--GFSPS 116

Query: 86  ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL 145
           +   +++  + G  +G   P     +  W    ER    +        G     PL  LL
Sbjct: 117 LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGG-ALAPLVALL 175

Query: 146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEA--HPNIAE 188
           + + F GGW + FY  G++  + ++  L    + P++   P I E
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE 220

Length = 448

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 24/147 (16%)

Query: 44  SSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIRFIQG 97
           S FF G +L    FG L+ ++G      +  L+ +V   L   +  +++    + R + G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL--VFRLLVG 191

Query: 98  LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFA---GGW 154
           +G G I      L  +++P  +R+ +G  +         FSL   GL+     A     W
Sbjct: 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLI------QVFFSL---GLVLLPLVAYFIPDW 242

Query: 155 PSIFYVFGLVGAVWSVAFLLYCYEEPE 181
             +     L  ++ +  F L  +  PE
Sbjct: 243 RWLQ----LAVSLPTFLFFLLSWFVPE 265

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 40/295 (13%)

Query: 43  LSSFFYGYVLTQIPFGILAKKYG------IGMLI---NSVFAFLVPVAAGHSILALSIIR 93
           L+ +  G+   Q+ +G L+ +YG      +G+ I   +S+   L       +I  L ++R
Sbjct: 46  LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-----NIETLLVLR 100

Query: 94  FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG 153
           F+Q  G       + AL+    P  E SR+ + +          +  L G +  +     
Sbjct: 101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LS 157

Query: 154 WPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDE-RKYIMS--------SVWGLAGV 204
           W +IF    L G    +   L  +  PE  P  A  +   Y  +          WG A +
Sbjct: 158 WHAIFAFLSLAGI---LLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALI 214

Query: 205 ASSPPVPWKDIVSSLPFWAILIAHMG---QNYGYETLMTELPT-FMKQVLHFNIKENGTL 260
             +    +    S  PF  + I  MG     +G    +  +   F   +    IK+ G  
Sbjct: 215 YGASFGGFFAFFSGAPF--VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK 272

Query: 261 SALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSAL 315
           S L  + + +F    S +   +  +      S   II   ++  +   MI S A+
Sbjct: 273 SLLR-MGLILF--AVSAVL--LEITAILGLGSWAMIIGPMMFVGIGNSMISSIAM 322

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	455
KOG2532|consensus	466		99.98
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK03545	390	putative arabinose transporter; Provisional	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
PRK11663	434	regulatory protein UhpC; Provisional	99.95
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.94
PRK10091	382	MFS transport protein AraJ; Provisional	99.94
KOG2533|consensus	495		99.94
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.94
PRK09705	393	cynX putative cyanate transporter; Provisional	99.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.94
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.94
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.94
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.94
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.93
PLN00028	476	nitrate transmembrane transporter; Provisional	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
PRK12307	426	putative sialic acid transporter; Provisional	99.93
PRK03699	394	putative transporter; Provisional	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.93
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.93
PRK10504	471	putative transporter; Provisional	99.93
TIGR00805	633	oat sodium-independent organic anion transporter.	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.92
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.92
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
KOG1330|consensus	493		99.92
PRK10133	438	L-fucose transporter; Provisional	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK11043	401	putative transporter; Provisional	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.91
PRK03633	381	putative MFS family transporter protein; Provision	99.91
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.91
PRK15075	434	citrate-proton symporter; Provisional	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.9
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
KOG0569|consensus	485		99.89
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.89
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.89
TIGR00901	356	2A0125 AmpG-related permease.	99.88
PRK12382	392	putative transporter; Provisional	99.88
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.88
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.88
PRK05122	399	major facilitator superfamily transporter; Provisi	99.88
KOG3764|consensus	464		99.87
PRK10489	417	enterobactin exporter EntS; Provisional	99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.87
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.87
PRK09874	408	drug efflux system protein MdtG; Provisional	99.87
PRK10054	395	putative transporter; Provisional	99.87
PRK11010	491	ampG muropeptide transporter; Validated	99.87
PRK11902	402	ampG muropeptide transporter; Reviewed	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.84
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.83
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.83
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.82
PRK09528	420	lacY galactoside permease; Reviewed	99.82
KOG0254|consensus	513		99.81
KOG2504|consensus	509		99.81
KOG2532|consensus	466		99.8
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.79
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.79
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.79
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.78
KOG0253|consensus	528		99.78
KOG0255|consensus	521		99.77
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.77
KOG2615|consensus	451		99.77
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.76
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.75
PTZ00207	591	hypothetical protein; Provisional	99.72
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.72
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.65
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.65
KOG0252|consensus	538		99.63
KOG3626|consensus	735		99.59
PF13347	428	MFS_2: MFS/sugar transport protein	99.59
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.58
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.58
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.57
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.55
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.54
PRK09669	444	putative symporter YagG; Provisional	99.52
PRK10429	473	melibiose:sodium symporter; Provisional	99.52
KOG2563|consensus	480		99.47
PRK09848	448	glucuronide transporter; Provisional	99.45
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.44
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.44
KOG4686|consensus	459		99.43
PRK11462	460	putative transporter; Provisional	99.39
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.39
COG2211	467	MelB Na+/melibiose symporter and related transport	99.35
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.33
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.31
KOG2325|consensus	488		99.3
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.28
PRK10642	490	proline/glycine betaine transporter; Provisional	99.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.25
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.25
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.25
PRK05122	399	major facilitator superfamily transporter; Provisi	99.22
PRK09528	420	lacY galactoside permease; Reviewed	99.22
PRK10489	417	enterobactin exporter EntS; Provisional	99.19
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.18
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.17
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.17
PRK09874	408	drug efflux system protein MdtG; Provisional	99.16
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.16
KOG2816|consensus	463		99.16
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.15
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.14
PRK15011	393	sugar efflux transporter B; Provisional	99.14
PRK03633	381	putative MFS family transporter protein; Provision	99.13
PRK12382	392	putative transporter; Provisional	99.12
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.11
PRK03545	390	putative arabinose transporter; Provisional	99.08
PRK11663	434	regulatory protein UhpC; Provisional	99.07
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.05
PRK03893	496	putative sialic acid transporter; Provisional	99.04
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.04
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.03
PRK09705	393	cynX putative cyanate transporter; Provisional	99.02
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.01
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.99
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.99
PRK11010	491	ampG muropeptide transporter; Validated	98.95
PRK03699	394	putative transporter; Provisional	98.95
TIGR00893	399	2A0114 d-galactonate transporter.	98.93
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.91
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.86
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.85
TIGR00891	405	2A0112 putative sialic acid transporter.	98.83
KOG4686|consensus	459		98.83
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.81
PRK12307	426	putative sialic acid transporter; Provisional	98.79
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.75
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.74
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.74
TIGR00900	365	2A0121 H+ Antiporter protein.	98.73
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.7
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.7
PRK09952	438	shikimate transporter; Provisional	98.7
TIGR00895	398	2A0115 benzoate transport.	98.69
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.69
PRK10504	471	putative transporter; Provisional	98.69
PLN00028	476	nitrate transmembrane transporter; Provisional	98.68
PRK10054	395	putative transporter; Provisional	98.68
PRK15075	434	citrate-proton symporter; Provisional	98.68
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.67
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.63
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.63
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.63
KOG2504|consensus	509		98.62
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.61
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.58
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.55
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.54
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.53
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.53
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.52
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.52
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.52
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.51
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.51
PRK11902	402	ampG muropeptide transporter; Reviewed	98.51
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.5
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.49
TIGR00898	505	2A0119 cation transport protein.	98.48
PRK10091	382	MFS transport protein AraJ; Provisional	98.46
TIGR00805	633	oat sodium-independent organic anion transporter.	98.44
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.42
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.41
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.4
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.37
PRK09848	448	glucuronide transporter; Provisional	98.36
KOG2533|consensus	495		98.35
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.34
COG0477	338	ProP Permeases of the major facilitator superfamil	98.32
TIGR00901	356	2A0125 AmpG-related permease.	98.29
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.27
PRK10133	438	L-fucose transporter; Provisional	98.26
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.21
PRK11043	401	putative transporter; Provisional	98.21
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.17
PRK10429	473	melibiose:sodium symporter; Provisional	98.17
KOG3764|consensus	464		98.15
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.14
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.14
PRK09669	444	putative symporter YagG; Provisional	98.12
KOG3762|consensus	618		98.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.08
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.05
KOG0569|consensus	485		98.04
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.02
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.92
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.91
PRK11462	460	putative transporter; Provisional	97.89
KOG3098|consensus	461		97.87
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.81
PF13347	428	MFS_2: MFS/sugar transport protein	97.79
PF12832	77	MFS_1_like: MFS_1 like family	97.78
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.62
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.57
KOG0637|consensus	498		97.56
COG2211	467	MelB Na+/melibiose symporter and related transport	97.54
KOG4332|consensus	454		97.49
PTZ00207	591	hypothetical protein; Provisional	97.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.47
KOG0253|consensus	528		97.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.36
PF12832	77	MFS_1_like: MFS_1 like family	97.27
KOG3342|consensus	180		97.22
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.22
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.2
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.18
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.17
KOG2615|consensus	451		96.9
KOG0252|consensus	538		96.7
KOG2563|consensus	480		96.67
PRK03612	521	spermidine synthase; Provisional	96.64
KOG3574|consensus	510		96.53
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.48
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.43
KOG0254|consensus	513		96.19
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.16
KOG0255|consensus	521		96.06
COG3202	509	ATP/ADP translocase [Energy production and convers	96.03
KOG3810|consensus	433		95.96
KOG1330|consensus	493		95.89
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.72
KOG2816|consensus	463		95.64
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.95
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.45
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.33
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	94.09
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	92.96
KOG1237|consensus	571		92.56
KOG3626|consensus	735		92.21
KOG3097|consensus	390		91.88
KOG3762|consensus	618		91.71
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.35
KOG3098|consensus	461		91.26
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	89.66
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	88.59
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	86.32
KOG1479|consensus	406		85.76
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	84.62
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	84.34
KOG4332|consensus	454		83.22

>KOG2532|consensus

Probab=99.98  E-value=1.1e-30  Score=250.93  Aligned_cols=282  Identities=44%  Similarity=0.825  Sum_probs=252.7

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccC
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGP  102 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  102 (455)
                      ++++++|+++.+++.+.+..|+.+++++.|+++||+|      ...+..++.++....++..+.+.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            4579999999999999999999999999999999999      3444555555555555544444779999999999999


Q ss_pred             chhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCC
Q psy3467         103 IVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEA  182 (455)
Q Consensus       103 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~  182 (455)
                      .+|+...+.++|.|++||++..++...+..+|.+++..++|.+.+.  ..||+++|++.++++++..++++.+..|+|++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            9999999999999999999999999999999999999999998875  27999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhch
Q psy3467         183 HPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSA  262 (455)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~  262 (455)
                      ++..+++|++++++...+++.+++ ++.|++++++++.+|.+.+..+..++..+.+..+.|.|+++++|+|..++|++.+
T Consensus       223 h~~is~~El~~I~~~k~~~~~~~~-~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~sa  301 (466)
T KOG2532|consen  223 HPNISEKELKYIEKGKSEAHVKKK-PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSA  301 (466)
T ss_pred             CCCCCHHHHHHHHhcccccccCCC-CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHH
Confidence            999999999998877655444322 7889999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHHH
Q psy3467         263 LPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSA  314 (455)
Q Consensus       263 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (455)
                      .+.+...+..+.+|.++||+.+| .+.....|+....++..+.++++++++.
T Consensus       302 lP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~  352 (466)
T KOG2532|consen  302 LPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAF  352 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeee
Confidence            99999999999999999999998 7788888999999999888888777654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.8e-29  Score=229.09  Aligned_cols=266  Identities=13%  Similarity=0.212  Sum_probs=219.9

Q ss_pred             HHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHHhhhhH-
Q psy3467          15 RVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL-   87 (455)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~~~~~~-   87 (455)
                      ..+.-.+....|.+.+|.++|.+|.|++.+.+.+++.++.++.|.++||.+      ..++.+++..+.   .+++++. 
T Consensus        42 Yl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil---~Gfs~s~~  118 (448)
T COG2271          42 YLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL---FGFSPSLF  118 (448)
T ss_pred             HHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHH---HhhhhHHH
Confidence            344455667778899999999999999999999999999999999999999      444444444444   4445566 


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHH--HHhHhcccCCCCchhHHHhhHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLS--GLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~--~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                      .+.+.-+++|..+|.-+|.+...+..|++++|||+..++.+++.++|..+.|++.  +.+..+   .+||..|++.++++
T Consensus       119 ~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~---~~w~~~f~~pgiia  195 (448)
T COG2271         119 LFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH---GGWRAAFYFPGIIA  195 (448)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc---cchhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  888887   79999999999999


Q ss_pred             HHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCC---CCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         166 AVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVAS---SPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       166 ~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      ++..++.++..+|+|+...-.+-+|-.....+..+++++.+   ..+.-++.+++||.+|.++++..+.+..++++..|.
T Consensus       196 iival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~  275 (448)
T COG2271         196 IIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG  275 (448)
T ss_pred             HHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhH
Confidence            99999999999999987654443332211111100000000   011223456899999999999999999999999999


Q ss_pred             hHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         243 PTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       243 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      |.|+.|+.|+|..+++...+.+-++.++|.+++|+++||+.+.|
T Consensus       276 p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr  319 (448)
T COG2271         276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR  319 (448)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999987443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=1.4e-27  Score=235.42  Aligned_cols=255  Identities=43%  Similarity=0.734  Sum_probs=208.7

Q ss_pred             ccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH--hhhhH-HHHHHHHHHhhcccCch
Q psy3467          31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA--GHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        31 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~--~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      |++++.++.|++.+.+.+++.+++++.|+++||+|   .......+..+......  ...++ .+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            78999999999999999999999999999999999   22222222223332222  22345 88999999999999999


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCC-CCchhHHHhhHHHHHHHHHhhhhcccCCCCC
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAG-GWPSIFYVFGLVGAVWSVAFLLYCYEEPEAH  183 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~-~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~  183 (455)
                      +....++.|++|+++|++++++...+..+|..+++.+++.+.+.   . +||+.|++.++++++..++.+.+.+|+|+.+
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~---~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~  226 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES---WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH  226 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence            99999999999999999999999999999999999999998876   5 9999999999988887777777788888766


Q ss_pred             CCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchh
Q psy3467         184 PNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSAL  263 (455)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~  263 (455)
                      ++.+++|++..++..+++ +++++.+.+++++++++.++...+..++.++..+.+..++|.|+++.+|.+..+.++..+.
T Consensus       227 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~  305 (465)
T TIGR00894       227 PCISKFEKKYINSSLQGQ-KGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL  305 (465)
T ss_pred             CCCCHHHHHHHHhhcccc-cCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHH
Confidence            555555544433322111 1112234568999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccc
Q psy3467         264 PYLAMWIFSMFASFIADSMITSEKFS  289 (455)
Q Consensus       264 ~~~~~~~~~~~~g~l~dr~g~r~~~~  289 (455)
                      +.++..++.+++|+++||+++|+...
T Consensus       306 ~~~~~~i~~~~~g~l~d~~~~~~~~~  331 (465)
T TIGR00894       306 PYLFAWLCSIFAGYLADFLKSSKTLS  331 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999998876544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.3e-28  Score=224.15  Aligned_cols=258  Identities=17%  Similarity=0.219  Sum_probs=228.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHH
Q psy3467           5 QHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVA   81 (455)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~   81 (455)
                      .....+.|.-....-.....+|++.+|+|+|..+.|++.|+|.++..+++++...++||+.   ..+....++.+....+
T Consensus        16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~   95 (394)
T COG2814          16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS   95 (394)
T ss_pred             HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence            3444555555555556667789999999999999999999999999999999999999999   7777888889999999


Q ss_pred             HhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHH
Q psy3467          82 AGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYV  160 (455)
Q Consensus        82 ~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~  160 (455)
                      +.++|+ .++++|++.|+..|..++...++.+|..||++|++++++...+..++.++|..++.++.+.   .|||+.|+.
T Consensus        96 alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~---~GWR~~F~~  172 (394)
T COG2814          96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL---FGWRATFLA  172 (394)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---hhHHHHHHH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999   999999999


Q ss_pred             hhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHh
Q psy3467         161 FGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMT  240 (455)
Q Consensus       161 ~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (455)
                      .+.++++..+..+..+|  |++.+..+                  +.+..+..+++|+|+++...+..++.+.+.+...+
T Consensus       173 ia~l~ll~~~~~~~~lP--~~~~~~~~------------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ft  232 (394)
T COG2814         173 IAVLALLALLLLWKLLP--PSEISGSL------------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYT  232 (394)
T ss_pred             HHHHHHHHHHHHHHhCC--CccCCCCC------------------CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHH
Confidence            99999998888888888  22211110                  11122237889999999999999999999999999


Q ss_pred             hhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         241 ELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       241 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      |+.+++++..|+|.+..++++..++++..+|+..+|++.|| +.|+
T Consensus       233 Yi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~  277 (394)
T COG2814         233 YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR  277 (394)
T ss_pred             hHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh
Confidence            99999999999999999999999999999999999999999 6654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.96  E-value=1.5e-27  Score=230.93  Aligned_cols=277  Identities=15%  Similarity=0.188  Sum_probs=213.2

Q ss_pred             HHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhh
Q psy3467           9 YSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHS   85 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~   85 (455)
                      +...++......+....|.+++|+|++.++.|++.+++.+++.+++++.|+++||+|   .......+..+......+++
T Consensus        15 ~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~   94 (412)
T TIGR02332        15 ILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT   94 (412)
T ss_pred             HHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence            333444444555555666788999999999999999999999999999999999999   44444445555566666777


Q ss_pred             hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc---cCCCCchhHHHh
Q psy3467          86 IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG---FAGGWPSIFYVF  161 (455)
Q Consensus        86 ~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~---~~~~wr~~f~~~  161 (455)
                      ++ .+++.|+++|++.+...+....++.|++|+|+|++++++++.+..+|..+++.+++.+.+.+   ...|||+.|++.
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~  174 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLE  174 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHH
Confidence            88 99999999999999999999999999999999999999999999999999999999886421   115999999999


Q ss_pred             hHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhccccc-----CCC--CCC----CCChhhhhcChhHHHHHHHHHH
Q psy3467         162 GLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLA-----GVA--SSP----PVPWKDIVSSLPFWAILIAHMG  230 (455)
Q Consensus       162 ~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~  230 (455)
                      ++++++..++.++++||+|++++..++++++...+..+.++     .++  ++.    ...+++++ +|.++...+..++
T Consensus       175 ~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  253 (412)
T TIGR02332       175 GFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFC  253 (412)
T ss_pred             HHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHH
Confidence            88888777777788899987654333333332221111000     000  011    11233333 5778888888888


Q ss_pred             HHHHHHHHHhhhhHHHHHH-hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         231 QNYGYETLMTELPTFMKQV-LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      .....+.+..+.|.++++. .+.+..+.+.......++..++.+..|+++||+++|+
T Consensus       254 ~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~  310 (412)
T TIGR02332       254 LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence            8888888999999999872 3677888899999999999999999999999998764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.96  E-value=5.5e-27  Score=232.26  Aligned_cols=278  Identities=15%  Similarity=0.063  Sum_probs=223.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH
Q psy3467           6 HTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA   82 (455)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~   82 (455)
                      ......++.....+.+...+|++.+|+|.+.++.+|+.+.|.++...++++.|+++||+|   ..+....+..+.+..+.
T Consensus        10 ~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~   89 (495)
T PRK14995         10 IIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA   89 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777778888999999999999999999999999999999999999999   55556666677777788


Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhccc-CCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHH
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWI-PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYV  160 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~  160 (455)
                      .+++. .++++|+++|+|.+...+.....+.+.+ |+|+|++++++......+|..+||.+++.+.++   .||||.|++
T Consensus        90 ~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---~gwr~~f~i  166 (495)
T PRK14995         90 FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---FYWGSVFLI  166 (495)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CChHHHHHH
Confidence            88888 9999999999999988888888887776 678999999999999999999999999999998   899999999


Q ss_pred             hhHHHHHHHHHhhhhcccCCCCCCCCCh-hHHHH-----------Hhhhcc-----------------------cccCCC
Q psy3467         161 FGLVGAVWSVAFLLYCYEEPEAHPNIAE-DERKY-----------IMSSVW-----------------------GLAGVA  205 (455)
Q Consensus       161 ~~~~~~~~~i~~~~~~~e~~~~~~~~~~-~~~~~-----------~~~~~~-----------------------~~~~~~  205 (455)
                      ...+.++..++..+++||+++++++..+ .+...           ..+...                       ..+.+.
T Consensus       167 ~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~  246 (495)
T PRK14995        167 NVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAA  246 (495)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9888888777777788886543322111 11000           000000                       001122


Q ss_pred             CCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         206 SSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      +++..+ .+++|+|.+....+..++..........+.|.|+++.+|+|+.++|+......++..++.++.|++.||+++|
T Consensus       247 ~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~  325 (495)
T PRK14995        247 SRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR  325 (495)
T ss_pred             CCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            333344 5788998888887877777777778888999999999999999999999999999999999999999999987


Q ss_pred             cc
Q psy3467         286 EK  287 (455)
Q Consensus       286 ~~  287 (455)
                      +.
T Consensus       326 ~~  327 (495)
T PRK14995        326 LV  327 (495)
T ss_pred             HH
Confidence            53

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=1.8e-27  Score=234.35  Aligned_cols=275  Identities=14%  Similarity=0.167  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HH---HHHHHHHHHHH--HHHH
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IG---MLINSVFAFLV--PVAA   82 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~---l~~~~~~~~~~--~~~~   82 (455)
                      ..........++...|.+.+|+|+++++.|++.+.+.+++.+++++.|.++||+|   +.   ++.+++.....  ..+.
T Consensus        38 ~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~  117 (467)
T PRK09556         38 YLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS  117 (467)
T ss_pred             HHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc
Confidence            3333444455566678889999999999999999999999999999999999999   22   22222222222  2233


Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF  161 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~  161 (455)
                      .++++ .+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+...+.+.....+||..|.+.
T Consensus       118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~  197 (467)
T PRK09556        118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP  197 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence            35677 99999999999999999999999999999999999999999999999999999987766541112699999998


Q ss_pred             hHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCC----h-hhhhcChhHHHHHHHHHHHHHHHH
Q psy3467         162 GLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVP----W-KDIVSSLPFWAILIAHMGQNYGYE  236 (455)
Q Consensus       162 ~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~  236 (455)
                      +++.++..++.+++.+|+|++++..++++.  ..+....+++..++++.+    + ++.+|+|.++...+..++.+....
T Consensus       198 g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  275 (467)
T PRK09556        198 SIIALIIGFIGLRYGSDSPEELGWGKAEEI--FGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRI  275 (467)
T ss_pred             HHHHHHHHHHHHHhCCCChhhcCCCChhhc--ccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            888887777777777887765433322221  000000000000011111    1 237899999999999888888888


Q ss_pred             HHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         237 TLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       237 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ....+.|.|+++++|+|+.+++...+...++..++.++.|+++||+++|+.
T Consensus       276 ~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        276 GIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            888999999998899999999999988999999999999999999998854

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=5.7e-27  Score=222.30  Aligned_cols=249  Identities=14%  Similarity=0.056  Sum_probs=193.9

Q ss_pred             HHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHHHHH-HhhhhH-H
Q psy3467          13 VSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLVPVA-AGHSIL-A   88 (455)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~~~~-~~~~~~-~   88 (455)
                      .+++.-..+.+.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|  ..+............+ ...+++ .
T Consensus         2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34555566788899999999999999999999999999999999999999999  2222222222222111 222567 9


Q ss_pred             HHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHH
Q psy3467          89 LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVW  168 (455)
Q Consensus        89 ~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~  168 (455)
                      +++.|+++|++.+. .+.....++|++|+|+|++++++.+.+..+|..+++.+++.+.++   .|||+.|++.++++++.
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~~~~~l~~~~  157 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHH
Confidence            99999999999985 566667779999999999999999999999999999999999988   89999999999988887


Q ss_pred             HHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy3467         169 SVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQ  248 (455)
Q Consensus       169 ~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (455)
                      .++.++++||+|+++++..+.+ +               ...++++++|+|.++.+.+..++.....+.+..|+|.|+++
T Consensus       158 ~~~~~~~lp~~p~~~~~~~~~~-~---------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~  221 (368)
T TIGR00903       158 IILVLAALPALPFQAAEGFGFK-D---------------AVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP  221 (368)
T ss_pred             HHHHHHHcCCCCCCCCCCcchH-H---------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999876543211100 0               01135789999999999999999999999999999999987


Q ss_pred             HhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         249 VLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       249 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                       .|++.. .+.......+   .+.+..+++.||..||+
T Consensus       222 -~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~~r~~  254 (368)
T TIGR00903       222 -AGLEDI-AGDAVALAIL---AGLIGVAVIPDRVARAG  254 (368)
T ss_pred             -CCCChH-HHHHHHHHHH---HHHHHHHHhhHHhhhhh
Confidence             678764 4544444444   34444688999987653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.95  E-value=4.5e-26  Score=219.53  Aligned_cols=241  Identities=16%  Similarity=0.144  Sum_probs=199.5

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHH
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQ   96 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~   96 (455)
                      ..+.+|.+.+|+|.|+++.+++.+.+.+++.+++++.|.++||+|   .......+..+....+..++++ .+++.|+++
T Consensus        28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~  107 (390)
T PRK03545         28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGI  107 (390)
T ss_pred             HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            445578889999999999999999999999999999999999999   4444555555566667777888 999999999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhc
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYC  176 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~  176 (455)
                      |++.+...+...+++.|++|+|+|++++++.+.+.++|..++|.+++.+.+.   .|||+.|++.++++++..+..+...
T Consensus       108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~  184 (390)
T PRK03545        108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLL  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999988899999999999999999999999999999999999999999888   8999999999988877666666666


Q ss_pred             ccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccc
Q psy3467         177 YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKE  256 (455)
Q Consensus       177 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  256 (455)
                      ||.|++++.                      +..+.++.+|+|.++......++..........+.+.++++++|.|+.+
T Consensus       185 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~  242 (390)
T PRK03545        185 PLLPSEHSG----------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENF  242 (390)
T ss_pred             CCCCCCCcc----------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH
Confidence            664432110                      0112367888888876666656655566666678888888878999999


Q ss_pred             chhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         257 NGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      .+.......++..+++++.+++.||+++|+
T Consensus       243 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        243 ATLLLLLFGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            999999999999999999999999998763

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=5.4e-26  Score=219.38  Aligned_cols=263  Identities=22%  Similarity=0.428  Sum_probs=213.1

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHH
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQ   96 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~   96 (455)
                      +....|.+.+++|.++++.+++.+++.++..+++++.|.++||+|   .......+..+........+++ .+++.|+++
T Consensus        13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   92 (399)
T TIGR00893        13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLL   92 (399)
T ss_pred             hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            334445578899999999999999999999999999999999999   3333344444444455556677 999999999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhc
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYC  176 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~  176 (455)
                      |++.+...+....++.|++|+|+|++++++.+....+|..+++.+++.+.+.   .+||+.|++.+++.++..++.++..
T Consensus        93 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893        93 GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHhhhee
Confidence            9999999999999999999999999999999999999999999999998887   8999999999888887677777777


Q ss_pred             ccCCCCCCCCChhHHHHHhhhccc---ccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCc
Q psy3467         177 YEEPEAHPNIAEDERKYIMSSVWG---LAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFN  253 (455)
Q Consensus       177 ~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  253 (455)
                      ||+|++++..++++++...++...   +++++++...+.++.+|+|+++...+..++..........+.|.++++.+|.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (399)
T TIGR00893       170 PDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS  249 (399)
T ss_pred             cCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence            887665444333333222111111   11112233445678899999999999888888888889999999999889999


Q ss_pred             cccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         254 IKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      +.+.+.......++..++.++.+++.||+++|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       250 ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999985

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.95  E-value=3.9e-26  Score=222.75  Aligned_cols=271  Identities=13%  Similarity=0.121  Sum_probs=205.9

Q ss_pred             HHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-
Q psy3467          12 FVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-   87 (455)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-   87 (455)
                      +........+...+|++.+++|+|.++.+++.+.+.+++.+++++.|+++||+|   .......+..+.......++++ 
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
T PRK11663         33 ALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLW  112 (434)
T ss_pred             HHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence            333333445566778888999999999999999999999999999999999999   4444444444555556666777 


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+++.|++.|++.|...+...+++.|++|+|+|++++++.+.+.++|..++|.+++.+.+.   .|||+.|++.+++.++
T Consensus       113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~  189 (434)
T PRK11663        113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---YGWRYGMMIAGIIAIV  189 (434)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999887   8999999998887776


Q ss_pred             HHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCC-h-hhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy3467         168 WSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVP-W-KDIVSSLPFWAILIAHMGQNYGYETLMTELPTF  245 (455)
Q Consensus       168 ~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (455)
                      ..+...+++||+|++.+..+.++.+...++..++.++++.+..+ + ...+|++.++...+..++.+.....+..+.|.|
T Consensus       190 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  269 (434)
T PRK11663        190 VGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLY  269 (434)
T ss_pred             HHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666667788765432111100000000000000000001111 1 125678888888887777777777888899999


Q ss_pred             HHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         246 MKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       246 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      +++++|++..+.+...+.+.++..++.++.|++.||+.+|
T Consensus       270 l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~  309 (434)
T PRK11663        270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG  309 (434)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence            9877899999999999999999999999999999999543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.95  E-value=7.8e-26  Score=224.56  Aligned_cols=276  Identities=18%  Similarity=0.197  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      ....++...........+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|   ..+....+..+....+..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   87 (485)
T TIGR00711         8 MLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA   87 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc
Confidence            4445555566666777788899999999999999999999999999999999999999   4555555666666677777


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      +++ .+++.|+++|++.+...+...+++.|++|+|+|+++.++......+|..++|.+++.+.++   .+||+.|++.++
T Consensus        88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~w~~~f~~~~~  164 (485)
T TIGR00711        88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN---YHWRWIFLINVP  164 (485)
T ss_pred             CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC---cCceehhhhhhH
Confidence            888 9999999999999999999999999999999999999999999999999999999999988   899999999988


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHHH------------HHhhhccc------------------------ccCCCCC
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDERK------------YIMSSVWG------------------------LAGVASS  207 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~~------------~~~~~~~~------------------------~~~~~~~  207 (455)
                      ++++..++..+..||+++++++..+....            ...+....                        .+.++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (485)
T TIGR00711       165 IGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDN  244 (485)
T ss_pred             HHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88776777777777754432221111000            00000000                        0011122


Q ss_pred             CCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         208 PPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +..+ .+++|+|.++...+..++.....+....+.|.|+++.+|+++.+.++......++..++.++.|++.||+++|+.
T Consensus       245 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  323 (485)
T TIGR00711       245 PLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL  323 (485)
T ss_pred             CccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence            2233 467888888888888888888888888999999999899999999999999999999999999999999998754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.94  E-value=2.8e-25  Score=213.87  Aligned_cols=257  Identities=17%  Similarity=0.201  Sum_probs=211.0

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL   87 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~   87 (455)
                      ..+.........+.+|.+.+|+|.|+++.+++.+++.++..+++++.|+++||+|   ..+....+..+........+++
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   93 (385)
T TIGR00710        14 SILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI   93 (385)
T ss_pred             HHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence            3445556667778889999999999999999999999999999999999999999   3444444445555555566777


Q ss_pred             -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHH
Q psy3467          88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGA  166 (455)
Q Consensus        88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~  166 (455)
                       .+++.|++.|++.+...+...+++.|++|+|+|+++.++.+....+|..++|.+++.+.+.   .+||+.|++.+++.+
T Consensus        94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~  170 (385)
T TIGR00710        94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGI  170 (385)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999887   899999999888877


Q ss_pred             HHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3467         167 VWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFM  246 (455)
Q Consensus       167 ~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (455)
                      +..+..++..||+++++++.++++                 ...++++.+|+|+++...+..............+.|.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (385)
T TIGR00710       171 LLSALIFFILPETLPYEARIQIST-----------------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVY  233 (385)
T ss_pred             HHHHHHHHhCCCCCCCcccCCHHH-----------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHH
Confidence            766666667777654332211110                 112346778888888877777777777777788889999


Q ss_pred             HHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         247 KQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       247 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ++++|.++.+.+.+.....++..+++++.+++.||+++|+.
T Consensus       234 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  274 (385)
T TIGR00710       234 IDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL  274 (385)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            88899999999999999999999999999999999998854

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.94  E-value=2e-25  Score=214.32  Aligned_cols=255  Identities=15%  Similarity=0.189  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      .+..+........+.+.+|.+++|+|.+.++.+++.+.+.+++.+++++.|+++||+|   .......+..+....+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~   88 (382)
T PRK10091          9 ALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS   88 (382)
T ss_pred             HHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence            4445555566666778888899999999999999999999999999999999999999   4444445555556667777


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      +++ .+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+.   .+||+.|++.++
T Consensus        89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~  165 (382)
T PRK10091         89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAV  165 (382)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHH
Confidence            788 9999999999999988888899999999999999999999999999999999999999887   899999999988


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhh
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELP  243 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
                      +.++..+..++..||.+++++.   +.+                  .. .+.+|+++.+......++.+........+.+
T Consensus       166 ~~~~~~~~~~~~lp~~~~~~~~---~~~------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (382)
T PRK10091        166 FNIAVLASIYFWVPDIRDEAKG---GLR------------------EQ-FHFLRSPAPWLIFAATMFGNAGVFAWFSYIK  223 (382)
T ss_pred             HHHHHHHHHHHhCCCCCccccc---CHH------------------HH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777666666667775432110   000                  01 3456676666665555554445555566777


Q ss_pred             HHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         244 TFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       244 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .++++.+|+++.+.++..+...++..+++++.+++.||+++|+.
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~  267 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI  267 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH
Confidence            78887789999999999999999999999999999999998764

>KOG2533|consensus

Probab=99.94  E-value=1.9e-25  Score=215.27  Aligned_cols=261  Identities=17%  Similarity=0.283  Sum_probs=217.7

Q ss_pred             hhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHHH-HHHhhhhH-HHHHHHHHHhh
Q psy3467          23 RRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLVP-VAAGHSIL-ALSIIRFIQGL   98 (455)
Q Consensus        23 ~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~~-~~~~~~~~-~~~~~r~l~G~   98 (455)
                      +.+..+.+|.+....+.+.+.++++++++++.++++.+.||++  ..+....+...... +.....++ .+++.|++.|+
T Consensus        67 a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl  146 (495)
T KOG2533|consen   67 ASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGL  146 (495)
T ss_pred             HHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4445578899999999999999999999999999999999999  33333333322222 33335667 99999999999


Q ss_pred             cccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc---ccCCCCchhHHHhhHHHHHHHHHhhhh
Q psy3467          99 GEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY---GFAGGWPSIFYVFGLVGAVWSVAFLLY  175 (455)
Q Consensus        99 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~---~~~~~wr~~f~~~~~~~~~~~i~~~~~  175 (455)
                      .++..+|....+++.|+.++||++.++++.+..++|.++|.+++..+.+.   ....||||.|++.++++++..++.+++
T Consensus       147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~  226 (495)
T KOG2533|consen  147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFF  226 (495)
T ss_pred             HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence            99999999999999999999999999999999999999999999986431   112699999999999999999999999


Q ss_pred             cccCCCCCCCCChhHHHHHhhhcccccCC---CCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcC
Q psy3467         176 CYEEPEAHPNIAEDERKYIMSSVWGLAGV---ASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHF  252 (455)
Q Consensus       176 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  252 (455)
                      +|+.|++.+-.+++|+....++.+++..+   ++.+...+++.+++|.+|...+..++.....+++.+++|.++++..|+
T Consensus       227 lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~  306 (495)
T KOG2533|consen  227 LPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGY  306 (495)
T ss_pred             ecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCc
Confidence            99999988777777765443333322211   113455667889999999999999999999999999999999996679


Q ss_pred             ccccchhhchhHHHHHHHHHHHHHHHHHHhh
Q psy3467         253 NIKENGTLSALPYLAMWIFSMFASFIADSMI  283 (455)
Q Consensus       253 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g  283 (455)
                      +..+++.+.....++++++.+++|.++||+.
T Consensus       307 s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  307 SELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             ChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999964

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.94  E-value=2.9e-25  Score=212.28  Aligned_cols=274  Identities=12%  Similarity=0.115  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH
Q psy3467           7 TAYSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA   82 (455)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~   82 (455)
                      ..+..++.........+..|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|   ..+....+..+......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~   85 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG   85 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            445555555566667777885 88999999999999999999999999999999999999   44444445555555556


Q ss_pred             hhh-hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc-------cCCC
Q psy3467          83 GHS-IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG-------FAGG  153 (455)
Q Consensus        83 ~~~-~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~-------~~~~  153 (455)
                      ..+ ++ .+++.|+++|++.+ ..+....++.|++|+|+|+++.++.....++|..+++.+++.+.+..       ...+
T Consensus        86 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~  164 (366)
T TIGR00886        86 LAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA  164 (366)
T ss_pred             HHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            666 77 88999999999865 45678899999999999999999999888888888888877665420       0148


Q ss_pred             CchhH-HHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHH
Q psy3467         154 WPSIF-YVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQN  232 (455)
Q Consensus       154 wr~~f-~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (455)
                      ||+.| +..+++..+..++.+.+.+|+|+++++.+  +.+. ++..   ...+++...+.++.+++|+++...+..++..
T Consensus       165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (366)
T TIGR00886       165 WGWAFVIVPAGILLLPALLIFFVGADTPPGKPATG--KLSF-KGAR---WSVGTGALGDQLKVFRDRHTWILALLYSVTF  238 (366)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcccCCcccccch--hccc-cccc---ccccchhHHHHHHHHhccchhhHHHHHHHHH
Confidence            99999 44466655555566666677664322111  0000 0000   0000111124567888888888888777777


Q ss_pred             HHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         233 YGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ........+.|.|+++.+|.++.+.+.+.....+...++.++.|++.||+++|+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  293 (366)
T TIGR00886       239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK  293 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh
Confidence            7777888999999999899999999988888899999999999999999999854

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2e-25  Score=203.32  Aligned_cols=260  Identities=14%  Similarity=0.193  Sum_probs=218.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HH---HHHHHHHHHHH
Q psy3467           5 QHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IG---MLINSVFAFLV   78 (455)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~---l~~~~~~~~~~   78 (455)
                      ..+.....++.++-..+++..+.+++|+|+|++|.+++.++..+...+..++.|.+.||+|   ..   ++...+-++..
T Consensus        17 ~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~   96 (417)
T COG2223          17 WLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGL   96 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHH
Confidence            3445556667777777888888888999999999999999999999999999999999999   33   33333334444


Q ss_pred             HHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC---C
Q psy3467          79 PVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG---W  154 (455)
Q Consensus        79 ~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~---w  154 (455)
                      ......+++ ++++.+.+.|++.+ .+......+++++|||++|.++|+.. ..|+|..+...++..+...   .+   |
T Consensus        97 ~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~---~g~~~w  171 (417)
T COG2223          97 AFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA---FGFLAW  171 (417)
T ss_pred             HHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH---HhhHHH
Confidence            444444455 99999999999854 78899999999999999999999999 8999999999999999887   77   9


Q ss_pred             chhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHH
Q psy3467         155 PSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYG  234 (455)
Q Consensus       155 r~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (455)
                      |..-.+..+..++..+..++...|.|+.+...++.+                  ....+.++++++.|.+.+.++..+..
T Consensus       172 ~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~------------------~~~~~~v~~~~~~W~lsllY~~tFG~  233 (417)
T COG2223         172 RNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL------------------PAQLKAVFSNKDTWLLSLLYFATFGG  233 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc------------------hhHHHHHhcCcchHHHHHHHHHHHHH
Confidence            999999988888888888888888877532211111                  03357788999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         235 YETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       235 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.++..++|.|++++||.++.++|.....+.....+.++.+|+++||+|.+|+
T Consensus       234 Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv  286 (417)
T COG2223         234 FVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV  286 (417)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence            99999999999999999999999999999999999999999999999999876

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.94  E-value=4.8e-25  Score=212.26  Aligned_cols=243  Identities=13%  Similarity=0.050  Sum_probs=198.4

Q ss_pred             HHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHH
Q psy3467          19 TKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRF   94 (455)
Q Consensus        19 ~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~   94 (455)
                      ..+.+.+|++++|+|+|+++.+++.+.+.+++.+++++.|+++||+|   +......+..+....+++++++ .+++.|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999   6777777777888888888888 9999999


Q ss_pred             HHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhh
Q psy3467          95 IQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL  174 (455)
Q Consensus        95 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~  174 (455)
                      ++|++.+...+....++.|++| |+|+++++.++.+...|..+++.+++.+.++.  .+||+.+.+.++..++.....+.
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~  182 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWW  182 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999996 88999999999999999999999999888761  38999887766655443222222


Q ss_pred             hcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcc
Q psy3467         175 YCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNI  254 (455)
Q Consensus       175 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  254 (455)
                      ..++.|++++                     +++ .+.++.+|+++.+.+.+..++....+.....+.|.++++ +|.+.
T Consensus       183 ~~~~~~~~~~---------------------~~~-~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~  239 (393)
T PRK09705        183 QSAREVASSH---------------------KTT-TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASA  239 (393)
T ss_pred             HhcCCCcccc---------------------CCC-cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCh
Confidence            2222221100                     000 111445677788777777777777888888999999987 79999


Q ss_pred             ccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         255 KENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       255 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+.+...+.+.++..++++..+++.||.++|+.
T Consensus       240 ~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~  272 (393)
T PRK09705        240 QYSGSLLALMTLGQAAGALLMPAMARHQDRRKL  272 (393)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence            999999999999999999999999999998754

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.94  E-value=1.4e-25  Score=213.09  Aligned_cols=265  Identities=24%  Similarity=0.396  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHhhhhhc-ccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           9 YSIFVSRVINTKLTRRVH-HKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~-~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      +..++.......+.+.+| .+.+++|.|+++.+++.+++.++..+++++.|+++||+|   .......+..+......++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence            344555555666667777 788999999999999999999999999999999999999   3333333333332333333


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      ++. .+++.|+++|++.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+.+.   .+||+.|++.++
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~~~~~~~~~~~  159 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FGWRWAFLISAI  159 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CHHCCHHHHHHH
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cccccccccccc
Confidence            555 9999999999999999999999999999999999999999999999999999999999877   899999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCC-ChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPV-PWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      +.++..++..++.++++++++..++++++..          .+++.. .+++++++|.++......++..........+.
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESESK----------KPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFL  229 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccccc----------cccccccccccccccchhhhhhhhhhHHHHHHHHhhccc
Confidence            9888766555666665544433222221000          011122 35777777777655555566666777788999


Q ss_pred             hHHHHHHhcCc-cccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         243 PTFMKQVLHFN-IKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       243 ~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      |.|+++.+|++ ..+.+.......+...++.++.+++.||+++|+
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  274 (352)
T PF07690_consen  230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR  274 (352)
T ss_dssp             HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            99977779999 789999999999999999999999999998764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.94  E-value=8.1e-25  Score=211.74  Aligned_cols=254  Identities=12%  Similarity=0.090  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhh
Q psy3467          10 SIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSI   86 (455)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~   86 (455)
                      ..++.........|.+|++.+++|.+.++.++..+++.+++.+++++.|+++||+|   ..+....+..+....+..+++
T Consensus        24 ~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~  103 (413)
T PRK15403         24 YDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS  103 (413)
T ss_pred             HHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC
Confidence            34445555677788889999999999999999999999999999999999999999   444455555666666777788


Q ss_pred             H-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH
Q psy3467          87 L-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus        87 ~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                      + .++++|+++|++.+...+....++.|++|+++|++++++......+|..+||.+++.+.++   .|||+.|++.+++.
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~  180 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMG  180 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Confidence            8 9999999999998877777888999999999999999999999999999999999999887   89999999998888


Q ss_pred             HHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy3467         166 AVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTF  245 (455)
Q Consensus       166 ~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (455)
                      ++..+..++.+||+++++++.. +.+               +..+++++++|||.++...+..++............|.+
T Consensus       181 ~i~~~~~~~~lp~~~~~~~~~~-~~~---------------~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~  244 (413)
T PRK15403        181 LIAFVGLLLAMPETVKRGAVPF-SAK---------------SVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVI  244 (413)
T ss_pred             HHHHHHHHHhCCCCccccCCCC-ChH---------------HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            8766665667788654221110 000               012245788999999988888888777777788889999


Q ss_pred             HHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHh
Q psy3467         246 MKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSM  282 (455)
Q Consensus       246 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  282 (455)
                      +++.+|+++.+.++.......+..++..+.+.+.+|.
T Consensus       245 l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~  281 (413)
T PRK15403        245 LIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP  281 (413)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9998899999999987777777777766666655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.94  E-value=1.7e-24  Score=208.24  Aligned_cols=238  Identities=13%  Similarity=0.141  Sum_probs=190.2

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHH
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQ   96 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~   96 (455)
                      ..+.+|++.+|+|.++++.++..+.+.++..+++++.|+++||+|   ..+....+..+....+..++++ .+++.|+++
T Consensus        39 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  118 (394)
T PRK10213         39 PVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACL  118 (394)
T ss_pred             HHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence            345577788999999999999999999999999999999999999   4444444555555556666777 999999999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhc
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYC  176 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~  176 (455)
                      |++.+...+...+++.|++|+|+|+++.++...+.++|..++|.+++.+.+.   .|||+.|++.++++++..+......
T Consensus       119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~  195 (394)
T PRK10213        119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSL  195 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999988   8999999998877766444444445


Q ss_pred             ccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccc
Q psy3467         177 YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKE  256 (455)
Q Consensus       177 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  256 (455)
                      ||+|++++                      +...+.++.+|+|.++...+..++..........+.+.++.+++|+++.+
T Consensus       196 p~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~  253 (394)
T PRK10213        196 PSLPGEPS----------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDG  253 (394)
T ss_pred             CCCCcccc----------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH
Confidence            66432111                      01112357788888887766666666666666666644444458999999


Q ss_pred             chhhchhHHHHHHHHHHHHHHHHHHhh
Q psy3467         257 NGTLSALPYLAMWIFSMFASFIADSMI  283 (455)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~g~l~dr~g  283 (455)
                      .+......+++..++.++.+++.||.+
T Consensus       254 ~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        254 LTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999988899999999999999999854

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=1.1e-24  Score=215.78  Aligned_cols=237  Identities=19%  Similarity=0.281  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-H--------HHHHHHHHhhcccCchhhHHHH
Q psy3467          43 LSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-A--------LSIIRFIQGLGEGPIVPCTHAL  110 (455)
Q Consensus        43 ~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~--------~~~~r~l~G~~~~~~~~~~~~~  110 (455)
                      .++..++..+++++.|+++||+|   ..+....+..+....+++++++ .        +++.|+++|++.|...+...++
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            57888999999999999999999   5555555666666777777776 4        8999999999999999999999


Q ss_pred             HhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc-----ccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCC
Q psy3467         111 LAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY-----GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPN  185 (455)
Q Consensus       111 i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~-----~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~  185 (455)
                      ++|++|+|+|+++.++.+.+..+|..+++.+...+...     ....|||+.|++.+++.++ .+.....+||+|+..+.
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~  221 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQH  221 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHH
Confidence            99999999999999999998888988888776554320     0117999999997765554 44445677887664211


Q ss_pred             CChhHHHHHhhhcccccCCCCCCCCChhhhhcC-hh-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchh
Q psy3467         186 IAEDERKYIMSSVWGLAGVASSPPVPWKDIVSS-LP-FWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSAL  263 (455)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~  263 (455)
                      .++.++     ...  +...++++.++++++++ ++ +.......++....++....+.|.++++.+|++..+.++....
T Consensus       222 ~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~  294 (490)
T PRK10642        222 VDKLEQ-----GDR--EGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIA  294 (490)
T ss_pred             HHhhhh-----hcc--ccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            110000     000  00011233456667653 22 2222233344556777788899999988789988888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         264 PYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       264 ~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ..++..++.+..|+++||+|||+.
T Consensus       295 ~~~~~~~~~~~~g~l~dr~grr~~  318 (490)
T PRK10642        295 IMIGMLFVQPVMGLLSDRFGRRPF  318 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHH
Confidence            888899999999999999999854

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.94  E-value=3.5e-25  Score=212.51  Aligned_cols=265  Identities=14%  Similarity=0.149  Sum_probs=206.2

Q ss_pred             HHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHH
Q psy3467          19 TKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRF   94 (455)
Q Consensus        19 ~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~   94 (455)
                      ..+....|.+.+++|.|+++.+++.+++.++..+++++.|+++||+|   ..+....+..+........+++ .+++.|+
T Consensus        12 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (379)
T TIGR00881        12 KNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWA   91 (379)
T ss_pred             HhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33444556677889999999999999999999999999999999999   4444444455555555666677 9999999


Q ss_pred             HHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHH-HHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          95 IQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSL-PLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        95 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~-~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      +.|++.+...+...+++.|++|+|+|+++.++.+.+..+|..++| .++..+.+.   .+||+.|++.+++.++..++.+
T Consensus        92 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881        92 LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YSWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             HHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999 577777776   8999999998888877677777


Q ss_pred             hhcccCCCCCCCCChhHHHHHh-hh-cccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Q psy3467         174 LYCYEEPEAHPNIAEDERKYIM-SS-VWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLH  251 (455)
Q Consensus       174 ~~~~e~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  251 (455)
                      ++.||+|++++..++++.+..+ ++ ..+.+++.++.+...++++|+|.++.+.+..++.+........+.|.++++.+|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  248 (379)
T TIGR00881       169 LLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKG  248 (379)
T ss_pred             eeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7788876543222111110000 00 000000111122234667889999988888888888888888999999998889


Q ss_pred             CccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         252 FNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       252 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      +++.+.+...+...++..++.++.+++.||..+|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  283 (379)
T TIGR00881       249 FSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR  283 (379)
T ss_pred             CCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999975543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.94  E-value=1e-24  Score=209.16  Aligned_cols=250  Identities=15%  Similarity=0.131  Sum_probs=197.1

Q ss_pred             HHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHH
Q psy3467          18 NTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIR   93 (455)
Q Consensus        18 ~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r   93 (455)
                      ....++..|.+.+|+|+|+++.+++.+++.++..+++++.|+++||+|   .......+..+.......++++ .+++.|
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY   98 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334667778889999999999999999999999999999999999999   4444555555666667777888 999999


Q ss_pred             HHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      +++|++.+...+.....+.|++| |+|+++.++...+.++|..+++.+.+.+.+.   .+||+.|++.+++.++..+..+
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890        99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL---EGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888889999986 7899999999999999998877676666666   7999999999988888677766


Q ss_pred             hhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCc
Q psy3467         174 LYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFN  253 (455)
Q Consensus       174 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  253 (455)
                      ++.+|+|+++++.+++               .+++..+.++.+|+|.++...+..++..........+.+.+.++ +|.+
T Consensus       175 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (377)
T TIGR00890       175 FLIGYPPGQLIKTNIE---------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLS  238 (377)
T ss_pred             HheecCchhccccCcc---------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCC
Confidence            6766644322110000               01112234678888888877776666666555566667777666 7888


Q ss_pred             cccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         254 IKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ..+.+...+...++..+++++.|++.||++||+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  272 (377)
T TIGR00890       239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT  272 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8888999899999999999999999999998864

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=9.2e-25  Score=211.78  Aligned_cols=260  Identities=16%  Similarity=0.193  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      ....+++...........|.+.+|+|.++++.+++.+.+.++..+++++.|+++||+|   .......+..+........
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  100 (406)
T PRK11551         21 FLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh
Confidence            3455566666666777788889999999999999999999999999999999999999   3333444444444455566


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      +++ .+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.++..+.+.   .+||+.|++.++
T Consensus       101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~  177 (406)
T PRK11551        101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD---AAWRHIFYVGGV  177 (406)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHH
Confidence            777 9999999999999999999999999999999999999999999999999999999888777   899999999887


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhc---ChhHHHHHHHHHHHHHHHHHHHh
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVS---SLPFWAILIAHMGQNYGYETLMT  240 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  240 (455)
                      +.++..+....++||+|+++++.++++.                ++...+..++   ++..+.+....+......+....
T Consensus       178 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (406)
T PRK11551        178 GPLLLVPLLMRWLPESRAFAQAAGAGKQ----------------RAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLN  241 (406)
T ss_pred             HHHHHHHHHHHhCCCChhHHhccCcchh----------------hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666666778887653221110000                0001111121   12233333444444555666777


Q ss_pred             hhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         241 ELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       241 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.|.++++ .|+++.+.+.......++..+++++.|++.||+++|+.
T Consensus       242 ~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  287 (406)
T PRK11551        242 WLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV  287 (406)
T ss_pred             HHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            88999988 79999999999999999999999999999999998754

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.94  E-value=2.3e-24  Score=208.83  Aligned_cols=258  Identities=13%  Similarity=0.094  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL   87 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~   87 (455)
                      .++....+..+.+.++.+.+|+|.|+.+.++..+.+.+++.+++++.|+++||+|   ..+....+..+.......++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~  101 (406)
T PRK15402         22 EFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSI  101 (406)
T ss_pred             HHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccH
Confidence            3344445666777888889999999999999999999999999999999999999   3334444444455555566677


Q ss_pred             -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHH
Q psy3467          88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGA  166 (455)
Q Consensus        88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~  166 (455)
                       .+++.|+++|++.+...+...+.+.|++|+++|.+..++......+|..++|.+++.+.+.   .+||+.|++.+++.+
T Consensus       102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~  178 (406)
T PRK15402        102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAA  178 (406)
T ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHH
Confidence             8899999999999988899999999999999999999999988899999999999999887   899999999888887


Q ss_pred             HHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3467         167 VWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFM  246 (455)
Q Consensus       167 ~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (455)
                      +..+..++..||+++++++..+ .               ++...++++++++|+++...+..++..........+.|.++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  242 (406)
T PRK15402        179 LSFFGLWRAMPETAGRVGEKLS-L---------------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVIL  242 (406)
T ss_pred             HHHHHHHHhCCCCCcccccccc-H---------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            7666666667776433211100 0               01122346788999888877777666666666667788888


Q ss_pred             HHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         247 KQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       247 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ++.+|+++.+.+.......++..++.++.+++.||+++|+.
T Consensus       243 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~  283 (406)
T PRK15402        243 ISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL  283 (406)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            88889999998888777788889999999999999998754

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.94  E-value=1.4e-24  Score=208.34  Aligned_cols=252  Identities=16%  Similarity=0.219  Sum_probs=205.0

Q ss_pred             HHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHH
Q psy3467          18 NTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIR   93 (455)
Q Consensus        18 ~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r   93 (455)
                      .....|.+|++.+++|+|+++.+++.+++.++..+++++.|+++||+|   .......+..+........+++ .+++.|
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   86 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR   86 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            445667888888999999999999999999999999999999999999   4444444444555555566677 899999


Q ss_pred             HHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      +++|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+.   .+||+.|++.+++.++..++..
T Consensus        87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887   8999999998888877666666


Q ss_pred             hhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCc
Q psy3467         174 LYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFN  253 (455)
Q Consensus       174 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  253 (455)
                      ++.||+++++++.+.+.               ++...++++.+++|+++...+..++..........+.|.++.+.+|++
T Consensus       164 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  228 (377)
T PRK11102        164 FFIPETLPKERRQPFHL---------------RTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVS  228 (377)
T ss_pred             HhCCccCcccccCCCCh---------------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCC
Confidence            77777643322111100               011123467788888877777666666667777778888888878999


Q ss_pred             cccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         254 IKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.+.+.......++..++.++.+++.||+++|+.
T Consensus       229 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  262 (377)
T PRK11102        229 PQNFGYYFALNIVFLFVMTIINSRFVRRVGALNM  262 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            9999999999999999999999999999999864

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.93  E-value=3.8e-24  Score=206.39  Aligned_cols=261  Identities=15%  Similarity=0.138  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH
Q psy3467           6 HTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA   82 (455)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~   82 (455)
                      ......+.+........+.+|.+.+|+|.|+++.++..+.+.++..+++++.|+++||+|   ..+.......+......
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            334445555555566667888999999999999999999999999999999999999999   33334444444555555


Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF  161 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~  161 (455)
                      ..++. .+++.|+++|++.+...+....++.|++|+|+|+++.++.+....+|..++|.+++.+.+.   .+||+.|++.
T Consensus        87 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~  163 (392)
T PRK10473         87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTM  163 (392)
T ss_pred             HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHH
Confidence            56666 8889999999999988999999999999999999999999999999999999999988877   8999999999


Q ss_pred             hHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhh
Q psy3467         162 GLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTE  241 (455)
Q Consensus       162 ~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (455)
                      +.+.++..++.+++.||+++++++.++                  +.....++.+|+++++...+...+..........+
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPARAPAAS------------------SKPRENSESLLNRFFLSRLVITTLSVTVILTFVNT  225 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccCCcc------------------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888887777777777876433211100                  00112256677777766555544444444455667


Q ss_pred             hhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         242 LPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       242 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .|.+.++++|+++.+.+.......++..++.++.+++.||+++|+.
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~  271 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL  271 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            7888888889999999998888999999999999999999998854

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.93  E-value=2.5e-24  Score=210.07  Aligned_cols=255  Identities=13%  Similarity=0.090  Sum_probs=179.2

Q ss_pred             HHHHHHHHhhhhhcccCcccc---cccchhhHHH---HHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh
Q psy3467          13 VSRVINTKLTRRVHHKDGSFI---WTTAEQGYVL---SSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG   83 (455)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~---~s~~~~~~~~---s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~   83 (455)
                      ++......++...|.+.+|++   .++.+.+...   +...++..++++++|+++||+|   ..........+....+++
T Consensus        33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~  112 (432)
T PRK10406         33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC  112 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence            333333334444445555653   4454444444   4445555599999999999999   344444444444555544


Q ss_pred             hhhH---------HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc-----c
Q psy3467          84 HSIL---------ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY-----G  149 (455)
Q Consensus        84 ~~~~---------~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~-----~  149 (455)
                      ++++         .+++.|+++|++.|..++...++++|++|+|+|+++.+..+.+...|..+++.+...+...     .
T Consensus       113 ~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  192 (432)
T PRK10406        113 LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAEL  192 (432)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            4433         5899999999999999999999999999999999999999998889988888776555420     0


Q ss_pred             cCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHH
Q psy3467         150 FAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHM  229 (455)
Q Consensus       150 ~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (455)
                      ...|||+.|++.++++++. +......||+|+++       ++.            +++..++++++|+++.+...+...
T Consensus       193 ~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~-------~~~------------~~~~~~~~~l~~~~~~~~~~~~~~  252 (432)
T PRK10406        193 REWGWRIPFALGAVLAVVA-LWLRRQLDETSQQE-------TRA------------LKEAGSLKGLWRNRRAFIMVLGFT  252 (432)
T ss_pred             hccchHHHHHHHHHHHHHH-HHHHhcCCCCchHH-------Hhh------------hcccccHHHHHhhHHHHHHHHHHH
Confidence            0179999999877776653 33334455543321       000            011235688888888776665544


Q ss_pred             H-HHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         230 G-QNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       230 ~-~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      + .....+....+.|.++++.+|++..+.+...........+++++.|+++||++||+.
T Consensus       253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~  311 (432)
T PRK10406        253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS  311 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            4 356677788999999988789998888888888888888889999999999998853

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.93  E-value=4.6e-24  Score=209.32  Aligned_cols=258  Identities=13%  Similarity=0.144  Sum_probs=191.9

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh----hhH-HHHHH
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH----SIL-ALSII   92 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~----~~~-~~~~~   92 (455)
                      +...+|.+.++ |+++++.+++.+.+.++..+++++.|+++||+|   ..+....+..+........    +++ .+++.
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  126 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  126 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence            44556666777 999999999999999999999999999999999   3333333333333333322    345 78899


Q ss_pred             HHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHH-HHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHH
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT-VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      |++.|++.+...+.....+.|++|+|+|++++++.+.+.++|. ..+|+++..+...   .+||+.|++.+++.++..++
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888899999999999999999999999986 4566654444444   69999999998888776777


Q ss_pred             hhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCCh-----hhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3467         172 FLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPW-----KDIVSSLPFWAILIAHMGQNYGYETLMTELPTFM  246 (455)
Q Consensus       172 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (455)
                      ..+++||+|++.+..++++.+.  +..++.+.+ +++..+.     +.++|++.++...+..++.+...+....+.|.|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l  280 (452)
T PRK11273        204 AFAMMRDTPQSCGLPPIEEYKN--DYPDDYNEK-HEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL  280 (452)
T ss_pred             HHHHccCCHhhcCCCChhhhhh--ccccccccc-cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888876533222211110  000000000 1111112     2367889999888888888888888889999999


Q ss_pred             HHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         247 KQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       247 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      +++.|++..+.+.......++..++.++.|+++||++++
T Consensus       281 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        281 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            998899999999888888899999999999999999643

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.93  E-value=5.3e-24  Score=209.67  Aligned_cols=266  Identities=13%  Similarity=0.107  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL   87 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~   87 (455)
                      .+.+........+.+|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|   .......+..+.......+++.
T Consensus        45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~  124 (476)
T PLN00028         45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA  124 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH
Confidence            3334444445667788889999999999999999999999999999999999999   3333333444444445556677


Q ss_pred             -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh----cc--cCCCCchhHHH
Q psy3467          88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE----YG--FAGGWPSIFYV  160 (455)
Q Consensus        88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~----~~--~~~~wr~~f~~  160 (455)
                       .+++.|+++|++.+.. .....++.|++|+++|++++++.....++|..+++.+.+.+..    .+  ...|||+.|++
T Consensus       125 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i  203 (476)
T PLN00028        125 TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFV  203 (476)
T ss_pred             HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence             8889999999998764 4466789999999999999999988777888777666654432    10  01489999999


Q ss_pred             hhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHh
Q psy3467         161 FGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMT  240 (455)
Q Consensus       161 ~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (455)
                      .+++.++..++.+++.++.|+.+  .++.+++    .    +.++++....+++.+++++++.+.+..+...........
T Consensus       204 ~g~l~l~~~l~~~~~~~~~p~~~--~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (476)
T PLN00028        204 PGLLHIIMGILVLTLGQDLPDGN--YRELKKS----G----TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDN  273 (476)
T ss_pred             HHHHHHHHHHHHHHHcCcCCCCc--hhhHHhc----C----ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHh
Confidence            99988876666655544444321  1111000    0    000011112345667888888887777666666666778


Q ss_pred             hhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         241 ELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       241 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.|.|+.+++|+++.+++.+.+...++..++++++|+++||+++|+.
T Consensus       274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~  320 (476)
T PLN00028        274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFG  320 (476)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence            89999988789999999999999999999999999999999998753

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=3e-24  Score=208.11  Aligned_cols=278  Identities=14%  Similarity=0.156  Sum_probs=199.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH
Q psy3467           6 HTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA   82 (455)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~   82 (455)
                      ...+..+.+......+....+.+++++|.++++.+++.+++.++..+++++.|.++||+|   ..+....+..+......
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~   95 (405)
T TIGR00891        16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG   95 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777778888899999999999999999999999999999999999999   44444444455555566


Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC--CchhHH
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG--WPSIFY  159 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~--wr~~f~  159 (455)
                      +.+++ .+++.|+++|++.+...+...+++.|++|+|+|+++.++.+.+..+|..+++.+++.+.+.   .+  ||+.|+
T Consensus        96 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~---~~~~w~~~f~  172 (405)
T TIGR00891        96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV---WGDGWRALFF  172 (405)
T ss_pred             HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccHHHHHH
Confidence            66777 9999999999999999999999999999999999999999999999999999999998876   55  999998


Q ss_pred             HhhHHHHHHHHHhhhhcccCCCCCCCCChhHHH-HHhhhcccccCCCCC----CCCChhhhhc-C-hhHHHHHHHHHHHH
Q psy3467         160 VFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERK-YIMSSVWGLAGVASS----PPVPWKDIVS-S-LPFWAILIAHMGQN  232 (455)
Q Consensus       160 ~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~-~-~~~~~~~~~~~~~~  232 (455)
                      +.++..++ .++.....||+++.++..++++.. ...++..++++..++    ...+.++..+ + +.+..........+
T Consensus       173 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (405)
T TIGR00891       173 ISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFAN  251 (405)
T ss_pred             HHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence            86655544 444455667765422111111000 000000000000000    0001111111 1 11223333334444


Q ss_pred             HHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         233 YGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ........+.|.++++++|+++.+.+.+.+...++..++.++.+++.||+++|+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~  306 (405)
T TIGR00891       252 LYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA  306 (405)
T ss_pred             HHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            4455566788999988899999999999999999999999999999999999864

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=1.9e-24  Score=211.02  Aligned_cols=269  Identities=16%  Similarity=0.155  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh
Q psy3467           7 TAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG   83 (455)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~   83 (455)
                      ..+..+.+........+..|.+++|+|+|+.+.+++.+++.++..+++++.|+++||+|   ..........+.......
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~  102 (426)
T PRK12307         23 AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL  102 (426)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555667778888999999999999999999999999999999999999   444444455555555666


Q ss_pred             hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467          84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG  162 (455)
Q Consensus        84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~  162 (455)
                      ++++ .+++.|+++|++.+...+....++.|++|+|+|+++.++.+.+..+|.++++.+.+.+.+.   .+||+.|++..
T Consensus       103 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~---~~w~~~f~i~~  179 (426)
T PRK12307        103 ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA---YGWRAAFFVGL  179 (426)
T ss_pred             HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc---CCHHHHHHHHH
Confidence            6777 9999999999999999999999999999999999999999999999999999999988887   89999998754


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHH---HHHHHHHHHHH
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAH---MGQNYGYETLM  239 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  239 (455)
                      +..++ .+......||+++.++       +..+++.++.+...++...++++++|++.++......   +..........
T Consensus       180 ~~~~~-~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (426)
T PRK12307        180 LPVLL-VIYIRARAPESKEWEE-------AKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIF  251 (426)
T ss_pred             HHHHH-HHHHHHHCCCChHHHH-------hhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33222 2221222233321110       0000000000000011123567788887765443322   22223333456


Q ss_pred             hhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         240 TELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       240 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+.|.++++ .|.++.+.+...+...++..+++++.|++.||++||+.
T Consensus       252 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~  298 (426)
T PRK12307        252 GLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT  298 (426)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            788999988 69999999988888999999999999999999998753

>PRK03699 putative transporter; Provisional

Probab=99.93  E-value=1.1e-23  Score=203.24  Aligned_cols=257  Identities=13%  Similarity=0.086  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh
Q psy3467           7 TAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG   83 (455)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~   83 (455)
                      ..+..++.......++..+|++.+++|+|+++.+++.+.+.+++.+++++.|+++||+|   ..........+.......
T Consensus        12 ~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~   91 (394)
T PRK03699         12 SFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF   91 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667677777888889999999999999999999999999999999999999999   333333344455555566


Q ss_pred             hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh-cccCCCCchhHHHh
Q psy3467          84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE-YGFAGGWPSIFYVF  161 (455)
Q Consensus        84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~-~~~~~~wr~~f~~~  161 (455)
                      ++++ .+++.|+++|++.+...+....++.|++|+|+|+++.+..+....+|..++|.+.+.+.. .   .+||+.|.+.
T Consensus        92 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~gw~~~f~~~  168 (394)
T PRK03699         92 SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS---IEWYWVYACI  168 (394)
T ss_pred             cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHH
Confidence            6777 899999999999998889999999999999999999999999999999999999887754 4   6999999988


Q ss_pred             hHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhh
Q psy3467         162 GLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTE  241 (455)
Q Consensus       162 ~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (455)
                      +++.++..++.++  ++.|+.+++.++++              +++.    ++ ..++.++...+..++.....+....+
T Consensus       169 ~~~~~~~~~~~~~--~~~p~~~~~~~~~~--------------~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK03699        169 GLVYVAIFILTLF--SEFPALGKHAPKAD--------------KPVA----KE-KWGIGVLFLAIAALLYILAQLTFISW  227 (394)
T ss_pred             HHHHHHHHHHHHh--cCCccccccCcccc--------------Cccc----cc-cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777664443322  23232111100000              0000    11 12356666666667766777788899


Q ss_pred             hhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         242 LPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       242 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .|.|+++++|+|+.+.+.+.+.+.++..++.++.+++.||+++|+.
T Consensus       228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  273 (394)
T PRK03699        228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI  273 (394)
T ss_pred             HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence            9999988899999999999999999999999999999999999864

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.93  E-value=3.1e-24  Score=204.87  Aligned_cols=263  Identities=12%  Similarity=0.054  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhh
Q psy3467           9 YSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHS   85 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~   85 (455)
                      ...++...........+|...+|++.++.+.+++.+++.++..+++++.|+++||+|   ..+....+..+........+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   85 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA   85 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444454555555666677788999999999999999999999999999999999   33333333333333333333


Q ss_pred             -----hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHH
Q psy3467          86 -----IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFY  159 (455)
Q Consensus        86 -----~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~  159 (455)
                           +. .+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+.   .+||+.|+
T Consensus        86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~  162 (365)
T TIGR00900        86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIW  162 (365)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHH
Confidence                 66 8999999999999999999999999999999999999999999999999999999999988   89999999


Q ss_pred             HhhHHHHHHHHHhhhhc-ccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHH
Q psy3467         160 VFGLVGAVWSVAFLLYC-YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETL  238 (455)
Q Consensus       160 ~~~~~~~~~~i~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (455)
                      +.++..++..+..+... ||++++++ .+.+++. .           ++....+++++|+|.++......++........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (365)
T TIGR00900       163 VDAVGFAISALLIVSVRIPELAASEI-QALSNAV-L-----------RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPA  229 (365)
T ss_pred             HHHHHHHHHHHHHHhcccccCCCccc-cccchhH-H-----------HHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            88776665444333322 22222111 1101000 0           011223567788888888877777777766666


Q ss_pred             H-hhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         239 M-TELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       239 ~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      . .+.|.+.++.+|.++.+.+.......++..++.++.+++.||.++|+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  279 (365)
T TIGR00900       230 IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL  279 (365)
T ss_pred             HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence            6 788988888789999999999999999999999999999999988753

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.93  E-value=1.2e-23  Score=201.05  Aligned_cols=257  Identities=9%  Similarity=0.078  Sum_probs=191.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccCc-ccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHH
Q psy3467           5 QHTAYSIFVSRVINTKLTRRVHHKDG-SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPV   80 (455)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~   80 (455)
                      ....++..++..+-...++..+.+.+ |+|+|++|.+++.+++.+++.++.++.|.+.||+|   +......+..+....
T Consensus        37 ~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~  116 (462)
T PRK15034         37 WISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVW  116 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            34455566666666777777777655 89999999999999999999999999999999999   333333333444444


Q ss_pred             HHhh-----hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH-----hc-
Q psy3467          81 AAGH-----SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS-----EY-  148 (455)
Q Consensus        81 ~~~~-----~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~-----~~-  148 (455)
                      ..++     +++ .+++.|++.|++ +..++.....+++|+|+|+||+++++.....++|..+++.+...+.     +. 
T Consensus       117 ~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~  195 (462)
T PRK15034        117 LGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL  195 (462)
T ss_pred             HHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4443     677 999999999998 6688999999999999999999999998777777776666655433     11 


Q ss_pred             ---------ccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcCh
Q psy3467         149 ---------GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSL  219 (455)
Q Consensus       149 ---------~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (455)
                               +...+||.+.++..++.++..++.+++.++.++.+                       ....+.++.+|+|
T Consensus       196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~-----------------------~~~~~~~~vlk~~  252 (462)
T PRK15034        196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR-----------------------ASIADQLPVLQRL  252 (462)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-----------------------cCHHHHHHHhCCC
Confidence                     01135788888887877776666666655533211                       1112236789999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         220 PFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.|.+.+.+++.+..+.++..++|.|.++.+  +............+...+.++++|+++||+|+|++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v  318 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV  318 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence            9999999999999999999999999998865  33322222333456778888999999999999865

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=1.9e-23  Score=206.45  Aligned_cols=277  Identities=19%  Similarity=0.177  Sum_probs=213.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh
Q psy3467           7 TAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG   83 (455)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~   83 (455)
                      .....++.......+.+.+|.+.+|+|.+..+.+++.+.+.++..++.+++|+++||+|   ..+....+..+....+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   94 (471)
T PRK10504         15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL   94 (471)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence            44455566666666777788888999999999999999999999999999999999999   333334444444445556


Q ss_pred             hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467          84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG  162 (455)
Q Consensus        84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~  162 (455)
                      +++. .+++.|+++|++.+...+....++.|++|+++|+++.+......++|..++|.+++.+.++   .+||+.|++..
T Consensus        95 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~  171 (471)
T PRK10504         95 SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINI  171 (471)
T ss_pred             hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHH
Confidence            6667 8899999999999999999999999999999999999999999999999999999999998   89999999988


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHH-----------hhhcc-----------------------cccCCCCCC
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYI-----------MSSVW-----------------------GLAGVASSP  208 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~-----------~~~~~-----------------------~~~~~~~~~  208 (455)
                      +...+..+......|+.+..+++.+.......           .+...                       .++++.+++
T Consensus       172 ~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (471)
T PRK10504        172 PVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRA  251 (471)
T ss_pred             HHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            87777666666666665443332222111000           00000                       001111223


Q ss_pred             CCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         209 PVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ..+ .+++|||.+.......++..........+.|.|++..+|.++.+.++......++..++.++.+++.||+++|+.
T Consensus       252 ~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~  329 (471)
T PRK10504        252 LFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV  329 (471)
T ss_pred             ccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            334 358899999888888888777777777888999988789999999999888888888888999999999998864

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.92  E-value=2.3e-24  Score=217.33  Aligned_cols=275  Identities=16%  Similarity=0.238  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHHh
Q psy3467          10 SIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAG   83 (455)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~~   83 (455)
                      ..+.....+......+++++++|+++.++.|++.+.+.++++++.++.+++.||+|      ..++..++..+...+..+
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf  120 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF  120 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence            34445556677888889999999999999999999999999999999999999999      444444444444332210


Q ss_pred             ------------------------------------------------hhhH-HHHHHHHHHhhcccCchhhHHHHHhcc
Q psy3467          84 ------------------------------------------------HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKW  114 (455)
Q Consensus        84 ------------------------------------------------~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~  114 (455)
                                                                      ...+ .++++|+++|+|.+..++...+++.|+
T Consensus       121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~  200 (633)
T TIGR00805       121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDF  200 (633)
T ss_pred             hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhcc
Confidence                                                            0024 788999999999999999999999999


Q ss_pred             cCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccC-------------C------CCchhHHHhhHHHHHHHHHhhhh
Q psy3467         115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFA-------------G------GWPSIFYVFGLVGAVWSVAFLLY  175 (455)
Q Consensus       115 ~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~-------------~------~wr~~f~~~~~~~~~~~i~~~~~  175 (455)
                      +|+++|++++++++.+..+|..+|+++++.+.+...+             .      .||..|++.+++.++..++.+ +
T Consensus       201 ~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~  279 (633)
T TIGR00805       201 AKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-F  279 (633)
T ss_pred             CCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            9999999999999999999999999999998764110             0      266678888888777565544 4


Q ss_pred             cccC-CCCCCCCCh--hHHHHHhhhcccccCC----CCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy3467         176 CYEE-PEAHPNIAE--DERKYIMSSVWGLAGV----ASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQ  248 (455)
Q Consensus       176 ~~e~-~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (455)
                      +|++ |+.+.+.+.  .+++...+...+...+    .++.....+++++||.++...+..++.....+.+..++|.|+++
T Consensus       280 ~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~  359 (633)
T TIGR00805       280 FPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLEN  359 (633)
T ss_pred             CccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4543 332211111  1110000000000000    00112345678999999999999999999999999999999999


Q ss_pred             HhcCccccchhhchhHHH-HHHHHHHHHHHHHHHhhhc
Q psy3467         249 VLHFNIKENGTLSALPYL-AMWIFSMFASFIADSMITS  285 (455)
Q Consensus       249 ~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r  285 (455)
                      ++|+++.+++++.....+ +..++.+++|++.||++.+
T Consensus       360 ~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       360 QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            999999999999887665 5688999999999999865

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=8.5e-23  Score=195.86  Aligned_cols=254  Identities=13%  Similarity=0.063  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--H-HHHH-HHHHHHHHHHHHhhh
Q psy3467          11 IFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--I-GMLI-NSVFAFLVPVAAGHS   85 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~-~l~~-~~~~~~~~~~~~~~~   85 (455)
                      .+..........|.+|. +++++|.|+++.|++.+.+.+...+.+++.|.++||+|  . .+.. .....+.......++
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~   85 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR   85 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence            44444555555566665 56789999999999999999999999999999999999  2 2322 223333444556667


Q ss_pred             hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhH--HHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467          86 IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRL--GAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG  162 (455)
Q Consensus        86 ~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~  162 (455)
                      ++ .+++.|+++|.+.+...|...++..|+.|+++|++.  .+....+.++|..++|.+++.+.+.   .+||+.|++.+
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~  162 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAA  162 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHH
Confidence            77 788899999988888888889999999887777754  5788888999999999999999887   89999999998


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      ++.++..++.++++||.|+++++.+                    +..+.++.+++++++......++.+........+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGAL--------------------TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINM  222 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCccccc--------------------CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhh
Confidence            8877766666777888654322100                    01122345666666665555555555555566778


Q ss_pred             hHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         243 PTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       243 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      |.++++++|.++.+.+...........++.++.|++.||+++|+.
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  267 (375)
T TIGR00899       223 PLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL  267 (375)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH
Confidence            889888899999999988777777778888999999999998864

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.92  E-value=2.9e-23  Score=202.88  Aligned_cols=258  Identities=14%  Similarity=0.145  Sum_probs=189.9

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh----hhhH-HHHHHHHHH
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG----HSIL-ALSIIRFIQ   96 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~----~~~~-~~~~~r~l~   96 (455)
                      .|.+++ +|.++++.+++.+++.++..+++++.|+++||+|   .......+..+.......    .++. .+.+.|++.
T Consensus        50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  128 (438)
T TIGR00712        50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLN  128 (438)
T ss_pred             hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            444444 5999999999999999999999999999999999   222222222233222222    2345 778899999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH-hcccCCCCchhHHHhhHHHHHHHHHhhhh
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS-EYGFAGGWPSIFYVFGLVGAVWSVAFLLY  175 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~-~~~~~~~wr~~f~~~~~~~~~~~i~~~~~  175 (455)
                      |++.+...+.....+.|++|+|+|++++++.+.+.++|..+++.+.+... ..   .+||+.|++.++++++..++.+++
T Consensus       129 g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       129 GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF---NDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988776544 34   689999999998888877777778


Q ss_pred             cccCCCCCCCCChhHHHH-HhhhcccccCCCCCCCCC-hhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCc
Q psy3467         176 CYEEPEAHPNIAEDERKY-IMSSVWGLAGVASSPPVP-WKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFN  253 (455)
Q Consensus       176 ~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  253 (455)
                      +||+|++++..+.++.+. ..++..++++++.+.+.. .+.++|++.++...+..++.+...+....+.|.|+++.+|++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s  285 (438)
T TIGR00712       206 MRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFA  285 (438)
T ss_pred             ccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC
Confidence            888765432111111000 000000000000000011 124678888888888777777777888899999999988999


Q ss_pred             cccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         254 IKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      +.+.++......++..++.+.+|++.||+++++
T Consensus       286 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       286 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            999999999999999999999999999997653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.92  E-value=3.3e-23  Score=209.53  Aligned_cols=174  Identities=14%  Similarity=0.196  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      ++..+.+......+...+|.+.++++++..+.+++.+++.++.+++++++|+++||+|   ..++...+..++..+..++
T Consensus       173 ~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa  252 (742)
T TIGR01299       173 GLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555667778888899999999999999999999999999999999999   4444445555555566667


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc----------cCCC
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG----------FAGG  153 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~----------~~~~  153 (455)
                      +++ .++++|+++|++.+...+...+++.|++|+++|++.++++..+..+|.++++.++..+....          ...+
T Consensus       253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~g  332 (742)
T TIGR01299       253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHS  332 (742)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccccc
Confidence            777 99999999999999999999999999999999999999999999999999999887765420          0136


Q ss_pred             CchhHHHhhHHHHHHHHHhhhhcccCCCC
Q psy3467         154 WPSIFYVFGLVGAVWSVAFLLYCYEEPEA  182 (455)
Q Consensus       154 wr~~f~~~~~~~~~~~i~~~~~~~e~~~~  182 (455)
                      ||+.+++.+++.++ .++..+++||+|++
T Consensus       333 WR~l~~i~~lp~ll-~ll~~~~lPESPrw  360 (742)
T TIGR01299       333 WRVFVIVCAFPCVF-AIGALTFMPESPRF  360 (742)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHcCCCHHH
Confidence            89998887776655 56667889999875

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=8.1e-24  Score=209.75  Aligned_cols=256  Identities=15%  Similarity=0.192  Sum_probs=168.3

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh------------hhhH-HHHHH
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG------------HSIL-ALSII   92 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~------------~~~~-~~~~~   92 (455)
                      .++++.++++.+++.+++.++..++++++|+++||+|   ..++...+..+....+..            .+.+ .+++.
T Consensus        47 ~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  126 (479)
T PRK10077         47 NLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY  126 (479)
T ss_pred             cccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHH
Confidence            3445889999999999999999999999999999999   333333333333333332            1224 77899


Q ss_pred             HHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc-----cCCCCchhHHHhhHHHHH
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG-----FAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~-----~~~~wr~~f~~~~~~~~~  167 (455)
                      |+++|++.|...+...++++|++|+|+|++++++.+.+..+|..+++.++..+....     ...|||+.|++.+++.++
T Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  206 (479)
T PRK10077        127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALL  206 (479)
T ss_pred             HHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988877664210     116899999998887777


Q ss_pred             HHHHhhhhcccCCCCCCCCC-hhHHHHHhhhcccccCCCCCCCCChhhhhc-----ChhH-----HH----HHHHHHHHH
Q psy3467         168 WSVAFLLYCYEEPEAHPNIA-EDERKYIMSSVWGLAGVASSPPVPWKDIVS-----SLPF-----WA----ILIAHMGQN  232 (455)
Q Consensus       168 ~~i~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~----~~~~~~~~~  232 (455)
                      .. +..+++||+|++...++ +++.+...++..+.++. ++...+.++.++     .+..     ..    .....+...
T Consensus       207 ~~-~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (479)
T PRK10077        207 FL-MLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQF  284 (479)
T ss_pred             HH-HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHH
Confidence            44 44677899876421111 11111111110000000 000000011110     0000     00    111112222


Q ss_pred             HHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         233 YGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ...+....+.|.+.++ .|.+..+........++...++.++++++.||+|||+.
T Consensus       285 ~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~  338 (479)
T PRK10077        285 VGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL  338 (479)
T ss_pred             hChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            2233445566777666 78888777777777888899999999999999998854

>KOG1330|consensus

Probab=99.92  E-value=5.7e-25  Score=201.84  Aligned_cols=270  Identities=15%  Similarity=0.195  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH
Q psy3467           6 HTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA   82 (455)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~   82 (455)
                      .....+.+..+....++-..+++++.+|++++..|++++.+.+.+++.+|+.|+++|||.   +...+..+...+...++
T Consensus        37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~  116 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG  116 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH
Confidence            345556677777777888899999999999999999999999999999999999999999   33333344444444455


Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF  161 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~  161 (455)
                      +.+.+ +++++|.+.|+|.+...|+++++++|.+|.++|++.+++++.+.++|..+|.+.+..+.+..  ..|||.|+..
T Consensus       117 fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~--~~Wr~af~~~  194 (493)
T KOG1330|consen  117 FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT--FWWRWAFRGS  194 (493)
T ss_pred             HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc--cceEEEEEee
Confidence            55666 99999999999999999999999999999999999999999999999999999999998861  3499999999


Q ss_pred             hHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhh
Q psy3467         162 GLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTE  241 (455)
Q Consensus       162 ~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (455)
                      +++++++.++.+++.+|+++..+.+.+.+.+.        .........+.+.+.+++.+....+.+....+....+.-+
T Consensus       195 avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~--------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww  266 (493)
T KOG1330|consen  195 AVLGVIVGLLVFLFVREPERGARDEVDGENKM--------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWW  266 (493)
T ss_pred             hHHHHHHHHHHHhhccCcccccccccccCCcC--------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchh
Confidence            99999999999999998665422111111000        0000112234455566677666666666666666666677


Q ss_pred             hhHHHHHH---hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         242 LPTFMKQV---LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       242 ~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      .|.+....   .|.+..+..++..+...++.+|.+++|.++||+.++
T Consensus       267 ~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~  313 (493)
T KOG1330|consen  267 APAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRI  313 (493)
T ss_pred             hhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHh
Confidence            77665432   345666666667778889999999999999998773

>PRK10133 L-fucose transporter; Provisional

Probab=99.92  E-value=6.2e-23  Score=199.67  Aligned_cols=261  Identities=13%  Similarity=0.129  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHH---HHhh
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPV---AAGH   84 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~---~~~~   84 (455)
                      .++-..........+|++++++|+|+++.++..+.+.+++.+++++.|+++||+|   .......+..+....   ...+
T Consensus        35 ~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a  114 (438)
T PRK10133         35 FFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444555666678889999999999999999999999999999999999999   333333444444433   2456


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc--------------
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG--------------  149 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~--------------  149 (455)
                      +++ .++++|+++|+|.+...+..+.++.|+.++++|.+.+++.+....+|..+++.+++.+....              
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~  194 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTP  194 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccCh
Confidence            677 99999999999999999999999999877777777899999999999999999987654110              


Q ss_pred             -----c----CCCCchhHHHhhHH-HHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcCh
Q psy3467         150 -----F----AGGWPSIFYVFGLV-GAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSL  219 (455)
Q Consensus       150 -----~----~~~wr~~f~~~~~~-~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (455)
                           .    ..+||++|+....+ .++..+......||.+++++  + +++             ..+...+.++++|+|
T Consensus       195 ~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~--~-~~~-------------~~~~~~~~~~ll~~~  258 (438)
T PRK10133        195 EQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--S-DAK-------------QGSFSASLSRLARIR  258 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--c-ccc-------------ccchhhhHHHHHhCc
Confidence                 0    02466666543333 33322222223343211110  0 000             011123346888999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         220 PFWAILIAHMGQNYGYETLMTELPTFM-KQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .++...+..++..........+.+.|+ ++.+|.++.+.+.....+.++..+++++++++.||+++|+.
T Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~  327 (438)
T PRK10133        259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            888777777777777777778888885 66689999999999999999999999999999999999854

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=9.6e-23  Score=202.63  Aligned_cols=254  Identities=13%  Similarity=0.102  Sum_probs=170.1

Q ss_pred             cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhh------H-HHHHHHHHHhhccc
Q psy3467          32 FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSI------L-ALSIIRFIQGLGEG  101 (455)
Q Consensus        32 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~------~-~~~~~r~l~G~~~~  101 (455)
                      .+.++.+.+++.+.+.++..+++++.|+++||+|   .......+..+....+..+++      + .++++|+++|++.+
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  130 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG  130 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence            3456678899999999999999999999999999   333333334444444444333      5 89999999999999


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc--------------------cCCCCchhHHHh
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG--------------------FAGGWPSIFYVF  161 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~--------------------~~~~wr~~f~~~  161 (455)
                      ...+....++.|++|+|+|+++.++.+....+|..+++.++..+...-                    ...+||+.+.+.
T Consensus       131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~  210 (502)
T TIGR00887       131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG  210 (502)
T ss_pred             hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence            999999999999999999999999999999999999999887654210                    013799999887


Q ss_pred             hHHHHHHHHHhhhhcccCCCCC---CCCChhHHHHHhhhcc---cccC--------CCCCCCCChhhhhcC---hhH---
Q psy3467         162 GLVGAVWSVAFLLYCYEEPEAH---PNIAEDERKYIMSSVW---GLAG--------VASSPPVPWKDIVSS---LPF---  221 (455)
Q Consensus       162 ~~~~~~~~i~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~---~~~---  221 (455)
                      ++++++ ..+..+++||+|++.   ++.+++.++...+...   +++.        ++++.+.++++++++   ++.   
T Consensus       211 ~ip~~i-~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  289 (502)
T TIGR00887       211 AVPALL-ALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKH  289 (502)
T ss_pred             HHHHHH-HHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHH
Confidence            777666 555567889999852   2221111111111100   0000        001112356777653   121   


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchh------------hchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         222 -WAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGT------------LSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       222 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                       +......+......++...+.|.++++ .|++..+.+.            ......++.+++.++++++.||+|||+.
T Consensus       290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~  367 (502)
T TIGR00887       290 LLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI  367 (502)
T ss_pred             HHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Confidence             112223334444555667778888876 6887654321            1223344566788889999999999864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11043 putative transporter; Provisional

Probab=99.91  E-value=1e-22  Score=197.06  Aligned_cols=251  Identities=16%  Similarity=0.179  Sum_probs=195.0

Q ss_pred             HHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-
Q psy3467          12 FVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-   87 (455)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-   87 (455)
                      .........+.|.+|++.+++|.++++.+++.+++.++..++++++|+++||+|   ..+....+..+........+++ 
T Consensus        16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~   95 (401)
T PRK11043         16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA   95 (401)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            334445566677788889999999999999999999999999999999999999   3333333444444455556677 


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+++.|+++|++.+...+...+++.|++++++|++..+.......+|..++|.+++.+.+.   .+||+.|++.+++.++
T Consensus        96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~  172 (401)
T PRK11043         96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLL  172 (401)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHH
Confidence            8899999999998888888889999999999999999999989999999999999999988   8999999998888777


Q ss_pred             HHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy3467         168 WSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMK  247 (455)
Q Consensus       168 ~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (455)
                      ..++.+ +.+|+++++++                    ++++.++++++|+|+++...+...+..........+.|.+.+
T Consensus       173 ~~~~~~-~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  231 (401)
T PRK11043        173 LILPTL-RLKPSKKARKQ--------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILE  231 (401)
T ss_pred             HHHHHH-HcCCCCCcccc--------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            555444 34443321110                    011123467788888776555555555555666778888887


Q ss_pred             HHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       248 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      + +|+++.+.++......++..++.+..+++.||+++|+.
T Consensus       232 ~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~  270 (401)
T PRK11043        232 Q-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL  270 (401)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            6 79999999988777788888999999999999988753

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=1.7e-22  Score=195.18  Aligned_cols=271  Identities=20%  Similarity=0.250  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL   87 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~   87 (455)
                      .+.+...........|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|   .......+..+........+++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  105 (398)
T TIGR00895        26 MLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNV  105 (398)
T ss_pred             HHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccch
Confidence            3344444455666778888999999999999999999999999999999999999   3333333344444445556677


Q ss_pred             -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHH
Q psy3467          88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGA  166 (455)
Q Consensus        88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~  166 (455)
                       .+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.+++.+.+.   .+||+.|++.+++.+
T Consensus       106 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~  182 (398)
T TIGR00895       106 TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPL  182 (398)
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHH
Confidence             8899999999999999999999999999999999999999999999999999999999887   899999999877777


Q ss_pred             HHHHHhhhhcccCCCCCCCCChhHHHHH-hh---hccccc----CCCCC----CCCChhhhhcC---hhHHHHHHHHHHH
Q psy3467         167 VWSVAFLLYCYEEPEAHPNIAEDERKYI-MS---SVWGLA----GVASS----PPVPWKDIVSS---LPFWAILIAHMGQ  231 (455)
Q Consensus       167 ~~~i~~~~~~~e~~~~~~~~~~~~~~~~-~~---~~~~~~----~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~  231 (455)
                      +..++...++||+++...+.++++++.. ++   +..+++    .++++    .+...+.++++   +..+.+.+..++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (398)
T TIGR00895       183 LLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFML  262 (398)
T ss_pred             HHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            6677777778887653222222111111 10   000000    00000    11112223332   2334444455555


Q ss_pred             HHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         232 NYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      .........+.|.+.+ ++|.++.+.+...+...++..++.++.+++.||+++|
T Consensus       263 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       263 LVGVYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            6666667778885554 4899999999999999999999999999999999987

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=2e-22  Score=196.74  Aligned_cols=230  Identities=15%  Similarity=0.078  Sum_probs=161.7

Q ss_pred             HHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH---------HHHHHHHHHhhcccCchhhHHHHH
Q psy3467          44 SSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL---------ALSIIRFIQGLGEGPIVPCTHALL  111 (455)
Q Consensus        44 s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~---------~~~~~r~l~G~~~~~~~~~~~~~i  111 (455)
                      ++..++..+++++.|+++||+|   ..+....+..+....+++++++         .+++.|+++|++.|..++....++
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~  150 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA  150 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence            3556777899999999999999   4444555555566666666665         388899999999999999999999


Q ss_pred             hcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc-----cCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCC
Q psy3467         112 AKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG-----FAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNI  186 (455)
Q Consensus       112 ~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~-----~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~  186 (455)
                      .|++|+|+|++..+..+.+..+|..++..+...+....     ...|||+.|++.+++.++ .+......||+|+..+. 
T Consensus       151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~-  228 (438)
T PRK09952        151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQ-  228 (438)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHH-
Confidence            99999999999999999999999999887776664310     016999999988776544 33333345555432111 


Q ss_pred             ChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHH
Q psy3467         187 AEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILI-AHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPY  265 (455)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~  265 (455)
                          ++   +. +    +++++....+.++|+|+.+.... ..++.....+....+.|.|.++.+|.+..+........+
T Consensus       229 ----~~---~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g  296 (438)
T PRK09952        229 ----QH---EQ-A----AAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVG  296 (438)
T ss_pred             ----Hh---hc-c----cccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                00   00 0    00111112234667776665543 345556667777889999998888888876555555566


Q ss_pred             HHHHHHHHHHHHHHHHhhhccc
Q psy3467         266 LAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       266 ~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ....++.++.|+++||++||+.
T Consensus       297 ~~~~i~~~~~g~l~Dr~grr~~  318 (438)
T PRK09952        297 GLSCLTIPCFAWLADRFGRRRV  318 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCchHH
Confidence            7778888899999999999854

>TIGR00897 2A0118 polyol permease family

Probab=99.91  E-value=2.9e-22  Score=193.74  Aligned_cols=246  Identities=12%  Similarity=0.019  Sum_probs=183.6

Q ss_pred             hhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHH---Hh-hhhH-HHHHHHHH
Q psy3467          24 RVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVA---AG-HSIL-ALSIIRFI   95 (455)
Q Consensus        24 ~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~---~~-~~~~-~~~~~r~l   95 (455)
                      .++...+|+|.|+++.+++.+.+.++..+++++.|+++||+|   .......+..+.....   .. .+++ .+++.|++
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  114 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI  114 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence            344455788999999999999999999999999999999999   2233333333322221   22 2355 78889999


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHH-HHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhh
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGT-VFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL  174 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~  174 (455)
                      +|++.+...+.....+.|++|+|+|++++++.+.+.++|. .++|.+++.+.+.   .||+..++.......+..++..+
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~  191 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALF  191 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHh
Confidence            9999888888888889999999999999999999999997 6899999888876   78776666544443343444444


Q ss_pred             hcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcc
Q psy3467         175 YCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNI  254 (455)
Q Consensus       175 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  254 (455)
                      +.+|.++.+++.+ +++             .++....+++++|+|.++...+..++.....+....+.|.|.++ +|+++
T Consensus       192 ~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~  256 (402)
T TIGR00897       192 SNKDIFTPQHMQT-REK-------------FSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFST  256 (402)
T ss_pred             ccCCCCCcccccC-Ccc-------------hhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCh
Confidence            4554322111100 000             01111234678899999888888888888888888999999876 89999


Q ss_pred             ccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         255 KENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       255 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+.+.......++..++.+..|++.||++||+.
T Consensus       257 ~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  289 (402)
T TIGR00897       257 SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT  289 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence            999988888999999999999999999998753

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.91  E-value=4.7e-22  Score=192.01  Aligned_cols=251  Identities=20%  Similarity=0.226  Sum_probs=195.6

Q ss_pred             HHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-
Q psy3467          12 FVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-   87 (455)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-   87 (455)
                      .+..+......+.+|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|   ..........+........+++ 
T Consensus        18 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~   97 (394)
T PRK11652         18 AVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLT   97 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence            344455566667788889999999999999999999999999999999999999   3334444444444455556677 


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+++.|+++|++.+...+....+..|.+++++|+++.+..+.+..+|..++|.+++.+.+.   .|||+.|++.++..++
T Consensus        98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~  174 (394)
T PRK11652         98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAG  174 (394)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHH
Confidence            8999999999999888888889999999999999999999999999999999999999887   8999999998877776


Q ss_pred             HHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy3467         168 WSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMK  247 (455)
Q Consensus       168 ~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (455)
                      ..++..++.||+++++++.++                   ...++++.+|+|+++...+..+.............+.+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T PRK11652        175 VTFSMARWMPETRPADARRTR-------------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMG  235 (394)
T ss_pred             HHHHHHHhCCccCccccchhH-------------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            566666677776543221100                   1123466778887776665555555555556677788888


Q ss_pred             HHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy3467         248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMIT  284 (455)
Q Consensus       248 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  284 (455)
                      +.+|.++.+.++......++..++.++.+++.||.++
T Consensus       236 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        236 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999998888777777777888888888888773

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.91  E-value=3.3e-22  Score=191.99  Aligned_cols=256  Identities=18%  Similarity=0.047  Sum_probs=190.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHH
Q psy3467           4 VQHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPV   80 (455)
Q Consensus         4 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~   80 (455)
                      +.......++.......+.+.+|.+.+|+|.|+++.|++.+.+.++..+++++.|+++||+|   .......+..+....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777777888889999999999999999999999999999999999999999   344444444555555


Q ss_pred             HHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHH
Q psy3467          81 AAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFY  159 (455)
Q Consensus        81 ~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~  159 (455)
                      ...++++ .+++.|+++|++.+...+...+.+.|..++++|+++++....+.++|..+||.+++.+.+.   ..|+. .+
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~-~~  163 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE---LMSVL-PW  163 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---ccchH-HH
Confidence            5666777 9999999999999988888888888999999999999999999999999999999998764   33333 33


Q ss_pred             HhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHH
Q psy3467         160 VFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLM  239 (455)
Q Consensus       160 ~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (455)
                      ..+..... .+.. .+.+.++++++                     +++..+.++.+|+|.++......+..........
T Consensus       164 ~~~~~~~~-~~~~-~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (381)
T PRK03633        164 VTGLVLAA-ILPL-LFTRILNQQAE---------------------NHDSTSIWPMLKLRQARLGVNGCIISGIVLGSLY  220 (381)
T ss_pred             HHHHHHHH-HHHH-HHhcccCCCCC---------------------CCCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            33322222 1111 12222211110                     0011234667788777655444444444455566


Q ss_pred             hhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         240 TELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       240 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .++|.|.++ .|.++.+.+...+...++..+++++.|++.||+++|+.
T Consensus       221 ~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  267 (381)
T PRK03633        221 GLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV  267 (381)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH
Confidence            788999987 69999999998888899999999999999999998854

>TIGR00896 CynX cyanate transporter

Probab=99.91  E-value=1.6e-22  Score=192.44  Aligned_cols=242  Identities=14%  Similarity=0.066  Sum_probs=186.1

Q ss_pred             HHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHH
Q psy3467          19 TKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRF   94 (455)
Q Consensus        19 ~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~   94 (455)
                      ..+.+.+|.+++|+|.|+++.+++.+++.++..+++++.|+++||+|   ..+.......+..... ..++. .+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999   3333333333333333 44556 8889999


Q ss_pred             HHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhh
Q psy3467          95 IQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL  174 (455)
Q Consensus        95 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~  174 (455)
                      +.|++.+...+.....+.|+++ ++|+++.+..+.+.++|..+++.+++.+.+... .+||+.|...+.+.++..   ..
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~---~~  170 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLAL---LA  170 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH---HH
Confidence            9999999888888889999886 789999999999999999999999988876510 139999887665544322   23


Q ss_pred             hcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcc
Q psy3467         175 YCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNI  254 (455)
Q Consensus       175 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  254 (455)
                      ++||.++++++.+                  +++..+.++++|+|.++...+..++..........+.|.++++ .|+++
T Consensus       171 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~  231 (355)
T TIGR00896       171 WIPQVRRRVAANQ------------------TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASA  231 (355)
T ss_pred             HhhhhccccCCCC------------------CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH
Confidence            3454432211000                  1111234677888888877777777777777888899999987 79999


Q ss_pred             ccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         255 KENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       255 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      .+.+...+...++..+++++.|++.||+++|
T Consensus       232 ~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       232 ATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence            9999999999999999999999999999654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.91  E-value=4.2e-22  Score=194.50  Aligned_cols=259  Identities=16%  Similarity=0.131  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHH-HHHH-----HHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYV-LSSF-----FYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV   78 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~-~s~~-----~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~   78 (455)
                      ....+++......+....|.+.+|++.++++.+.. .+..     .++..+++++.|.++||+|   ..+....+..+..
T Consensus        21 ~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  100 (434)
T PRK15075         21 TSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGT  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence            34455555555556666777888999888776543 3332     2223478999999999999   4444555555666


Q ss_pred             HHHHhhhhH-H--------HHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH---
Q psy3467          79 PVAAGHSIL-A--------LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS---  146 (455)
Q Consensus        79 ~~~~~~~~~-~--------~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~---  146 (455)
                      ..+.+++++ .        +++.|+++|++.+...+....++.|++|+|+|++++++.+.+.++|..+++.+++.+.   
T Consensus       101 ~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~  180 (434)
T PRK15075        101 LLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWL  180 (434)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            666666665 2        6889999999999999999999999999999999999999998888888888887763   


Q ss_pred             -----hcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhH
Q psy3467         147 -----EYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPF  221 (455)
Q Consensus       147 -----~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (455)
                           +.   .|||++|++..+...+     .++.++.+++.+   +..++   ++       +++.+..+++..++++.
T Consensus       181 ~~~~~~~---~gWr~~f~~~~~~~~~-----~~~~~~~~~e~~---~~~~~---~~-------~~~~~~~~~~~~~~~~~  239 (434)
T PRK15075        181 SPAQMAE---WGWRIPFLIGCLIVPF-----IFLIRRSLEETE---EFLAR---KH-------RPSMREIFRSLAANWRI  239 (434)
T ss_pred             CHHHHhc---cchHHHHHHHHHHHHH-----HHHHHHhcCCCH---HHHHh---hh-------ccccccHHHHHHHhHHH
Confidence                 33   7999999875433211     122222221110   00000   00       01111223444555554


Q ss_pred             HHH-HHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         222 WAI-LIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       222 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.. ....+......+....+.|.|+++.+|++..+.++......++..++.++.|++.||++||+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~  306 (434)
T PRK15075        240 VLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            433 233344555666788899999998889999998888888889999999999999999998854

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.90  E-value=1.3e-22  Score=200.96  Aligned_cols=273  Identities=17%  Similarity=0.182  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHhhhhhcccCcccccc--------cchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH
Q psy3467          10 SIFVSRVINTKLTRRVHHKDGSFIWT--------TAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV   78 (455)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~~~~~~~s--------~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~   78 (455)
                      ..++.......+...++.+..+++.+        ..+.+++.+++.++..++++++|+++||+|   ..+....+..+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~  115 (481)
T TIGR00879        36 GGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGA  115 (481)
T ss_pred             HHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Confidence            33444444555566666666666666        889999999999999999999999999999   3333333334443


Q ss_pred             HHH---HhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHH---HHhHhcccC
Q psy3467          79 PVA---AGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLS---GLLSEYGFA  151 (455)
Q Consensus        79 ~~~---~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~---~~l~~~~~~  151 (455)
                      .++   ....++ .+++.|+++|++.+...+....++.|++|+|+|++++++.+.+..+|..+++.++   ....+.   
T Consensus       116 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~---  192 (481)
T TIGR00879       116 ILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT---  192 (481)
T ss_pred             HHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC---
Confidence            333   323334 7899999999999999999999999999999999999999999999999999999   555555   


Q ss_pred             CCCchhHHHhhHHHHHHHHHhhhhcccCCCCCC--CCChhHHHHHhhhccccc-----------------CCCCCCCCCh
Q psy3467         152 GGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHP--NIAEDERKYIMSSVWGLA-----------------GVASSPPVPW  212 (455)
Q Consensus       152 ~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  212 (455)
                      .+||+.|++.++..++ .++..+++||+|+...  ...++.++...+....++                 .+.+.....+
T Consensus       193 ~~w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (481)
T TIGR00879       193 LGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSW  271 (481)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccH
Confidence            7999999996655554 5555677888764211  111111111000000000                 0000011113


Q ss_pred             hhhhc------ChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         213 KDIVS------SLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       213 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      ++.++      ++.++...+..+...........+.|.+.++ +|++..+.+.......++..++.++.+++.||++||+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  350 (481)
T TIGR00879       272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP  350 (481)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            33333      2223333333333333334455667777666 7999988888888899999999999999999999886


Q ss_pred             c
Q psy3467         287 K  287 (455)
Q Consensus       287 ~  287 (455)
                      .
T Consensus       351 ~  351 (481)
T TIGR00879       351 L  351 (481)
T ss_pred             H
Confidence            4

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.90  E-value=9.7e-22  Score=189.62  Aligned_cols=261  Identities=13%  Similarity=0.108  Sum_probs=191.8

Q ss_pred             HHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHH---HH
Q psy3467           9 YSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPV---AA   82 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~---~~   82 (455)
                      ...++-+.......+.+|.+++++|+|+++.|++.+.+.+++.+++++.|++.||+|   ..+.+..+..+....   ..
T Consensus        10 ~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~   89 (410)
T TIGR00885        10 SLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA   89 (410)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666778888999999999999999999999999999999999999999   333333333333333   23


Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc------------
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG------------  149 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~------------  149 (455)
                      ..+++ .+++.|++.|+|.+...+....++.+..|+|+|++..++.+...++|..++|.+++.+....            
T Consensus        90 ~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~  169 (410)
T TIGR00885        90 EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKL  169 (410)
T ss_pred             hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhc
Confidence            33566 89999999999999999999999999999999999999999999999999999998875321            


Q ss_pred             -----------cCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcC
Q psy3467         150 -----------FAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSS  218 (455)
Q Consensus       150 -----------~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (455)
                                 ...+||++|++.+.+.++..+... +.++ |+.++  +++++              ++...+.++++|+
T Consensus       170 ~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~-p~~~~--~~~~~--------------~~~~~~~~~~~~~  231 (410)
T TIGR00885       170 SPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKM-PALNH--SDAKQ--------------ISFSASLSRLARI  231 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CCCCc--ccccc--------------ccchhhHHHHHhC
Confidence                       013699999998887766443332 2222 21111  00000              1112234678889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         219 LPFWAILIAHMGQNYGYETLMTELPTFMKQVL-HFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      |+++...+..++.........++++.|.++.. +.+....+...+....+..+|+++++++.||+++|+.
T Consensus       232 ~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~  301 (410)
T TIGR00885       232 RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV  301 (410)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            99888888878877777778888999987632 3333344545566667888999999999999998754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.90  E-value=1.7e-21  Score=187.01  Aligned_cols=256  Identities=13%  Similarity=-0.001  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H--H--HHHHHHHHHHHHHHHh
Q psy3467           9 YSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I--G--MLINSVFAFLVPVAAG   83 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~--~--l~~~~~~~~~~~~~~~   83 (455)
                      ...+..........|.+|...+|+|.|.+++|++.+++.+...++++++|+++||+| .  .  +...+........+..
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~   90 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG   90 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444556667778888899999999999999999999999999999999999 1  1  1111111111223334


Q ss_pred             hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467          84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG  162 (455)
Q Consensus        84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~  162 (455)
                      ++++ .+++.|.++|.+.+...|...++..|+  +|+|++.++......++|.+++|.+++.+.++   .|||..|++..
T Consensus        91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~  165 (382)
T TIGR00902        91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILT  165 (382)
T ss_pred             hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHH
Confidence            5666 888999999999988899999988765  47899999999999999999999999999998   89999998876


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      ....+ .+.. +..+|+++++++.+  ++             ++++..+.++++|+|+++...+..++..........+.
T Consensus       166 ~~~~~-~~~~-~~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~  228 (382)
T TIGR00902       166 AGLAF-MLIG-FLIKPTIPPKDAIP--ED-------------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS  228 (382)
T ss_pred             HHHHH-HHHH-HHcCCCCCCCcccc--cc-------------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55333 2222 23344321111100  00             01122346789999999999888888888888888999


Q ss_pred             hHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         243 PTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       243 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      |.++++ .|.++.+.|.......++.+++....+++.||+++|+.
T Consensus       229 ~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~  272 (382)
T TIGR00902       229 AIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL  272 (382)
T ss_pred             HHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence            999987 89999999999888888889999999999999998854

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=9.7e-22  Score=189.12  Aligned_cols=260  Identities=11%  Similarity=0.045  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhh
Q psy3467          10 SIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSI   86 (455)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~   86 (455)
                      ..++.......+....+...+|+|.++.+.+++.+.+.+++.+++++.|+++||+|   +.+....+..+....+....+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~   90 (393)
T PRK11195         11 AQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH   90 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            33443333333333344456788889999999999999999999999999999999   333333333333333333333


Q ss_pred             HHHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHH
Q psy3467          87 LALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGA  166 (455)
Q Consensus        87 ~~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~  166 (455)
                        .++.|+++|++.+...|...+++.|++|+|+|++++++.+....+|..+||.+++.+.+.    .|+..+.+.+...+
T Consensus        91 --~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~  164 (393)
T PRK11195         91 --PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYL  164 (393)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence              378999999999999999999999999999999999999999999999999999999885    37777776655544


Q ss_pred             HHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3467         167 VWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFM  246 (455)
Q Consensus       167 ~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (455)
                      + ..+..+.+||+++++++.+++++...++           .....+.++++|.+........+.+..........|.+.
T Consensus       165 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (393)
T PRK11195        165 L-AALFNLFIPRLGARRPGQSWNPIALLRD-----------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWA  232 (393)
T ss_pred             H-HHHHHhcCCCCcccccccCCCHHHHHHH-----------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 3444567787654332222111111110           011235677777766555554444555556667778888


Q ss_pred             HHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         247 KQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       247 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ++.+|.++.+.|.......++..++.+..+++.||.++|+.
T Consensus       233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~  273 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV  273 (393)
T ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence            88899999999999999999999999999999988776643

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=2.9e-22  Score=199.84  Aligned_cols=254  Identities=15%  Similarity=0.132  Sum_probs=183.4

Q ss_pred             hhhcccCcccccc---cchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHH
Q psy3467          23 RRVHHKDGSFIWT---TAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFI   95 (455)
Q Consensus        23 ~~~~~~~~~~~~s---~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l   95 (455)
                      +..+.+.+|+|++   +.+.+++.+++.++..+++++.|+++||+|   ..+....+..+......+++++ .+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4567788999998   899999999999999999999999999999   4444555555556666677888 99999999


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhh
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLY  175 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~  175 (455)
                      .|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.++..+      .+||+.|++.+++.++..+. .++
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~~wr~~~~~~~i~~~~~~~~-~~~  262 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI------PDWRWLQLAVSLPTFLFFLL-SWF  262 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHH-HHh
Confidence            99999999999999999999999999999999999999999999998776      56999999998887775444 478


Q ss_pred             cccCCCCCCCC--ChhHHHHHhhhcc---------------cccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHH
Q psy3467         176 CYEEPEAHPNI--AEDERKYIMSSVW---------------GLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETL  238 (455)
Q Consensus       176 ~~e~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (455)
                      +||+|++...+  .++.++..++..+               +++.++++++.++++++|+|.++...+.....++.....
T Consensus       263 ~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  342 (505)
T TIGR00898       263 VPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS  342 (505)
T ss_pred             cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            89988642111  1111111110000               000001112357788999988877766655544444333


Q ss_pred             HhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         239 MTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       239 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ....+.+..+ ++.+..   ......++..+++.++.+++.||+|||+.
T Consensus       343 ~~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~  387 (505)
T TIGR00898       343 YYGLVLDLGN-LGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYT  387 (505)
T ss_pred             HHHHhccccc-cCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            3333333333 454433   22334567778889999999999999854

>KOG0569|consensus

Probab=99.89  E-value=9.2e-22  Score=187.18  Aligned_cols=245  Identities=18%  Similarity=0.251  Sum_probs=186.0

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHH
Q psy3467          38 EQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHAL  110 (455)
Q Consensus        38 ~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~  110 (455)
                      ..+.+.+++.+|.++|++..+.++||+|      ...+...+..+....+...+++ +++.+|++.|+..|......+.+
T Consensus        61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy  140 (485)
T KOG0569|consen   61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY  140 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4688899999999999999999999999      2333333334444556667778 99999999999999999999999


Q ss_pred             HhcccCCCcchhHHHHHHhhHHHHHHHHHHHHH--HhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCC--CC
Q psy3467         111 LAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSG--LLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHP--NI  186 (455)
Q Consensus       111 i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~--~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~--~~  186 (455)
                      +.|..|++.||......+.+..+|..++..++.  .+.+.   ..|++.+....+++++ ..+...++||+|++--  +.
T Consensus       141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~---~~W~~l~~~~~i~~~~-~l~~l~~~PESPk~Ll~~k~  216 (485)
T KOG0569|consen  141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE---DLWPYLLAFPLIPALL-QLALLPFLPESPKYLLIKKG  216 (485)
T ss_pred             HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC---cchHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHcC
Confidence            999999999999999999999999999977763  23344   6799999998888877 6666788999998531  11


Q ss_pred             ChhHHHHHhhh----------------cccccCCCCCCCCChhhhhcChhHH-----HHHHHHHHHHHHHHHHHhhhhHH
Q psy3467         187 AEDERKYIMSS----------------VWGLAGVASSPPVPWKDIVSSLPFW-----AILIAHMGQNYGYETLMTELPTF  245 (455)
Q Consensus       187 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  245 (455)
                      +++++++..+.                ..++++..+++..+++++++++..+     .+.+..+.+..+.+....|...+
T Consensus       217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i  296 (485)
T KOG0569|consen  217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI  296 (485)
T ss_pred             CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence            22222111000                0011112223667788998876543     33444555666666777888888


Q ss_pred             HHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         246 MKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       246 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +++ .|++..++.+.....+....+..+++.++.||.|||+.
T Consensus       297 ~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL  337 (485)
T KOG0569|consen  297 FKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL  337 (485)
T ss_pred             HHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            888 69999999999999999999999999999999999875

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.89  E-value=1.5e-21  Score=191.25  Aligned_cols=255  Identities=16%  Similarity=0.100  Sum_probs=188.2

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHH-HHHHH
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALS-IIRFI   95 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~-~~r~l   95 (455)
                      ++..++++.+++|.+.++.+++.+.+.++..++.++.|+++||+|   ..+....+..+....+..+++. .++ ..|++
T Consensus        38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  117 (455)
T TIGR00892        38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI  117 (455)
T ss_pred             hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            455677888999999999999999999999999999999999999   3444444444555555566666 554 45799


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhh
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLY  175 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~  175 (455)
                      +|++.+...+....++.|+++ ++|+++.++.+.+..+|..++|.+++.+.+.   .|||+.|++.+++.++..+..++.
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHh
Confidence            999998777788888999995 8999999999999999999999999999888   899999999988877655554444


Q ss_pred             cccCCCCCCCCChhHHHHHhhhccccc----CCCC--CCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467         176 CYEEPEAHPNIAEDERKYIMSSVWGLA----GVAS--SPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       176 ~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (455)
                      .++.+++++...+++ +..+.....++    ...+  .+..+ .+++++|.++......++..........++|.|.++ 
T Consensus       194 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-  270 (455)
T TIGR00892       194 RPVGPSQRVSKSKSK-EGLPPDGSTKKLSKKSTAEKINRFLD-FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-  270 (455)
T ss_pred             CCCCccccccccccc-ccCCCCCccccccccchhhhhhhhcc-hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-
Confidence            443221111000000 00000000000    0000  01112 357888888888887777777777778889999987 


Q ss_pred             hcCccccchhhchhHHHHHHHHHHHHHHHHHHh
Q psy3467         250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSM  282 (455)
Q Consensus       250 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  282 (455)
                      .|+++.+.+.+.+..+++..+++++.+++.||.
T Consensus       271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            799999999999999999999999999999974

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=2.3e-21  Score=193.06  Aligned_cols=272  Identities=14%  Similarity=0.136  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      ....+++......+.+.+|.+.+++|+|+.+.+++.+.+.++..+++++.|+++||+|   ..+....+..+........
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  105 (496)
T PRK03893         26 WLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA  105 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566667778888999999999999999999999999999999999999   3333444445555555666


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      +++ .+++.|++.|++.+...+....++.|++|+|+|+++.++...+..+|..++|.+++.+.+.   .+||+.|++..+
T Consensus       106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~w~~~f~~~~~  182 (496)
T PRK03893        106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV---WGWRALFFIGIL  182 (496)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHH
Confidence            777 9999999999999999999999999999999999999999999999999999999999887   899999987544


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHH-HHHhhhcccccCCCCCCCCCh----------hhhh----------------
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDER-KYIMSSVWGLAGVASSPPVPW----------KDIV----------------  216 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~----------------  216 (455)
                      ..++ .+......||+++.+++.+++++ +...+.....    +++....          ...+                
T Consensus       183 ~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (496)
T PRK03893        183 PIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRG----EHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLL  257 (496)
T ss_pred             HHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence            3332 33333445554322111000000 0000000000    0000000          0000                


Q ss_pred             ---------------cChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHH
Q psy3467         217 ---------------SSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADS  281 (455)
Q Consensus       217 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr  281 (455)
                                     +.+.........+...........+.|.|+++++|+++.+.+.+.+...++..++.++.|++.||
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr  337 (496)
T PRK03893        258 CAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW  337 (496)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           00000011111111111111345688999987789999999999999999999999999999999


Q ss_pred             hhhccc
Q psy3467         282 MITSEK  287 (455)
Q Consensus       282 ~g~r~~  287 (455)
                      +++|+.
T Consensus       338 ~g~~~~  343 (496)
T PRK03893        338 LGTRKA  343 (496)
T ss_pred             hcchHH
Confidence            998854

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.89  E-value=6.1e-21  Score=183.22  Aligned_cols=249  Identities=15%  Similarity=0.078  Sum_probs=187.1

Q ss_pred             HHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H----HHHHHHHHHHHHHHHHhhhhH-HH
Q psy3467          16 VINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I----GMLINSVFAFLVPVAAGHSIL-AL   89 (455)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~----~l~~~~~~~~~~~~~~~~~~~-~~   89 (455)
                      .....+.|.+|...+|+|.|.+++|++.+++.++..++++++|+++||+| .    ..................++. .+
T Consensus        18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   97 (382)
T PRK11128         18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLL   97 (382)
T ss_pred             HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            34556667777777889999999999999999999999999999999999 1    111111111112223334556 77


Q ss_pred             HHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHH
Q psy3467          90 SIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWS  169 (455)
Q Consensus        90 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~  169 (455)
                      ++.|++.|++.+...+...++..|+  +++|+++.+......++|..+||.+++.+.++   .|||..|++.++..++..
T Consensus        98 ~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128         98 FVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHH
Confidence            8899999999988999888888876  46788889999999999999999999999998   899999988776544433


Q ss_pred             HHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467         170 VAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       170 i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (455)
                       +..++.||++++++    ++++            .++...++++++|+|+++...+..++..........+.|.|.++ 
T Consensus       173 -~~~~~~~~~~~~~~----~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-  234 (382)
T PRK11128        173 -LGQLLRPTIMPQGE----SRQQ------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-  234 (382)
T ss_pred             -HHHHccCCCCCccc----cccc------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-
Confidence             33334444321110    0000            01123467899999999988877777777777777888899876 


Q ss_pred             hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       250 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .|.++.+.|...+...++..+..++.+++.||+++|+.
T Consensus       235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  272 (382)
T PRK11128        235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL  272 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            89999999999888888888889999999999998854

>TIGR00901 2A0125 AmpG-related permease

Probab=99.88  E-value=6.1e-21  Score=181.65  Aligned_cols=246  Identities=13%  Similarity=0.074  Sum_probs=180.1

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHH-----h--H-HHH-HHHHHHHHHHHHHhh---hhH-
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY-----G--I-GML-INSVFAFLVPVAAGH---SIL-   87 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----G--~-~l~-~~~~~~~~~~~~~~~---~~~-   87 (455)
                      +.+.+|.+.+|+|+|.++.++..+. .+...+ ++++|+++||+     |  . .+. ......+......+.   .+. 
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~   84 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP   84 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence            4455667788899999999999766 455554 99999999998     7  2 222 222222232233333   233 


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC--------CchhHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG--------WPSIFY  159 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~--------wr~~f~  159 (455)
                      .+....++.+.+.+...+...+++.|++|+|+|+++.++...+.++|.++++.+++.+.+.   .+        ||..|+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~---~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP---EFANTGLITLWGYIFF  161 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh---cccccccccccHHHHH
Confidence            5667777888888888899999999999999999999999999999999999999988876   56        999999


Q ss_pred             HhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChh---HHHHHHHHHHHHHHHH
Q psy3467         160 VFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLP---FWAILIAHMGQNYGYE  236 (455)
Q Consensus       160 ~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  236 (455)
                      +.++..++..+..++..||++++++. ++++++              +...++++++++|.   ++...+..++.....+
T Consensus       162 i~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (356)
T TIGR00901       162 WTALLILPGLLVTLFLAKEPQEDASV-PKPLTQ--------------AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDS  226 (356)
T ss_pred             HHHHHHHHHHHHHHHhccCCCccccc-chhHHH--------------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            98887777554445456764332111 111111              01123466677664   6666666666777777


Q ss_pred             HHHhhhhHHHHHHhcCccccchhhchhHH-HHHHHHHHHHHHHHHHhhhccc
Q psy3467         237 TLMTELPTFMKQVLHFNIKENGTLSALPY-LAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       237 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ....+.|.|+++ +|+++.+.+.+....+ ++..++.++++++.||+|+|+.
T Consensus       227 ~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~  277 (356)
T TIGR00901       227 AATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA  277 (356)
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            888999999998 8999999998887766 5678999999999999998753

>PRK12382 putative transporter; Provisional

Probab=99.88  E-value=1.8e-20  Score=180.78  Aligned_cols=251  Identities=14%  Similarity=0.115  Sum_probs=171.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHH---
Q psy3467           5 QHTAYSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFL---   77 (455)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~---   77 (455)
                      ....+..++.........|.+|. +.+|+|.|+++.|++.+++.++..+++++.|+++||+|   ..+.......+.   
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (392)
T PRK12382         18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA   97 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            34445566666666667777775 57889999999999999999999999999999999999   222222222111   


Q ss_pred             HHHHH-----hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccC
Q psy3467          78 VPVAA-----GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFA  151 (455)
Q Consensus        78 ~~~~~-----~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~  151 (455)
                      .....     ..+++ .+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+.   
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---  174 (392)
T PRK12382         98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---  174 (392)
T ss_pred             HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            11111     12455 8999999999999988898999999999999999999999999999999999999999887   


Q ss_pred             CCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHH
Q psy3467         152 GGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQ  231 (455)
Q Consensus       152 ~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
                      .|||+.+.+..+..++.    +.+.++.|+.+++.+  +                  +.+.++.+|  .++...+..++.
T Consensus       175 ~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~------------------~~~~~~~~~--~~~~~~~~~~l~  228 (392)
T PRK12382        175 FGFAALALTTMVLPLLA----WAFNGTVRKVPAHAG--E------------------RPSLWSVVG--LIWKPGLGLALQ  228 (392)
T ss_pred             cChHHHHHHHHHHHHHH----HHHHHhccCCCCCcc--c------------------CchHHHHHH--HHHHhHHHHHHH
Confidence            89998876654443331    122222222111100  0                  001122221  111111122223


Q ss_pred             HHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         232 NYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .........+.|.++++ .+++  +.+.......++..++++..|++.||+++|+.
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  281 (392)
T PRK12382        229 GVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV  281 (392)
T ss_pred             HHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            33444556777888876 4664  34566666778888999999999999998865

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.88  E-value=1.3e-20  Score=181.68  Aligned_cols=237  Identities=18%  Similarity=0.198  Sum_probs=172.0

Q ss_pred             cccchhhHHHHH-----HHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH---------HHHHHHHHH
Q psy3467          34 WTTAEQGYVLSS-----FFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL---------ALSIIRFIQ   96 (455)
Q Consensus        34 ~s~~~~~~~~s~-----~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~---------~~~~~r~l~   96 (455)
                      .++++.+.+.+.     ..++..+++++.|+++||+|   ..+....+..+........+++         .+++.|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            455666655543     33344578999999999999   3444444444555555555543         378899999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc-----ccCCCCchhHHHhhHHHHHHHHH
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY-----GFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~-----~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      |++.+...+....++.|++++|+|++..+..+.+..+|..+++.++..+...     ....+||+.|++.+++.++ ...
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~  185 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLI-GLY  185 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHH-HHH
Confidence            9999999999999999999999999999999999999999999988766420     0016899999887666554 333


Q ss_pred             hhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChh--HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467         172 FLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLP--FWAILIAHMGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       172 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (455)
                      .....||+++.++     +++           ++++...+.++.+++++  ++......++..........+.|.+.+++
T Consensus       186 ~~~~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (394)
T TIGR00883       186 LRRNLEETPVFEK-----AQE-----------KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT  249 (394)
T ss_pred             HHHhcCCChhHHH-----HHh-----------ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334455432211     000           00222345567777655  66666666777777777888999999887


Q ss_pred             hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       250 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +|.++.+.+.......++..+++++.|++.||++||+.
T Consensus       250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  287 (394)
T TIGR00883       250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV  287 (394)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            89999999999888999999999999999999998853

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.88  E-value=1.4e-20  Score=181.54  Aligned_cols=249  Identities=12%  Similarity=0.011  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh
Q psy3467           8 AYSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG   83 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~   83 (455)
                      .++.++.........+.++. +++++|.|..+.|++.+...+...+.+++.|+++||+|   .......+..+.......
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555554 46789999999999999999999999999999999999   444444444445555555


Q ss_pred             hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467          84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG  162 (455)
Q Consensus        84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~  162 (455)
                      .++. .+++.|+++|++.+...+...+++.|++|+|+|++++++.+...++|..+||.+++.+. .   .+||+.|++.+
T Consensus        96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~---~g~~~~f~~~~  171 (400)
T PRK11646         96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q---YDFRLVCATGA  171 (400)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhHHHHHHHHH
Confidence            6667 88999999999998888999999999999999999999999999999999999999998 5   79999999988


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      ...++..++..++.||.++++.   +                 ++...++++.+|+|+++...+..+..+........+.
T Consensus       172 ~~~~~~~i~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (400)
T PRK11646        172 VLFVLAAAFNAWLLPAYKLSTV---R-----------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLML  231 (400)
T ss_pred             HHHHHHHHHHHHhCCccccccc---c-----------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhh
Confidence            8777655555555555321100   0                 0112235677888887766555444444444455678


Q ss_pred             hHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHH
Q psy3467         243 PTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADS  281 (455)
Q Consensus       243 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr  281 (455)
                      |.+.++. +.++.+.+.......+.......+.+++.||
T Consensus       232 p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  269 (400)
T PRK11646        232 PIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEK  269 (400)
T ss_pred             hhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988885 4477788888777776666655555666554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.88  E-value=1.5e-20  Score=181.74  Aligned_cols=249  Identities=14%  Similarity=0.129  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHH---HHH
Q psy3467           7 TAYSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAF---LVP   79 (455)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~---~~~   79 (455)
                      .....++.........+.+|. +++++|.|+++.|++.+++.+++.+++++.|+++||+|   ..+....+..+   ...
T Consensus        20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~   99 (399)
T PRK05122         20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL   99 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            344555555666666667775 56889999999999999999999999999999999999   22222222222   222


Q ss_pred             HHHhhh-----hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC
Q psy3467          80 VAAGHS-----IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG  153 (455)
Q Consensus        80 ~~~~~~-----~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~  153 (455)
                      .....+     ++ .+++.|+++|++.+...+....++.|++|+|+|+++.++.+.+..+|..+++.+++.+.++   .|
T Consensus       100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g  176 (399)
T PRK05122        100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GG  176 (399)
T ss_pred             HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---cc
Confidence            222221     34 7899999999999999999999999999999999999999999999999999999999888   89


Q ss_pred             CchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHH
Q psy3467         154 WPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNY  233 (455)
Q Consensus       154 wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (455)
                      ||+.+++.++..++..+    +.++.|+.+++.  ++                  +.++++.+|+  .+.......+...
T Consensus       177 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~------------------~~~~~~~~~~--~~~~~~~~~~~~~  230 (399)
T PRK05122        177 LAGLGLLIMLLALLGLL----LARPRPAVPPVK--GE------------------RLPFRRVLGR--VWPYGMGLALASI  230 (399)
T ss_pred             HHHHHHHHHHHHHHHHH----HHhcCCCCCCCC--cc------------------chhHHHHHHH--HHHHHHHHHHHHH
Confidence            99998876655443222    122222211110  00                  0112233322  1222222233344


Q ss_pred             HHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         234 GYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       234 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .......+.+.+.++ .|.  .+.+.......++..++++..+++.||+++|+.
T Consensus       231 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  281 (399)
T PRK05122        231 GFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRV  281 (399)
T ss_pred             HHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            455566777888776 465  345666677888899999999999999998753

>KOG3764|consensus

Probab=99.87  E-value=2.3e-21  Score=174.34  Aligned_cols=234  Identities=19%  Similarity=0.115  Sum_probs=200.9

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      .++.+-+++++|++.+.+.+.+.+.+++.|.++||+|   ..+.+..+......+.++.+++ ++++.|.+||+|.+...
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence            3456668889999999999999999999999999999   6666777777777888888999 99999999999999999


Q ss_pred             hhHHHHHhcccCCC-cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCC
Q psy3467         105 PCTHALLAKWIPPT-ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAH  183 (455)
Q Consensus       105 ~~~~~~i~e~~~~~-~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~  183 (455)
                      +...++++|.+|++ ||++++|+...+.++|..+||.++|.+.+.   .|.+.+|++.+++.++...+-++.++.+..++
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~---~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF---AGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh---cCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            99999999999976 589999999999999999999999999999   99999999999999997777766665543332


Q ss_pred             CCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchh
Q psy3467         184 PNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSAL  263 (455)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~  263 (455)
                      +.                    .++..++++++++|.++.........+.....+--.++.+..+.+.-+.-+.|+....
T Consensus       255 ~~--------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp  314 (464)
T KOG3764|consen  255 DS--------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLP  314 (464)
T ss_pred             cc--------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecc
Confidence            11                    3344567899999999888887777777777777888888888777444499999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc
Q psy3467         264 PYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       264 ~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      ..+.+.++..+.|.+.||++..
T Consensus       315 ~~~~y~ig~~lfg~la~k~~~~  336 (464)
T KOG3764|consen  315 ASLSYAIGTNLFGKLADKYPHL  336 (464)
T ss_pred             cccchhccCchHHHHHHhcCch
Confidence            9999999999999999999954

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.87  E-value=2.3e-20  Score=181.49  Aligned_cols=254  Identities=16%  Similarity=0.075  Sum_probs=186.1

Q ss_pred             HHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHH--h
Q psy3467          12 FVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAA--G   83 (455)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~--~   83 (455)
                      ++...........+|...++++.++.+.|++.+.+.++..+++++.|+++||+|      ......++.........  .
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~  106 (417)
T PRK10489         27 FISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence            344444455556666677778889999999999999999999999999999999      22222222222221111  2


Q ss_pred             hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467          84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG  162 (455)
Q Consensus        84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~  162 (455)
                      .+++ .+++.|+++|++.+...+...+++.|+.|+++|+++.++.+...++|..+||.+++.+.+.   .+||+.|++.+
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~  183 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAA  183 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHH
Confidence            3455 8889999999998888888999999999999999999999999999999999999999887   79999999877


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      +..++.. +..+.+||++++++..++ +.              ++..+.++..+++|.++...+..++... ......+.
T Consensus       184 ~~~~~~~-~~~~~l~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  246 (417)
T PRK10489        184 AGTFITL-LPLLRLPALPPPPQPREH-PL--------------RSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLY  246 (417)
T ss_pred             HHHHHHH-HHHHhCCCCCCCCccccc-ch--------------HHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhh
Confidence            7666543 344556665432211100 00              0111234566778777665554444332 34567788


Q ss_pred             hHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         243 PTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       243 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      |.+.++.+|.++.+.+++.+...++..++.++.+++.||.+++
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~  289 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG  289 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence            9999988899999999999999999999999999999885544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.87  E-value=4.7e-20  Score=177.72  Aligned_cols=254  Identities=14%  Similarity=0.100  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHH-HHHHhhhhhHHHHhHHh--HH-HHH-HHHHHHHHHHHH
Q psy3467           9 YSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFY-GYVLTQIPFGILAKKYG--IG-MLI-NSVFAFLVPVAA   82 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~G--~~-l~~-~~~~~~~~~~~~   82 (455)
                      ...++.+.......|.++. +.+|+|.|+++.|++.+...+ +..++.++.+. +||+|  .. +.. .....+......
T Consensus        22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~  100 (393)
T PRK15011         22 IVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA  100 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence            3455555555555565555 478899999999999876655 55555555555 99999  22 222 233334444455


Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcc--hhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHH
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTER--SRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFY  159 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~  159 (455)
                      +++++ .+++.+.+.|...+...|....+..|+.++++|  +...+..+.+.++|..++|.+++.+.++   .|||..|+
T Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~  177 (393)
T PRK15011        101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYL  177 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHH
Confidence            56666 555555444444456788888999998876655  3445788899999999999999999988   89999999


Q ss_pred             HhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHH
Q psy3467         160 VFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLM  239 (455)
Q Consensus       160 ~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (455)
                      +.++..++..+..+.++||.+++++..++ +.              +..    ++  +++..+.........+.......
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~  236 (393)
T PRK15011        178 SAAVAFIVCGVMVWLFLPSMRKELPLATG-TL--------------EAP----RR--NRRDTLLLFVICTLMWGTNSLYI  236 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCccCCCCccccc-cc--------------ccc----cc--ccccHHHHHHHHHHHHHHHHHHH
Confidence            99888887777777778886543321100 00              000    00  01112222233333444455556


Q ss_pred             hhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         240 TELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       240 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+.|.|+++++|+++.+.+.+.+...++..++.++.|++.||+++|+.
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~  284 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL  284 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            789999988899999999988877778888899999999999999853

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.87  E-value=3.9e-20  Score=175.44  Aligned_cols=234  Identities=27%  Similarity=0.458  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      ....+..........+..+...+++|.++++.+++.+.+.++..+++++.|+++||+|   ..........+........
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~   84 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA   84 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence            3445556666666667777788888999999999999999999999999999999999   3334444444444445555


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      +++ .+++.|++.|++.+...+...+++.|++|+|+|++.+++.+....+|..++|.+++.+.+.   .+||+.+++.++
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~  161 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFLILAI  161 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHH
Confidence            667 9999999999999999999999999999999999999999999999999999999999988   789999999888


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhh
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELP  243 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
                      +.++..+...+. +                                         |.++...+..++..........+.|
T Consensus       162 ~~~~~~~~~~~~-~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  199 (352)
T cd06174         162 LGLLLALLLLFL-L-----------------------------------------RLLLLLALAFFLLSFGYYGLLTYLP  199 (352)
T ss_pred             HHHHHHHHHHHH-H-----------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            877755554333 2                                         4567777777888888888899999


Q ss_pred             HHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         244 TFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       244 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      .+.++.+|.+..+.+.......++..++.++.+++.||+++|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  242 (352)
T cd06174         200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR  242 (352)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999877999999999999999999999999999999999985

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.87  E-value=7.2e-20  Score=177.67  Aligned_cols=257  Identities=14%  Similarity=0.144  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccch-----hhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAE-----QGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP   79 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~-----~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~   79 (455)
                      ....++.........+.+|.+.+|+|.+..+     .+++.+++.++..+++++.|+++||+|   ..+.......+...
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   99 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV   99 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence            3444555555556667778788888888655     488999999999999999999999999   33333333344444


Q ss_pred             HHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhH
Q psy3467          80 VAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIF  158 (455)
Q Consensus        80 ~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f  158 (455)
                      .....+++ .+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..++|.+++.+.+.   .+||+.|
T Consensus       100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~  175 (408)
T PRK09874        100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVF  175 (408)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHH
Confidence            44555667 89999999999865 5678888999999999999999999999999999999999999887   8999999


Q ss_pred             HHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHH-HHHHHHHHHHHHH
Q psy3467         159 YVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAI-LIAHMGQNYGYET  237 (455)
Q Consensus       159 ~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  237 (455)
                      ++.+++.++..+...++.||+++..++.++.+.                  .+..+.+++++++.. .............
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T PRK09874        176 FITASVLFLCFLVTLFCIRENFQPVSKKEMLHM------------------REVVTSLKNPKLVLSLFVTTLIIQVATGS  237 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcccccchhhhHH------------------HHHHHhCcCCchHHHHHHHHHHHHHHHHH
Confidence            999888777666667777775432211100000                  011334555555432 2223333344444


Q ss_pred             HHhhhhHHHHHHhcCcccc----chhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         238 LMTELPTFMKQVLHFNIKE----NGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       238 ~~~~~~~~~~~~~g~s~~~----~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ...+.+.|.++..+ +..+    .+.+.....++..++.+..|++.||+++|+.
T Consensus       238 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~  290 (408)
T PRK09874        238 IAPILTLYVRELAG-NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI  290 (408)
T ss_pred             HHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            55677778777433 3222    3455556677788888899999999998865

>PRK10054 putative transporter; Provisional

Probab=99.87  E-value=1.7e-20  Score=180.65  Aligned_cols=256  Identities=12%  Similarity=0.063  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           9 YSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      ...++.........+.++. +++++|+|.++.|++.+.+.++..+++++.|+++||+|   ..+.......+......+.
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555543 45689999999999999999999999999999999999   3333333344444455566


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      +++ .+++.|++.|.+.+...+....+..|..|+++|++++++.....++|..++|.+++.+.+    .+||..|++.++
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~  169 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAI  169 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHH
Confidence            667 777889999888777788899999999999999999999999999999999999998875    589999998887


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhh
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELP  243 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
                      ..++..++..+++||+++++++  ++++                 ..+.++.+|+|+++...+..++..........+.+
T Consensus       170 ~~~i~~i~~~~~~~~~~~~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSEKAIAT--ETGS-----------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCIS  230 (395)
T ss_pred             HHHHHHHHHHHHHhcccccccc--chhh-----------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHH
Confidence            7777555555556654322110  0000                 01125678888888777777766666655556667


Q ss_pred             HHHHHH--hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         244 TFMKQV--LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       244 ~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+..+.  .+.+....+.............+...|++.||.++|+.
T Consensus       231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  276 (395)
T PRK10054        231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL  276 (395)
T ss_pred             HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH
Confidence            776542  34455566666666666666777888899999887753

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.87  E-value=7.4e-20  Score=180.64  Aligned_cols=250  Identities=16%  Similarity=0.191  Sum_probs=181.9

Q ss_pred             HHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHH-----h---HHHHHHHHHH-HHHHHHHhh---
Q psy3467          17 INTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY-----G---IGMLINSVFA-FLVPVAAGH---   84 (455)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----G---~~l~~~~~~~-~~~~~~~~~---   84 (455)
                      ......+.+|...++.|.|.++++.. +.....+ ++++++|+++||+     |   ..+....+.. +.....++.   
T Consensus        27 ~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~  104 (491)
T PRK11010         27 PLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPG  104 (491)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCc
Confidence            33444455666677788999999987 4444444 6899999999999     8   2233333322 232333332   


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh-cccCCCCchhHHHhh
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE-YGFAGGWPSIFYVFG  162 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~-~~~~~~wr~~f~~~~  162 (455)
                      ++. .+.+.|++.|++.+...+...++..|++|+|||+++.++...+..+|..+++.++..+.+ .   .|||..|++.+
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~---~GWr~~f~i~a  181 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY---LGWQGMYWLMA  181 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHH
Confidence            345 788899999999999999999999999999999999999999999999999999999988 5   69999999998


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      ++.++..+.. ++.||+++.++. +++.+              ++...++++.++++..+...+..++..........+.
T Consensus       182 ~l~ll~~l~~-~~~~e~~~~~~~-~~~~~--------------~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~  245 (491)
T PRK11010        182 ALLIPCIIAT-LLAPEPTDTIPV-PKTLE--------------QAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLT  245 (491)
T ss_pred             HHHHHHHHHH-HhcCCCcccccc-ccchh--------------hhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777654443 346775432111 00000              0012245677777777666665566666666667788


Q ss_pred             hHHHHHHhcCccccchhhch-hHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         243 PTFMKQVLHFNIKENGTLSA-LPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       243 ~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.++.+++|+|+.+.+.... ...++.+++.+++|++.||+++|+.
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~  291 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA  291 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            88887778999999999874 4567899999999999999998753

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.86  E-value=2.8e-19  Score=172.90  Aligned_cols=254  Identities=14%  Similarity=0.058  Sum_probs=181.6

Q ss_pred             HHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHH-----h--H--HHHHHHHHHHHHHHHHhh
Q psy3467          14 SRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY-----G--I--GMLINSVFAFLVPVAAGH   84 (455)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----G--~--~l~~~~~~~~~~~~~~~~   84 (455)
                      .+.......+.+|..-+|.|.|.+++|++..+...  .+.++++|+++||+     |  .  .........+......+.
T Consensus        11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~   88 (402)
T PRK11902         11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC   88 (402)
T ss_pred             HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence            33344555566777777889999999999777775  69999999999999     7  2  222222222222222332


Q ss_pred             ---hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHH
Q psy3467          85 ---SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYV  160 (455)
Q Consensus        85 ---~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~  160 (455)
                         ++. .+.+..++.++..+...+...+++.|+.|+|||+++.++...+..+|..+++.++..+.+..  .|||..|++
T Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i  166 (402)
T PRK11902         89 PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLL  166 (402)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHH
Confidence               234 67777778888888888999999999999999999999999999999999999999888740  499999999


Q ss_pred             hhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHh
Q psy3467         161 FGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMT  240 (455)
Q Consensus       161 ~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (455)
                      .+++.++..+ ..++.||+++++++. ++.+              ++...++++++|||.++...+..++..........
T Consensus       167 ~a~~~l~~~l-~~~~~~e~~~~~~~~-~~~~--------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~  230 (402)
T PRK11902        167 MAGLMLAGAL-TTLWAPEPEVPARPP-RSLG--------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGS  230 (402)
T ss_pred             HHHHHHHHHH-HHHhcCCCccccccc-chhH--------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHH
Confidence            8887766444 345667654332211 1100              01122457788999888777666665554443344


Q ss_pred             hhhHHHHHHhcCccccchhhchhHH-HHHHHHHHHHHHHHHHhhhccc
Q psy3467         241 ELPTFMKQVLHFNIKENGTLSALPY-LAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       241 ~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.+.++.+++|+++++.+++....+ .+..++.++++++.||+++|+.
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~  278 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS  278 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5556676778999999999876654 4688999999999999998753

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.84  E-value=1.9e-19  Score=196.34  Aligned_cols=244  Identities=17%  Similarity=0.132  Sum_probs=184.0

Q ss_pred             ccCccccccc-chhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHH----HHHHHHHHHHHHHHhhhhH-HHHHHHHHHhh
Q psy3467          27 HKDGSFIWTT-AEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGM----LINSVFAFLVPVAAGHSIL-ALSIIRFIQGL   98 (455)
Q Consensus        27 ~~~~~~~~s~-~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l----~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~   98 (455)
                      .+.++.+.+. ...++..+++.+.+.++++++|.++||+|  ..+    ....+.......+...+++ .++++|+++|+
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi  120 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI  120 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444443332 45788899999999999999999999999  211    1222222222223333566 99999999999


Q ss_pred             cccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467          99 GEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus        99 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      +.+...|+..+++.|++++++|++++++.+.+.++|.++||.+++++.+.   .+|++.|...++..++ .++..+++|+
T Consensus       121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~  196 (1140)
T PRK06814        121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVL-GWLASLFIPK  196 (1140)
T ss_pred             HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH-HHHHHhhCCC
Confidence            99999999999999999999999999999999999999999999999998   8999999444444444 4445556666


Q ss_pred             CCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccch
Q psy3467         179 EPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENG  258 (455)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g  258 (455)
                      +++.++..+.+.. ..           ++....++.+.+++.++...+..+..+........++|.|+++.+|.++.+.|
T Consensus       197 ~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g  264 (1140)
T PRK06814        197 TGNAAPDLKIDRN-II-----------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVAT  264 (1140)
T ss_pred             CCCCCCCCeeccc-hH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHH
Confidence            5433221111000 00           00112356778888998888888888777778888999999998999999999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         259 TLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      ++.+...++.+++.++.|++.||..+++
T Consensus       265 ~~~~~~~~g~~ig~~~~g~l~~~~~~~~  292 (1140)
T PRK06814        265 LFLAVFSVGVAVGSFLASKLSEGRITLL  292 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceeee
Confidence            9999999999999999999998776654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.84  E-value=2.5e-18  Score=153.71  Aligned_cols=245  Identities=15%  Similarity=0.159  Sum_probs=201.1

Q ss_pred             HHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467          16 VINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSILALSII   92 (455)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~~~~~~   92 (455)
                      ...+.+.|.++++++|+|+|.+..|+++++..+...+.+++..+++.|+|   .......+.+++..+-...+.+.++.+
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~g  105 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLG  105 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999   333333344444444443333388999


Q ss_pred             HHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      -.+.|.|.+......++.+.+.+| |+-+..+++|+....+|..+++.++-.+.++.  .+||....+.+.++++..+.+
T Consensus       106 t~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         106 TLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             HHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997 78899999999999999999999999998872  379999999999888855554


Q ss_pred             hhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcC
Q psy3467         173 LLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHF  252 (455)
Q Consensus       173 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  252 (455)
                      +   |...+++   .++.               +.+..+...++|+|.-|.+.+.+.+++..+|....|+|.++.| .|+
T Consensus       183 l---Pq~~r~~---~~~~---------------~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~  240 (395)
T COG2807         183 L---PQALREQ---AASI---------------ATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGL  240 (395)
T ss_pred             h---hhccccc---cccc---------------ccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCC
Confidence            3   3221111   0000               1222333568999999999999999999999999999999999 699


Q ss_pred             ccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         253 NIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       253 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      |+.++|.+.+...+...+..+....+.+|...+
T Consensus       241 sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~  273 (395)
T COG2807         241 SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ  273 (395)
T ss_pred             CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999985544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.83  E-value=7.3e-19  Score=192.47  Aligned_cols=242  Identities=17%  Similarity=0.152  Sum_probs=178.2

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHH---HHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHH
Q psy3467          36 TAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLIN---SVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTH  108 (455)
Q Consensus        36 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~---~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~  108 (455)
                      ....+++.+++.+++.++++++|+++||+|   +.+...   .+..+...++...+++ .+++.|+++|++.+...+...
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence            345799999999999999999999999999   222222   2233333344444566 999999999999999999999


Q ss_pred             HHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhccc------CCCCchhHHHhhHHHHHHHHHhhhhcccCCCC
Q psy3467         109 ALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF------AGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEA  182 (455)
Q Consensus       109 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~------~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~  182 (455)
                      +++.|++|+++|++++++.+.+..+|.++|+.+++++.+...      ..+|++.+.+..+...+..++..+.+||.++.
T Consensus       126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (1146)
T PRK08633        126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA  205 (1146)
T ss_pred             hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence            999999999999999999999999999999999999876300      02455555444444444344455566776654


Q ss_pred             CCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccc-cchhhc
Q psy3467         183 HPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK-ENGTLS  261 (455)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~  261 (455)
                      ++...+.++..          ..++....++.+++++.++...+..++.+........++|.++++.+|++.. +.+++.
T Consensus       206 ~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~  275 (1146)
T PRK08633        206 APEVFDKKKYL----------FPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLL  275 (1146)
T ss_pred             Ccccccccccc----------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHH
Confidence            32211000000          0001122356678888888777777777777777788899999988999998 899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         262 ALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       262 ~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +...++.+++.++.+++.||+++++.
T Consensus       276 ~~~~ig~~~g~~~~g~l~~r~~~~~~  301 (1146)
T PRK08633        276 AASAIGIGIGSLLAGRLSGRHIELGL  301 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceEccc
Confidence            99999999999999999999988754

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.83  E-value=1.3e-18  Score=167.97  Aligned_cols=256  Identities=13%  Similarity=0.100  Sum_probs=174.0

Q ss_pred             HHHHHHhhhhhccc-CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH---HHHh----
Q psy3467          15 RVINTKLTRRVHHK-DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP---VAAG----   83 (455)
Q Consensus        15 ~~~~~~l~~~~~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~---~~~~----   83 (455)
                      ........|.++.. .+++|.++++.+++.+++.++..+++++.|+++||+|   ..+.......+...   ....    
T Consensus        15 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (396)
T TIGR00882        15 FFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLL   94 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            33333344455443 4568999999999999999999999999999999999   22211111111111   1111    


Q ss_pred             -hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh
Q psy3467          84 -HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF  161 (455)
Q Consensus        84 -~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~  161 (455)
                       .+.. ..++.|++.|++.+...+....+..|..  +++++..+......++|..++|.+++.+.+    .+||..|++.
T Consensus        95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~  168 (396)
T TIGR00882        95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLG  168 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHH
Confidence             1223 4567789999999888888888887754  344567778888889999999999998765    6999999998


Q ss_pred             hHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhh
Q psy3467         162 GLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTE  241 (455)
Q Consensus       162 ~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (455)
                      +.+.++..++.+...||+|++++.     ++. .+    + ++++++..+.++++|+|+++...+..+...........+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~----~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  237 (396)
T TIGR00882       169 SGFALILMLLLMFAKPKAPSSATV-----ANA-LG----A-NASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQ  237 (396)
T ss_pred             HHHHHHHHHHHHHhCCCCchhhhh-----hcc-cc----c-ccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            888877555554444443321110     000 00    0 011222345678899998877766666655555556667


Q ss_pred             hhHHHHHHh---cCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         242 LPTFMKQVL---HFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       242 ~~~~~~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+.|+++.+   +.+..+.|...+...+...++.+..+++.||+++|+.
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~  286 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA  286 (396)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            888887754   4455567778888888888999999999999999865

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=5.5e-18  Score=153.87  Aligned_cols=259  Identities=17%  Similarity=0.167  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHHhh
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~~~   84 (455)
                      .++-++++....+.+|++++.++++..|.+++...++.++.+.+++.|.+.+|+|      ..+...++++....-++..
T Consensus        22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~  101 (422)
T COG0738          22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS  101 (422)
T ss_pred             HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4455666666777888899999999999999999999999999999999999999      4444444444444444566


Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc--------------
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG--------------  149 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~--------------  149 (455)
                      .++ .++++-|+.|.|.+...+.++.++....++++..+.+++.+...++|..++|.+++.+...+              
T Consensus       102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~  181 (422)
T COG0738         102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIK  181 (422)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHH
Confidence            677 99999999999999999999999999999999999999999999999999999999876620              


Q ss_pred             --cCCCCchhHHHhhHHHHHHHHHhhhh-cccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHH
Q psy3467         150 --FAGGWPSIFYVFGLVGAVWSVAFLLY-CYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILI  226 (455)
Q Consensus       150 --~~~~wr~~f~~~~~~~~~~~i~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (455)
                        ....||++|...+....+..+..... .|+.++..++   +.               +++.....+++|+|+++.-.+
T Consensus       182 ~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~---~~---------------~~~~~~~~~l~~~~~~~~gvl  243 (422)
T COG0738         182 GADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPS---LG---------------ASGSAGLSSLFQNKHLRLGVL  243 (422)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccc---cc---------------ccccchHHHHHhChHHHHHHH
Confidence              01248888888777666544433221 1222111110   00               111114589999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         227 AHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ..+++-.......++++.|+.+..|.+..++....+.+..+..+|++++.++.+|+..+|.
T Consensus       244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~  304 (422)
T COG0738         244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKY  304 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            9999999999999999999999778999999999999999999999999999999988754

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.82  E-value=9.8e-19  Score=170.21  Aligned_cols=262  Identities=13%  Similarity=0.111  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHhhhhhccc-CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH---HH
Q psy3467           9 YSIFVSRVINTKLTRRVHHK-DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP---VA   81 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~---~~   81 (455)
                      ...++.........+.++.. .+++|+|..+.|++.+++.++..+++++.|+++||+|   ..+....+......   ..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444555444 4569999999999999999999999999999999999   22221122111111   11


Q ss_pred             Hhhh-----hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCc
Q psy3467          82 AGHS-----IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWP  155 (455)
Q Consensus        82 ~~~~-----~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr  155 (455)
                      ...+     .. ...+.+++.|.+.....+....+..| . .++|++.++......++|..++|.+++.+.+    .+||
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~  170 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCch
Confidence            1111     11 22334444454444434444343322 2 3567888899999999999999999998876    5899


Q ss_pred             hhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHH
Q psy3467         156 SIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGY  235 (455)
Q Consensus       156 ~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (455)
                      +.|++.+++.++..++.++..+|++++++..+++++           ++++.+..+.++.+|+|+++.+.+..+......
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~  239 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-----------NASAVSLKDALALLKLPKFWFLVLYVIGVACFY  239 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccccchhhhccchhc-----------ccccccHHHHHHHccCCCeEeehHHHHHHHHHH
Confidence            999998887777555555544443322111000000           000111223456788888766655554544444


Q ss_pred             HHHHhhhhHHHHHHh---cCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         236 ETLMTELPTFMKQVL---HFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       236 ~~~~~~~~~~~~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .....+.|.++.+.+   +.+..+.+.+.+...++..++.++.|++.||+++|+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  294 (420)
T PRK09528        240 DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA  294 (420)
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence            445556777766543   4555677888888889999999999999999999865

>KOG0254|consensus

Probab=99.81  E-value=9.9e-19  Score=173.99  Aligned_cols=262  Identities=16%  Similarity=0.188  Sum_probs=190.0

Q ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHh
Q psy3467          37 AEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLA  112 (455)
Q Consensus        37 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~  112 (455)
                      .+.+|+.+.+.++..+++++.|+++|++|   ..++......++....+.+++. +++++|+++|+|.|......+.+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            35599999999999999999999999999   6666666777777888888888 9999999999999999999999999


Q ss_pred             cccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCC-ChhHH
Q psy3467         113 KWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNI-AEDER  191 (455)
Q Consensus       113 e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~-~~~~~  191 (455)
                      |..|++.||...+..+....+|..++..++....+. . .+||..+.+..+++++..+. .+++||+|++.-+. +.++.
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a  245 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEA  245 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHH
Confidence            999999999999999999999999996666655432 1 38999999988888886666 89999999753221 11111


Q ss_pred             HHHhhhccc--cc----------------CCCCCCCCChhhhhc----ChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467         192 KYIMSSVWG--LA----------------GVASSPPVPWKDIVS----SLPFWAILIAHMGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       192 ~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (455)
                      +...+....  ++                ....+.+..++++++    ++.+....+..+.+..+......|.+.+++. 
T Consensus       246 ~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-  324 (513)
T KOG0254|consen  246 KRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-  324 (513)
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-
Confidence            111111110  00                000111112344443    2334556666677777777778888988887 


Q ss_pred             hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy3467         250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSS  313 (455)
Q Consensus       250 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (455)
                      .|.+... .......++...++..++..+.||+|||+.          ...+.....++.++++
T Consensus       325 ~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l----------ll~s~~~m~~~~~~~~  377 (513)
T KOG0254|consen  325 AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL----------LLFGAAGMSICLVILA  377 (513)
T ss_pred             cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH----------HHHhHHHHHHHHHHHH
Confidence            4665433 444556778888888899999999999865          5555555555555544

>KOG2504|consensus

Probab=99.81  E-value=2.2e-18  Score=168.21  Aligned_cols=269  Identities=17%  Similarity=0.182  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL   87 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~   87 (455)
                      +.....+........+.++++++.+.++++|+.++......+..++.+.+.||+|   +.+.+..+...+..++.++++.
T Consensus        55 ~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i  134 (509)
T KOG2504|consen   55 NLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSL  134 (509)
T ss_pred             HHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3333333444556677888999999999999999999999999999999999999   7777777778888888888887


Q ss_pred             --HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH
Q psy3467          88 --ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus        88 --~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                        .++..-++.|+|.+..+.....++..+++ |+|+.+.|+...+..+|..+-|.+...+.+.   .|||+.+++.+.+.
T Consensus       135 ~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~---~G~r~~~l~~~~~~  210 (509)
T KOG2504|consen  135 WQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK---YGWRGALLIFGGIS  210 (509)
T ss_pred             HHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH---hCcHHHHHHHHHHH
Confidence              66667899999999999999999998884 9999999999999999999999999999998   99999999999988


Q ss_pred             HHHHHHhhhhcccCCCCCCCCChhHHH----------------H-------Hh-------hhcccccCCC--CCCCCCh-
Q psy3467         166 AVWSVAFLLYCYEEPEAHPNIAEDERK----------------Y-------IM-------SSVWGLAGVA--SSPPVPW-  212 (455)
Q Consensus       166 ~~~~i~~~~~~~e~~~~~~~~~~~~~~----------------~-------~~-------~~~~~~~~~~--~~~~~~~-  212 (455)
                      +-..+......|.+++.++. .+++.+                .       ..       ...+.+++..  ..+.... 
T Consensus       211 l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (509)
T KOG2504|consen  211 LNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSM  289 (509)
T ss_pred             HHHHHHHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhh
Confidence            77666666666644333211 000000                0       00       0000000000  1111111 


Q ss_pred             --hhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         213 --KDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                        .+++|+|.++.+.+...+...++.....++|.+.++ .+++..+.+.+.+..++..+++.+..|++.|+...+
T Consensus       290 ~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~  363 (509)
T KOG2504|consen  290 LDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR  363 (509)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc
Confidence              578999999999999999999999999999999996 899999999999999999999999999999998854

>KOG2532|consensus

Probab=99.80  E-value=1.2e-20  Score=181.64  Aligned_cols=182  Identities=25%  Similarity=0.437  Sum_probs=131.3

Q ss_pred             HHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc----------------------------------------
Q psy3467         248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK----------------------------------------  287 (455)
Q Consensus       248 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~----------------------------------------  287 (455)
                      +++++|+.|.+++.+.+.+|++++++++|++.||+|.|++                                        
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            3588999999999999999999999999999999999986                                        


Q ss_pred             ----------ccccchHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhHHhcCCCCceEEEEEecCcccccccCCC
Q psy3467         288 ----------FSHTSTRKIINAFLYQVLSFGMIVSSA--------LMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDN  349 (455)
Q Consensus       288 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (455)
                                +.+..||.....+...+...|.++...        ..+|...||+.+..+.+|..+|      .....+.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w------~~~~~d~  219 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILW------FLFYSDS  219 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHH------HHHhcCC
Confidence                      333556666555544444333332221        1469999999999999997777      2222222


Q ss_pred             CCccccccccCCCcccccccccccccccccceeeEEEEeccCCCCCCCCCcHHHHHhhHHHHHHHHHHhcchhhHHHHHh
Q psy3467         350 NSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMT  429 (455)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (455)
                       +.++...-.+|..++..+.                   .+...+++.++||+++++++++|++.+++|+++|.++++++
T Consensus       220 -P~~h~~is~~El~~I~~~k-------------------~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~  279 (466)
T KOG2532|consen  220 -PSKHPNISEKELKYIEKGK-------------------SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLT  279 (466)
T ss_pred             -cccCCCCCHHHHHHHHhcc-------------------cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111111111111111100                   01111122589999999999999999999999999999999


Q ss_pred             hhhHHHHHhhccccccceeeecccCC
Q psy3467         430 ELPTFMKQVLHFNIKEHGSVRVTSSL  455 (455)
Q Consensus       430 w~P~y~~~~~~~~~~~~g~~~~~p~~  455 (455)
                      |+|+||+|++|+|++++|+++++|++
T Consensus       280 y~PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  280 YLPTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             HhhHHHHHHhCCChhhhhHHHHHHHH
Confidence            99999999999999999999999974

>TIGR00889 2A0110 nucleoside transporter

Probab=99.79  E-value=1.8e-17  Score=160.68  Aligned_cols=240  Identities=15%  Similarity=0.079  Sum_probs=162.5

Q ss_pred             hhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHH
Q psy3467          22 TRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQ   96 (455)
Q Consensus        22 ~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~   96 (455)
                      ++..+.+.+++|++.++.|++.+++.++..++++++|.++||+|    .......+..+......+.+++ .+.+.|++.
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  102 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN  102 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34444556789999999999999999999999999999999996    2233333333444445555666 888999999


Q ss_pred             hhcccCchhhHHHHHh--------cccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHH
Q psy3467          97 GLGEGPIVPCTHALLA--------KWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVW  168 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~  168 (455)
                      |++.+...+...+...        |......|.+..|      .+|..++|.+++.+...   .+|+. |++.++..++.
T Consensus       103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~~-f~~~~~~~~~~  172 (418)
T TIGR00889       103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNIQ-LYITAGSSALL  172 (418)
T ss_pred             HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhHH-HHHHHHHHHHH
Confidence            9988777776665532        2233334555554      46888889988877332   34553 55555555554


Q ss_pred             HHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy3467         169 SVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQ  248 (455)
Q Consensus       169 ~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (455)
                      .+ ..+++||+|+.+++.+++.+              +....+.++++|+|+++.+.+..++..........+.+.+.++
T Consensus       173 ~~-~~~~~~e~~~~~~~~~~~~~--------------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (418)
T TIGR00889       173 GV-FALTLPDIPVAKSTAKMSIK--------------VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE  237 (418)
T ss_pred             HH-HHhcCCCCCCCccccccCHH--------------HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence            44 35577887543221111100              0111233567888888777777777666555666777888876


Q ss_pred             HhcCcc--------ccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         249 VLHFNI--------KENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       249 ~~g~s~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                       .|.++        .+.+...+...+..+++.++.+++.||+|+|+.
T Consensus       238 -~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~  283 (418)
T TIGR00889       238 -FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV  283 (418)
T ss_pred             -hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence             56554        455888888889999999999999999999865

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.79  E-value=4.8e-17  Score=160.01  Aligned_cols=274  Identities=15%  Similarity=0.106  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHhhhhhc-ccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh---HHHHHHHHHHHHHHHHH
Q psy3467           8 AYSIFVSRVINTKLTRRVH-HKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG---IGMLINSVFAFLVPVAA   82 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G---~~l~~~~~~~~~~~~~~   82 (455)
                      .+..+..+.......+.++ -+++++|.++++.+++.+.+.....+..+++|+++|| +|   ..+.+..+..++...+.
T Consensus        20 ~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~   99 (489)
T PRK10207         20 FFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG   99 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            3444444444433333332 2356799999999999999999999999999999999 99   55555556666666666


Q ss_pred             hhhhH--HHHHHHHHHhhcccCchhhHHHHHhcccCCC--cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhH
Q psy3467          83 GHSIL--ALSIIRFIQGLGEGPIVPCTHALLAKWIPPT--ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIF  158 (455)
Q Consensus        83 ~~~~~--~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f  158 (455)
                      .+.+.  .+.++|.++|+|.|...|...++++|.+|++  +|++++++++.+.++|..+||.+++++.++   .|||+.|
T Consensus       100 ~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~---~gw~~~F  176 (489)
T PRK10207        100 MSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK---FGYSVTY  176 (489)
T ss_pred             HhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh---hChHHHH
Confidence            55543  4568999999999999999999999999877  457899999999999999999999999998   8999999


Q ss_pred             HHhhHHHHHHHHHhhhhcccCCCCC---C-CCChhHHHHHh------------hhcccccCC-----------------C
Q psy3467         159 YVFGLVGAVWSVAFLLYCYEEPEAH---P-NIAEDERKYIM------------SSVWGLAGV-----------------A  205 (455)
Q Consensus       159 ~~~~~~~~~~~i~~~~~~~e~~~~~---~-~~~~~~~~~~~------------~~~~~~~~~-----------------~  205 (455)
                      ++.++ +.+..++.+.+.++..++.   + ..+.+.+....            ....+....                 .
T Consensus       177 ~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~  255 (489)
T PRK10207        177 NLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFR  255 (489)
T ss_pred             HHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            98654 3333444444444322111   1 11111111000            000000000                 0


Q ss_pred             CCCCCChhhhhcChhHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHhcCccc----cchhhchhHHHHHHHHHHHHHHHH
Q psy3467         206 SSPPVPWKDIVSSLPFWAILI--AHMGQNYGYETLMTELPTFMKQVLHFNIK----ENGTLSALPYLAMWIFSMFASFIA  279 (455)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g~l~  279 (455)
                      ++.+.  .+.+|+|.+....+  ...+.+..+.......+.+.++..+.+..    ....+.+...+...+..++.+++.
T Consensus       256 ~~~~~--~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~  333 (489)
T PRK10207        256 EAFKL--DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY  333 (489)
T ss_pred             HHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH
Confidence            00001  14556655444332  24445555556667778888753333210    112233334456667778889999


Q ss_pred             HHhhhccc
Q psy3467         280 DSMITSEK  287 (455)
Q Consensus       280 dr~g~r~~  287 (455)
                      ||+++|+.
T Consensus       334 ~rl~~r~~  341 (489)
T PRK10207        334 THLGSKGK  341 (489)
T ss_pred             HHHhhCCC
Confidence            99998863

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.79  E-value=6.9e-17  Score=158.82  Aligned_cols=300  Identities=11%  Similarity=0.014  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhccc-Ccc--cccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh---HHHHHHHHHHHHHH
Q psy3467           7 TAYSIFVSRVINTKLTRRVHHK-DGS--FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG---IGMLINSVFAFLVP   79 (455)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~-~~~--~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G---~~l~~~~~~~~~~~   79 (455)
                      ..+..+..+.....+.+.++.. .++  +|++..+.+++.+.+.++..++++++|+++|| +|   ..+.+..+..+...
T Consensus        15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~   94 (475)
T TIGR00924        15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF   94 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            3444455555544445555544 334  89999999999999999999999999999999 79   44444444444444


Q ss_pred             HHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCc---chhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCc
Q psy3467          80 VAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTE---RSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWP  155 (455)
Q Consensus        80 ~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr  155 (455)
                      ....+++. .+.+.|++.|+|.|...+...++++|++|+++   |+++.++++.+.++|..+||.+++.+.++   .|||
T Consensus        95 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~  171 (475)
T TIGR00924        95 MLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYH  171 (475)
T ss_pred             HHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChH
Confidence            55555556 78889999999999999999999999998764   88899999999999999999999999887   8999


Q ss_pred             hhHHHhhHHHHHHHHHhhhhccc----CCCCCCCCChhHHHHHhhh----------------cccc--------------
Q psy3467         156 SIFYVFGLVGAVWSVAFLLYCYE----EPEAHPNIAEDERKYIMSS----------------VWGL--------------  201 (455)
Q Consensus       156 ~~f~~~~~~~~~~~i~~~~~~~e----~~~~~~~~~~~~~~~~~~~----------------~~~~--------------  201 (455)
                      +.|.+.++..++. ++.+.+.++    .|++++..++++++.....                ..+.              
T Consensus       172 ~~f~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (475)
T TIGR00924       172 VGFNLAAVGMVIG-LLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAV  250 (475)
T ss_pred             HHHHHHHHHHHHH-HHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            9999877655443 333333332    2211111111111110000                0000              


Q ss_pred             ----cCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccc----chhhchhHHHHHHHHHH
Q psy3467         202 ----AGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKE----NGTLSALPYLAMWIFSM  273 (455)
Q Consensus       202 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~g~~~~~~~~~~~~~~~  273 (455)
                          .++..++..+..+-.|...+..+.+...+.+..+....+.++.+.++..+.+...    .+.+.+...+..++.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p  330 (475)
T TIGR00924       251 IIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSP  330 (475)
T ss_pred             HHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHH
Confidence                0000011111111122234455556666667777777777888877754444222    56777777777777777


Q ss_pred             HHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy3467         274 FASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSS  313 (455)
Q Consensus       274 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (455)
                      +..++..|+.||.... ....+  ...++.+.+.+....+
T Consensus       331 ~~~~~~~~l~~~~~~~-~~~~k--~~~G~~l~~~~~~~~~  367 (475)
T TIGR00924       331 VLAMIWTRLGRKGKDP-TTPLK--FTLGMLFCGASFLTFA  367 (475)
T ss_pred             HHHHHHHHHHhCCCCC-CcHHH--HHHHHHHHHHHHHHHH
Confidence            7666666676652211 11111  3455555555555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.79  E-value=8.1e-17  Score=157.52  Aligned_cols=258  Identities=14%  Similarity=0.145  Sum_probs=188.5

Q ss_pred             hhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHh
Q psy3467          22 TRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQG   97 (455)
Q Consensus        22 ~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G   97 (455)
                      ...++.+.+|+|- ....+|+.+.+.++.+++.++.|+++|.||   ..+....+..++...++.+++. .++++..+.|
T Consensus        64 a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G  142 (599)
T PF06609_consen   64 ASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG  142 (599)
T ss_pred             HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence            4445667778875 468899999999999999999999999999   7777777888888889999999 9999999999


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      +|.|... .....++|..|.|.|....++......+....++.++..+..+   .+|||.|++..+...+..++.+++..
T Consensus       143 vgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~---~~WRw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  143 VGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH---SGWRWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             HhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC---CCcchHHHHHHHHHHHHHHHHHHHhC
Confidence            9977655 4566799999999999888888777666667788888877766   79999999998887776665554443


Q ss_pred             cCCCCC-CCCChhHHHHHhhh---------------------------cccc--------------------cC--CCCC
Q psy3467         178 EEPEAH-PNIAEDERKYIMSS---------------------------VWGL--------------------AG--VASS  207 (455)
Q Consensus       178 e~~~~~-~~~~~~~~~~~~~~---------------------------~~~~--------------------~~--~~~~  207 (455)
                      .+++.+ +..+..+++...+-                           ..++                    |.  ..++
T Consensus       219 PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~  298 (599)
T PF06609_consen  219 PPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKD  298 (599)
T ss_pred             CCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCC
Confidence            322211 11111111111110                           0000                    00  1134


Q ss_pred             CCCChhhhhcC-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccc---cchhhchhHHHHHHHHHHHHHHHHHHhh
Q psy3467         208 PPVPWKDIVSS-LPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIK---ENGTLSALPYLAMWIFSMFASFIADSMI  283 (455)
Q Consensus       208 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~g  283 (455)
                      +..| .+++|+ |.+....++.++....++....+.|......++-++.   +.++.......+..++.++.|.+..+++
T Consensus       299 Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir  377 (599)
T PF06609_consen  299 PLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIR  377 (599)
T ss_pred             CcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHcc
Confidence            4556 678887 4566656677777777888888888888877777653   5677888888888999999999998886


Q ss_pred             hc
Q psy3467         284 TS  285 (455)
Q Consensus       284 ~r  285 (455)
                      |-
T Consensus       378 ~~  379 (599)
T PF06609_consen  378 HI  379 (599)
T ss_pred             ch
Confidence            54

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.78  E-value=4.2e-17  Score=153.38  Aligned_cols=260  Identities=15%  Similarity=0.100  Sum_probs=177.0

Q ss_pred             HHHhhhhhcccCcccccccch-hhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHH
Q psy3467          18 NTKLTRRVHHKDGSFIWTTAE-QGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSII   92 (455)
Q Consensus        18 ~~~l~~~~~~~~~~~~~s~~~-~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~   92 (455)
                      .+.++-..|.+.+|+|+|+++ .|.+.+++..++++.+++.|.++||+|   +.........+...+..++++. .+.+.
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~  121 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM  121 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555667788899999999 999999999999999999999999999   4444444555555556666677 99999


Q ss_pred             HHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh--hHHHHHHHH
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF--GLVGAVWSV  170 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~--~~~~~~~~i  170 (455)
                      |++.|++.|... +...++..|+|++||+++.++...+..+|.++++++++.+ ..   .|||+.+...  ...+.....
T Consensus       122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s---~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VT---LGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCchhHHHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999999999999999999999994 44   7999866543  223334455


Q ss_pred             HhhhhcccCCCC---CCCCChhHH--HHHhhhcccccCCCCC-C-----------CCChhhhhcChhHHHHHHHHHHHHH
Q psy3467         171 AFLLYCYEEPEA---HPNIAEDER--KYIMSSVWGLAGVASS-P-----------PVPWKDIVSSLPFWAILIAHMGQNY  233 (455)
Q Consensus       171 ~~~~~~~e~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  233 (455)
                      ++.+++|..++.   ++..+.++.  ...++...+...+..+ .           ...+++..+||.++...+-+.+...
T Consensus       197 ~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~  276 (511)
T TIGR00806       197 FLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSA  276 (511)
T ss_pred             HHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhh
Confidence            556677743331   111000000  0000000000000000 0           1122344677777766666777777


Q ss_pred             HHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHh
Q psy3467         234 GYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSM  282 (455)
Q Consensus       234 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  282 (455)
                      +++.+.+|.....++.-+-.+.-+|.+-.+..+.+++..+..|++-.++
T Consensus       277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            7777777777666653221222556666666667777778888875444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0253|consensus

Probab=99.78  E-value=6.1e-17  Score=144.30  Aligned_cols=341  Identities=13%  Similarity=0.175  Sum_probs=213.0

Q ss_pred             hhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHH-HHHHHHHHHhhhhH-HHHHHHHHHh
Q psy3467          22 TRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSV-FAFLVPVAAGHSIL-ALSIIRFIQG   97 (455)
Q Consensus        22 ~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~-~~~~~~~~~~~~~~-~~~~~r~l~G   97 (455)
                      .-..|.....+|.+..+.+++......+..+++..+|.++|++|  .....+.+ -.+...+...++++ .+++.|.+.|
T Consensus        98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~  177 (528)
T KOG0253|consen   98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWG  177 (528)
T ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHh
Confidence            33445566778899999999999999999999999999999999  33333332 23344456677888 9999999999


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      +|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.+....++......   .||||.......+..+ +....+++|
T Consensus       178 ~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~-~a~f~~w~~  251 (528)
T KOG0253|consen  178 FGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMF-AARFLVWVY  251 (528)
T ss_pred             ccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHH-HHHHHhhcc
Confidence            99998 899999999999999999888777 99999999999999998888   8999998888765555 556677889


Q ss_pred             cCCCCCCCCChhHHHH--Hhhhcc--------------------ccc--------CCCCCCCCChhhhhc---ChhHHHH
Q psy3467         178 EEPEAHPNIAEDERKY--IMSSVW--------------------GLA--------GVASSPPVPWKDIVS---SLPFWAI  224 (455)
Q Consensus       178 e~~~~~~~~~~~~~~~--~~~~~~--------------------~~~--------~~~~~~~~~~~~~~~---~~~~~~~  224 (455)
                      |+|+..-...+++++.  +++..+                    +++        ...++...+..+++.   ++....+
T Consensus       252 ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlll  331 (528)
T KOG0253|consen  252 ESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLL  331 (528)
T ss_pred             cCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHH
Confidence            9998643222222211  111000                    000        011122233334432   1234445


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH--hc-----------------CccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         225 LIAHMGQNYGYETLMTELPTFMKQV--LH-----------------FNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g-----------------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      ...++...+.+++.........+..  .+                 .+....-.=..+..+....|.++.+++.||+|||
T Consensus       332 w~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK  411 (528)
T KOG0253|consen  332 WRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK  411 (528)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch
Confidence            5555666666666554444444331  01                 1111111112345677889999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHH------HHHH--hhHHhcCCCCceEEEEEecCcccccccCCCCCcccccc
Q psy3467         286 EKFSHTSTRKIINAFLYQVLSFGMIVSSAL------MIWK--GLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGL  357 (455)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  357 (455)
                      +.          +...++...+..+.+...      ..|.  +-+++.+.+..+.                   ...-+.
T Consensus       412 kT----------Mal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaY-------------------vYtPEV  462 (528)
T KOG0253|consen  412 KT----------MALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAY-------------------VYTPEV  462 (528)
T ss_pred             hH----------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEE-------------------EecCcc
Confidence            76          444444443333322111      0111  1112222222111                   111123


Q ss_pred             ccCCCcccccccccccccccccceeeEEEEeccCCCCCCCCCcHH
Q psy3467         358 YAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPKFKSPPVPWK  402 (455)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~  402 (455)
                      |++    -.+...+|.+++..+++++++|.+.- ..+.+...|..
T Consensus       463 yPT----avRatgvGtcSsmaRIggI~~p~iA~-~~e~s~sl~i~  502 (528)
T KOG0253|consen  463 YPT----AVRATGVGTCSSMARIGGIFSPVIAM-RAELSTSLPIF  502 (528)
T ss_pred             cch----hhhhcchhhhhhHHhhhhhhhhHHHH-HhccceeehHH
Confidence            333    35667888999999999999998873 22344455654

>KOG0255|consensus

Probab=99.77  E-value=7.7e-17  Score=161.28  Aligned_cols=263  Identities=14%  Similarity=0.142  Sum_probs=180.5

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchh
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVP  105 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~  105 (455)
                      +..+.+.....+..+++++|..+|++++|+++||+|   +.+....+..++....++++++ .+++.|+++|++.++...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            456667888899999999999999999999999999   6777777777778888899999 999999999999999999


Q ss_pred             hHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCC
Q psy3467         106 CTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPN  185 (455)
Q Consensus       106 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~  185 (455)
                      ....++.|++++|+|+.+..+ ......+..+++..++++.     .+||+.+++..+++.+..+. +++.||+|++...
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-----~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-----RDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999 6666666667777766664     48999999999998874444 6667799975322


Q ss_pred             CCh-hHHHHHhhhc-c-----cc--------------cCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhH
Q psy3467         186 IAE-DERKYIMSSV-W-----GL--------------AGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPT  244 (455)
Q Consensus       186 ~~~-~~~~~~~~~~-~-----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (455)
                      ..+ ++..+..++. +     ..              .....+++..+.++++.|++....+...+.++.......-++.
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence            211 1111111110 0     00              0011123355788888886655555555544433333333333


Q ss_pred             HHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy3467         245 FMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSS  313 (455)
Q Consensus       245 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (455)
                      ...+ +|.+....   ....+.....+....+...||.|||..          ...+.....++.++..
T Consensus       344 ~~~~-lg~~~~~~---~~~~~~~~~p~~~~~~~~~~~~gR~~~----------~~~~~~~~~~~~~~~~  398 (521)
T KOG0255|consen  344 NVSG-LGGNIYLN---FTLSGLVELPAYFRNGLLLPEFGRRPP----------LFLSLFLAGIGLLLFG  398 (521)
T ss_pred             hhhh-cCchHHHH---HHHHHHHHhhHHHHHHHHHHHhCcHHH----------HHHHHHHHHHHHHHHH
Confidence            3333 45444332   333344666777777899999988754          4444444444444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.77  E-value=9.9e-18  Score=164.22  Aligned_cols=244  Identities=15%  Similarity=0.098  Sum_probs=174.2

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH----Hh----HHHHHHHHHHHHHHHHHhhh------hH-HHHHH
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK----YG----IGMLINSVFAFLVPVAAGHS------IL-ALSII   92 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~G----~~l~~~~~~~~~~~~~~~~~------~~-~~~~~   92 (455)
                      +.+++|+++.++|++.++..+..++.+++.|.++||    +|    ..+.......+........+      .. .+++.
T Consensus        26 ~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  105 (437)
T TIGR00792        26 YTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYIT  105 (437)
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            456789999999999999999999999999999998    45    22233233333333222222      13 66778


Q ss_pred             HHHHhhcccCchhhHHHHHhccc-CCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc----ccCCCCchhHHHhhHHHHH
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWI-PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY----GFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~----~~~~~wr~~f~~~~~~~~~  167 (455)
                      +++.+++.+...+...++..|.. ++|||++..++.+.+..+|..+++.+.+.+...    ....+||+.+.+.++++++
T Consensus       106 ~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~  185 (437)
T TIGR00792       106 YILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVV  185 (437)
T ss_pred             HHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHH
Confidence            88889888877777888889988 468999999999999999888877766555431    0125899999999988888


Q ss_pred             HHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy3467         168 WSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMK  247 (455)
Q Consensus       168 ~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (455)
                      ..++.++..||++++++..   ++            ++.+..+.+++++++|.++...+..++............+.+.+
T Consensus       186 ~~~~~~~~~~e~~~~~~~~---~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (437)
T TIGR00792       186 SLIICFFGTKERYSEIPKN---IE------------KKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFT  250 (437)
T ss_pred             HHHHHHcCCEecCCCCCcc---cc------------cCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEe
Confidence            7777777778765321110   00            00111234567889999988887777777776666556666665


Q ss_pred             HHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       248 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ..++ ++.+.+.+.....++.+++.++.+++.||+|+|+.
T Consensus       251 ~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~  289 (437)
T TIGR00792       251 YVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL  289 (437)
T ss_pred             eecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            5444 45566677777788899999999999999998854

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615|consensus

Probab=99.77  E-value=3e-17  Score=147.21  Aligned_cols=246  Identities=14%  Similarity=0.098  Sum_probs=158.3

Q ss_pred             cccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHH
Q psy3467          34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHA  109 (455)
Q Consensus        34 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~  109 (455)
                      .+..-.|.+.|.|+++..+.++.+|.++||+|   +.+++.....+....-+.++++ .+++.|++.|+..| ...+..+
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA  143 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA  143 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence            45567899999999999999999999999999   4444444444455566677788 77777999999987 6688899


Q ss_pred             HHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH----HHHHHHhhhhcccCCCCCCC
Q psy3467         110 LLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG----AVWSVAFLLYCYEEPEAHPN  185 (455)
Q Consensus       110 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~----~~~~i~~~~~~~e~~~~~~~  185 (455)
                      +++|.+++|+|++.++.....+++|.++||++++++.+.....| +..|.....+.    ..-.....+++||+-+.+++
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~  222 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR  222 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence            99999999999999999999999999999999999987210022 33333322222    22133456788998544333


Q ss_pred             CChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccch
Q psy3467         186 IAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFW-------AILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENG  258 (455)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g  258 (455)
                      .++  .....+....+.+..+.....-...+||++..       ...+..+.+...+.....+.+.+..+.+|+++.|.|
T Consensus       223 ~~~--~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G  300 (451)
T KOG2615|consen  223 NDE--HSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG  300 (451)
T ss_pred             ccc--ccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe
Confidence            311  11011100000000000011112234444322       222333333333444444455554567999999999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHhh
Q psy3467         259 TLSALPYLAMWIFSMFASFIADSMI  283 (455)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g  283 (455)
                      .+.+..++...+.+.......||.+
T Consensus       301 ~vl~~tGl~m~~~ql~~~~~l~~~~  325 (451)
T KOG2615|consen  301 KVLSTTGLLMLVIQLALVPILPRYK  325 (451)
T ss_pred             eeeehhhHHHHHHHHhccccccccc
Confidence            9999988888888877777777665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.76  E-value=2.3e-16  Score=152.10  Aligned_cols=254  Identities=9%  Similarity=-0.066  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHH--HHHHHHHHHHhhhhhHH-HHhHHh--HH-HHHH-HHHH-HHHHHH-
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYV--LSSFFYGYVLTQIPFGI-LAKKYG--IG-MLIN-SVFA-FLVPVA-   81 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~--~s~~~l~~~~~~~~~g~-l~dr~G--~~-l~~~-~~~~-~~~~~~-   81 (455)
                      .+..+.......|.+|...+|.|.|.+++|+.  .++..+...+.+++++. .+||+|  .. ++.. .... ...... 
T Consensus        10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~   89 (390)
T TIGR02718        10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLAL   89 (390)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHc
Confidence            34444445667788888888999999999997  46677788788888844 688888  22 1111 1111 111111 


Q ss_pred             -Hhhhh-H-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhH
Q psy3467          82 -AGHSI-L-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIF  158 (455)
Q Consensus        82 -~~~~~-~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f  158 (455)
                       ....+ . .++..-++.++..+...+...++..|..++|+++...+....+..+|..+|+...+.+.++   .|||..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f  166 (390)
T TIGR02718        90 VGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAF  166 (390)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHH
Confidence             11222 2 4455556666667777788888888988888889888889888899999999999898888   8999999


Q ss_pred             HHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHH
Q psy3467         159 YVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETL  238 (455)
Q Consensus       159 ~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (455)
                      ++.+.+.++..+..++..||++++++.    +               +++..+.++.+|+|.++......++........
T Consensus       167 ~~~a~l~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  227 (390)
T TIGR02718       167 LLVACVPLASLVCVLWLKDRAVASPEA----P---------------LARRASLFRFFRRPLAWSLLALALLSAMTAVSG  227 (390)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcCcccc----c---------------hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence            999988877555554444443221110    0               001123578888888887777777777777777


Q ss_pred             HhhhhHHHHHHhcCccccchhhchhHHH-HHHHHHHHHHHHHHHhhhccc
Q psy3467         239 MTELPTFMKQVLHFNIKENGTLSALPYL-AMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       239 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ..+.+.|++| .|+++++.|........ ...++.++.|++.||+++|+.
T Consensus       228 ~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~  276 (390)
T TIGR02718       228 FGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT  276 (390)
T ss_pred             HHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            8888999988 79999999998887764 566778899999999998854

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.75  E-value=3.9e-21  Score=189.08  Aligned_cols=248  Identities=17%  Similarity=0.262  Sum_probs=170.0

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhh---hH-HHHHHHHHHhhcccCchhhHH
Q psy3467          36 TAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHS---IL-ALSIIRFIQGLGEGPIVPCTH  108 (455)
Q Consensus        36 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~---~~-~~~~~r~l~G~~~~~~~~~~~  108 (455)
                      +.+.++..+...+|..+|+++.|.++||+|   ..+....+..++..+..+++   ++ .+.++|+++|++.|...+...
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            346789999999999999999999999999   44555555556666666777   77 999999999999999999999


Q ss_pred             HHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCCh
Q psy3467         109 ALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAE  188 (455)
Q Consensus       109 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~  188 (455)
                      .++.|..|+|+|++..++.+.+..+|..++..++..+....++.+||..+.+.++++++ .++..+++||+|++--.+++
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~-~~~~~~~~pESP~wL~~~~~  203 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL-VLLLRFFLPESPRWLLSKGR  203 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceeccccc
Confidence            99999999999999999999999999999998887665441114599999999888877 45566889999986422221


Q ss_pred             hHH-HHHhhhcc-------cccC------CCCCCCCChhhhhcChh----HHHHHHHH-HHHHHHHHHHHhhhhHHHHHH
Q psy3467         189 DER-KYIMSSVW-------GLAG------VASSPPVPWKDIVSSLP----FWAILIAH-MGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       189 ~~~-~~~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  249 (455)
                      +++ ++..++.+       +.++      +.++.+.+++++++++.    +....... +....+......+.+...++ 
T Consensus       204 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-  282 (451)
T PF00083_consen  204 DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-  282 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc-
Confidence            111 11111100       0000      00111134666776643    22222222 22233334445566666655 


Q ss_pred             hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       250 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+.+..  -.......+...++.+.+..+.||+|||+.
T Consensus       283 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~  318 (451)
T PF00083_consen  283 AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL  318 (451)
T ss_pred             cccccc--cccccccccccccccccccccccccccccc
Confidence            566665  222334456666777788899999999976

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=99.72  E-value=1.9e-15  Score=148.89  Aligned_cols=260  Identities=11%  Similarity=0.065  Sum_probs=184.1

Q ss_pred             HhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh------hhH-HH
Q psy3467          20 KLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH------SIL-AL   89 (455)
Q Consensus        20 ~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~------~~~-~~   89 (455)
                      .++...+++++++|+|.++.+++.++. .....++++.|+++||+|   +.+++.....++....+.+      .+. .+
T Consensus        45 ~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l  123 (591)
T PTZ00207         45 AFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL  123 (591)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence            344455667889999999999998874 455677888999999999   4445555555555555544      356 89


Q ss_pred             HHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHH
Q psy3467          90 SIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWS  169 (455)
Q Consensus        90 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~  169 (455)
                      .+.|+++|+|.+...+.+...+.+++| ++||++.++...+.++|.++.+.+...+..    .+|+..|++.+++.++..
T Consensus       124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~----~~~~~~fl~l~vl~~vv~  198 (591)
T PTZ00207        124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS----DNTSAYFFFLMSFALVVG  198 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHH
Confidence            999999999999889999999999996 889999999999999999764444444433    368899999999988888


Q ss_pred             HHhhhhcccCCCCC-----CCCChhHHHHH-------------------------------------hh-----------
Q psy3467         170 VAFLLYCYEEPEAH-----PNIAEDERKYI-------------------------------------MS-----------  196 (455)
Q Consensus       170 i~~~~~~~e~~~~~-----~~~~~~~~~~~-------------------------------------~~-----------  196 (455)
                      ++...++++.|...     ++.++++++..                                     ++           
T Consensus       199 ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~  278 (591)
T PTZ00207        199 ILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVG  278 (591)
T ss_pred             HHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            88888777665321     11122222200                                     00           


Q ss_pred             ----hc------c-------------cc-c---------------------------C-CCCCCCCChhhhhcChhHHHH
Q psy3467         197 ----SV------W-------------GL-A---------------------------G-VASSPPVPWKDIVSSLPFWAI  224 (455)
Q Consensus       197 ----~~------~-------------~~-~---------------------------~-~~~~~~~~~~~~~~~~~~~~~  224 (455)
                          ..      .             ++ +                           + ..++..+++.+.+++..+|.+
T Consensus       279 ~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll  358 (591)
T PTZ00207        279 FAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCL  358 (591)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHH
Confidence                00      0             00 0                           0 000111266777888899999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHh-cCcccc--chhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         225 LIAHMGQNYGYETLMTELPTFMKQVL-HFNIKE--NGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      ...+++...........+.++.+. + |.+..+  ...+.+..++.+.+|.+..|.+.....+|+
T Consensus       359 ~~~~~cg~g~gl~~~~N~~qI~~s-l~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~  422 (591)
T PTZ00207        359 LWSIFCCVGAHFVIIFNARFIYTA-LAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRR  422 (591)
T ss_pred             HHHHHHhhCchheeeecHHHHHHH-hcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhc
Confidence            999999888888888888888887 5 663333  333678899999999999999985555544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.72  E-value=2e-15  Score=148.33  Aligned_cols=240  Identities=18%  Similarity=0.173  Sum_probs=175.9

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHH---HHHHHHhh--hhH-HHHHHHHHHhhcc
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAF---LVPVAAGH--SIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~---~~~~~~~~--~~~-~~~~~r~l~G~~~  100 (455)
                      .+..-|+...+++..+..+...+.++++|.++||+.   +.+....+..+   ...+....  .+. .+++.-++.|++.
T Consensus        38 ~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~  117 (524)
T PF05977_consen   38 TQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGS  117 (524)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence            344557889999999999999999999999999999   22222222211   11111111  233 7888999999999


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCC
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEP  180 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~  180 (455)
                      +...|+.++++.|..|+|+...++++.+...++...+||.++|.+...   .|-.+.|.+.++..++. +..+...++++
T Consensus       118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~---~G~~~~f~inalsfl~~-i~~l~~~~~~~  193 (524)
T PF05977_consen  118 AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF---FGAAAAFLINALSFLIS-ILALLRWKPPP  193 (524)
T ss_pred             HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHccccc
Confidence            999999999999999999999999999999999999999999999887   78888998887765553 33333333322


Q ss_pred             CCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhh
Q psy3467         181 EAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTL  260 (455)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~  260 (455)
                      +.++..+++-.              ++-+..++.+.++|.+....+..++.+.........+|.+.++.+|.++...|++
T Consensus       194 ~~~~~~~e~~~--------------~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll  259 (524)
T PF05977_consen  194 PPSSLPRERFF--------------SALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLL  259 (524)
T ss_pred             cccccchhhhh--------------hhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHH
Confidence            21111111100              1122334555667777666665556566555666778999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         261 SALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+..++|.++|.+..+++.+|+++++.
T Consensus       260 ~a~~gvGai~Gal~~~~l~~~~~~~~l  286 (524)
T PF05977_consen  260 LAAFGVGAILGALLLPRLRRRLSSRRL  286 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCcchh
Confidence            999999999999999999888877654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.65  E-value=1.1e-13  Score=137.10  Aligned_cols=159  Identities=17%  Similarity=0.057  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh---HHHHHHHHHHHHHHH
Q psy3467           6 HTAYSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG---IGMLINSVFAFLVPV   80 (455)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G---~~l~~~~~~~~~~~~   80 (455)
                      ...+..+..+.....+...++. +.+++|+++++.+++.+.+........+++|+++|| +|   ..+.+..+..++...
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            3334444444444334443333 357899999999999988877777777899999999 59   334444444444444


Q ss_pred             HHhhh-hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCc--chhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCch
Q psy3467          81 AAGHS-IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTE--RSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPS  156 (455)
Q Consensus        81 ~~~~~-~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~  156 (455)
                      ...++ .. .+.+.|+++|++.|...+...+++.|++|+++  |..+.++++.+.++|..++|.+++++.++   .|||+
T Consensus       105 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~  181 (500)
T PRK09584        105 VAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSV  181 (500)
T ss_pred             HHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHH
Confidence            44443 34 67788999999999999999999999998653  45678899999999999999999999988   89999


Q ss_pred             hHHHhhHHHHH
Q psy3467         157 IFYVFGLVGAV  167 (455)
Q Consensus       157 ~f~~~~~~~~~  167 (455)
                      .|.+.++..++
T Consensus       182 ~F~i~~i~~~i  192 (500)
T PRK09584        182 AFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHH
Confidence            99987754444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.65  E-value=1.1e-14  Score=134.88  Aligned_cols=188  Identities=13%  Similarity=0.022  Sum_probs=144.6

Q ss_pred             hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhccc-----------
Q psy3467          83 GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF-----------  150 (455)
Q Consensus        83 ~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~-----------  150 (455)
                      ..+++ .++++-++.|.|.+..++..+.++++..++|++++.+++.+.+.++|..++|.+++.+...+.           
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            34567 999999999999999999999999999999999999999999999999999999998774210           


Q ss_pred             --CCCCchhHHHhhHHHHHHHHHhhh-hcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHH
Q psy3467         151 --AGGWPSIFYVFGLVGAVWSVAFLL-YCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIA  227 (455)
Q Consensus       151 --~~~wr~~f~~~~~~~~~~~i~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (455)
                        ..+||++|++.+.+..+..+...+ -.||.++++     +++..            +++..+.++.+|+|.++...+.
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~-----~~~~~------------~~~~~~~~~~~~~~~~~l~~~~  148 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEAD-----VARVS------------SGDTTQKTSAFQFTHLVLGALG  148 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc-----ccccc------------cccccchhhHHhhHHHHHHHHH
Confidence              037999999776665553443322 223321111     00000            0000112456778888888888


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHH--hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         228 HMGQNYGYETLMTELPTFMKQV--LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .++......+...|.+.|+++.  +|+++.+.+...+.+..+..++++.++++.||+++|+.
T Consensus       149 ~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~  210 (310)
T TIGR01272       149 IFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY  210 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            8887778889999999999864  68999999999999999999999999999999998754

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0252|consensus

Probab=99.63  E-value=1.4e-15  Score=139.89  Aligned_cols=298  Identities=13%  Similarity=0.143  Sum_probs=188.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhccc-CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH
Q psy3467           3 GVQHTAYSIFVSRVINTKLTRRVHHK-DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV   78 (455)
Q Consensus         3 ~v~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~   78 (455)
                      |....+|++|+-+.++..+......- .++=+.++...+.+..+..+|..+||++.|++.||+|   ++.....+..+++
T Consensus        49 GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t  128 (538)
T KOG0252|consen   49 GFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICS  128 (538)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHH
Confidence            44567788888888887777665432 2233466777889999999999999999999999999   3333333333443


Q ss_pred             HHHHh-----hh--hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh---
Q psy3467          79 PVAAG-----HS--IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE---  147 (455)
Q Consensus        79 ~~~~~-----~~--~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~---  147 (455)
                      ..++.     ++  -. ++.+.|++.|+|.|+-+|...++.+|...+++||...+..-.....|...|.+++-.+..   
T Consensus       129 ~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe  208 (538)
T KOG0252|consen  129 ALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE  208 (538)
T ss_pred             HHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh
Confidence            33322     11  23 889999999999999999999999999999999999999888888888777766654432   


Q ss_pred             c---------ccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhc-------ccccC---CCCCC
Q psy3467         148 Y---------GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSV-------WGLAG---VASSP  208 (455)
Q Consensus       148 ~---------~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~  208 (455)
                      .         ..+.-||..+-+.++++++ .....+.+||+++.+.-.+++.++..++..       .+++.   ..+.+
T Consensus       209 ~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~  287 (538)
T KOG0252|consen  209 KIFNGPSTYPHLDGVWRIIFGLGAVPALL-VLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPP  287 (538)
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCc
Confidence            1         0012399998887777766 556677789988765211111111111100       00000   00111


Q ss_pred             CCC---hhhhhcC---hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchh-----hch----hHHHHHHHHHH
Q psy3467         209 PVP---WKDIVSS---LPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGT-----LSA----LPYLAMWIFSM  273 (455)
Q Consensus       209 ~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~-----~~~----~~~~~~~~~~~  273 (455)
                      ..+   +.+.+..   +++...+..+++.-...+....+....++. .|+.+.+...     ..-    +...++++|..
T Consensus       288 ~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw  366 (538)
T KOG0252|consen  288 SNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYW  366 (538)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCcee
Confidence            111   2222222   345666677777777777777777777776 6877766554     100    11122233444


Q ss_pred             HHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHH
Q psy3467         274 FASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVS  312 (455)
Q Consensus       274 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (455)
                      +...++|++|||+.          ...++.+..+..+++
T Consensus       367 ~tv~~id~iGRk~i----------q~~GF~~~~i~~~~~  395 (538)
T KOG0252|consen  367 FTVYFIDIIGRKYI----------QLMGFFIMTIFFFVI  395 (538)
T ss_pred             EEEEEeehhhhHHH----------HHhhHHHHHHHHHHH
Confidence            55668999999865          555665555444443

>KOG3626|consensus

Probab=99.59  E-value=4e-14  Score=139.64  Aligned_cols=281  Identities=13%  Similarity=0.186  Sum_probs=210.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHH
Q psy3467           5 QHTAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLV   78 (455)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~   78 (455)
                      ....+..+.+++....+...+.++++.|+++.++.|++.+.+-++..+...+..+..-|.-      ..++..++..+..
T Consensus       100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            4556777888888888889999999999999999999999999999999999999988765      3344444433333


Q ss_pred             HHH------------H-----------------------------------hhh--hH-HHHHHHHHHhhcccCchhhHH
Q psy3467          79 PVA------------A-----------------------------------GHS--IL-ALSIIRFIQGLGEGPIVPCTH  108 (455)
Q Consensus        79 ~~~------------~-----------------------------------~~~--~~-~~~~~r~l~G~~~~~~~~~~~  108 (455)
                      .+-            .                                   ..+  .+ .++++.++.|+|....++.+.
T Consensus       180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi  259 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI  259 (735)
T ss_pred             hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence            211            0                                   001  23 788899999999999999999


Q ss_pred             HHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCC----------------CCchhHHHhhHHHHHHHHHh
Q psy3467         109 ALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAG----------------GWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus       109 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~----------------~wr~~f~~~~~~~~~~~i~~  172 (455)
                      +|+-|...+|+-...+|++.....+|.++|.++++++.+...+.                -|..-|++.+.+.++..+..
T Consensus       260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~  339 (735)
T KOG3626|consen  260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL  339 (735)
T ss_pred             ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987631111                15556777788877767776


Q ss_pred             hhhcccCCCCCCCCChhHHHHHhhhcc-cccCC-----CCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3467         173 LLYCYEEPEAHPNIAEDERKYIMSSVW-GLAGV-----ASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFM  246 (455)
Q Consensus       173 ~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (455)
                      +++-++.|+.+++...++.+..+.+.. .++..     .++.....+++++||.+....+...+......+..+++|-|+
T Consensus       340 f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyL  419 (735)
T KOG3626|consen  340 FFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYL  419 (735)
T ss_pred             HhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHH
Confidence            666555555443322222211111111 00000     011234457789999999999999999999999999999999


Q ss_pred             HHHhcCccccchhhchhHHH-HHHHHHHHHHHHHHHhhhc
Q psy3467         247 KQVLHFNIKENGTLSALPYL-AMWIFSMFASFIADSMITS  285 (455)
Q Consensus       247 ~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r  285 (455)
                      +.+||.+++++..+.....+ +..+|.+++|++.+|+.-+
T Consensus       420 E~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  420 ETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            99999999999988866554 4567788999999988755

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.59  E-value=3.2e-14  Score=138.82  Aligned_cols=242  Identities=17%  Similarity=0.181  Sum_probs=181.4

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHh----HHh----HHHHHHHHHHHHHHHHHhh--------hhH-HHHH
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAK----KYG----IGMLINSVFAFLVPVAAGH--------SIL-ALSI   91 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~G----~~l~~~~~~~~~~~~~~~~--------~~~-~~~~   91 (455)
                      .+.+|+++...|.+..+..+..++..|+.|.++|    |+|    ..+.+.....+........        ... .+.+
T Consensus        29 ~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~  108 (428)
T PF13347_consen   29 TDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV  108 (428)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence            4557999999999999999999999999999999    788    2222222222222211111        122 4577


Q ss_pred             HHHHHhhcccCchhhHHHHHhcccC-CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhccc---C-CCCchhHHHhhHHHH
Q psy3467          92 IRFIQGLGEGPIVPCTHALLAKWIP-PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF---A-GGWPSIFYVFGLVGA  166 (455)
Q Consensus        92 ~r~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~---~-~~wr~~f~~~~~~~~  166 (455)
                      ..++..++.......-.++..|..+ +|+|.+..+.-..+..+|..+...+.+.+.+..+   . .+|++..++.+++.+
T Consensus       109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~  188 (428)
T PF13347_consen  109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL  188 (428)
T ss_pred             HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence            7777799999999999999999997 5789999999999999998777666666553211   1 179999999999999


Q ss_pred             HHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3467         167 VWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFM  246 (455)
Q Consensus       167 ~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (455)
                      +..++..+..||.+++.++   ++             ++.+.++.+++++|||+++.+.+..++............+.|.
T Consensus       189 v~~~i~~~~~ke~~~~~~~---~~-------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~  252 (428)
T PF13347_consen  189 VFFLITFFFVKERSVEVTE---QE-------------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYF  252 (428)
T ss_pred             HHhhhhhheeeeccccccc---cc-------------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            8888888888882111110   00             0123445668899999999999998888888888888888888


Q ss_pred             HHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         247 KQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       247 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ++..|.+ ...+.+.....++..++.++.++++||+|+|+.
T Consensus       253 ~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~  292 (428)
T PF13347_consen  253 TYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV  292 (428)
T ss_pred             HHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence            8877766 556777778888999999999999999999987

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.58  E-value=1.7e-16  Score=156.28  Aligned_cols=277  Identities=13%  Similarity=0.209  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHH--
Q psy3467           9 YSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPV--   80 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~--   80 (455)
                      +..++..+.+......+.++++.|+++.++.|++.+.+-++..+..++..++.+|..      .+.+..++..+...+  
T Consensus        10 ~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh   89 (539)
T PF03137_consen   10 LLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH   89 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence            344455667777888889999999999999999999999999999999999998855      222222222221110  


Q ss_pred             ------------------------H-------------------H-hhh-hH-HHHHHHHHHhhcccCchhhHHHHHhcc
Q psy3467          81 ------------------------A-------------------A-GHS-IL-ALSIIRFIQGLGEGPIVPCTHALLAKW  114 (455)
Q Consensus        81 ------------------------~-------------------~-~~~-~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~  114 (455)
                                              +                   . ... .+ .+++++++.|+|.+..++.+.+|+-|.
T Consensus        90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn  169 (539)
T PF03137_consen   90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN  169 (539)
T ss_dssp             --------------------------------------------------------------SSS---------------
T ss_pred             hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence                                    1                   0 000 13 888999999999999999999999999


Q ss_pred             cCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc------c---------C----CCCchhHHHhhHHHHHHHHHhhhh
Q psy3467         115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG------F---------A----GGWPSIFYVFGLVGAVWSVAFLLY  175 (455)
Q Consensus       115 ~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~------~---------~----~~wr~~f~~~~~~~~~~~i~~~~~  175 (455)
                      .++|+-+..+|++.....+|.++|.++++.+.+..      +         +    .-|..-|++.+.+.++..++.++|
T Consensus       170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F  249 (539)
T PF03137_consen  170 VSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF  249 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998776420      0         0    126666777777777767776666


Q ss_pred             cccCCCCCCCCChhHH--HHHhhhc----cccc------CCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhh
Q psy3467         176 CYEEPEAHPNIAEDER--KYIMSSV----WGLA------GVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELP  243 (455)
Q Consensus       176 ~~e~~~~~~~~~~~~~--~~~~~~~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
                      -++-|+.++..++++.  ...++..    .+++      ...++.....+++++||.+....+..........++.++.|
T Consensus       250 Pk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~p  329 (539)
T PF03137_consen  250 PKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLP  329 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555554111111110  0000000    0000      11133345568899999999999999999999999999999


Q ss_pred             HHHHHHhcCccccchhhchhHHH-HHHHHHHHHHHHHHHhhhc
Q psy3467         244 TFMKQVLHFNIKENGTLSALPYL-AMWIFSMFASFIADSMITS  285 (455)
Q Consensus       244 ~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r  285 (455)
                      .|++.+++.++.+++++.....+ +.++|.+++|++.+|++-+
T Consensus       330 KylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  330 KYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            99999999999999988866554 6678889999999998755

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.58  E-value=2.1e-12  Score=125.44  Aligned_cols=157  Identities=18%  Similarity=0.094  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHhhhhhccc-CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHH-h---HHHHHHHHHHHHHHHHH
Q psy3467           8 AYSIFVSRVINTKLTRRVHHK-DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY-G---IGMLINSVFAFLVPVAA   82 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-G---~~l~~~~~~~~~~~~~~   82 (455)
                      .+.....+.....+...++.. .+++|+++.+.+.+.+.+.....++.+++|+++||+ |   ..+.+..+..+......
T Consensus        15 ~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~   94 (493)
T PRK15462         15 VALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG   94 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence            333444444433333333333 456899999999999999999999999999999999 8   23333333333332322


Q ss_pred             hhh-hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCC--cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhH
Q psy3467          83 GHS-IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPT--ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIF  158 (455)
Q Consensus        83 ~~~-~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f  158 (455)
                      ..+ +. .+.+...+.++|.|...+...++++|.+|++  +|..+.++.+.+.++|..++|.+.+++.+.   .|||+.|
T Consensus        95 ~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F  171 (493)
T PRK15462         95 ASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGF  171 (493)
T ss_pred             HhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHH
Confidence            222 11 3333444445566667777889999999875  799999999999999999999999999887   8999999


Q ss_pred             HHhhHHHHH
Q psy3467         159 YVFGLVGAV  167 (455)
Q Consensus       159 ~~~~~~~~~  167 (455)
                      .+.++..++
T Consensus       172 ~iaaigm~l  180 (493)
T PRK15462        172 GLAAVGMIA  180 (493)
T ss_pred             HHHHHHHHH
Confidence            986654433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.57  E-value=8e-13  Score=127.84  Aligned_cols=252  Identities=13%  Similarity=0.060  Sum_probs=161.6

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHh----HHh---HHHHHHHH-HHHHHHHHHhhhhH---------
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAK----KYG---IGMLINSV-FAFLVPVAAGHSIL---------   87 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~G---~~l~~~~~-~~~~~~~~~~~~~~---------   87 (455)
                      ++.+.+++|.+..+.+++..+..+...+.+++.|.++|    |+|   ..++...+ ..+...+..++++.         
T Consensus        27 l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~  106 (477)
T TIGR01301        27 LTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD  106 (477)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence            33355678999999999999999999999999999999    599   22222122 22222222222221         


Q ss_pred             ---------HHHHHHHHHhhcccCchhhHHHHHhcccCCCcc--hhHHHHHHhhHHHHHHHHHHHHHHhH--hc-c----
Q psy3467          88 ---------ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTER--SRLGAFVYAGAQFGTVFSLPLSGLLS--EY-G----  149 (455)
Q Consensus        88 ---------~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~g~~i~~~l~--~~-~----  149 (455)
                               ..+++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|..+|+.+++...  +. +    
T Consensus       107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~  186 (477)
T TIGR01301       107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT  186 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence                     112222233447777788889999999998865  68999999999999999999998752  11 0    


Q ss_pred             ---c--CCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcC-----h
Q psy3467         150 ---F--AGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSS-----L  219 (455)
Q Consensus       150 ---~--~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  219 (455)
                         .  ..+.|..|++.++..++..++..+..||.|..+++..+++ + .    +  +.++.+....+++++++     |
T Consensus       187 ~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-~-~----~--~~~~~~~~~~~~~i~~~~~~mP~  258 (477)
T TIGR01301       187 EACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-E-A----A--PPSKHGEEAFFGELFGAFKYLPR  258 (477)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-h-c----c--cccccchhhhHHHHHHHHHHCCH
Confidence               0  0156889999888888888888889999764322111000 0 0    0  00001111233444432     5


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhcCccccc---------h-hhchhHHHHHHHHHHHHHHHHHHhhh
Q psy3467         220 PFWAILIAHMGQNYGYETLMTELPTFMKQ-VLHFNIKEN---------G-TLSALPYLAMWIFSMFASFIADSMIT  284 (455)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~---------g-~~~~~~~~~~~~~~~~~g~l~dr~g~  284 (455)
                      .++.+++..++.+++...+..+.+.+..+ .++.++.+.         | +....+.+...+.+++..++.+|+|+
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~  334 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            68899999999999999999999988764 565543221         1 12222334444555566667777774

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.55  E-value=1.5e-12  Score=124.39  Aligned_cols=258  Identities=16%  Similarity=0.161  Sum_probs=171.4

Q ss_pred             HHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHHHHHhhhhH
Q psy3467          12 FVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVPVAAGHSIL   87 (455)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~~~~~~~~~   87 (455)
                      ++.-.......|.++..-++.|.|.+|+|.+.++..+...+.++++|.++||++    +..+...+..+........+++
T Consensus        12 f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f   91 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSF   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            333444444555666667778999999999999999999999999999999998    2222222233333333344455


Q ss_pred             -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHH-HHHhHhcccCCCCchhHHHhhHHH
Q psy3467          88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL-SGLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus        88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i-~~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                       .+++.-++..+......|...++..+...  +++.-.|-.-...++|.+++... +..+....+..+....+++.+..+
T Consensus        92 ~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  169 (400)
T PF03825_consen   92 WWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILS  169 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence             66777777788888888999998888875  34445566666677777666443 233333200022334556655554


Q ss_pred             HHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy3467         166 AVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTF  245 (455)
Q Consensus       166 ~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (455)
                      ++ .....+.+|+.|.+++..+ +.+              ++...+..+++|+|++....+..++..........+.+.|
T Consensus       170 ~l-l~~~~l~lp~~~~~~~~~~-~~~--------------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~y  233 (400)
T PF03825_consen  170 LL-LAGFALFLPKTPPKRSAKE-SVK--------------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIY  233 (400)
T ss_pred             HH-HHHHHHhCCCCccccccCC-Ccc--------------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 3333445677663221111 100              1122233679999999988888888888888889999999


Q ss_pred             HHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         246 MKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       246 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +++.-|.+....+...+...+++++.-...+++.+|+|.|+.
T Consensus       234 l~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l  275 (400)
T PF03825_consen  234 LQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL  275 (400)
T ss_pred             HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            999433677777877777778888888889999999998754

>TIGR00788 fbt folate/biopterin transporter

Probab=99.54  E-value=7e-14  Score=137.20  Aligned_cols=255  Identities=12%  Similarity=0.013  Sum_probs=158.9

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--------HHHHHHHHH-HHHHHHHHhhhhH--HHHHHH
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--------IGMLINSVF-AFLVPVAAGHSIL--ALSIIR   93 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--------~~l~~~~~~-~~~~~~~~~~~~~--~~~~~r   93 (455)
                      .+.+.+++|+|.++++...++..+...+-.+ +|+++||++        ..++...+. .......+..++.  ...+..
T Consensus        49 ~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  127 (468)
T TIGR00788        49 SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI  127 (468)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            3445667999999999999999999988555 999999995        222222222 1221222222333  444588


Q ss_pred             HHHhhcccCchhhHHHHHhcccCCCcchhHH---HHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHH
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLG---AFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~---~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      ++.+++.+...++..++..|..+ |++....   +......++|..+++.+++.+.+.   .+||..|++.+.+.++. .
T Consensus       128 ~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~-~  202 (468)
T TIGR00788       128 FLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQ-L  202 (468)
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHH-H
Confidence            99999999999999999999998 5554433   333444568999999999999988   89999999988887775 4


Q ss_pred             HhhhhcccCCC-CCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHH-HHHHHHHHhhhhHHHHH
Q psy3467         171 AFLLYCYEEPE-AHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQ-NYGYETLMTELPTFMKQ  248 (455)
Q Consensus       171 ~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  248 (455)
                      ....++||++. ..++..+++...............++...+.++.+++|.++...+..++. ........... .+.++
T Consensus       203 ~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~  281 (468)
T TIGR00788       203 FVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQ  281 (468)
T ss_pred             HHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcc
Confidence            44566787642 11111110000000000000000001112234567778877655544442 11111111110 12234


Q ss_pred             HhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         249 VLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       249 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      ..|+++.+.|......+++.+++....+++.+|++.|+
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~  319 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL  319 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence            58999999999999988888888888888888877664

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.52  E-value=6.2e-13  Score=130.40  Aligned_cols=241  Identities=14%  Similarity=0.068  Sum_probs=156.9

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH----Hh---HHHH-HHHHHHHHHHHHHhh------hhH-HHHHH
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK----YG---IGML-INSVFAFLVPVAAGH------SIL-ALSII   92 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~G---~~l~-~~~~~~~~~~~~~~~------~~~-~~~~~   92 (455)
                      ..+++|++..++|.+.++..+..++..|+.|.++||    +|   ..++ +.....+........      ... .+++.
T Consensus        36 ~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~  115 (444)
T PRK09669         36 YTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVT  115 (444)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            345789999999999999999999999999999999    66   2222 222222222221111      123 55666


Q ss_pred             HHHHhhcccCchhhHHHHHhccc-CCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc----ccCCCCchhHHHhhHHHHH
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWI-PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY----GFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~----~~~~~wr~~f~~~~~~~~~  167 (455)
                      ..+.+.+.......-.++.+|+. +++||++..+....+..+|..+++.+...+...    ....+|+..+.+.+++.++
T Consensus       116 ~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v  195 (444)
T PRK09669        116 YILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVV  195 (444)
T ss_pred             HHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence            66667666667677778999998 568899998998888888888887665444332    0114788888888887777


Q ss_pred             HHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy3467         168 WSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMK  247 (455)
Q Consensus       168 ~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (455)
                      ..+..++..+|.++.+++    ++              .+...+.++++|||+++.+....++............+.|.+
T Consensus       196 ~~~~~~~~~~e~~~~~~~----~~--------------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~  257 (444)
T PRK09669        196 LFFCCFFMTKERYTPEVD----NS--------------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVN  257 (444)
T ss_pred             HHHHHhCCeEEecCCCCc----CC--------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeee
Confidence            666666666664322110    00              112234577889999888877766655555444443443334


Q ss_pred             HHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       248 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ...+ ++...+.+.....+..+++.++.+++.||+|+|+.
T Consensus       258 ~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~  296 (444)
T PRK09669        258 YVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRA  296 (444)
T ss_pred             eecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            3222 23333344445556777888889999999998864

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.52  E-value=2.2e-13  Score=134.44  Aligned_cols=245  Identities=9%  Similarity=-0.016  Sum_probs=160.3

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHh----HHh---HHHHHHHHH-HHHHHHHHh----hhh--H-HHHHHH
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAK----KYG---IGMLINSVF-AFLVPVAAG----HSI--L-ALSIIR   93 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~G---~~l~~~~~~-~~~~~~~~~----~~~--~-~~~~~r   93 (455)
                      .+.+|++..++|.+..+..+.-++..|+.|.++|    |+|   ..++...+. .+.......    .+.  . .+++..
T Consensus        34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~  113 (473)
T PRK10429         34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY  113 (473)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence            3457999999999999999999999999999999    568   222222222 222121111    111  2 455666


Q ss_pred             HHHhhcccCchhhHHHHHhccc-CCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc----ccCCCCchhHHHhhHHHHHH
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWI-PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY----GFAGGWPSIFYVFGLVGAVW  168 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~----~~~~~wr~~f~~~~~~~~~~  168 (455)
                      .+.+++.....+...++..|.. +++||.+..+.-..+.++|..+.+.+...+.+.    +...+|+....+.+++.++.
T Consensus       114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~  193 (473)
T PRK10429        114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS  193 (473)
T ss_pred             HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            6777778778888889999999 688999999987777777766665554433221    01135777777777776665


Q ss_pred             HHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy3467         169 SVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQ  248 (455)
Q Consensus       169 ~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (455)
                      .+..++..||.++.+...+++ +            ++.+.++.++.+++||.++.+....++.+..........+.|.+.
T Consensus       194 ~~~~~~~~~e~~~~~~~~~~~-~------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y  260 (473)
T PRK10429        194 TIITLRNVHEVYSSDNQVSAE-G------------SHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTY  260 (473)
T ss_pred             HHHHHcCceecCCcccccccc-c------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEE
Confidence            666666667753221100000 0            001122334556789888888887777777666666666655554


Q ss_pred             HhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         249 VLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       249 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      . ..++...+.+.....++.+++.++.+++.||+|+|+.
T Consensus       261 ~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~  298 (473)
T PRK10429        261 V-IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL  298 (473)
T ss_pred             E-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            3 3345556666666678888999999999999999864

>KOG2563|consensus

Probab=99.47  E-value=2.1e-12  Score=119.27  Aligned_cols=246  Identities=15%  Similarity=0.129  Sum_probs=181.3

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH---HHHHhh---h-hH--HHHHHH
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV---PVAAGH---S-IL--ALSIIR   93 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~---~~~~~~---~-~~--~~~~~r   93 (455)
                      +...+-++ +....-|..-+|++.+....+++-++.||+|   ..++....-.++.   .++...   + .+  ....+.
T Consensus        69 n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq  147 (480)
T KOG2563|consen   69 NYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQ  147 (480)
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhH
Confidence            33444466 6667789999999999999999999999999   3333333333333   333222   1 11  566788


Q ss_pred             HHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc---cCCCCch--hHHHhhHHHHHH
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG---FAGGWPS--IFYVFGLVGAVW  168 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~---~~~~wr~--~f~~~~~~~~~~  168 (455)
                      .+.+.++-........+..-|++++||..+..+-..+..+|.+++.++...+..+.   ....|-.  .|+..+.++.+.
T Consensus       148 ~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~  227 (480)
T KOG2563|consen  148 SIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALL  227 (480)
T ss_pred             HHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            89888888777777788899999999999999999999999999999998887653   1134544  355555555554


Q ss_pred             HHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy3467         169 SVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQ  248 (455)
Q Consensus       169 ~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (455)
                      .++..+..++.|+.++..+.+..+            ..+-..+.+++++|+++..+.+.+......++...+.+...+..
T Consensus       228 l~l~~~~~~~~P~tPps~s~~~~~------------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~  295 (480)
T KOG2563|consen  228 LALVLFVFTKKPPTPPSASQAALQ------------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP  295 (480)
T ss_pred             HHHHHHhcCCCCCCCCchhHhhhh------------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc
Confidence            555666667766665544333322            02245566889999999999999999888888888877766666


Q ss_pred             HhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         249 VLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       249 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                       -|++...+|.......+++.++.+.+|.+.||.+.-
T Consensus       296 -sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f  331 (480)
T KOG2563|consen  296 -SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF  331 (480)
T ss_pred             -ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence             478878999999999999999999999999998763

>PRK09848 glucuronide transporter; Provisional

Probab=99.45  E-value=5.7e-12  Score=123.77  Aligned_cols=240  Identities=10%  Similarity=-0.012  Sum_probs=149.1

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHH----h---HHHHHHHH-HHHHHHHH-----Hhhhh--H-HHHH
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY----G---IGMLINSV-FAFLVPVA-----AGHSI--L-ALSI   91 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~----G---~~l~~~~~-~~~~~~~~-----~~~~~--~-~~~~   91 (455)
                      +.+++|++..++|.+.++..+..++..++.|.++||.    |   ..+....+ ..+.....     ...++  . ..+.
T Consensus        35 ~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (448)
T PRK09848         35 YTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYL  114 (448)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHH
Confidence            4566899999999999999999999999999999997    4   12222221 11111111     11111  1 3444


Q ss_pred             HHHHHhhcccCchhhHHHHHhcccCC-CcchhHHHHHHhhH-----HHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH
Q psy3467          92 IRFIQGLGEGPIVPCTHALLAKWIPP-TERSRLGAFVYAGA-----QFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus        92 ~r~l~G~~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~-----~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                      ...+.+++.+...+...++..|..++ +||.+..+.-..+.     .+|..++|.+++...... ..+|.....+.++++
T Consensus       115 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~  193 (448)
T PRK09848        115 TYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAG  193 (448)
T ss_pred             HHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHH
Confidence            55677877877777777777777754 67888877665443     345556666655432110 011211112223333


Q ss_pred             HHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy3467         166 AVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTF  245 (455)
Q Consensus       166 ~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (455)
                      ++..++.....||+++.+.+.                   +.....+++++|||.++...+..++............|.+
T Consensus       194 ~~~~~~~~~~~~e~~~~~~~~-------------------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~  254 (448)
T PRK09848        194 MVLYFICFKSTRENVVRIVAQ-------------------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY  254 (448)
T ss_pred             HHHHHHHHcCcEeccCCCccC-------------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence            333333334445543221100                   1112235778999999988888888888777777788888


Q ss_pred             HHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         246 MKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       246 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .++.+|.++...++......++..++.++.+++.||+++|+.
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~  296 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT  296 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            888788776655554444456778888999999999998754

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.44  E-value=8e-12  Score=117.32  Aligned_cols=242  Identities=14%  Similarity=0.131  Sum_probs=150.2

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHH-HHHHHHH--Hh-----hhhH-HHHHHHHHH
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVF-AFLVPVA--AG-----HSIL-ALSIIRFIQ   96 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~-~~~~~~~--~~-----~~~~-~~~~~r~l~   96 (455)
                      .++.|+|.+++|.+.++..+...+.+++.|.++||.|   ..+....+. .....+.  .+     .+.+ ..+++-...
T Consensus        35 ~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l  114 (412)
T PF01306_consen   35 TQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYL  114 (412)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTT
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999999999999999999   222221111 1111111  11     1111 333333444


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhc
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYC  176 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~  176 (455)
                      |+...+..|+.-+++.++.  ++.+.=.|-.-...++|.+++..++|.+.+.    +-+..||+....+++..++..+..
T Consensus       115 ~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~  188 (412)
T PF01306_consen  115 GLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLK  188 (412)
T ss_dssp             TTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             HHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcC
Confidence            5555555566666655554  3445556777788889999999999998774    446788877666666555555555


Q ss_pred             ccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh---cCc
Q psy3467         177 YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVL---HFN  253 (455)
Q Consensus       177 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s  253 (455)
                      |+.+++.+..+.++.+           +++...++..+++|+|++|.+.+........+.......+.|.++.+   +.+
T Consensus       189 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g  257 (412)
T PF01306_consen  189 PDVPPQAEVADALGAK-----------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQG  257 (412)
T ss_dssp             --SSSSS-SSTTSSS-----------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred             CcCchhhhhhcccccC-----------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            5544332211111100           00111223467899999999888777777777777777777776522   234


Q ss_pred             cccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         254 IKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ....|++.+...+..++.-.+..++.+|+|.|+.
T Consensus       258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~  291 (412)
T PF01306_consen  258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL  291 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence            4557888888888899999999999999999965

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.44  E-value=7.2e-11  Score=115.06  Aligned_cols=240  Identities=15%  Similarity=0.103  Sum_probs=178.7

Q ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHhHHh---H-HHHHHHHHHHHHHHHHh--hhhH-HHHHHHHHHhhcccCchhhHHH
Q psy3467          37 AEQGYVLSSFFYGYVLTQIPFGILAKKYG---I-GMLINSVFAFLVPVAAG--HSIL-ALSIIRFIQGLGEGPIVPCTHA  109 (455)
Q Consensus        37 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~-~l~~~~~~~~~~~~~~~--~~~~-~~~~~r~l~G~~~~~~~~~~~~  109 (455)
                      +..++..++..+..++..|+.|.++|+-|   . ......+..+......+  .+++ ...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999888   2 22222222222222222  3344 5556666666777788889999


Q ss_pred             HHhcccCCCcc--------------------------hhHHHHHHhhHHHHHHHHHHHHHHhHhccc-----CCCCchhH
Q psy3467         110 LLAKWIPPTER--------------------------SRLGAFVYAGAQFGTVFSLPLSGLLSEYGF-----AGGWPSIF  158 (455)
Q Consensus       110 ~i~e~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~-----~~~wr~~f  158 (455)
                      ++.|..+++++                          ++..+.-.....+|..+.-.+.-.+.....     ..+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          899888888888988888777765543211     12358889


Q ss_pred             HHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHH
Q psy3467         159 YVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETL  238 (455)
Q Consensus       159 ~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (455)
                      .+.++.-++..++.++++||.|+.++..+....  .....       ++-...++++.|.|.+....+..++..-+..++
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~--~~~g~-------~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti  300 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY--LRFGF-------KRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTI  300 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH--HHHHH-------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            888888888899999999998763222111111  00000       112334567778889999999999999999999


Q ss_pred             HhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         239 MTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       239 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      ......|.++++|++..+...+.....+..++|.++.|++.||+|.|
T Consensus       301 ~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k  347 (477)
T PF11700_consen  301 ISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK  347 (477)
T ss_pred             HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999998888889999999999999999999998

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG4686|consensus

Probab=99.43  E-value=1.7e-13  Score=118.26  Aligned_cols=247  Identities=15%  Similarity=0.166  Sum_probs=170.8

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh------HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHh
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG------IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQG   97 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G------~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G   97 (455)
                      .+.+.|.+++.++..++.++|..-..+..++.|++.|| +|      +..+...+..+........+.+ +++.+||+.|
T Consensus        68 ~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FG  147 (459)
T KOG4686|consen   68 IDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFG  147 (459)
T ss_pred             hhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeec
Confidence            45677888999999999999999999999999999996 44      3333333333443334445566 9999999999


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCC------ch---hHHHhhHHHHHH
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGW------PS---IFYVFGLVGAVW  168 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w------r~---~f~~~~~~~~~~  168 (455)
                      +|.-....+-+++...|+..||.+.++|+......+|+.+--.+.+++.+.   .+-      ..   .....+...+..
T Consensus       148 IGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~---~~~~~~~~ghT~LG~~l~~~~~tc~~  224 (459)
T KOG4686|consen  148 IGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT---MGRMFPGVGHTLLGLWLCFEVKTCKQ  224 (459)
T ss_pred             cCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH---HHHhcccchHHHHHHHHHHHHHHHHH
Confidence            999888888899999999999999999999999999998887777777664   210      00   011111111111


Q ss_pred             HHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhh-cChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy3467         169 SVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIV-SSLPFWAILIAHMGQNYGYETLMTELPTFMK  247 (455)
Q Consensus       169 ~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (455)
                      ..+...-+-    ..+.+.|+..+. ++....     ++++.  .+.. -.|++|.+.+++++.+....-+....|.+++
T Consensus       225 slical~lg----~~D~rAerilh~-e~g~~G-----e~pkL--tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~  292 (459)
T KOG4686|consen  225 SLICALSLG----LSDDRAERILHL-EEGFLG-----EEPKL--TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQ  292 (459)
T ss_pred             HHHHHHHhh----hhhhHHHHHHhh-hcCccc-----CCccc--ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            111111000    000000111000 000000     11111  1111 1368999999999999888888899999999


Q ss_pred             HHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       248 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +++|+|+..++.+.+.......+.+++.|.++||.|++-.
T Consensus       293 ~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~  332 (459)
T KOG4686|consen  293 KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW  332 (459)
T ss_pred             HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh
Confidence            9999999999999999999999999999999999999843

>PRK11462 putative transporter; Provisional

Probab=99.39  E-value=1.2e-10  Score=114.41  Aligned_cols=238  Identities=15%  Similarity=0.027  Sum_probs=157.8

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhH----Hh---HHH-HHHHHHHHHHHHHHhhh------hH-HHHHHHH
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK----YG---IGM-LINSVFAFLVPVAAGHS------IL-ALSIIRF   94 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~G---~~l-~~~~~~~~~~~~~~~~~------~~-~~~~~r~   94 (455)
                      +..|++...+|.+..+.-+--++..|+.|.++||    +|   ..+ .+.....+...+.-..+      .. .+.+.-.
T Consensus        38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~  117 (460)
T PRK11462         38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT  117 (460)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence            4678999999999999999999999999999996    56   222 22222222222221111      12 4556666


Q ss_pred             HHhhcccCchhhHHHHHhcccC-CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhccc----CCCCchhHHHhhHHHHHHH
Q psy3467          95 IQGLGEGPIVPCTHALLAKWIP-PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF----AGGWPSIFYVFGLVGAVWS  169 (455)
Q Consensus        95 l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~----~~~wr~~f~~~~~~~~~~~  169 (455)
                      +..++.......-.++..|..+ +|||++..++...+..+|..+++.+...+.+..+    ..+|+....+.+++.++..
T Consensus       118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            6777787777888889999987 6899999999999999998888777655444210    1357777777777766655


Q ss_pred             HHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467         170 VAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       170 i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (455)
                      .+.+...+|.++.++.     +              .+.+...+..++||.++.+....++..............|.+..
T Consensus       198 ~i~~~~~kE~~~~~~~-----~--------------~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~  258 (460)
T PRK11462        198 AFCFFTTKERVEAPPT-----T--------------TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI  258 (460)
T ss_pred             HHHHhcceeccCCCcc-----C--------------CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Confidence            5555555664322110     0              01122346778888887776665555555554444455555543


Q ss_pred             hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       250 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +|. +...+.+.....++.+++.++++++.||+++|+.
T Consensus       259 ~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~  295 (460)
T PRK11462        259 LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI  295 (460)
T ss_pred             cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            443 3334555667778888899999999999998753

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.39  E-value=2.4e-12  Score=104.53  Aligned_cols=133  Identities=25%  Similarity=0.443  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCC
Q psy3467          43 LSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPT  118 (455)
Q Consensus        43 ~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~  118 (455)
                      .+.+.++..+++++.|++.||+|   ..........+........++. .+.+.+++.|++.+...+....++.|..|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44567888999999999999999   3333333333333334444566 8888999999999999999999999999999


Q ss_pred             cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         119 ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       119 ~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      +|++..+..+....+|..++|.+.+.+.+.   .+||+.+++.+.+.++..+..+++.||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999887   899999999888877766666666555

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.35  E-value=6e-11  Score=112.62  Aligned_cols=245  Identities=14%  Similarity=0.074  Sum_probs=182.5

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH----Hh----HHHHHHHHHHHHHHHHHhhh------hH-HHHHHH
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK----YG----IGMLINSVFAFLVPVAAGHS------IL-ALSIIR   93 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~G----~~l~~~~~~~~~~~~~~~~~------~~-~~~~~r   93 (455)
                      .+..|++...+|.+..+.-+--++..|+.|.++||    +|    ..+.+.....+...+.-.++      .. ..++..
T Consensus        40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY  119 (467)
T COG2211          40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY  119 (467)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence            45689999999999999999999999999999996    66    33333333333333332222      23 667778


Q ss_pred             HHHhhcccCchhhHHHHHhcccC-CCcchhHHHHHHhhHHHHHHHHHHHHHHhHh----cccCCCCchhHHHhhHHHHHH
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIP-PTERSRLGAFVYAGAQFGTVFSLPLSGLLSE----YGFAGGWPSIFYVFGLVGAVW  168 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~----~~~~~~wr~~f~~~~~~~~~~  168 (455)
                      .+.+++.......-.++..|+.+ ++||.+..+.-+.+.++|..+...+...+..    .+...||+..-.+.++++++.
T Consensus       120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~  199 (467)
T COG2211         120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL  199 (467)
T ss_pred             HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence            88899999888888889999885 6899999999999999997776666554443    111257888888888888887


Q ss_pred             HHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy3467         169 SVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQ  248 (455)
Q Consensus       169 ~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (455)
                      .+.+++-.+|.+.+....+++.+              .+....+..++||+++...++...+..............|.+.
T Consensus       200 ~l~~~~~v~ER~~~~~~~~~~~~--------------~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y  265 (467)
T COG2211         200 LLFCFFNVKERVVETQPTKTGVK--------------LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY  265 (467)
T ss_pred             HHHHHHHhhcccCccccCccccc--------------ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE
Confidence            88888888887653222111111              1122233467899999999888888888887777888888888


Q ss_pred             HhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         249 VLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       249 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+|.+..+..........+.+++.++...+.+|+|+|+.
T Consensus       266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~  304 (467)
T COG2211         266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL  304 (467)
T ss_pred             EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH
Confidence            888888888888878888888889999999999999976

>TIGR00889 2A0110 nucleoside transporter

Probab=99.33  E-value=3.8e-11  Score=116.51  Aligned_cols=145  Identities=17%  Similarity=0.213  Sum_probs=114.1

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh-h---hhH-HHHHHHHHHhhcccCchhhH
Q psy3467          36 TAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG-H---SIL-ALSIIRFIQGLGEGPIVPCT  107 (455)
Q Consensus        36 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~-~---~~~-~~~~~r~l~G~~~~~~~~~~  107 (455)
                      .++.+...++..++..++.++.|+++||+|   .......+..+....... .   .+. .+++.+++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            467799999999999999999999999999   222222222222222222 1   123 66778999999998888999


Q ss_pred             HHHHhcccCCCcchhHHHHHH-hhHHHHHHHHHHHHHHhHhcccC---CCCchhHHHhhHHHHHHHHHhhhhcccCC
Q psy3467         108 HALLAKWIPPTERSRLGAFVY-AGAQFGTVFSLPLSGLLSEYGFA---GGWPSIFYVFGLVGAVWSVAFLLYCYEEP  180 (455)
Q Consensus       108 ~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~---~~wr~~f~~~~~~~~~~~i~~~~~~~e~~  180 (455)
                      ..++.|++|+++|+++.++.+ ....+|..+||.+++.+.++...   .|||..|.+.+++.++..++.++++||+.
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999997 67889999999999999886221   36999999999988888888888888763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.31  E-value=1.6e-12  Score=128.47  Aligned_cols=58  Identities=40%  Similarity=0.566  Sum_probs=54.3

Q ss_pred             CCCcHHHHHhhHHHHHHHHHHhcchhhHHHHHhhhhHHHHHhhccccccceeeecccC
Q psy3467         397 PPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSS  454 (455)
Q Consensus       397 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~~~~p~  454 (455)
                      .+.||+++++++++|...+++++.++.++.+.+|+|+|++|++|+|.++.|++.++|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~  307 (465)
T TIGR00894       250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPY  307 (465)
T ss_pred             CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHH
Confidence            3568999999999999999999999999999999999999999999999999887775

>KOG2325|consensus

Probab=99.30  E-value=4.1e-10  Score=107.24  Aligned_cols=246  Identities=13%  Similarity=0.106  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcc--cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHH
Q psy3467           6 HTAYSIFVSRVINTKLTRRVHHKDGS--FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVP   79 (455)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~   79 (455)
                      ...+..++..+-.+.+.+..-+..++  .+.+.+..|++.++..++.++++++.|..+.|.+    ..+.+..+..++..
T Consensus        38 l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l  117 (488)
T KOG2325|consen   38 LALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL  117 (488)
T ss_pred             HHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence            34445555555555554444444444  6778888999999999999999999999999999    33333333333333


Q ss_pred             HH----Hhhh-hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC
Q psy3467          80 VA----AGHS-IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG  153 (455)
Q Consensus        80 ~~----~~~~-~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~  153 (455)
                      +.    -..+ .- .++++|++.|+|.+ ......+++++-...++|.++++....+..+|..+||.+...+...+. .|
T Consensus       118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~-~G  195 (488)
T KOG2325|consen  118 LYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE-KG  195 (488)
T ss_pred             HHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC-Cc
Confidence            32    2233 23 99999999999977 668889999999999999999999999999999999999887765311 12


Q ss_pred             -----------CchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHH
Q psy3467         154 -----------WPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFW  222 (455)
Q Consensus       154 -----------wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (455)
                                 ...+-|+.+++.++..+...++.+|.++.....+.++.+   +. +.++++.+.++.+      .+..+
T Consensus       196 ~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~d------~~~~~  265 (488)
T KOG2325|consen  196 FMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE---EE-KSDIEKVKKPKLD------WVAVL  265 (488)
T ss_pred             eEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch---hh-ccchhhhccCChh------HHHHH
Confidence                       234567788888888888888888876544222111110   00 0000000111222      12344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchh
Q psy3467         223 AILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSAL  263 (455)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~  263 (455)
                      .+.+..+...+......+..+......++++.+++-...+.
T Consensus       266 vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi  306 (488)
T KOG2325|consen  266 VCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGI  306 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhh
Confidence            55556666666666667777777777788887776555544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.28  E-value=4e-10  Score=104.19  Aligned_cols=235  Identities=14%  Similarity=0.072  Sum_probs=157.4

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---------HHHHHHHHHHHHHHHHH-----hh--------hh
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---------IGMLINSVFAFLVPVAA-----GH--------SI   86 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---------~~l~~~~~~~~~~~~~~-----~~--------~~   86 (455)
                      ..|++++.+..+.+.++..+.. ...+.+|..||+.+         ....+............     ..        +.
T Consensus         7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            4578888989999999888766 46999999999866         11112222111111111     11        12


Q ss_pred             H----HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCC-chhHHH-
Q psy3467          87 L----ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGW-PSIFYV-  160 (455)
Q Consensus        87 ~----~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w-r~~f~~-  160 (455)
                      +    .......+.|+|.+...+...++++|..|||+|+++.++......+|.+++..+.+.+.+.   .+- |-.-.+ 
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~---~s~~rL~~v~~  162 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP---FSPERLIQVIQ  162 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHH
Confidence            2    3445567889999999999999999999999999999999999999999999999988765   332 222222 


Q ss_pred             -hhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHH
Q psy3467         161 -FGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLM  239 (455)
Q Consensus       161 -~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (455)
                       .+++.++..++. .+-.|.++.++...++             +++......++++.++|+........++....+..=-
T Consensus       163 ~~a~i~~~l~~ia-~wg~E~r~~~~~~~~~-------------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD  228 (403)
T PF03209_consen  163 GVALIALLLNLIA-LWGQEPRRSRRAAAAE-------------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQD  228 (403)
T ss_pred             HHHHHHHHHHHHH-HHhcccCCcccccCCC-------------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhH
Confidence             222222212222 2222322222110000             0112233455677788887777777777666666656


Q ss_pred             hhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHH
Q psy3467         240 TELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADS  281 (455)
Q Consensus       240 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr  281 (455)
                      ..+-+|--+.+|+++.|+..+......+..++-...|++..|
T Consensus       229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~  270 (403)
T PF03209_consen  229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR  270 (403)
T ss_pred             HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            777888888999999999999999999999999999887774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.26  E-value=2.6e-10  Score=113.33  Aligned_cols=152  Identities=11%  Similarity=0.095  Sum_probs=106.9

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--H-HHHHHHHHHHHH---HHHHhhhhH-HHHHHHHHHhhccc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--I-GMLINSVFAFLV---PVAAGHSIL-ALSIIRFIQGLGEG  101 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~-~l~~~~~~~~~~---~~~~~~~~~-~~~~~r~l~G~~~~  101 (455)
                      ++++|.+..+.++..+...++..++.++.|+++||+|  . .+.......+..   .....+++. .++++|++.|++.+
T Consensus       278 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  357 (490)
T PRK10642        278 SHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN  357 (490)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            3567888888888888899999999999999999999  2 222221111111   111223345 77788999988777


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE  181 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~  181 (455)
                      ........++.|.+|++.|+++++.......++..++|.+.+.+.+..  .+|+..++...+++++..+ ..+++||+|+
T Consensus       358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~-~~~~~pes~~  434 (490)
T PRK10642        358 CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLI-TGVTMKETAN  434 (490)
T ss_pred             HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHH-HHHHhccccC
Confidence            666777888899999999999999754445566678888888887641  3578777766666655343 4456799987


Q ss_pred             CC
Q psy3467         182 AH  183 (455)
Q Consensus       182 ~~  183 (455)
                      +.
T Consensus       435 ~~  436 (490)
T PRK10642        435 RP  436 (490)
T ss_pred             CC
Confidence            54

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.26  E-value=2e-11  Score=119.98  Aligned_cols=141  Identities=16%  Similarity=0.109  Sum_probs=112.0

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-----HHHHHHHHH--HHHHHHHHhhhhH-HHHHHHHHHh
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-----IGMLINSVF--AFLVPVAAGHSIL-ALSIIRFIQG   97 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----~~l~~~~~~--~~~~~~~~~~~~~-~~~~~r~l~G   97 (455)
                      +...+++|.+..+.+++.++..++..+++++.|.++||..     ...+..+..  ..........++. .+++.+++.|
T Consensus       265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G  344 (455)
T TIGR00892       265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFG  344 (455)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            3444567899999999999999999999999999999743     122222111  1222233344556 7788999999


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCC-CCchhHHHhhHHHHHHH
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAG-GWPSIFYVFGLVGAVWS  169 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~-~wr~~f~~~~~~~~~~~  169 (455)
                      ++.+...+...+++.|.+|+++|++.+++++....+|..+||.+++.+.+.   . +|++.|++.+++.++..
T Consensus       345 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~---~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       345 LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA---TKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh---cCCcchHHHHhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999998876   5 69999999887766543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=5.4e-10  Score=103.08  Aligned_cols=242  Identities=13%  Similarity=0.047  Sum_probs=175.5

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHHH-HHhhh--hH-HHHHHHHHHhhcccCchhh
Q psy3467          35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVPV-AAGHS--IL-ALSIIRFIQGLGEGPIVPC  106 (455)
Q Consensus        35 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~~-~~~~~--~~-~~~~~r~l~G~~~~~~~~~  106 (455)
                      +.+..+...++..+..++.+|+.|.++|+.|    ..-....+....... ....+  .+ ..++.-.+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            3456788999999999999999999999999    111111222222111 11122  34 7777888889999989999


Q ss_pred             HHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc---------------ccCCCCchhHHHhhHHHHHHHHH
Q psy3467         107 THALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY---------------GFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus       107 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~---------------~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      -.+++.|..++++-++..++-.....+|..+.-.+.-...-.               .+..+-|..+.+.++.-++..++
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            999999999998888887776666666666555443211110               01135688888888888888888


Q ss_pred             hhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Q psy3467         172 FLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLH  251 (455)
Q Consensus       172 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  251 (455)
                      .++..|+.++.....+    +...+..       ++-..++++..+++.+....++.++..-+.+++......|....+|
T Consensus       216 m~~~v~~~~~~~~~~~----~~l~~g~-------k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~g  284 (438)
T COG2270         216 MILNVHDAEKISSPPP----TALRNGF-------KELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLG  284 (438)
T ss_pred             HHhcccccccccccch----HHHHHHH-------HHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence            8888887665321111    1111111       1223456788888888999999999999999999999999998899


Q ss_pred             CccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         252 FNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       252 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ++..+..++.....+..+++.++.|++.||+|.|++
T Consensus       285 ls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v  320 (438)
T COG2270         285 LSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV  320 (438)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence            999999999999999999999999999999999976

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.25  E-value=2.6e-09  Score=97.27  Aligned_cols=240  Identities=14%  Similarity=0.045  Sum_probs=155.8

Q ss_pred             hhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhc
Q psy3467          23 RRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLG   99 (455)
Q Consensus        23 ~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~   99 (455)
                      |.+-.+-+++|.++.|++.+....+...++..++.|.++||+|  ...+..++.-..+.+....+++ .++++|++.|++
T Consensus        55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGia  134 (354)
T PF05631_consen   55 PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIA  134 (354)
T ss_pred             chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3344455679999999999999999999999999999999999  4444455544455556666777 999999999999


Q ss_pred             ccCchhhHHHHH-hccc----CCCcchhHHHHHH-hhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467         100 EGPIVPCTHALL-AKWI----PPTERSRLGAFVY-AGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus       100 ~~~~~~~~~~~i-~e~~----~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      .+..+.+-.+.+ .|.-    |++..+...+... ....+-.+.+.+++-.+.+.. ..|-..+|.....+..+..++..
T Consensus       135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~-~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF-GFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHHHH
Confidence            998887777654 3332    2222333333333 222233344445555555440 02447888888777777677666


Q ss_pred             hhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcC
Q psy3467         174 LYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLM-TELPTFMKQVLHF  252 (455)
Q Consensus       174 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~  252 (455)
                      ...+|+..+..+.++.. +.              ....++.+.++|+++.+.++-.+.-...+.+. .|.|..- .  +-
T Consensus       214 ~~W~ENyg~~~~~~~~~-~~--------------~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~-~--~~  275 (354)
T PF05631_consen  214 KTWPENYGDTSSSSSLS-GS--------------FREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD-P--DD  275 (354)
T ss_pred             hcccccCCCcccccchH-HH--------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec-C--CC
Confidence            66677644322111111 11              11223667788999988888777777766655 4555543 2  12


Q ss_pred             ccccchhhchhHHHHHHHHHHHHHHHHHH
Q psy3467         253 NIKENGTLSALPYLAMWIFSMFASFIADS  281 (455)
Q Consensus       253 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr  281 (455)
                      ....-|++++.+..+..+|+-+..++..|
T Consensus       276 ~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  276 EELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33457999999999999988887665543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.25  E-value=2.3e-11  Score=111.83  Aligned_cols=71  Identities=10%  Similarity=0.093  Sum_probs=61.9

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3467         217 SSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKF  288 (455)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~  288 (455)
                      |.+.+....+.+...+..+..+....|...++ .++|..|.|.+.+.+.+.|.++.++.|.++||.++|+.+
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm   97 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM   97 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence            33456777788888888888888888887777 789999999999999999999999999999999999763

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.22  E-value=3.9e-10  Score=109.12  Aligned_cols=137  Identities=20%  Similarity=0.213  Sum_probs=106.9

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhc
Q psy3467          38 EQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAK  113 (455)
Q Consensus        38 ~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e  113 (455)
                      +.++..+.+.++..++.++.|++.||+|   ..........+........++. .+++.+++.|++.+...+.....+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4567778889999999999999999999   2222222222222233334455 77788999999999888888888899


Q ss_pred             ccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467         114 WIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus       114 ~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      ..|+|+|+++.++++....+|..+++.+.+.+.++   .||++.|++.+.+.++..+..+++.+
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999888   89999999988887775555554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.22  E-value=2.4e-10  Score=111.40  Aligned_cols=146  Identities=13%  Similarity=0.125  Sum_probs=115.1

Q ss_pred             ccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhh
Q psy3467          31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPC  106 (455)
Q Consensus        31 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~  106 (455)
                      +.+.+..+.|++.++..++..++.++.|+++||+|   .......+..+........++. .+++.+++.|++.+...+.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778899999999999999999999999999   2222233333333334445566 7888899999998877788


Q ss_pred             HHHHHhcccCCCcchhHHHH-HHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         107 THALLAKWIPPTERSRLGAF-VYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       107 ~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      ...++.|.+|++.|+...+. ++....+|..++|.+.+++.+.   .|||..|.+.+++.++..++.++..+++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88999999999999887655 6677889999999999999998   8999999998888777666666665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.19  E-value=3.8e-10  Score=109.87  Aligned_cols=155  Identities=15%  Similarity=0.029  Sum_probs=123.3

Q ss_pred             hhcccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhh
Q psy3467          24 RVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGL   98 (455)
Q Consensus        24 ~~~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~   98 (455)
                      .+|...++ +|.+..+.+++.+...++..++.++.+++.||.+   .......+..+........++. ...+..++.|+
T Consensus       245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (417)
T PRK10489        245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY  324 (417)
T ss_pred             hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            34444444 8899999999999999999999999999999877   2333333333333334445555 67778888999


Q ss_pred             cccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467          99 GEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus        99 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      +.+...+...+++.|..|+|+|+++++++.....+|..+||.+.+.+.+.   .|.+..++..+.+.++..++....+||
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM---MTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            88877788889999999999999999999999999999999999999998   899999988888777766777677776


Q ss_pred             CCC
Q psy3467         179 EPE  181 (455)
Q Consensus       179 ~~~  181 (455)
                      .++
T Consensus       402 ~~~  404 (417)
T PRK10489        402 LRR  404 (417)
T ss_pred             ccc
Confidence            544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.18  E-value=9.2e-09  Score=97.20  Aligned_cols=145  Identities=22%  Similarity=0.195  Sum_probs=115.6

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHH-h---HHHHHHHHHHHHHHHHHhhh--hH-HHHHHHHHHhhccc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY-G---IGMLINSVFAFLVPVAAGHS--IL-ALSIIRFIQGLGEG  101 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-G---~~l~~~~~~~~~~~~~~~~~--~~-~~~~~r~l~G~~~~  101 (455)
                      .+.+|+|++++.-+.+.|.--.-+...++|+++||+ |   ..+++..+..++....+..+  .. .+.++-.+.++|.|
T Consensus        53 ~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~G  132 (498)
T COG3104          53 GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTG  132 (498)
T ss_pred             cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccc
Confidence            334789999998899988888889999999999995 4   45555555555555444442  34 78888888889999


Q ss_pred             CchhhHHHHHhcccCCC--cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467         102 PIVPCTHALLAKWIPPT--ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      ..-+...++++|.+|++  +|-...++++.+.++|+.++|.+.+++.+.   .||...|-..++-..+ .++.+...+
T Consensus       133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~-gl~~f~~~~  206 (498)
T COG3104         133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMII-GLVIFLLGR  206 (498)
T ss_pred             cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHH-HHHHHHHcc
Confidence            99999999999999865  578889999999999999999999999998   9999999887766555 333333333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.17  E-value=1.8e-11  Score=116.45  Aligned_cols=53  Identities=9%  Similarity=0.038  Sum_probs=45.4

Q ss_pred             cHHHHHhhHHHHHHHHHHhcchhhHHHHHhhhhHHHHHhhccccccceeeecccC
Q psy3467         400 PWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTSS  454 (455)
Q Consensus       400 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~~~~p~  454 (455)
                      +++++++++.+|.+.+.+++.+..+|.+.+|+|+|+++ +|+|.+ .|.+.++|+
T Consensus       184 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~  236 (368)
T TIGR00903       184 EFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAI  236 (368)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHH
Confidence            57889999999999999999999999999999999976 678864 566665553

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.17  E-value=5.6e-10  Score=106.85  Aligned_cols=139  Identities=12%  Similarity=0.012  Sum_probs=109.6

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhh--H-HHHHHHHHHhhc
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSI--L-ALSIIRFIQGLG   99 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~--~-~~~~~r~l~G~~   99 (455)
                      +...+++|.++++.+++.+.+.++..++.++.|+++||+|   ..........+........++  . .++...++.|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  308 (377)
T TIGR00890       229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT  308 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence            3345668888889999999999999999999999999999   222222222222222222222  2 455667888888


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+...+....++.|.+|+|+|+++.++.+....+|..++|.+.+.+.+.   .||++.|.+.+++.++
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALT  373 (377)
T ss_pred             hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHH
Confidence            8888888889999999999999999999999999999999999999988   8999999888776665

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.16  E-value=9e-10  Score=106.92  Aligned_cols=137  Identities=19%  Similarity=0.176  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcc
Q psy3467          39 QGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKW  114 (455)
Q Consensus        39 ~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~  114 (455)
                      .+.+.++..++..++.+..|+++||+|   .......+..+........++. .+++.+++.|++.+...+...+.+.|.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            466677778888899999999999999   2222222222233333333445 778899999999999999999999999


Q ss_pred             cCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       115 ~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      .|+++|++.+++.+....+|..+||.+++.+.+.   .||++.|++.+++.++..+..++..++
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988   899999999988888766666554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.16  E-value=9.9e-10  Score=103.99  Aligned_cols=150  Identities=22%  Similarity=0.290  Sum_probs=122.8

Q ss_pred             HhhhhhcccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--H-HHH-HHHHHHHHHHHHHhhhhH-HHHHHH
Q psy3467          20 KLTRRVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--I-GML-INSVFAFLVPVAAGHSIL-ALSIIR   93 (455)
Q Consensus        20 ~l~~~~~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~-~l~-~~~~~~~~~~~~~~~~~~-~~~~~r   93 (455)
                      ......+...++ +|.++.+.++..+...++..++.++.+++.||+|  . .+. ...+..+........++. .+.+..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  272 (352)
T cd06174         193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL  272 (352)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            333444444444 4889999999999999999999999999999999  3 333 333333444444445556 888999


Q ss_pred             HHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      ++.|++.+...+....++.|..|+|+|++.+++.+....+|..+++.+.+.+.+.   .+|+..+.+.+++.++..+..
T Consensus       273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999987   899999999988887755544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2816|consensus

Probab=99.16  E-value=1e-09  Score=105.83  Aligned_cols=249  Identities=14%  Similarity=0.117  Sum_probs=162.7

Q ss_pred             HHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcc--cCchhhHHHHHhcccCCCcchh
Q psy3467          47 FYGYVLTQIPFGILAKKYG--IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGE--GPIVPCTHALLAKWIPPTERSR  122 (455)
Q Consensus        47 ~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~--~~~~~~~~~~i~e~~~~~~r~~  122 (455)
                      .+...+.++..|.++||+|  ..+......+.....+.....+++.+   +.|+..  +.......++++|....++|..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh---hcccccchhhhhhhhhhheeeccchhHHHH
Confidence            6777899999999999999  44444445554444444334443333   444433  3356788899999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhccccc
Q psy3467         123 LGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLA  202 (455)
Q Consensus       123 ~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  202 (455)
                      .+++.+..+..+..++|.+++.+.+.   .|--.+|.+..+..++..+...+++||+...+++..++.++....+  ...
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~--~~~  223 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKF---LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGS--LDS  223 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCc--ccc
Confidence            99999999999999999999999998   8889999999999998888888999997554433210000000000  000


Q ss_pred             CCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHH-HHHH
Q psy3467         203 GVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYET-LMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFAS-FIAD  280 (455)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~d  280 (455)
                      ....+........-.+|..+.+++..+........ ..-..+.|++..+++++.+.+.+.+.......+++++.. .+..
T Consensus       224 ~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~  303 (463)
T KOG2816|consen  224 SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSS  303 (463)
T ss_pred             hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011111111111233444444444443333322 121446777888999999999999999999999998877 6666


Q ss_pred             HhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy3467         281 SMITSEKFSHTSTRKIINAFLYQVLSFGMIVSS  313 (455)
Q Consensus       281 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (455)
                      .++.|+.          ...+...........+
T Consensus       304 ~l~~~~~----------i~lGl~~~~~~~~~~a  326 (463)
T KOG2816|consen  304 ILGEKRL----------ISLGLLSEFLQLLLFA  326 (463)
T ss_pred             HHhhhhH----------hhHHHHHHHHHHHHHH
Confidence            7777643          5556655555555544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.15  E-value=1.4e-09  Score=105.57  Aligned_cols=148  Identities=19%  Similarity=0.091  Sum_probs=109.8

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHH-HHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcc
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGML-INSVFAFLVPVAAGHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~-~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~  100 (455)
                      .|.+.++.|.++.+.+.+.+.+.++..++.++.|+++||+|  ..+. ......+........++. .+.+..++.|++.
T Consensus       243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  322 (406)
T PRK11551        243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFV  322 (406)
T ss_pred             HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            44555667999999999999999999999999999999999  2222 112122222222333444 6667778888888


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhh
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL  174 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~  174 (455)
                      +...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.++.  .+|+..++......++..+..++
T Consensus       323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHH
Confidence            7788889999999999999999999999999999999999999998751  34556666655555553444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.14  E-value=9.9e-10  Score=108.50  Aligned_cols=143  Identities=10%  Similarity=0.067  Sum_probs=103.9

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH--HHHHhhhhH-HHHHHHHHHhhccc
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV--PVAAGHSIL-ALSIIRFIQGLGEG  101 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~--~~~~~~~~~-~~~~~r~l~G~~~~  101 (455)
                      +++++|.|..+.++..+...++..++.++.|+++||+|   .............  ......++. ...+.+++.|+...
T Consensus       285 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  364 (467)
T PRK09556        285 AFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVF  364 (467)
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999999   2211111111111  111222344 56678888886544


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHH-HHHHHHHHHHHhHh------------cccCCCCchhHHHhhHHHHHH
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQF-GTVFSLPLSGLLSE------------YGFAGGWPSIFYVFGLVGAVW  168 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~------------~~~~~~wr~~f~~~~~~~~~~  168 (455)
                      ...........|.+|+|+||.+.|+.+...++ |..++|.+.|.+.+            .   .+|+..|++.++..++.
T Consensus       365 ~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~---~~~~~~f~~~~~~~~~~  441 (467)
T PRK09556        365 GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTL---TGWAGTFAALDIAAIGC  441 (467)
T ss_pred             hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccc---cChHHHHHHHHHHHHHH
Confidence            34334446777999999999999999988886 77999999999988            3   68999999887766664


Q ss_pred             HHHhh
Q psy3467         169 SVAFL  173 (455)
Q Consensus       169 ~i~~~  173 (455)
                      .+..+
T Consensus       442 ~~~~~  446 (467)
T PRK09556        442 ICLMA  446 (467)
T ss_pred             HHHHH
Confidence            44433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.14  E-value=1.8e-09  Score=104.27  Aligned_cols=145  Identities=11%  Similarity=0.075  Sum_probs=109.9

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      ++++|.++.+.+++.+...++..++.++.|+++||+|   ...................++. .+++.|++.+++.+...
T Consensus       244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~  323 (393)
T PRK15011        244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILG  323 (393)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999988888888899999999999999   2222211212222222233455 67788998888877777


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      +....+..|..| ++|+++.++++...++|..++|.+++.+.+.   .+|+..|++.+++.++..+ ..++.||
T Consensus       324 ~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~-~~~~~~~  392 (393)
T PRK15011        324 GIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLF-CLLRIKD  392 (393)
T ss_pred             HHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH-HHHhhcC
Confidence            777888899987 5699999999999999999999999999998   8999999887777766444 4444454

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.13  E-value=2.5e-09  Score=102.79  Aligned_cols=142  Identities=15%  Similarity=0.153  Sum_probs=108.1

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-HH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-IG--MLINSVFAFLVPVAAGHSILALSIIRFIQGLGEG  101 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~~--l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  101 (455)
                      +|...++.|.++++.++..+...++..+++++.|+++||+| ..  .....+..+.....  ..........++.|++..
T Consensus       223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~  300 (381)
T PRK03633        223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--LSQAAMAPALFILGAAGF  300 (381)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHH
Confidence            34444556888889999999999999999999999999999 22  21222222211111  122244456778888777


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHH
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      ...|...+.+.|..|+++++...+......++|..+||.+++.+.++   .+|++.|.+.+.+.++..+.
T Consensus       301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---YSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHH
Confidence            78899999999999988888888888889999999999999999998   89999999887777664433

>PRK12382 putative transporter; Provisional

Probab=99.12  E-value=1.6e-09  Score=104.52  Aligned_cols=136  Identities=20%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhc
Q psy3467          38 EQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAK  113 (455)
Q Consensus        38 ~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e  113 (455)
                      +.++..+.+.++..+++++.|++.||+|   .......+..+........++. .+++.+++.|++.+...+.....+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  329 (392)
T PRK12382        250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK  329 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3566677888888999999999999999   2222222323333333334555 77788999999998888888899999


Q ss_pred             ccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhc
Q psy3467         114 WIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYC  176 (455)
Q Consensus       114 ~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~  176 (455)
                      .+|+|+|+++.++.+....+|..++|.+.+.+.++   .||++.|.+.+.+.++..+..+++.
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999998   8999999998888777665555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.11  E-value=8.8e-10  Score=112.54  Aligned_cols=138  Identities=12%  Similarity=-0.051  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcc
Q psy3467          39 QGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKW  114 (455)
Q Consensus        39 ~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~  114 (455)
                      ..+...+..++..++.++.|.++||+|   ..+....+..++.....+.++. .+++.+++.|++.+..++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566778999999999999999999   3333333334444444444555 777788888888888899999999999


Q ss_pred             cCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467         115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE  181 (455)
Q Consensus       115 ~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~  181 (455)
                      +|.++|++++|+......+|.+++|.+++.+.+.    +.+.+|++.+++.++..++ ..++||+..
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll-~~~LPET~~  738 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLL-ALKLPDTRG  738 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH-HHhCCCCcc
Confidence            9999999999999999999999999999988764    4566777777766664444 445687643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.08  E-value=7.4e-09  Score=99.88  Aligned_cols=145  Identities=14%  Similarity=0.024  Sum_probs=113.6

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHH-HHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLV-PVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~-~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      .++.|.+..+.+++.+...++..+++++.|+++||+|  .......+..... ......++. .+++..++.|++.+...
T Consensus       233 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~  312 (390)
T PRK03545        233 QQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIG  312 (390)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcch
Confidence            4557889999999999999999999999999999999  2222222222221 122233445 77778889999887777


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      +.....+.|..| ++|++++++++....+|..+||.+++.+.++   .|+|..|++.+.+.++..+......+
T Consensus       313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH---LGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            778888888876 7899999999999999999999999999998   99999999998888776666555543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.07  E-value=3.6e-09  Score=103.50  Aligned_cols=147  Identities=12%  Similarity=0.021  Sum_probs=104.6

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------H-HHHHHHHH-HHHHHHHHhhhhH-HHHHHHHHHhhcc
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------I-GMLINSVF-AFLVPVAAGHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~-~l~~~~~~-~~~~~~~~~~~~~-~~~~~r~l~G~~~  100 (455)
                      +++|.+..+.++..+.+.++..++.++.|+++||+.      . ........ ...........+. ......+..|++.
T Consensus       272 ~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  351 (434)
T PRK11663        272 ETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFV  351 (434)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999992      1 11111111 1111111111222 3334445555543


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      ............|.+|+++|++..++.+....+|..++|.+.+.+.+.   .||+..|+..+++.++..+..+.+.+++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        352 FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI---WHWTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            323333456778999999999999999999999999999999999998   8999999999888877666555555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.05  E-value=2.6e-09  Score=105.75  Aligned_cols=153  Identities=12%  Similarity=-0.014  Sum_probs=110.2

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH-----hhh------hH-HH
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA-----GHS------IL-AL   89 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~-----~~~------~~-~~   89 (455)
                      .+...+++|.+..+.++......++..++.++.|+++||+|   .......+..+......     ..+      +. .+
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI  386 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence            34455667888888899999999999999999999999999   22222222222211111     111      23 23


Q ss_pred             HHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHH
Q psy3467          90 SIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWS  169 (455)
Q Consensus        90 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~  169 (455)
                      ....+..+.......+....++.|.+|+++|+++.++......+|..++|.+.+.+.++   .+|++.|++.+.++++..
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~  463 (481)
T TIGR00879       387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES---IGVGGVFIFFGGLNVLGL  463 (481)
T ss_pred             HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccceehhHHHHHHHHH
Confidence            33333333222334466677889999999999999999999999999999999999887   899999999988888877


Q ss_pred             HHhhhhcccCC
Q psy3467         170 VAFLLYCYEEP  180 (455)
Q Consensus       170 i~~~~~~~e~~  180 (455)
                      +..+++.||++
T Consensus       464 i~~~~~~~~~~  474 (481)
T TIGR00879       464 IFVYFFLPETK  474 (481)
T ss_pred             HHHheecccCC
Confidence            77777777654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.04  E-value=2.6e-09  Score=106.55  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=100.0

Q ss_pred             hcccC-cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH--hhhhH-HHHHHHHHHh
Q psy3467          25 VHHKD-GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA--GHSIL-ALSIIRFIQG   97 (455)
Q Consensus        25 ~~~~~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~--~~~~~-~~~~~r~l~G   97 (455)
                      +|... +++|.+..+.+++.+...++..++.++.|+++||+|   .......+..+......  ...+. .+.+..++.+
T Consensus       298 lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (496)
T PRK03893        298 LPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQ  377 (496)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            34443 478999999999999999999999999999999999   22222222222211111  11222 3444455544


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                      .......+....++.|.+|+++|++.+++.+....+|..+||.+++.+.+.   .||+..+...+...
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~---~g~~~~~~~~~~~~  442 (496)
T PRK03893        378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR---LDLGTALASLSFSL  442 (496)
T ss_pred             HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc---CChHHHHHHHHHHH
Confidence            433344567778899999999999999999999999999999999999998   89998886655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.04  E-value=7e-09  Score=99.69  Aligned_cols=144  Identities=8%  Similarity=-0.040  Sum_probs=115.2

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHH
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQ   96 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~   96 (455)
                      .....+...+|.|.++.+.|++.+...++..+..++.+++.||+|   ...++.....+......+.++. .+++.++++
T Consensus       224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~  303 (382)
T TIGR00902       224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH  303 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            333444455678999999999999999999999999999999999   2333333333333344556676 888899999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHH-hhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHH
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVY-AGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWS  169 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~  169 (455)
                      |++.+...+....++.+. |+++|++..++++ ....+|..+++.++|.+.++   .|+ ..|+..+.++++..
T Consensus       304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~---~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT---LGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHHHH
Confidence            999999999999999998 9899999999986 57889999999999999998   785 66777777776543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.03  E-value=9.1e-09  Score=98.60  Aligned_cols=140  Identities=12%  Similarity=0.120  Sum_probs=108.1

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--H-HHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--I-GMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~-~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      .+++|.++.+.+++.+........+.++.|++.||+|  . ..................++. .+.+.+++.|++.+...
T Consensus       227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  306 (375)
T TIGR00899       227 IHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILA  306 (375)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568889999999988888888889999999999999  2 222222222222222233445 67778899999888888


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      +....++.|..| ++|+++.++.+....+|..++|.+++.+.+.   .||+..|++.+++.++..+..
T Consensus       307 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       307 GIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHH
Confidence            888899999887 4667999999999999999999999999988   899999999888777644443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.02  E-value=1.2e-08  Score=98.33  Aligned_cols=154  Identities=14%  Similarity=0.038  Sum_probs=110.8

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcc
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA-GHSILALSIIRFIQGLGE  100 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~  100 (455)
                      +|...+++|.+..+.+...+.+.++..++.+..|++.||+|   .......+..+...... ..++... ..-++.|++.
T Consensus       228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~  306 (393)
T PRK09705        228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGL  306 (393)
T ss_pred             HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHhc
Confidence            33444457899999999999999999999999999999999   22222222222211111 1222211 1234668888


Q ss_pred             cCchhhHHHHHhcccC-CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCC-CCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         101 GPIVPCTHALLAKWIP-PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAG-GWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~-~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      +...+.......|..+ +++|++..+..+....++..++|.+.+++.+.   . +|+..|.+.+...++..+....+.||
T Consensus       307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI---SGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888888777778775 57899999999999999999999999999987   4 47888888777777766666777777


Q ss_pred             CCCC
Q psy3467         179 EPEA  182 (455)
Q Consensus       179 ~~~~  182 (455)
                      ++.+
T Consensus       384 ~~~~  387 (393)
T PRK09705        384 RFPQ  387 (393)
T ss_pred             cccc
Confidence            6543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.01  E-value=9e-10  Score=106.88  Aligned_cols=67  Identities=12%  Similarity=-0.026  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         220 PFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+....+.+++.+..........| .+++++|++..+.++..+.+.+++.+++++.|++.||+|||+.
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~   75 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW   75 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH
Confidence            455556666666777777777777 5566699999999999999999999999999999999999987

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.99  E-value=8.7e-09  Score=102.31  Aligned_cols=153  Identities=10%  Similarity=-0.026  Sum_probs=105.3

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH---hhhh--HHHHHHHHHHh
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA---GHSI--LALSIIRFIQG   97 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~---~~~~--~~~~~~r~l~G   97 (455)
                      |.+.++.|.+.....+......+...++.++.|+++||+|   ..+.+..+..+......   ..+.  ......-++.+
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  374 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            5555667888777778888888899999999999999999   22222222222222111   1111  12222333333


Q ss_pred             hcccC-chhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH------hcccCCCCchhHHHhhHHHHHHHH
Q psy3467          98 LGEGP-IVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS------EYGFAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus        98 ~~~~~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~------~~~~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      .+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.      +.   .+|++.|++.++++++..+
T Consensus       375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  451 (479)
T PRK10077        375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH---FHNGFSYWIYGCMGVLAAL  451 (479)
T ss_pred             HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh---ccCccHHHHHHHHHHHHHH
Confidence            33332 34678899999999999999999999999999998876665544      34   7899999998888777777


Q ss_pred             HhhhhcccCCC
Q psy3467         171 AFLLYCYEEPE  181 (455)
Q Consensus       171 ~~~~~~~e~~~  181 (455)
                      +.+++.||+++
T Consensus       452 ~~~~~~~e~~~  462 (479)
T PRK10077        452 FMWKFVPETKG  462 (479)
T ss_pred             HHHhccccCCC
Confidence            77777777643

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.99  E-value=8.7e-09  Score=101.36  Aligned_cols=150  Identities=10%  Similarity=0.048  Sum_probs=101.2

Q ss_pred             hhhccc-CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHH--h-H--H-HHHHHHHHHHHHH--HHhhhhH-HHHHH
Q psy3467          23 RRVHHK-DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY--G-I--G-MLINSVFAFLVPV--AAGHSIL-ALSII   92 (455)
Q Consensus        23 ~~~~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--G-~--~-l~~~~~~~~~~~~--~~~~~~~-~~~~~   92 (455)
                      ..+|.. +++.|.+..+.++....+.++..++.++.|+++||+  | .  . .....+..+....  ....++. ...+.
T Consensus       274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  353 (452)
T PRK11273        274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC  353 (452)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence            344443 344788888999999999999999999999999999  4 1  1 1111221111111  1112222 34445


Q ss_pred             HHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHH-HHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHH
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTV-FSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~-~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      .++.|.+..........+..|.+|+++||++.++.+....+|.. .+|.+.+.+.++   .||+..|++.+..+++..+.
T Consensus       354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~---~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH---hcchHHHHHHHHHHHHHHHH
Confidence            55555543333333445678999999999999999988888765 479999999998   89999999888777765555


Q ss_pred             hhhh
Q psy3467         172 FLLY  175 (455)
Q Consensus       172 ~~~~  175 (455)
                      ...+
T Consensus       431 ~~~~  434 (452)
T PRK11273        431 LIVV  434 (452)
T ss_pred             HHHH
Confidence            4433

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.95  E-value=1.7e-07  Score=92.94  Aligned_cols=147  Identities=18%  Similarity=0.202  Sum_probs=106.6

Q ss_pred             CcccccccchhhHHHH-HHHHHHHHhhhhhHHHHhHHh--HHHHHHHHH-HH---HHHHHHhh-hhH-HHHHHHHHHhhc
Q psy3467          29 DGSFIWTTAEQGYVLS-SFFYGYVLTQIPFGILAKKYG--IGMLINSVF-AF---LVPVAAGH-SIL-ALSIIRFIQGLG   99 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s-~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~-~~---~~~~~~~~-~~~-~~~~~r~l~G~~   99 (455)
                      .+++|.+.++.+++.+ ...++..++.++.|+++||+|  ..+....+. .+   ........ ++. .+.+.-+++.++
T Consensus       250 ~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~  329 (491)
T PRK11010        250 IRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLC  329 (491)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            3468999999999975 666899999999999999999  222211111 11   11111222 233 444456665555


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      .+...+...++..|..+++.+++..++.+...++|..+++.++|.+.+.   .||+..|.+.++++++..+... .++++
T Consensus       330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~~~~-~~~~~  405 (491)
T PRK11010        330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLLLLL-VCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence            5656677788999999999999999999999999999998899999998   8999999988888877544444 34543

>PRK03699 putative transporter; Provisional

Probab=98.95  E-value=1.7e-08  Score=97.47  Aligned_cols=144  Identities=15%  Similarity=0.157  Sum_probs=109.4

Q ss_pred             hcccC-cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhc
Q psy3467          25 VHHKD-GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLG   99 (455)
Q Consensus        25 ~~~~~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~   99 (455)
                      +|... +++|.|..+.+++.+.+.++..++.+..|+++||+|   .......+..+........++. .+.+..++.|++
T Consensus       228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  307 (394)
T PRK03699        228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFF  307 (394)
T ss_pred             HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34443 567999999999999999999999999999999999   2222222222222222233444 666677888988


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      .+...+...+...|..| +++++..+.......+|..++|.+.+.+.+.   .|++..++..+++.++..+..
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        308 SSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH---FGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH---hCchhhhhhhHHHHHHHHHHH
Confidence            88788888888888775 5677888899889999999999999999998   899999998888777654443

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.93  E-value=2.9e-08  Score=95.54  Aligned_cols=141  Identities=14%  Similarity=0.092  Sum_probs=104.3

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H---HHHH---HHHH----HHHHHHHHhhhhH-HHHHHHHHH
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I---GMLI---NSVF----AFLVPVAAGHSIL-ALSIIRFIQ   96 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~---~l~~---~~~~----~~~~~~~~~~~~~-~~~~~r~l~   96 (455)
                      ++++|.++.+.+++.+...++..++.++.|+++||+| .   ....   ..+.    ..........++. ..+....+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (399)
T TIGR00893       243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALG  322 (399)
T ss_pred             HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            4557888999999999999999999999999999999 2   1111   1111    1111111112233 444444444


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-CchhHHHhhHHHHHHHHHhh
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f~~~~~~~~~~~i~~~  173 (455)
                      +.+.+ ..+...+++.|.+|+|+|+++.++.+....+|..++|.+.+.+.+.   .| |++.|++.++..++..+..+
T Consensus       323 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       323 FFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT---TGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             Hhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC---CCchhHHHHHHHHHHHHHHHHHH
Confidence            55544 7899999999999999999999999999999999999999999887   77 99999988877766554443

>TIGR00897 2A0118 polyol permease family

Probab=98.91  E-value=4.6e-08  Score=94.74  Aligned_cols=145  Identities=14%  Similarity=0.175  Sum_probs=106.7

Q ss_pred             hhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHH-HH-HHHHHH---HHHHHH--hhhhH-HHHHHH
Q psy3467          24 RVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGM-LI-NSVFAF---LVPVAA--GHSIL-ALSIIR   93 (455)
Q Consensus        24 ~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l-~~-~~~~~~---~~~~~~--~~~~~-~~~~~r   93 (455)
                      ..|...+++|.+..+.+++.+...++..++.+..|+++||+|  ..+ .. .....+   ......  ..++. ...+..
T Consensus       244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (402)
T TIGR00897       244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA  323 (402)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            445555678999999999999999999999999999999999  211 11 111111   111111  12234 566778


Q ss_pred             HHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      ++.|++.+...+ ....+.|.. |++|++++++.+....+|..++|.+++.+.+.   .||+..+++.+++.++..++..
T Consensus       324 ~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~---~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       324 IALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF---FGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHHHH
Confidence            888888776544 455667764 57899999999999999999999999999998   8999999998887766554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.91  E-value=1.8e-08  Score=97.02  Aligned_cols=139  Identities=14%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             hcccC-cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--H-HHHHHHHHHHHH--HHHHh--hhhH-HHHHHHHH
Q psy3467          25 VHHKD-GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--I-GMLINSVFAFLV--PVAAG--HSIL-ALSIIRFI   95 (455)
Q Consensus        25 ~~~~~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~-~l~~~~~~~~~~--~~~~~--~~~~-~~~~~r~l   95 (455)
                      +|... +++|.++.+.+...+...++..++.++.|+++||+|  . ......+..+..  .....  .++. .+....++
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34433 567889999999999999999999999999999999  2 221221111111  11111  1333 66677888


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHH-HHhhHHHHHHHHHHHHHHhHhcccCCC-CchhHHHhhHHHH
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAF-VYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIFYVFGLVGA  166 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f~~~~~~~~  166 (455)
                      .|++.+...+...+++.|.+|+++|+++.++ .+....+|..++|.+++.+.++   .| |+..++......+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM---TGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH---cCcchhHHHHHHHHHH
Confidence            8998888889999999999999999999998 4566778999999999999987   66 8887776655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.86  E-value=4.4e-08  Score=96.01  Aligned_cols=148  Identities=13%  Similarity=0.049  Sum_probs=102.6

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHH---HHHHHHHHHHHh--hhhH-HHHHHHHHHhhcc
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLIN---SVFAFLVPVAAG--HSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~---~~~~~~~~~~~~--~~~~-~~~~~r~l~G~~~  100 (455)
                      ++.|.+..+.++..+.+.++..++.+..|+++||+|   ......   ....+.......  ..+. .....-+..|.+.
T Consensus       280 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  359 (438)
T TIGR00712       280 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLI  359 (438)
T ss_pred             HccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            346888999999999999999999999999999995   111111   111111111111  1122 2233344555543


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHH-HHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFG-TVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G-~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      ............|.+|+++|+++.|+.+....+| ..++|.+.+.+.++   .||...+++.....++..+..++++||+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       360 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3222333356789999999999999998877776 57899999999998   8999999988887777777777888875


Q ss_pred             C
Q psy3467         180 P  180 (455)
Q Consensus       180 ~  180 (455)
                      +
T Consensus       437 ~  437 (438)
T TIGR00712       437 K  437 (438)
T ss_pred             c
Confidence            4

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.86  E-value=9.9e-08  Score=93.27  Aligned_cols=148  Identities=14%  Similarity=0.150  Sum_probs=115.9

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H---HHHHHHHHH-HHHHHHHh--------hhhH-HHHHHH
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I---GMLINSVFA-FLVPVAAG--------HSIL-ALSIIR   93 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~---~l~~~~~~~-~~~~~~~~--------~~~~-~~~~~r   93 (455)
                      ..+++|++.++...+.-+..+...+|++++|++.||+| .   .+....+.. +.......        .++. .+.+.-
T Consensus       308 a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a  387 (477)
T PF11700_consen  308 ATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA  387 (477)
T ss_pred             HHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH
Confidence            35689999999999999999999999999999999999 2   222222221 22222221        2333 888899


Q ss_pred             HHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      ++.|+..|..++...++.+|+.|+++.+..+|++....-....+||++-+.+.+..  .+-|+.+....++.++..++. 
T Consensus       388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t--g~~r~g~~~l~~lf~~gl~ll-  464 (477)
T PF11700_consen  388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT--GSQRYGFLFLLVLFLIGLILL-  464 (477)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999999999999999999999999998872  347888887777766644443 


Q ss_pred             hhccc
Q psy3467         174 LYCYE  178 (455)
Q Consensus       174 ~~~~e  178 (455)
                      +.+++
T Consensus       465 ~~v~~  469 (477)
T PF11700_consen  465 FFVDV  469 (477)
T ss_pred             hhccc
Confidence            44443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.85  E-value=6.4e-09  Score=99.32  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         220 PFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .++...+..+..+..........|.++++++|.|+.+.+++.+...+++.+++++.|++.||+|||+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~   69 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT   69 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence            34566677777777777788888987777799999999999999999999999999999999999976

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.83  E-value=6.2e-08  Score=93.77  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=99.1

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHH-HHHHH-HHHHHHHHhhhhH-HHHHHHHHHhhcccCc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGML-INSVF-AFLVPVAAGHSIL-ALSIIRFIQGLGEGPI  103 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~-~~~~~-~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~  103 (455)
                      .+++|.+..+.+++.+...++..++.++.|+++||+|  ..+. ..... ..........++. .+.+..++.|+..+..
T Consensus       266 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (405)
T TIGR00891       266 KADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGI  345 (405)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccc
Confidence            3467899999999999999999999999999999999  2221 21111 1111112222334 5566667777777777


Q ss_pred             hhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-CchhHHH
Q psy3467         104 VPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIFYV  160 (455)
Q Consensus       104 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f~~  160 (455)
                      .+....++.|.+|+++|++++++.+....+|..++|.+.+.+.++   .| |+..+..
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~---~g~~~~~~~~  400 (405)
T TIGR00891       346 WGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR---LDEYGTALAS  400 (405)
T ss_pred             hhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh---ccccchhHHh
Confidence            788889999999999999999999999999999999999999998   67 7776654

>KOG4686|consensus

Probab=98.83  E-value=4.8e-08  Score=85.07  Aligned_cols=148  Identities=18%  Similarity=0.234  Sum_probs=105.8

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccCch
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  104 (455)
                      +++.+|+|+...+.+.+....-.++.+++.|.++||+|   ..+....+..+..-..-+.+.+.-..+-.+.|+..+...
T Consensus       291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllA  370 (459)
T KOG4686|consen  291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLA  370 (459)
T ss_pred             HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHH
Confidence            47789999999999999999999999999999999999   222222222222111111111244566677888887776


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh-hHHHHHHHHHhhhhc
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF-GLVGAVWSVAFLLYC  176 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~-~~~~~~~~i~~~~~~  176 (455)
                      ......++...|+++.|++.+..+...++|..+.|++++.+.+..+...|--.|.+. +.+++. .+...+.+
T Consensus       371 cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~-svgil~~~  442 (459)
T KOG4686|consen  371 CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALT-SVGILFYL  442 (459)
T ss_pred             HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHH-HHHHHhhe
Confidence            767788899999999999999999999999999999999999874333455555543 334444 33334443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.81  E-value=1.1e-07  Score=94.08  Aligned_cols=146  Identities=16%  Similarity=0.101  Sum_probs=118.7

Q ss_pred             hhccc-CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhh
Q psy3467          24 RVHHK-DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGL   98 (455)
Q Consensus        24 ~~~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~   98 (455)
                      .+|.+ ++++|.+....|++.+.+.+|..+|++..+.+.+|++   ..........+.....++.++. ..++.-++.|+
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~  319 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGA  319 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            34444 3568899999999999999999999999999999988   3333334444444555566666 77778899999


Q ss_pred             cccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467          99 GEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus        99 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      +.....+...+.+.+..|++.||+.+++++.....+..+|..+.|.+.+.   .|-+..+.+.++..++..++.
T Consensus       320 ~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  320 AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---FGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHH
Confidence            99988888999999999999999999999999999999999999999998   899999887776555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.79  E-value=1.1e-07  Score=92.90  Aligned_cols=132  Identities=14%  Similarity=0.033  Sum_probs=88.6

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH-hh-hhH-HHHHHHHHHhh
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA-GH-SIL-ALSIIRFIQGL   98 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~-~~-~~~-~~~~~r~l~G~   98 (455)
                      +|...++.|.++.+.+...+...++..++.++.|+++||+|   .......+..+...... .. +.. .+....+..+.
T Consensus       254 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (426)
T PRK12307        254 LPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMA  333 (426)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            34444456888889999999999999999999999999999   21111111111111111 11 122 22222222223


Q ss_pred             cccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHH
Q psy3467          99 GEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFY  159 (455)
Q Consensus        99 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~  159 (455)
                      +.....+....++.|.+|+++|++++|+......+|..++|.+.+.+.+.   .|.....+
T Consensus       334 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~---~g~~~~~~  391 (426)
T PRK12307        334 TNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT---MGLGAALT  391 (426)
T ss_pred             hcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc---ccHHHHHH
Confidence            33333456667889999999999999999999999999999999999887   66554433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.75  E-value=4.5e-07  Score=84.77  Aligned_cols=147  Identities=16%  Similarity=0.169  Sum_probs=112.4

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHH-HHHHHhhhhH-HHHHHHHHHhhcc
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFL-VPVAAGHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~-~~~~~~~~~~-~~~~~r~l~G~~~  100 (455)
                      |.+++..|.|.+.++++.-.|.++..+|+.+.|+++|| +   .......+..+. ..+....++. ..++.-++-|++.
T Consensus       236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~  314 (394)
T COG2814         236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF  314 (394)
T ss_pred             HHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            34456678899999999999999999999999999999 7   222221222222 2222333444 6666666788887


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      ....+....-+++ ..||.+..+.+++....++|..+|..+++.+.++   .|++...+..+++.++..++.+...+
T Consensus       315 ~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         315 SPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA---LGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             hhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777777777 4468999999999999999999999999999999   99999999999988886666655433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.74  E-value=3e-07  Score=88.43  Aligned_cols=135  Identities=19%  Similarity=0.104  Sum_probs=102.5

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCc
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPI  103 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~  103 (455)
                      ..+|.|.++.+.|.+.+...++..+..++.|++.||+|   ..........+........++. .+++..++.|++.+..
T Consensus       231 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  310 (382)
T PRK11128        231 YWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVC  310 (382)
T ss_pred             HHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            33568889999999999999999999999999999999   2222222222222333445666 7788999999999988


Q ss_pred             hhhHHHHHhcccCCCcchhHHHHHH-hhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467         104 VPCTHALLAKWIPPTERSRLGAFVY-AGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus       104 ~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+....++.+. +++++++..+... ....+|..+||.++|.+.+.   .|+ ..++..+.+.++
T Consensus       311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~---~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH---LGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHH
Confidence            88888888886 5677788888886 55678889999999999998   776 466666655544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.74  E-value=4.3e-07  Score=87.59  Aligned_cols=142  Identities=11%  Similarity=-0.018  Sum_probs=102.0

Q ss_pred             hcccCcccccccchhhHHHHHHHH-HHHHhhhhhHHHHhHHh--HHHHHHHHHH-H-HHHHH--Hh---hhhH-HHHHHH
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFY-GYVLTQIPFGILAKKYG--IGMLINSVFA-F-LVPVA--AG---HSIL-ALSIIR   93 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~G--~~l~~~~~~~-~-~~~~~--~~---~~~~-~~~~~r   93 (455)
                      .+...+|.|.++++.|++.+.... ...++.++.|++.||+|  ..+....+.. . .....  ..   ..+. ......
T Consensus       231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (390)
T TIGR02718       231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS  310 (390)
T ss_pred             hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence            344455679999999999888764 66778899999999999  2222111111 1 11111  10   1122 344555


Q ss_pred             HHHhhcccCchhhHHHHHhcccCC-CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHH
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPP-TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWS  169 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~  169 (455)
                      .+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+.   .|++..|+..+.+.++..
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHH
Confidence            666777777778888888788776 7899999999999999999999999999998   899999988777666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.73  E-value=1.8e-07  Score=89.10  Aligned_cols=123  Identities=20%  Similarity=0.262  Sum_probs=98.6

Q ss_pred             cccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHhhc
Q psy3467          26 HHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHS-IL-ALSIIRFIQGLG   99 (455)
Q Consensus        26 ~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~-~~-~~~~~r~l~G~~   99 (455)
                      |...++ +|.++.+.+++.+...++..++.++.+++.||+|   ..........+........+ +. .+.+..++.|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  314 (365)
T TIGR00900       235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG  314 (365)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence            344333 7889999999999999999999999999999999   22222222222222333333 25 778889999999


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      .+...+...+++.|..|+|+|++..++.+....+|..++|.+++.+.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998775

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.70  E-value=2.9e-07  Score=85.30  Aligned_cols=148  Identities=12%  Similarity=0.103  Sum_probs=115.4

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      .+++|++.++..++.-...+...+|+++.|++.||+|   +.+.+..+..+.+....+.... .+.++-.+.|...|..+
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            4589999999999999999999999999999999999   3333333333333333333333 78888899999999999


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      ..+.++.++..|++|-++.+|+++.....+..+||.+-+.+.+..  .+-|..+....++..+ .++.+...|+.
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT--g~~r~g~~~i~vll~i-Gl~~L~~v~~~  431 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT--GSSRAGVLSIIVLLLI-GLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh--cchhhHHHHHHHHHHh-hHhhEEeecCC
Confidence            999999999999999999999999999999999999999988752  4567766655554444 34444455543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.70  E-value=4e-07  Score=89.28  Aligned_cols=114  Identities=16%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh-hhH-HHHHHHHHHhhcccCchhhHHH
Q psy3467          35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH-SIL-ALSIIRFIQGLGEGPIVPCTHA  109 (455)
Q Consensus        35 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~-~~~-~~~~~r~l~G~~~~~~~~~~~~  109 (455)
                      ++.+.+++.++..++..++.+++++++||+|   ....+..+..+........ ++. .+.+..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556788888889999999999999999999   2222222222222222222 334 6677788899999989999999


Q ss_pred             HHhcccC-------CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         110 LLAKWIP-------PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       110 ~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      +++|..|       ++++|...++.+....+|..+++.+.+.+.+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999875       45689999999999999999999999999876

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.70  E-value=5.3e-07  Score=87.18  Aligned_cols=140  Identities=10%  Similarity=0.120  Sum_probs=106.3

Q ss_pred             cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhH
Q psy3467          32 FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCT  107 (455)
Q Consensus        32 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~  107 (455)
                      .+.+..+.|.+.++..+...++.+..|++.||+|   ...+...+..+........++. .++..++++|++........
T Consensus       249 ~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  328 (396)
T TIGR00882       249 PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGC  328 (396)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667899999999999999999999999999   2323233233322232334455 77888999999877666667


Q ss_pred             HHHHhcccCCCcchhHHHH-HHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhh
Q psy3467         108 HALLAKWIPPTERSRLGAF-VYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL  174 (455)
Q Consensus       108 ~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~  174 (455)
                      ..+..|..+++.|+...+. .+....+|..+++.++|.+.+.   .||+..|.+.+++.++..++..+
T Consensus       329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888877666 6788999999999999999998   89999999988888775555433

>PRK09952 shikimate transporter; Provisional

Probab=98.70  E-value=7.1e-07  Score=87.41  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=99.5

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH---HHH-hhhhH-HHHHHHHHHhhcc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP---VAA-GHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~---~~~-~~~~~-~~~~~r~l~G~~~  100 (455)
                      ++++|.++.....+..+..+...++.++.|+++||+|   .......+..+...   ... ..++. .+++..++.|++.
T Consensus       278 ~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  357 (438)
T PRK09952        278 TQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAH  357 (438)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            4567777776666666667777888999999999999   22222111111111   111 11223 4445567778887


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHH-hhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVY-AGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      +...+...+++.|.+|+|.|+...++.. .+..+|..++|.+.+.+.+... .+|+..+...++..++..+.. +.++|+
T Consensus       358 ~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~-~~~~~~  435 (438)
T PRK09952        358 DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTA-LLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence            7778888999999999999998888854 4455899999999999977410 358888887777766644444 445653

>TIGR00895 2A0115 benzoate transport

Probab=98.69  E-value=1.8e-07  Score=90.28  Aligned_cols=121  Identities=20%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H-HHHHHHHHHHHHH-HHHhhhhH-HHHHHHHHHhhcc
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I-GMLINSVFAFLVP-VAAGHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~-~l~~~~~~~~~~~-~~~~~~~~-~~~~~r~l~G~~~  100 (455)
                      .|...+++|.+..+.++..+...++..++.++.|+++||+| . ......+..+... .....++. ..++..++.|++.
T Consensus       273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  352 (398)
T TIGR00895       273 LPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFV  352 (398)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            44556678889999999999999999999999999999999 2 2222222222111 11112344 6778889999999


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHh
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL  145 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l  145 (455)
                      +...+...+++.|.+|+++|+++.++......+|..++|.++|.+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       353 NGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999999999999999999999999999875

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.69  E-value=2.1e-07  Score=89.08  Aligned_cols=127  Identities=14%  Similarity=0.095  Sum_probs=95.9

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---H---HHHHHHHHHHHHHHHHh--hhhH-HHHHHHHHHhhc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---I---GMLINSVFAFLVPVAAG--HSIL-ALSIIRFIQGLG   99 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~---~l~~~~~~~~~~~~~~~--~~~~-~~~~~r~l~G~~   99 (455)
                      .+++|.++.+.++..+.+.++..++.++.|+++||.+   .   .................  ..+. ...+..++.|+.
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  323 (379)
T TIGR00881       244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFL  323 (379)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999864   1   11111111111111111  2233 556667777776


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhH
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIF  158 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f  158 (455)
                      .....+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+.   .|||+.|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f  379 (379)
T TIGR00881       324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG---FGWAGAF  379 (379)
T ss_pred             HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh---hcccccC
Confidence            6666667778899999999999999999999999999999999999998   8998764

>PRK10504 putative transporter; Provisional

Probab=98.69  E-value=2.3e-07  Score=91.89  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=91.4

Q ss_pred             ccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh---hhhH-HHHHHHHHHhhcccCc
Q psy3467          31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG---HSIL-ALSIIRFIQGLGEGPI  103 (455)
Q Consensus        31 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~---~~~~-~~~~~r~l~G~~~~~~  103 (455)
                      .+|.++.+.++......++..++.++.|+++||+|   ....+..+..+.......   .++. .+.+.-++.|++.+..
T Consensus       291 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  370 (471)
T PRK10504        291 GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTR  370 (471)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence            46888899999999999999999999999999999   222222222222221111   1223 4455677888888888


Q ss_pred             hhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         104 VPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       104 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      .+....++.+..|+|+|+.+.++.+....+|..+|+.+++.+.+.
T Consensus       371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999988765

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.68  E-value=1.8e-07  Score=92.50  Aligned_cols=140  Identities=11%  Similarity=0.039  Sum_probs=90.2

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H-------HH--HHHHHHHHHHHHHHhhhhH-HHHHHHHHHh
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I-------GM--LINSVFAFLVPVAAGHSIL-ALSIIRFIQG   97 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~-------~l--~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G   97 (455)
                      .+++|.+..+.+.+.+++.++..++.++.|+++||+| .       ..  ....+..+........++. ..++.-++.+
T Consensus       280 ~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~  359 (476)
T PLN00028        280 YDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFS  359 (476)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999987 1       11  1111111111222223333 3344444555


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      ++.+...+...+++.|.. +++|+...++...+..+|..++|.+.+ ....   .+|+..|++.+++.++..++.+
T Consensus       360 ~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~---~~y~~~f~~~~~~~~i~~~~~~  430 (476)
T PLN00028        360 IFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSS---YSTETGISLMGVMIIACTLPVA  430 (476)
T ss_pred             HHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCC---ccHhhHHHHHHHHHHHHHHHHH
Confidence            544444444555566654 578999999998877777777776543 1122   5799999998877777544443

>PRK10054 putative transporter; Provisional

Probab=98.68  E-value=3.7e-07  Score=88.13  Aligned_cols=147  Identities=14%  Similarity=-0.000  Sum_probs=108.5

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh-hhhH-HHHHHHHHHhhcccCch
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG-HSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~-~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      ++.+.+....+++.+.+.+.....+++.|++.||++   .......+..+....... .++. .+++..++.|+|.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            455667778888888888888888899999999998   222222222222222222 2344 66778899999988888


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCC
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEP  180 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~  180 (455)
                      |.....+.|..|++.|++..+..+ ...+|..+||.+++.+.++   .|-+..|++.+...++..++...-.+|+|
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT---LPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH---cChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            888999999999999999988765 5668999999999999998   88888888877666665555554444444

>PRK15075 citrate-proton symporter; Provisional

Probab=98.68  E-value=6e-07  Score=87.90  Aligned_cols=128  Identities=11%  Similarity=0.032  Sum_probs=86.8

Q ss_pred             hcccC-cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH--H--HHHhhhhH-HHHHHHHH
Q psy3467          25 VHHKD-GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV--P--VAAGHSIL-ALSIIRFI   95 (455)
Q Consensus        25 ~~~~~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~--~--~~~~~~~~-~~~~~r~l   95 (455)
                      .|... +++|.+..+.++....+.++..++.+..|+++||+|   ..+..........  .  .....++. ......++
T Consensus       261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
T PRK15075        261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW  340 (434)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            44433 347888888999999999999999999999999999   2222111111111  1  11112233 34444555


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHh-hHHHHHHHHHHHHHHhHhcccCCCCc
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYA-GAQFGTVFSLPLSGLLSEYGFAGGWP  155 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~g~~i~~~l~~~~~~~~wr  155 (455)
                      .|++.+...+....++.|.+|+++|+...++... +..++..++|.+.+.+.++   .|++
T Consensus       341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~---~g~~  398 (434)
T PRK15075        341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV---TGDK  398 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh---cCCc
Confidence            5666666666677889999999999999998644 4445677899999999887   6754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.67  E-value=4.2e-07  Score=87.89  Aligned_cols=144  Identities=14%  Similarity=0.071  Sum_probs=100.2

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhc
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLG   99 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~   99 (455)
                      +|...+|.+.++.+.+++.+...++...+..+.+++.|| ++   .......+..+........++. .+.+..++.|++
T Consensus       231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g  310 (400)
T PRK11646        231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIG  310 (400)
T ss_pred             hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            344444444467888998888888777667667777765 55   2223333333333333344555 666677888888


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCC-chhHHHhhHHHHHH
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGW-PSIFYVFGLVGAVW  168 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w-r~~f~~~~~~~~~~  168 (455)
                      .+...|...+++.|..|+++||+.+++.+....+|..+||.+++.+.++.+..+. +..+++.++.+++.
T Consensus       311 ~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~  380 (400)
T PRK11646        311 SIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLIT  380 (400)
T ss_pred             HHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999999886321233 45555545555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.63  E-value=1.5e-06  Score=84.41  Aligned_cols=146  Identities=12%  Similarity=-0.009  Sum_probs=101.8

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH-----hhhhH-HHHHHHHHHhhc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA-----GHSIL-ALSIIRFIQGLG   99 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~-----~~~~~-~~~~~r~l~G~~   99 (455)
                      .+++|.++.+.++......++..++.++.|+++||+|   ..........+......     ..++. .+++.-++.|++
T Consensus       243 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g  322 (406)
T PRK15402        243 ISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFG  322 (406)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            4567888889999888888899999999999999999   22222222221111111     12234 667788889998


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      .+...+.......+. ++++||+..+..+....+|..+|+.+++.+.+.   .++....+..++.+++.......+.++
T Consensus       323 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK15402        323 IGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG---GGNGLFNLFNLANGLLWLLLVRIFLKD  397 (406)
T ss_pred             HHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC---CchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            887766666655443 458999999999999999999999999998776   677666666555555544444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.63  E-value=9e-08  Score=88.56  Aligned_cols=207  Identities=14%  Similarity=0.153  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHH
Q psy3467         220 PFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA  299 (455)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  299 (455)
                      .++.-.+.....++..+.+....+. +++++|+|+.|.+++...+.+...+.+++.|.+.||+|.|+.          ..
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~-i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~----------~~   83 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVF-IKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKW----------TI   83 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-hccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHH----------HH
Confidence            4444444444444444434444444 446699999999999999999999999999999999999965          33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--hH----HhcCCCCceEEEEEecCcccccccCCCCCccccccccCCCccccccccccc
Q psy3467         300 FLYQVLSFGMIVSSALMIWKG--LM----VLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGR  373 (455)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (455)
                      .+.....+-.+..+....+..  .+    ...|..|-..            ....++...-+|....+.  ....+..||
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasF------------av~m~~~s~~fP~~~qG~--AlGI~g~GN  149 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASF------------AVGMPNASFFFPKEKQGL--ALGIAGAGN  149 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccccee------------hcccccccccCChhhhhH--HHHHhcccc
Confidence            443333333333222222110  11    1122222111            111122222222111110  000011222


Q ss_pred             -----ccccccceeeE-E-----------------------EEeccCCCCCCC----C-CcHHHHHhhHHHHHHHHHHhc
Q psy3467         374 -----ARGFLPYVGMV-T-----------------------IYMNEYPKFKSP----P-VPWKDIVSSLPFWAILIAHMG  419 (455)
Q Consensus       374 -----~~g~~~~~~~~-~-----------------------~~~~~~~~~~~~----~-~p~~~~~~~~~~~~~~~~~~~  419 (455)
                           .....|..... +                       -.+++.+..+..    . .+.+.+++++.+|.+.+-|+.
T Consensus       150 ~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~  229 (417)
T COG2223         150 LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFA  229 (417)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHH
Confidence                 11111111100 0                       012333331111    1 235668899999999999999


Q ss_pred             chhhHHHHHhhhhHHHHHhhccccccceeeec
Q psy3467         420 QNYGYETLMTELPTFMKQVLHFNIKEHGSVRV  451 (455)
Q Consensus       420 ~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~~~  451 (455)
                      .-=.+-.+-.|+|.|+++++++|..+.|.+++
T Consensus       230 tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~  261 (417)
T COG2223         230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAF  261 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence            98899999999999999999999998876654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.63  E-value=1.9e-06  Score=83.22  Aligned_cols=141  Identities=13%  Similarity=0.010  Sum_probs=107.0

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H-HHHHHHHHHHH-HHHHHhhhhH-HHHHHHHHHhhccc
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I-GMLINSVFAFL-VPVAAGHSIL-ALSIIRFIQGLGEG  101 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~-~l~~~~~~~~~-~~~~~~~~~~-~~~~~r~l~G~~~~  101 (455)
                      |...+++|.+..+.+++.+.+.++..++.++.+++.||.+ . .+....+.... .......++. .+.+..++.|++.+
T Consensus       241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~  320 (394)
T PRK10213        241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFA  320 (394)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3344567899999999999999999999999999999977 2 22222221221 1222223344 66778899999999


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHH
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      ...+...+.+.+..| +++++..+......++|..+|+.++|.+.+.   .|++..++..+.+.++..+
T Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~---~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        321 LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN---IGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHHH
Confidence            889999989999886 6677888888888999999999999999998   8899888887766555333

>KOG2504|consensus

Probab=98.62  E-value=2.8e-07  Score=90.76  Aligned_cols=148  Identities=19%  Similarity=0.259  Sum_probs=123.5

Q ss_pred             hhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-----HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHh
Q psy3467          24 RVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-----IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQG   97 (455)
Q Consensus        24 ~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G   97 (455)
                      .++...++.+.++.+.+.+.++..+...++.++.|.++|+..     ...+...+..+....+.+.+++ .+...-.+.|
T Consensus       320 ~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG  399 (509)
T KOG2504|consen  320 YLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFG  399 (509)
T ss_pred             HHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            345566689999999999999999999999999999999988     3333333334444566777888 9999999999


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      ++.|........++.|+.+.++-..+.|+......++..+||.+++.+.+..  .+|...|+..+...++...+.+
T Consensus       400 ~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t--g~Y~~~f~~~g~~~~~s~~~~~  473 (509)
T KOG2504|consen  400 FCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT--GNYDHAFYFCGLCFLLSAVLLL  473 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc--CCeeeehhhcChHHHHHHHHHH
Confidence            9999888888899999999999999999999999999999999999887761  3499999999888877554443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.61  E-value=3.3e-05  Score=78.44  Aligned_cols=144  Identities=19%  Similarity=0.199  Sum_probs=104.5

Q ss_pred             ccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh---HHHHHHHHHHHHHHHHHhh--------hhH-HHHHHHHHHh
Q psy3467          31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG---IGMLINSVFAFLVPVAAGH--------SIL-ALSIIRFIQG   97 (455)
Q Consensus        31 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G---~~l~~~~~~~~~~~~~~~~--------~~~-~~~~~r~l~G   97 (455)
                      .+|.++++...+...+....-+...++|.++|+ +|   ..+.+..+..++..+.+..        ... ..+++-.+..
T Consensus        17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia   96 (654)
T TIGR00926        17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA   96 (654)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence            478888888888888888888999999999996 56   3333333333333322221        011 3566777788


Q ss_pred             hcccCchhhHHHHHhcccCCC---cchhHHHHHHhhHHHHHHHHHHHHHHhHhcc----cCCCCchhHHHhhHHHHHHHH
Q psy3467          98 LGEGPIVPCTHALLAKWIPPT---ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG----FAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~----~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      +|.|..-|...+...|-++++   +|-....++..+.++|..+++.+.+.+.+..    ...+|...|.+.++..++..+
T Consensus        97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l  176 (654)
T TIGR00926        97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI  176 (654)
T ss_pred             hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence            899999999999999999754   3677888889999999999999998886430    013699999988887777555


Q ss_pred             Hhhh
Q psy3467         171 AFLL  174 (455)
Q Consensus       171 ~~~~  174 (455)
                      +...
T Consensus       177 vf~~  180 (654)
T TIGR00926       177 VFMA  180 (654)
T ss_pred             HHHH
Confidence            5443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.58  E-value=8.1e-07  Score=98.02  Aligned_cols=137  Identities=19%  Similarity=0.206  Sum_probs=103.9

Q ss_pred             Ccccccccc-hhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCc
Q psy3467          29 DGSFIWTTA-EQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPI  103 (455)
Q Consensus        29 ~~~~~~s~~-~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~  103 (455)
                      .+++|.+.. +.+++.+...++..+++++.|+++||++   ...++..+..+.........+. .+++..++.|++.+..
T Consensus       260 ~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  339 (1146)
T PRK08633        260 KEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLF  339 (1146)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            456788888 9999999999999999999999999998   2222222222333333333455 7778889999999988


Q ss_pred             hhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467         104 VPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus       104 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+...+++.+..|+++||+++++.+....+|..+++.+++.+...+  .++...+++.+.+.++
T Consensus       340 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        340 IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG--LSPAGLFYLIALVTLI  401 (1146)
T ss_pred             hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999988888887765421  3555566665554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.55  E-value=2.1e-07  Score=90.40  Aligned_cols=149  Identities=17%  Similarity=0.197  Sum_probs=111.1

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-------HHHHHHHHHH-HHHH---HHHh-hhhH-HHHHH
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-------IGMLINSVFA-FLVP---VAAG-HSIL-ALSII   92 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-------~~l~~~~~~~-~~~~---~~~~-~~~~-~~~~~   92 (455)
                      +-+++++|+++++.....++..+.. ...++.|.++|.+-       .+++...+.. ....   .... ..+. ...+.
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~   92 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL   92 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence            3456789999999999888888776 45788999999764       3333222222 1111   1111 2234 56666


Q ss_pred             HHHHhhcccCchhhHHHHHhcccC--CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHH
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWIP--PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      -++..+|.+.....+-+++.|...  +++||...+.......+|.+++..++|.+.+.   .+.|+.|.+.+++..+..+
T Consensus        93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~~~  169 (433)
T PF03092_consen   93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLMLI  169 (433)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHHHH
Confidence            788888888889999999999984  34578888888899999999999999999998   8999999998888877666


Q ss_pred             Hhhhhccc
Q psy3467         171 AFLLYCYE  178 (455)
Q Consensus       171 ~~~~~~~e  178 (455)
                      ...+..+|
T Consensus       170 ~~~~~~~e  177 (433)
T PF03092_consen  170 VALFLLEE  177 (433)
T ss_pred             HHHHhhhh
Confidence            66666666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.54  E-value=3.5e-06  Score=82.49  Aligned_cols=146  Identities=16%  Similarity=0.049  Sum_probs=86.8

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH--HH--HHhhhhH-HHHHHHHHHhhcc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV--PV--AAGHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~--~~--~~~~~~~-~~~~~r~l~G~~~  100 (455)
                      .+++|.+..+.++..++..++..+++++.|+++||+|   ..+....+..+..  ..  ....++. ..+..-.+.+...
T Consensus       271 ~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (432)
T PRK10406        271 VNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIV  350 (432)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            3557888888999999888888999999999999999   2222111111111  11  1111222 2222222222233


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHH-HHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQF-GTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      +...+....+.+|++|+|.|+.+.|+.+...++ .....|.+.+.+...   ..|...++..+...++..+. .+++++
T Consensus       351 ~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~---g~~~~~~~~~~~~~~i~~~~-~~~l~~  425 (432)
T PRK10406        351 SFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI---GMETAFFWYVTLMAVVAFLV-SLMLHR  425 (432)
T ss_pred             HHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHH-HHHhhh
Confidence            333455678899999999999999998865443 344477777766443   34655666555555553333 334443

>TIGR00896 CynX cyanate transporter

Probab=98.53  E-value=1.8e-06  Score=82.08  Aligned_cols=125  Identities=14%  Similarity=0.093  Sum_probs=90.3

Q ss_pred             hhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhc
Q psy3467          24 RVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLG   99 (455)
Q Consensus        24 ~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~   99 (455)
                      .+|...+|.|.+..+.+.+.+...++..++.++.|+++||++    .......+..++........+......-.+.|++
T Consensus       219 ~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  298 (355)
T TIGR00896       219 WLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLG  298 (355)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence            344445567889999999999999999999999999999995    2222222222222222222222112245678999


Q ss_pred             ccCchhhHHHHHhcccC-CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         100 EGPIVPCTHALLAKWIP-PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      .+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.++
T Consensus       299 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       299 QGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             hhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888887776554 46678889998888899999999999999886

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.53  E-value=1.8e-06  Score=86.30  Aligned_cols=137  Identities=18%  Similarity=0.028  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh----hhH-HHHHHHHHHhhcccCchhhHHHHHhccc
Q psy3467          44 SSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH----SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWI  115 (455)
Q Consensus        44 s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~----~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~  115 (455)
                      .+..++..++.++.+.++||+|   ..+....+..+........    +.. .+...-+...++.....+....+.+|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3444566678889999999999   2222222222222111111    111 1111111111222223456677789999


Q ss_pred             CCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhccc-------CCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467         116 PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF-------AGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE  181 (455)
Q Consensus       116 ~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~-------~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~  181 (455)
                      |.+.|+++.++.+....+|.+++|.+.+.+.+.+.       ..+++..|++.+++.++..+ ..+++||++.
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~  493 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKG  493 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH-HheEeccCCC
Confidence            99999999999999999999999999998876310       02345677777777766544 4467788654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.52  E-value=1e-06  Score=97.07  Aligned_cols=137  Identities=19%  Similarity=0.143  Sum_probs=102.5

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHH-----------------Hhhh
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVA-----------------AGHS   85 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~-----------------~~~~   85 (455)
                      .+.+|.+..+.|++.+.+.++..+++++.|+++||.+      ...++.++..+.....                 ...+
T Consensus       253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  332 (1140)
T PRK06814        253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR  332 (1140)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence            3457889999999999999999999999999998766      1222222211111111                 0012


Q ss_pred             hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHH
Q psy3467          86 IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLV  164 (455)
Q Consensus        86 ~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~  164 (455)
                      +. .+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.+....  .+.+..+++.+..
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~~~~~~~~~~~  410 (1140)
T PRK06814        333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSIPWIILFIALA  410 (1140)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHH
Confidence            33 66778889999999999999999999999999999999999999999999999999887431  4566666655554


Q ss_pred             HHH
Q psy3467         165 GAV  167 (455)
Q Consensus       165 ~~~  167 (455)
                      .++
T Consensus       411 ~~~  413 (1140)
T PRK06814        411 NLI  413 (1140)
T ss_pred             HHH
Confidence            443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.52  E-value=0.00011  Score=69.33  Aligned_cols=250  Identities=13%  Similarity=0.128  Sum_probs=156.9

Q ss_pred             cccccchhh-HHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhh
Q psy3467          32 FIWTTAEQG-YVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPC  106 (455)
Q Consensus        32 ~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~  106 (455)
                      .|+++.|+. -+.-+..-.+....++...+.|..|   +.++......+.-.+.-+.++. .+-+..+.-|++.+ ...+
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHH
Confidence            778777764 4555666677788889999999999   3333333333333334445677 99999999999877 5788


Q ss_pred             HHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCC---C
Q psy3467         107 THALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEA---H  183 (455)
Q Consensus       107 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~---~  183 (455)
                      -.+++--..|+++--++.+....+..+|..++.+++..+...+. .+.+...++......+ ..+..+++|..++.   +
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~~isl~~~~~-a~~~~~fLP~~~~S~~f~  191 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLNYISLASVSL-ALLIALFLPMPKRSLFFH  191 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH-HHHHHHHcCCCCccccee
Confidence            88999999999999999999999999999999999998877411 2444554454433333 44445566665432   1


Q ss_pred             CCCChhHH------HHHhhhcccc--c-CCCCCC-----------CCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhh
Q psy3467         184 PNIAEDER------KYIMSSVWGL--A-GVASSP-----------PVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELP  243 (455)
Q Consensus       184 ~~~~~~~~------~~~~~~~~~~--~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
                      +..++++.      +...+..++.  + ++.+..           ..++++..++|.++...+-+.+...++..+..+..
T Consensus       192 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ  271 (412)
T PF01770_consen  192 RKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQ  271 (412)
T ss_pred             ccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence            11111000      0000000000  0 000000           12234556788888877877888888888888777


Q ss_pred             HHHHHH--hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy3467         244 TFMKQV--LHFNIKENGTLSALPYLAMWIFSMFASFIADSMIT  284 (455)
Q Consensus       244 ~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  284 (455)
                      ...++.  -+-+..-+|.+-....+.+.++.+..|++..++.+
T Consensus       272 ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~  314 (412)
T PF01770_consen  272 SLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR  314 (412)
T ss_pred             HHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH
Confidence            777663  13334456777777777777777888887444443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.52  E-value=1.8e-06  Score=76.18  Aligned_cols=157  Identities=8%  Similarity=0.056  Sum_probs=105.3

Q ss_pred             HHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHH-----HHhh--hhH-
Q psy3467          19 TKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPV-----AAGH--SIL-   87 (455)
Q Consensus        19 ~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~-----~~~~--~~~-   87 (455)
                      ...+..-|++++.+|+|.+|...+.+.-.+|..+ .++.|.+.||+|   +.+++......+-..     ....  .++ 
T Consensus        19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~   97 (250)
T PF06813_consen   19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW   97 (250)
T ss_pred             cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence            3344444667888999999999999999999987 588999999999   333333333222221     1111  233 


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+.+..++.|.+.+.....+.....+.+| ++||++.++.-....++..+-..+...+.+.   ..-+. +.+.+....+
T Consensus        98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~f-ll~la~~~~~  172 (250)
T PF06813_consen   98 LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSF-LLFLAVLPAV  172 (250)
T ss_pred             HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHH-HHHHHHHHHH
Confidence            66667777777776666777777778887 6899999999999999888777776666553   22333 3344444444


Q ss_pred             HHHHhhhhcccCCC
Q psy3467         168 WSVAFLLYCYEEPE  181 (455)
Q Consensus       168 ~~i~~~~~~~e~~~  181 (455)
                      ..++..+++++.|+
T Consensus       173 v~l~~~~~vr~~~~  186 (250)
T PF06813_consen  173 VCLVAMFFVRPVPP  186 (250)
T ss_pred             HHHHHhhheeccCC
Confidence            34555556665544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.51  E-value=0.00015  Score=70.48  Aligned_cols=250  Identities=11%  Similarity=0.064  Sum_probs=138.2

Q ss_pred             cCccccc-----ccchhhHHHHHHHHHHHHh-hhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh--------------
Q psy3467          28 KDGSFIW-----TTAEQGYVLSSFFYGYVLT-QIPFGILAKKYG---IGMLINSVFAFLVPVAAGH--------------   84 (455)
Q Consensus        28 ~~~~~~~-----s~~~~~~~~s~~~l~~~~~-~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~--------------   84 (455)
                      +++.+.+     +.+...++-+...+..++. .++.+++++|++   +.-.....+.....+.++.              
T Consensus        29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~  108 (472)
T TIGR00769        29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALA  108 (472)
T ss_pred             hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHH
Confidence            4555544     3357888888887877776 899999999999   1111111111111111100              


Q ss_pred             ------------------hhHHHHHHHHHHhhcccCchh-hHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHh
Q psy3467          85 ------------------SILALSIIRFIQGLGEGPIVP-CTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL  145 (455)
Q Consensus        85 ------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l  145 (455)
                                        +++...+......+-...... .-..+++|.++++|-.|..+++..+.++|..+++.+..++
T Consensus       109 ~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       109 DKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              112222333344443344444 6778999999999999999999999999999999998887


Q ss_pred             Hhcc-----cCCCCc----hhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhh
Q psy3467         146 SEYG-----FAGGWP----SIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIV  216 (455)
Q Consensus       146 ~~~~-----~~~~wr----~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (455)
                      .+..     ....|.    ..+.+.++...+ .+...+.+.+....+++..+.++     + .+.++.+....+..+.++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-----~-~~k~k~k~~~~es~k~i~  261 (472)
T TIGR00769       189 SKLRASLGPGVDGWHVSLKNLMVIVICSGLA-IILLYWWVNRNVLTDPRSYNPAL-----K-EKKVKPKMSTMESLKFLV  261 (472)
T ss_pred             HHhhhccccccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccccchhh-----c-cccCCCCCCHHHHHHHHH
Confidence            6310     012342    233333333333 33333333322221111111110     0 000111122345567788


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccc-c---hhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         217 SSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKE-N---GTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      |+|.++.+++...+.....+.+...--...++.+- |+.+ .   |.+....++...+.+++.+++.+|+|-+
T Consensus       262 ~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       262 SSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99988888887777766666665544445555442 3322 2   3333444555556666778888888865

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.51  E-value=4.9e-06  Score=78.74  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=121.1

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHH-HHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchh
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGML-INSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVP  105 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~-~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~  105 (455)
                      ++-+.++...|++.++..+.-.+.-.+..++.+|+|  ..++ ...+..+=...++++++. .+.+.+.+.|+..+....
T Consensus       252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv  331 (412)
T PF01306_consen  252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV  331 (412)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            344556677999999999999999999999999999  3333 333334444566777788 999999999999999999


Q ss_pred             hHHHHHhcccCCCcchhHHHHH-HhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCC
Q psy3467         106 CTHALLAKWIPPTERSRLGAFV-YAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAH  183 (455)
Q Consensus       106 ~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~  183 (455)
                      ....++++.+|+|..++...+. +.+..+|..+.+.++|.+.++   .|.+..|++.+.+.+...++..+.+++++++.
T Consensus       332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~---~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR---IGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh---cCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence            9999999999988888888774 688999999999999999998   89999999999998888888888887765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.51  E-value=5.6e-06  Score=80.22  Aligned_cols=138  Identities=22%  Similarity=0.240  Sum_probs=91.1

Q ss_pred             cCcccccccchhhHHHHHHH-HHHHHhhhhhHHHHhHHh---HHHHHHHHHHHH---HHHHHhh-hhH-HHHHHH----H
Q psy3467          28 KDGSFIWTTAEQGYVLSSFF-YGYVLTQIPFGILAKKYG---IGMLINSVFAFL---VPVAAGH-SIL-ALSIIR----F   94 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~---~~~~~~~-~~~-~~~~~r----~   94 (455)
                      +.+++|.++++.+++.+... .+..++.++.|++.||+|   ..........+.   ....... ++. .+.+.-    +
T Consensus       236 l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  315 (402)
T PRK11902        236 LIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENL  315 (402)
T ss_pred             HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            44568999999999987654 568899999999999999   221222211111   1111222 333 344433    4


Q ss_pred             HHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467          95 IQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus        95 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      ..|++.+...+....++.+.+|.++    .++.+...++|..+++.+++.+.++   .||+..|.+.+.++++..++.
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~---~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        316 CGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEA---YGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHH
Confidence            5556666666777777777776544    4555556677887777789999998   999999999888877744443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.50  E-value=5.1e-06  Score=77.15  Aligned_cols=129  Identities=12%  Similarity=-0.006  Sum_probs=94.4

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccCchhh
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGM-LINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPC  106 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  106 (455)
                      +++|.++++.++..+.+..+..+|.+..+++.||+|  ..+ ....+..+........+.......-++.|++.+..+|.
T Consensus       171 ~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       171 HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPT  250 (310)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999  222 22222222222222222232234556889999999999


Q ss_pred             HHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467         107 THALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus       107 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      ..+...+..|+ +.+.+.++. ....+|..+.|.+.|.+.+.   .|-+..|++..+
T Consensus       251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~v~~~  302 (310)
T TIGR01272       251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFALPVP  302 (310)
T ss_pred             HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHHHHHH
Confidence            99999998874 455666665 55678999999999999987   788888875433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.49  E-value=6.2e-06  Score=79.58  Aligned_cols=138  Identities=16%  Similarity=0.018  Sum_probs=100.2

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      ++.+|.++.+.|++.+...++..++++..+++.||.+   ....+... ..........++. ...+.-++.|++.+...
T Consensus       233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~  311 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFV  311 (393)
T ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence            4457889999999999999999999999999999988   22222222 1222222333444 56677788999988888


Q ss_pred             hhHHHHHhcccCCCc-chhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHH
Q psy3467         105 PCTHALLAKWIPPTE-RSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      +...+.+.|..|+|. +|++.++.+...++|..++..+.+.+..    .|-|..+.+.+...++...+
T Consensus       312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK----LGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHH
Confidence            888888888766554 7999999999999999999999987754    46566655544433333333

>TIGR00898 2A0119 cation transport protein

Probab=98.48  E-value=4.4e-06  Score=83.60  Aligned_cols=134  Identities=13%  Similarity=-0.021  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh-hh--HHHHHHHHHHhhcccCchhhHHHHHhccc
Q psy3467          42 VLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH-SI--LALSIIRFIQGLGEGPIVPCTHALLAKWI  115 (455)
Q Consensus        42 ~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~-~~--~~~~~~r~l~G~~~~~~~~~~~~~i~e~~  115 (455)
                      ...+..+....+.++.+.++||+|   .......+..+........ +.  ....+.-++.+++.+...+....+..|.+
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            334556677788899999999999   2222222222222222221 12  24445556666777777888899999999


Q ss_pred             CCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467         116 PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE  181 (455)
Q Consensus       116 ~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~  181 (455)
                      |++.|+.++++.+....+|.+++|.+.+ +.+    .++...+.+.+...++..+. .+++||+..
T Consensus       440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~-~~~lpet~~  499 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGIL-TLFLPETKG  499 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHH-HHcCcCCCC
Confidence            9999999999999999999999999998 444    46677788777777664444 456787643

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.46  E-value=6.2e-06  Score=79.32  Aligned_cols=143  Identities=14%  Similarity=0.074  Sum_probs=93.4

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHH-HhhhhH-HHHHHHHHHhhcccC
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVA-AGHSIL-ALSIIRFIQGLGEGP  102 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~-~~~~~~-~~~~~r~l~G~~~~~  102 (455)
                      ..+.+|.++++.+++.+...++..++.++.|++.||+|   .......+..+..... ...++. ..++..++.+++...
T Consensus       226 ~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~  305 (382)
T PRK10091        226 MMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFA  305 (382)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            34457889999999999999999999999999999999   2222222222222111 122333 455556666665544


Q ss_pred             chhhHH-HHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhh
Q psy3467         103 IVPCTH-ALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLL  174 (455)
Q Consensus       103 ~~~~~~-~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~  174 (455)
                      ..+... ....+..++|.++..  ..+....+|..+||.+++.+.+..  .+|++.+...+.++.+.......
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        306 LSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             hhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHHHHH
Confidence            444334 344444444555544  346678899999999999998841  68999999887776664444333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.44  E-value=1.2e-07  Score=96.51  Aligned_cols=51  Identities=12%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             HHHHHhhHHHHHHHHHHhcchhhHHHHHhhhhHHHHHhhccccccceeeec
Q psy3467         401 WKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRV  451 (455)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~~~  451 (455)
                      ++.+++++.+|...++.++....++.+.+|+|+|+++++|++..+.|++..
T Consensus       323 ~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~  373 (633)
T TIGR00805       323 IKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIG  373 (633)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhh
Confidence            456899999999999999999999999999999999999999999887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.42  E-value=3.9e-07  Score=88.52  Aligned_cols=51  Identities=4%  Similarity=0.004  Sum_probs=45.0

Q ss_pred             cHHHHHhhHHHHHHHHHHhcchhhHHHHHhhhhHHHHHhhccccccceeee
Q psy3467         400 PWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVR  450 (455)
Q Consensus       400 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~~  450 (455)
                      +++++++++++|...+..++.+..++.+.+++|.|++|.+|+|..+.|+..
T Consensus       210 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~  260 (413)
T PRK15403        210 DFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQ  260 (413)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHH
Confidence            567789999999999998888888999999999999999999988877653

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.41  E-value=1.3e-05  Score=77.02  Aligned_cols=151  Identities=17%  Similarity=0.205  Sum_probs=107.4

Q ss_pred             cccCcccc-cccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHH-HHHHhh-hhH-HHH----HHHHH
Q psy3467          26 HHKDGSFI-WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLV-PVAAGH-SIL-ALS----IIRFI   95 (455)
Q Consensus        26 ~~~~~~~~-~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~-~~~~~~-~~~-~~~----~~r~l   95 (455)
                      +..-+|.| .+.+..+.+.++..++-.+.-...+++..|+|  ..+....+..+.- ...+.. ++. ...    ....+
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~l  310 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLL  310 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Confidence            33345556 66777788888888888899999999999999  3333333333332 222222 332 333    33557


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHh-hHHHHHHHHHHHHHHhHhcccCCC------CchhHHHhhHHHHHH
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYA-GAQFGTVFSLPLSGLLSEYGFAGG------WPSIFYVFGLVGAVW  168 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~g~~i~~~l~~~~~~~~------wr~~f~~~~~~~~~~  168 (455)
                      +|+..+..+.....++.+..|++.|+++.++++. ...+|..+|..++|++.++   .|      |...+.+.+.+.++.
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~---~g~~~~~~~~~~~~v~a~~~~~~  387 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA---FGARGMFDWSAVFLVFAVMALVI  387 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999886 4689999999999999986   44      444555666666665


Q ss_pred             HHHhhhhcccC
Q psy3467         169 SVAFLLYCYEE  179 (455)
Q Consensus       169 ~i~~~~~~~e~  179 (455)
                      .++...+.||+
T Consensus       388 ~~~f~~~fk~~  398 (400)
T PF03825_consen  388 LVLFVILFKPK  398 (400)
T ss_pred             HHHHHhhccCC
Confidence            55555555553

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.40  E-value=1.5e-06  Score=82.22  Aligned_cols=122  Identities=16%  Similarity=0.198  Sum_probs=93.8

Q ss_pred             HHHhhhhhcc-cCcccccc-cchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHH---HHHHHHHHHHhhhhH-H
Q psy3467          18 NTKLTRRVHH-KDGSFIWT-TAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINS---VFAFLVPVAAGHSIL-A   88 (455)
Q Consensus        18 ~~~l~~~~~~-~~~~~~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~---~~~~~~~~~~~~~~~-~   88 (455)
                      .......+|. ..+++|.+ ..+.++..+...+...++.++.|+++||+|   .......   +...........++. .
T Consensus       222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (352)
T PF07690_consen  222 FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVW  301 (352)
T ss_dssp             HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHH
T ss_pred             HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3334455555 37888999 789999999999999999999999999998   2222122   222222222223334 6


Q ss_pred             HHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHH
Q psy3467          89 LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSL  139 (455)
Q Consensus        89 ~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~  139 (455)
                      .+..-++.|++.+...+....++.|..|+|+|+++.++.+...++|..+||
T Consensus       302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            677888899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.37  E-value=5.2e-06  Score=81.83  Aligned_cols=146  Identities=14%  Similarity=-0.011  Sum_probs=106.1

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH----------hhhhH-HHHHHHHH
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA----------GHSIL-ALSIIRFI   95 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~----------~~~~~-~~~~~r~l   95 (455)
                      +++|.++.+.|.+.+...++..++....+++.+|++   .......+..+......          ..++. ..+..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            578999999999999999999999999999999999   22222222222221110          01223 55566788


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-----CchhHH--HhhHHHHHH
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-----WPSIFY--VFGLVGAVW  168 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-----wr~~f~--~~~~~~~~~  168 (455)
                      .+++.+........++.+..|++++|...++.+...++|..+++.+++.+.++   .|     .+..+.  +...+.-+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~---~g~~~~~~~~~~~~i~i~~~~~l~  437 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET---IGITCDNSNNLWLLILGHSLAPLL  437 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcccccchHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999999999999886   44     443333  333332233


Q ss_pred             HHHhhhhccc
Q psy3467         169 SVAFLLYCYE  178 (455)
Q Consensus       169 ~i~~~~~~~e  178 (455)
                      .+...+++|+
T Consensus       438 ~l~~~~llP~  447 (468)
T TIGR00788       438 PLPLLHLLPR  447 (468)
T ss_pred             HHHHHHhCCC
Confidence            3444457786

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=98.36  E-value=1.5e-05  Score=78.41  Aligned_cols=120  Identities=12%  Similarity=-0.052  Sum_probs=85.5

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh--hhH-HHHHHHHHHhhcccC
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH--SIL-ALSIIRFIQGLGEGP  102 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~--~~~-~~~~~r~l~G~~~~~  102 (455)
                      ++.+|.++...++......++..++.++.++++||+|   ....+..+..+........  ++. .+.+..++.|+|.+.
T Consensus       256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~  335 (448)
T PRK09848        256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV  335 (448)
T ss_pred             eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence            3446666555555555556778889999999999999   3332332222222222222  233 566678889999999


Q ss_pred             chhhHHHHHhcccCCC-------cchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         103 IVPCTHALLAKWIPPT-------ERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       103 ~~~~~~~~i~e~~~~~-------~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ..+...++.+|..|++       ++|...+..+....+|..+++.+.+.+.+.
T Consensus       336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988754       358899999999999999999999888764

>KOG2533|consensus

Probab=98.35  E-value=5.5e-07  Score=87.81  Aligned_cols=57  Identities=9%  Similarity=0.050  Sum_probs=49.6

Q ss_pred             CCCcHHHHHhhHHHHHHHHHHhcchhhHHHHHhhhhHHHHHhhccccccceeeeccc
Q psy3467         397 PPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVRVTS  453 (455)
Q Consensus       397 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~~~~p  453 (455)
                      ++..+++.++++.+|...++++|..-..+++.+|+|.|+++..|+|-.+...++...
T Consensus       262 ~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~  318 (495)
T KOG2533|consen  262 KWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPY  318 (495)
T ss_pred             CHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchH
Confidence            345667889999999999999999999999999999999997789888887776543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.34  E-value=6.5e-06  Score=82.02  Aligned_cols=120  Identities=13%  Similarity=0.107  Sum_probs=95.0

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHH---HHhhhhH-HHHHHHHHHhhccc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPV---AAGHSIL-ALSIIRFIQGLGEG  101 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~---~~~~~~~-~~~~~r~l~G~~~~  101 (455)
                      ++.+|.|+.+.|+....+.++..++.++.|++.||+|   ....+..+..+....   ....++. ......++.|+|.+
T Consensus       287 q~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g  366 (495)
T PRK14995        287 QFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAA  366 (495)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHH
Confidence            4457889999999999999999999999999999999   222222222222211   1112233 55678899999999


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ...+.....+.+..|+++++.+.++.+...++|..+|+.+.+.+.+.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        367 SALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998999999999999999999999999999999999999988653

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.32  E-value=1.1e-05  Score=74.57  Aligned_cols=144  Identities=29%  Similarity=0.476  Sum_probs=106.0

Q ss_pred             hhhcccCccccccc--chhhHHHHHHHHHHHHhhhhhHHHHhHHh-H--HHHHHHHHHHHHHHHHhhhh--H-HHHHHHH
Q psy3467          23 RRVHHKDGSFIWTT--AEQGYVLSSFFYGYVLTQIPFGILAKKYG-I--GMLINSVFAFLVPVAAGHSI--L-ALSIIRF   94 (455)
Q Consensus        23 ~~~~~~~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~--~l~~~~~~~~~~~~~~~~~~--~-~~~~~r~   94 (455)
                      +..+...++++.+.  .+.++..+.+.++..+++++.|.++||+| .  ...................+  . .+++.|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRL  102 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            34444444555444  47899999999999999999999999998 2  22222111222233333333  5 9999999


Q ss_pred             HHhhcccCchhhHHHHHhcccCC-CcchhHHHHHHh-hHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467          95 IQGLGEGPIVPCTHALLAKWIPP-TERSRLGAFVYA-GAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        95 l~G~~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      ++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+||+.|.........
T Consensus       103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         103 LQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence            99999999999999999999987 689999999888 5888999999888777654 336899977766655544

>TIGR00901 2A0125 AmpG-related permease

Probab=98.29  E-value=7.7e-06  Score=77.79  Aligned_cols=110  Identities=15%  Similarity=0.008  Sum_probs=79.9

Q ss_pred             hhhcccCcccccccchhhHHHHHHH-HHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh---h--------hhH
Q psy3467          23 RRVHHKDGSFIWTTAEQGYVLSSFF-YGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG---H--------SIL   87 (455)
Q Consensus        23 ~~~~~~~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~---~--------~~~   87 (455)
                      ..++...+++|.++++.+.+.++.. ++..++.+++|++.||+|   .......+..+.......   .        ++.
T Consensus       230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (356)
T TIGR00901       230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL  309 (356)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence            3344444558899999998888766 678899999999999999   222222222222121111   1        233


Q ss_pred             -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHH
Q psy3467          88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQ  132 (455)
Q Consensus        88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~  132 (455)
                       .+....++.+++.+...+...+++.|.+|+|+||+.+++.+...+
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence             677788999999999999999999999999999999999887654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.27  E-value=1e-05  Score=80.49  Aligned_cols=119  Identities=16%  Similarity=0.150  Sum_probs=93.5

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH--h--hhhH-HHHHHHHHHhhccc
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA--G--HSIL-ALSIIRFIQGLGEG  101 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~--~--~~~~-~~~~~r~l~G~~~~  101 (455)
                      +.+|.++.+.++......++..++.++.|++.||+|   ....+..+..+......  .  ..+. .+....++.|++.+
T Consensus       284 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~  363 (485)
T TIGR00711       284 QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMG  363 (485)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999   22222222222222222  1  1233 56667889999998


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ...+.......|..|+++|+.+.++.+....+|..+|+.+.+.+.++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       364 CFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877788888889999999999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=98.26  E-value=3e-05  Score=75.88  Aligned_cols=134  Identities=14%  Similarity=0.052  Sum_probs=97.4

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccCchh
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVP  105 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  105 (455)
                      ++++|.++.+.++....+.++..++.++.|++.||+|   +......+...........++...+..-.+.|++.+..+|
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P  366 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYP  366 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999   2222222222222222222332234556788999999999


Q ss_pred             hHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-CchhHHHhhHHHHH
Q psy3467         106 CTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIFYVFGLVGAV  167 (455)
Q Consensus       106 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f~~~~~~~~~  167 (455)
                      ...+...|..+ |+.+.+.++... ..+|..++|.+.+.+.+.   .| -|..|++..+..+.
T Consensus       367 ~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~---~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        367 TIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA---AGNIPTAELIPALCFAV  424 (438)
T ss_pred             HHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHh---ccchHHHHHHHHHHHHH
Confidence            99999999986 456777777764 446888888888888887   66 78888765544443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.21  E-value=5.1e-05  Score=72.88  Aligned_cols=113  Identities=14%  Similarity=0.094  Sum_probs=80.4

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH---HHHHhh--hhH-HHHHHHHHHhhc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV---PVAAGH--SIL-ALSIIRFIQGLG   99 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~---~~~~~~--~~~-~~~~~r~l~G~~   99 (455)
                      .+++|.++.+.+++.+...++..++.++.|++.||+|   ..........+..   ......  +.. .+....++.|++
T Consensus       234 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  313 (385)
T TIGR00710       234 IDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIG  313 (385)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3568889999999999999999999999999999999   2222222222111   111111  233 556667888998


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHH-HHHHHHHHHH
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQ-FGTVFSLPLS  142 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~-~G~~~g~~i~  142 (455)
                      .+...+.......|..| ++|+++.++.+.... +|...++.++
T Consensus       314 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       314 NSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899899876 789999999876654 4566666554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11043 putative transporter; Provisional

Probab=98.21  E-value=5.1e-05  Score=73.50  Aligned_cols=122  Identities=15%  Similarity=0.087  Sum_probs=87.6

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--H----HHHHHHHHHHHHHHHHh--hhhH-HHHHHHHHH
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--I----GMLINSVFAFLVPVAAG--HSIL-ALSIIRFIQ   96 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~----~l~~~~~~~~~~~~~~~--~~~~-~~~~~r~l~   96 (455)
                      |...+++|.++.+.++......++..++....+++.||+|  .    ......+..........  .++. .++....+.
T Consensus       227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (401)
T PRK11043        227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM  306 (401)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            4444567889999999888888899999999999999999  1    11111222111111111  2233 455666778


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      |++.+...+.......|..| ++|+++.++.+.....+...++.+.+.+.+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            88888888888888878775 6899999999988888888888888877553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.17  E-value=5.9e-05  Score=74.61  Aligned_cols=136  Identities=18%  Similarity=0.085  Sum_probs=102.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhH----HHHhH-Hh-----HHHHHHHHHHHHHHHHHh---------hhhH-HHHHHHHHHhh
Q psy3467          39 QGYVLSSFFYGYVLTQIPFG----ILAKK-YG-----IGMLINSVFAFLVPVAAG---------HSIL-ALSIIRFIQGL   98 (455)
Q Consensus        39 ~~~~~s~~~l~~~~~~~~~g----~l~dr-~G-----~~l~~~~~~~~~~~~~~~---------~~~~-~~~~~r~l~G~   98 (455)
                      .+++.+++.+...+.+++..    ++.|| .+     ...++..+..++......         ..+. +++...++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            67889999999998888855    55664 22     112222222222222211         2355 88999999999


Q ss_pred             cccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467          99 GEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus        99 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      |.....|...+++.|..|++.||+.++++.....+|..+++.+.......   .+|.+.|...++..++..++.++..|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP---QGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998877665   68898888888777776666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.17  E-value=9.9e-05  Score=73.12  Aligned_cols=114  Identities=15%  Similarity=0.023  Sum_probs=82.9

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHH-----HhhhhH-HHHHHHHHHhhcccCchh
Q psy3467          35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVA-----AGHSIL-ALSIIRFIQGLGEGPIVP  105 (455)
Q Consensus        35 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~-----~~~~~~-~~~~~r~l~G~~~~~~~~  105 (455)
                      +++..+++.+...++..++.+++++++||+|   ..+....+..+.....     ...++. .+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777899999999999999999   2222222222111111     112334 666777888999999999


Q ss_pred             hHHHHHhcccC-------CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         106 CTHALLAKWIP-------PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       106 ~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ...++++|..|       .++.|...+......-+|..+++.+.+.+.+.
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999976       33456688999999999999999999988764

>KOG3764|consensus

Probab=98.15  E-value=3e-06  Score=77.83  Aligned_cols=158  Identities=16%  Similarity=0.149  Sum_probs=118.1

Q ss_pred             HHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-----HHHHHHHHHHHHHHHHHhhhh
Q psy3467          13 VSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-----IGMLINSVFAFLVPVAAGHSI   86 (455)
Q Consensus        13 ~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----~~l~~~~~~~~~~~~~~~~~~   86 (455)
                      ..++....+-|.++. ..+.+..+.++.|+..--..+.+.++..+.|.++||++     ..+.+.....+.+....+.++
T Consensus       281 ~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~  360 (464)
T KOG3764|consen  281 FSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS  360 (464)
T ss_pred             hccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh
Confidence            334444455565555 34556666778888888889999999999999999999     222333333344445566778


Q ss_pred             H-HHHHHHHHHhhcccCchhhHHHHHhcccCCC------cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHH
Q psy3467          87 L-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPT------ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFY  159 (455)
Q Consensus        87 ~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~------~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~  159 (455)
                      + .+.+-++..|++.+...........+..+++      --|...++...++.+|.++||.+++.+.+.   .|.+|.-.
T Consensus       361 ~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~---iGF~wl~~  437 (464)
T KOG3764|consen  361 IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA---IGFEWLMT  437 (464)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee---hhHHHHHH
Confidence            8 8888888888888877776666666666543      346788999999999999999999999998   99999999


Q ss_pred             HhhHHHHHHHHHhh
Q psy3467         160 VFGLVGAVWSVAFL  173 (455)
Q Consensus       160 ~~~~~~~~~~i~~~  173 (455)
                      +.++..++..-+..
T Consensus       438 iig~~n~iyapvl~  451 (464)
T KOG3764|consen  438 IIGILNLIYAPVLL  451 (464)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98888877554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.14  E-value=9.9e-05  Score=71.27  Aligned_cols=118  Identities=12%  Similarity=0.078  Sum_probs=89.3

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-HH---HHHHHHHHHHHHHHHh--hhhH-HHHHHHHHHhhcccC
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-IG---MLINSVFAFLVPVAAG--HSIL-ALSIIRFIQGLGEGP  102 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~~---l~~~~~~~~~~~~~~~--~~~~-~~~~~r~l~G~~~~~  102 (455)
                      +.+|.++.+.+++......+..+++++.+++.||++ ..   +.......+.......  ..+. .+....++.|++.+.
T Consensus       236 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  315 (394)
T PRK11652        236 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGM  315 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            347888999999999999999999999999999998 11   1111111111111111  1223 667778999999998


Q ss_pred             chhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         103 IVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       103 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ..+...+...|..| ++++...++.+...++|..+++.+++.+.+.
T Consensus       316 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        316 LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            99999999999886 6889999999999999999999999887554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.14  E-value=7.5e-05  Score=72.07  Aligned_cols=129  Identities=9%  Similarity=-0.072  Sum_probs=75.0

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      ++++|.++.+.+.+.+...++..++.++.+++.||+|   ..........+........+.. ..+..-.+.+.|.+...
T Consensus       231 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  310 (392)
T PRK10473        231 MEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGF  310 (392)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888889999999999999999999999999999   2222222222222222222222 23333333333333332


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                      +.  ....+..|.++|+   +..+....++..+++.+++++.+.   .|+.....+.+.+.
T Consensus       311 ~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~  363 (392)
T PRK10473        311 GV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAV---LGISAWNMLIGILI  363 (392)
T ss_pred             HH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHH
Confidence            22  2334455555543   333444567777778888777776   67665555444433

>PRK09669 putative symporter YagG; Provisional

Probab=98.12  E-value=7e-05  Score=73.58  Aligned_cols=111  Identities=8%  Similarity=0.031  Sum_probs=79.8

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH-H-HHhhhhH-HHHHHHHHHhhcccCchhhHHHHH
Q psy3467          38 EQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP-V-AAGHSIL-ALSIIRFIQGLGEGPIVPCTHALL  111 (455)
Q Consensus        38 ~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~-~-~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i  111 (455)
                      ..+.+.....+...++.+++++++||+|   ..........+... . ....++. .+++..++.|++.+...+...+++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666677888889999999999999   22222221221111 1 1112344 677788899999999999999999


Q ss_pred             hcccCC-------CcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         112 AKWIPP-------TERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       112 ~e~~~~-------~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      +|..|.       ++.|...+..+....+|..+|+.+++.+.+.
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999862       2346677888889999999999999998775

>KOG3762|consensus

Probab=98.09  E-value=8.7e-06  Score=77.71  Aligned_cols=141  Identities=17%  Similarity=0.071  Sum_probs=111.8

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCch
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      .+|.+-.++..|........+-.+.-++.+++.+|+|   +..++.+...+=.......+|. +.+-..+++|+..+..+
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW  477 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW  477 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH
Confidence            4556667778888888888899999999999999999   2222222222222223334455 88999999999999999


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHh-hHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYA-GAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      .+..+++++..||+-|..+-++.+. ...+|-.+|.+|++.+.+.   .+=|..|+..++.+++..+..
T Consensus       478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999975 5788999999999999998   888999998888777644444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.08  E-value=0.00014  Score=66.43  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=109.1

Q ss_pred             HHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy3467          19 TKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVPVAAGHSILALSIIRF   94 (455)
Q Consensus        19 ~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~~~~~~~~~~~~~~r~   94 (455)
                      ..+-.=+|++-.|-|+|..+.|++.+...+.....++....+++|..    ..+.......+......+.+....+..-+
T Consensus       225 Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~  304 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWAL  304 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            33444567788889999999999999999999999999999999877    22222222222222121222222222249


Q ss_pred             HHhhcccCchhhHHHHHhcccCCC-cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          95 IQGLGEGPIVPCTHALLAKWIPPT-ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        95 l~G~~~~~~~~~~~~~i~e~~~~~-~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      +.|+|.|..++.+...+.+..++. +-++..+..|....+=...||.+.|++-+.  ..+|+..........++..+..+
T Consensus       305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa--~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA--TGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh--cCChHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988643 444555555665555567889999999775  26899999888777777666655


Q ss_pred             hh
Q psy3467         174 LY  175 (455)
Q Consensus       174 ~~  175 (455)
                      ..
T Consensus       383 ~a  384 (395)
T COG2807         383 RA  384 (395)
T ss_pred             hc
Confidence            54

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.05  E-value=4.8e-05  Score=75.70  Aligned_cols=139  Identities=12%  Similarity=0.002  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHHHhhhhh----HHHHhHHh---HHHHHHHHHHHHHHHHHhhhh---------H-HHHHHHHHHhhccc
Q psy3467          39 QGYVLSSFFYGYVLTQIPF----GILAKKYG---IGMLINSVFAFLVPVAAGHSI---------L-ALSIIRFIQGLGEG  101 (455)
Q Consensus        39 ~~~~~s~~~l~~~~~~~~~----g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~---------~-~~~~~r~l~G~~~~  101 (455)
                      .++..++..+...+..++.    +++.||++   ...++..+..++........+         . +++..+++.|+|+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            6677788887777777766    66666655   222222222222222211111         3 78889999999999


Q ss_pred             CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc----c---CCCCchhHHHhhHHHHHHHHHhhh
Q psy3467         102 PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG----F---AGGWPSIFYVFGLVGAVWSVAFLL  174 (455)
Q Consensus       102 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~----~---~~~wr~~f~~~~~~~~~~~i~~~~  174 (455)
                      ...|...+++.+..|++.||+.+|.+.....+|..++..+........    .   ..+.++.|...++..++..++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888777777777766664322100    0   013567777777766654444444


Q ss_pred             hcc
Q psy3467         175 YCY  177 (455)
Q Consensus       175 ~~~  177 (455)
                      ..|
T Consensus       478 ~~~  480 (500)
T PRK09584        478 TAP  480 (500)
T ss_pred             HHH
Confidence            333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.05  E-value=0.00021  Score=68.54  Aligned_cols=114  Identities=12%  Similarity=-0.045  Sum_probs=72.6

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHH---HHHHHHHHHh-hhhH-HHHHHHHHHhhcc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSV---FAFLVPVAAG-HSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~---~~~~~~~~~~-~~~~-~~~~~r~l~G~~~  100 (455)
                      .+++|.++++.++..+...++..++.++.|++.||+|   .......+   ..+....... ..+. ...+.-.+.+.+.
T Consensus       222 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (377)
T PRK11102        222 IELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCV  301 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4457889999999999999999999999999999999   22211111   1111111111 1122 3333444444444


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhh-HHHHHHHHHHHHH
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAG-AQFGTVFSLPLSG  143 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~-~~~G~~~g~~i~~  143 (455)
                      +...+.....+.|..| ++|+++.+..... ..+|..+++.++.
T Consensus       302 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        302 SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555666677778765 8899999887653 4566666666654

>KOG0569|consensus

Probab=98.04  E-value=0.00015  Score=70.35  Aligned_cols=151  Identities=15%  Similarity=0.059  Sum_probs=106.0

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH---HH----HhhhhH---HHHHHHH
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP---VA----AGHSIL---ALSIIRF   94 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~---~~----~~~~~~---~~~~~r~   94 (455)
                      +-++-|++..+..++.........+..+.+..+.||+|   ..+.......+...   ..    ...+++   ..+++.+
T Consensus       296 i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~  375 (485)
T KOG0569|consen  296 IFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIF  375 (485)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            44567888999999999999999999999999999999   22222222222211   11    111112   1223333


Q ss_pred             HHhhcccC-chhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhh
Q psy3467          95 IQGLGEGP-IVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus        95 l~G~~~~~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~  173 (455)
                      +-.++.+. ..|...-+.+|++|++.|..+.+......-+...+-...-..+.+.   .|- +.|+...+++++..+..+
T Consensus       376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~---~g~-~~filF~i~~~~~~i~~~  451 (485)
T KOG0569|consen  376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV---IGP-YVFILFVIPLAIFLIYLY  451 (485)
T ss_pred             HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-hhhHHHHHHHHHHHHHHH
Confidence            33322222 3588899999999999999999999988888887777766666665   554 788888888888889999


Q ss_pred             hhcccCCCC
Q psy3467         174 LYCYEEPEA  182 (455)
Q Consensus       174 ~~~~e~~~~  182 (455)
                      +.+||++.+
T Consensus       452 ~~lPETkgr  460 (485)
T KOG0569|consen  452 RYLPETKGR  460 (485)
T ss_pred             HhCcccCCC
Confidence            999998644

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.02  E-value=0.00021  Score=69.34  Aligned_cols=130  Identities=18%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH--HHHhh----hhH-HHHH----HHHHHhhcccCchhhHH
Q psy3467          43 LSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP--VAAGH----SIL-ALSI----IRFIQGLGEGPIVPCTH  108 (455)
Q Consensus        43 ~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~--~~~~~----~~~-~~~~----~r~l~G~~~~~~~~~~~  108 (455)
                      ..+..+...+..+++|+++||+|   +.+.......+...  .....    .+. .+.+    .-+..|+|.|    ..+
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng----svf  367 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG----STF  367 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch----HHH
Confidence            44556778899999999999999   22222222222211  11111    122 3333    3344455555    445


Q ss_pred             HHHhcccCC---------------------CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467         109 ALLAKWIPP---------------------TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus       109 ~~i~e~~~~---------------------~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .++.+++|+                     ++-|.+.|+......+|..+.|.+-+...+..  .++...|+...+..++
T Consensus       368 k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~--g~~~~~~~~~~~~~~~  445 (462)
T PRK15034        368 QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT--GSPVGAMKVFLIFYIV  445 (462)
T ss_pred             HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc--CCcHHHHHHHHHHHHH
Confidence            556666653                     15667788888889998888886666555431  5688888888888877


Q ss_pred             HHHHhhhhccc
Q psy3467         168 WSVAFLLYCYE  178 (455)
Q Consensus       168 ~~i~~~~~~~e  178 (455)
                      +.++.+++.-+
T Consensus       446 ~~~~~w~~y~r  456 (462)
T PRK15034        446 CVLLTWLVYGR  456 (462)
T ss_pred             HHHHHHHHhcc
Confidence            77777665433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.92  E-value=0.0028  Score=60.98  Aligned_cols=167  Identities=9%  Similarity=0.011  Sum_probs=107.2

Q ss_pred             CCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc----cCCCCCCCCChhHH
Q psy3467         116 PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY----EEPEAHPNIAEDER  191 (455)
Q Consensus       116 ~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~----e~~~~~~~~~~~~~  191 (455)
                      +++.+.+.++.+.-.=-+..+++|++.|.+.+.   .+.+....+.+...++..++=++++.    ..|+-+.+.++++.
T Consensus       143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~---~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~  219 (432)
T PF06963_consen  143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTF---ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSES  219 (432)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccc
Confidence            345667777777777778899999999999887   78888888888887776665554442    22221111111110


Q ss_pred             HHHhhhcccccC------------CCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchh
Q psy3467         192 KYIMSSVWGLAG------------VASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGT  259 (455)
Q Consensus       192 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~  259 (455)
                      +..++.....++            .-++...+|+.-+++|.+ ...+...+.++..-++......|+... |+++.+.|.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vf-las~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi  297 (432)
T PF06963_consen  220 ESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVF-LASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGI  297 (432)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHH
Confidence            000000000000            001123455566666544 444555555665656677788888885 999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         260 LSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .-+...+.++.+.+...++.+|+|..|.
T Consensus       298 ~R~~gav~Gl~gT~~~p~l~~riGlvr~  325 (432)
T PF06963_consen  298 FRGLGAVFGLLGTWVYPWLMKRIGLVRA  325 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            9999999999999999999999997654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.91  E-value=0.00083  Score=54.81  Aligned_cols=115  Identities=12%  Similarity=0.084  Sum_probs=88.8

Q ss_pred             ccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHH
Q psy3467          33 IWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHA  109 (455)
Q Consensus        33 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~  109 (455)
                      ++++..--.-.++......+..++.+.+.+++|  ..++...+.-.....+.+.++. .++.+-.+.|++.+..++.-..
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            344444444566777778888889999999999  4444444444434434444555 8999999999999999999999


Q ss_pred             HHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh
Q psy3467         110 LLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE  147 (455)
Q Consensus       110 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~  147 (455)
                      ++.+..++++|++-.+++......+.++|.++...+.+
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999888776644

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK11462 putative transporter; Provisional

Probab=97.89  E-value=0.00055  Score=67.50  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=73.7

Q ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHH-HHHHHHh-hhhH-HHHHHHHHHhhcccCchhhHHHH
Q psy3467          37 AEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAF-LVPVAAG-HSIL-ALSIIRFIQGLGEGPIVPCTHAL  110 (455)
Q Consensus        37 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~-~~~~~~~-~~~~-~~~~~r~l~G~~~~~~~~~~~~~  110 (455)
                      ...+.+.+.+.++..++.+++++++||+|   ........... ....... ..+. .+.+.-++.|++.+...+...++
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888899999999999999999   22212221111 1111111 1222 34445566788777777777788


Q ss_pred             HhcccC-------CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         111 LAKWIP-------PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       111 i~e~~~-------~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ++|..+       +++.|...+.......+|..+++.+++.+.+.
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876       33345556777788999999999999888764

>KOG3098|consensus

Probab=97.87  E-value=0.0016  Score=62.74  Aligned_cols=108  Identities=11%  Similarity=0.040  Sum_probs=83.9

Q ss_pred             hhHH-HHHHHHHHHHhhhhhHHHHhHHh--HHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHhhcccCchhhHHHHHhcc
Q psy3467          39 QGYV-LSSFFYGYVLTQIPFGILAKKYG--IGMLINS-VFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKW  114 (455)
Q Consensus        39 ~~~~-~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~-~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~e~  114 (455)
                      .|+. .++-+..+.+..++.+.+.|+.|  ..+...+ .........-+.+.+.+++...+.|+|.+..+..--.++.|.
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSN  130 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhc
Confidence            3443 77888888899999999999999  3333333 333333333344555999999999999999999999999999


Q ss_pred             cCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH
Q psy3467         115 IPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS  146 (455)
Q Consensus       115 ~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~  146 (455)
                      .++|++.+..++.......+.++|..+...+.
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            99999999999999988888888877765543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00029  Score=65.40  Aligned_cols=152  Identities=16%  Similarity=0.185  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHhhhhhcccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHH-HHHHHHHHHHhhhh
Q psy3467          11 IFVSRVINTKLTRRVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINS-VFAFLVPVAAGHSI   86 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~-~~~~~~~~~~~~~~   86 (455)
                      .|+.-.+.......++....| .|.++.+.+...+.+..+..+|.++...+..|+.  ..+...+ +..+.+......++
T Consensus       245 ~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g  324 (422)
T COG0738         245 IFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG  324 (422)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444444444455555555444 7889999999999999999999999999999999  4444444 44555555666666


Q ss_pred             HHHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHH
Q psy3467          87 LALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGA  166 (455)
Q Consensus        87 ~~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~  166 (455)
                      ..-+..-++.|+..+..+|...+...+..+ + .....+..-....+|.++-|.+.|++.++   .|-...+.....++.
T Consensus       325 ~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~---~g~~~~~~~~pllc~  399 (422)
T COG0738         325 VVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADM---FGIQLTFLIVPLLCY  399 (422)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHh---hhhHHHHHHHHHHHH
Confidence            666677788899999999999999999998 3 34444555566778999999999999998   777777664444444


Q ss_pred             H
Q psy3467         167 V  167 (455)
Q Consensus       167 ~  167 (455)
                      +
T Consensus       400 l  400 (422)
T COG0738         400 L  400 (422)
T ss_pred             H
Confidence            4

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.81  E-value=0.00057  Score=66.32  Aligned_cols=129  Identities=11%  Similarity=-0.083  Sum_probs=86.8

Q ss_pred             ccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccCchhhHHH
Q psy3467          33 IWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHA  109 (455)
Q Consensus        33 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  109 (455)
                      +.+....+...+.+..+..+|.++.+++.||++   ..........+........+....+..-.+.|++.+..+|...+
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~s  344 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYG  344 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555667777888999999999999999   32233333334444444444444467777888889999999999


Q ss_pred             HHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhccc--CC-CCchhHHHhhH
Q psy3467         110 LLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF--AG-GWPSIFYVFGL  163 (455)
Q Consensus       110 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~--~~-~wr~~f~~~~~  163 (455)
                      ...+..+++.+. +.+...++ .+|..+.|.+.|.+.+...  .. +-+..|++..+
T Consensus       345 l~~~~~g~~~~~-~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~  399 (410)
T TIGR00885       345 IALKGLGQDTKY-GAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL  399 (410)
T ss_pred             HHHhhhhhhhhh-hHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence            999999755443 33333333 3999999999999988410  01 46777776443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.79  E-value=0.00049  Score=67.28  Aligned_cols=112  Identities=17%  Similarity=0.152  Sum_probs=89.3

Q ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh--hhH-HHHHHHHHHhhcccCchhhHHHH
Q psy3467          37 AEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH--SIL-ALSIIRFIQGLGEGPIVPCTHAL  110 (455)
Q Consensus        37 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~--~~~-~~~~~r~l~G~~~~~~~~~~~~~  110 (455)
                      ...+.+..+..++..++.+++++++||+|   ....+..+..+......+.  ++. .+++.-++.|++.+...+...++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            56788888999999999999999999999   3333333333333333333  355 89999999999999999999999


Q ss_pred             HhcccCC-------CcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         111 LAKWIPP-------TERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       111 i~e~~~~-------~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ++|..+.       ++.|...+..+....+|..+++.+.+.+.+.
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999973       3468889999999999999999999888764

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.78  E-value=0.00011  Score=52.02  Aligned_cols=64  Identities=22%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         223 AILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+-..+++.+.....+..+.|.++++ .|+|+.|.|.+.++..+...++.++.|.++||.++++.
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~   67 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV   67 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence            34456677788888889999999998 79999999999999999999999999999999999854

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.62  E-value=0.0021  Score=62.97  Aligned_cols=141  Identities=14%  Similarity=0.033  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHHHHHhhh----------------------hHHHHHHH
Q psy3467          40 GYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVPVAAGHS----------------------ILALSIIR   93 (455)
Q Consensus        40 ~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~r   93 (455)
                      .+....+.+...+.+++..++.+|+|    ...+...+..++.....+.+                      .+..++.-
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            44555566666677778888899997    21222222222222221111                      13677888


Q ss_pred             HHHhhcccCchhhHHHHHhcccCC--CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHH
Q psy3467          94 FIQGLGEGPIVPCTHALLAKWIPP--TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus        94 ~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      .+.|+..+.....-++++++..++  ++.|..+|+++.+..+.+++..+..+.+.+..+ .+-.+.+.+.++..++..+.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g-~~~~~~~~~~gv~~~~aa~~  466 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-GGNLPAFVVGAVAAFVSGLL  466 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCeeHHHHHHHHHHHHHHH
Confidence            999999999999999999999995  456999999999999999999988888655411 24577888888888888888


Q ss_pred             hhhhcccCCC
Q psy3467         172 FLLYCYEEPE  181 (455)
Q Consensus       172 ~~~~~~e~~~  181 (455)
                      .++.+|+.+.
T Consensus       467 ~~~~~~~~~~  476 (477)
T TIGR01301       467 ALILLPRPRV  476 (477)
T ss_pred             HHHhCCCCCC
Confidence            8888887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.62  E-value=0.0043  Score=58.23  Aligned_cols=143  Identities=17%  Similarity=0.141  Sum_probs=110.3

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh------HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG------IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G------~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~  100 (455)
                      .+-||++..|..-+......|..++-...|.+..| .+      ..+....+.......++...+. .+-..-++.|++.
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~  315 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN  315 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence            35599999999999999999999999999998873 44      3333333333444445555555 8888999999999


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc-------ccCCCCchhHHHhhHHHHHHHHH
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY-------GFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~-------~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      |.......+.+.|..++++.|..+|.+.....+...++..+++.+.+.       .+..++-.+|.+.++..++..++
T Consensus       316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987652       12234566676666655553333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.57  E-value=0.00034  Score=68.68  Aligned_cols=69  Identities=9%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHh-hhccc
Q psy3467         219 LPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSM-ITSEK  287 (455)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~  287 (455)
                      +.++.++.......+.++++..++|.|+++.+|+++.+++.+...+.....++.+++|+++||+ |||+.
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~   78 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA   78 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence            4566667777777888899999999999988999999999999999999999999999999999 98865

>KOG0637|consensus

Probab=97.56  E-value=0.0013  Score=62.17  Aligned_cols=251  Identities=13%  Similarity=0.059  Sum_probs=139.6

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH----Hh----HHHHHHHHHHHHHHHHHhhh------------
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK----YG----IGMLINSVFAFLVPVAAGHS------------   85 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~G----~~l~~~~~~~~~~~~~~~~~------------   85 (455)
                      ++..+++|++....+.+--.-.+...+.+++.|..+||    ||    ..........+...+..++.            
T Consensus        56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~  135 (498)
T KOG0637|consen   56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK  135 (498)
T ss_pred             cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence            44556788899888998889999999999999999996    55    11111111111111111111            


Q ss_pred             -----hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchh-HHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCch--
Q psy3467          86 -----IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSR-LGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPS--  156 (455)
Q Consensus        86 -----~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~--  156 (455)
                           .. .++++--+.=++.-..+..+.+++.|...+++|.+ +++.+.....+|..+|..++++       .+|+-  
T Consensus       136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y-------~~~~~~~  208 (498)
T KOG0637|consen  136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY-------LGLYKIF  208 (498)
T ss_pred             ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc-------cCceEEe
Confidence                 11 34444444455666778889999999998776666 9999999999999999998874       34433  


Q ss_pred             hHHHhhHHHHHHHHHhhhhcccCCCC-----CCCCChhHHHHHhhhcccccCCCCCCCCC-----hhhhh-cChhHHHHH
Q psy3467         157 IFYVFGLVGAVWSVAFLLYCYEEPEA-----HPNIAEDERKYIMSSVWGLAGVASSPPVP-----WKDIV-SSLPFWAIL  225 (455)
Q Consensus       157 ~f~~~~~~~~~~~i~~~~~~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~  225 (455)
                      .|.....+-+.+..+-..+..|-+-.     .......|++...+.   .+.+.+....+     ...+. ..+..+.++
T Consensus       209 ~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~---~~~~~~~~~~~~~~e~fG~~~~mpr~m~~L~  285 (498)
T KOG0637|consen  209 PFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG---TTARSKSSKLPFLLEIFGALKVMPRPMRMLL  285 (498)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc---ccccccccCcchHHHHhchHhhCChhHHHHH
Confidence            23332222222222222222211100     000000000000000   00000000000     01122 235678888


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHH-HHhcCccccc----------------hhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         226 IAHMGQNYGYETLMTELPTFMK-QVLHFNIKEN----------------GTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~----------------g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      +...+.+........+.+.++- +.|+-|+...                .+-+.++.+...+.+....++.||+|.|+
T Consensus       286 i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~  363 (498)
T KOG0637|consen  286 IVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRK  363 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence            8888888888888777777763 3455443321                22333455566677777888899999554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.54  E-value=0.0037  Score=60.25  Aligned_cols=117  Identities=15%  Similarity=0.067  Sum_probs=86.7

Q ss_pred             cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh--hhhH-HHHHHHHHHhhcccCchh
Q psy3467          32 FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG--HSIL-ALSIIRFIQGLGEGPIVP  105 (455)
Q Consensus        32 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~--~~~~-~~~~~r~l~G~~~~~~~~  105 (455)
                      +|-++.+..+.......+...+.+++.++.+|+|   ....+..+..+.....-+  .++. ..++..++.++|.+...+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            4445556667777777788888999999999999   333333333333332222  3345 888888999999999999


Q ss_pred             hHHHHHhcccC-------CCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         106 CTHALLAKWIP-------PTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       106 ~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ...++++|..+       .++-|...+.+....=+|..++..+.++....
T Consensus       347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999885       34457778888888889999999888887664

>KOG4332|consensus

Probab=97.49  E-value=0.0014  Score=57.41  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=70.1

Q ss_pred             hhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhc
Q psy3467          23 RRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLG   99 (455)
Q Consensus        23 ~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~   99 (455)
                      |.+-.+-+.++..+.+++.+.-.-.-..++...+.|-++||-|  ......++.-+.+.+.-.++.+ .++++|.+-|+.
T Consensus        58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGia  137 (454)
T KOG4332|consen   58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIA  137 (454)
T ss_pred             ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHH
Confidence            4444456778888889988877777778888999999999999  4444444445555566777888 999999999999


Q ss_pred             ccCchhhHHHH-Hhccc
Q psy3467         100 EGPIVPCTHAL-LAKWI  115 (455)
Q Consensus       100 ~~~~~~~~~~~-i~e~~  115 (455)
                      .+..+.+.-+. ++|.-
T Consensus       138 TsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  138 TSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88777766654 55654

>PTZ00207 hypothetical protein; Provisional

Probab=97.48  E-value=0.00066  Score=68.00  Aligned_cols=174  Identities=11%  Similarity=0.036  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccCccc-cc-ccchhhH-HHHHHHHHHHHhhhhhHHHH----hH-----Hh--HHHH
Q psy3467           4 VQHTAYSIFVSRVINTKLTRRVHHKDGSF-IW-TTAEQGY-VLSSFFYGYVLTQIPFGILA----KK-----YG--IGML   69 (455)
Q Consensus         4 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-s~~~~~~-~~s~~~l~~~~~~~~~g~l~----dr-----~G--~~l~   69 (455)
                      .++.++..++.......+...+.++.+.+ |. ++++.+. ..+++.++..+|.+..|.+.    .|     +.  ..+.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            45566666666555555555556666666 55 2232222 77888888888888888876    22     33  3333


Q ss_pred             HHHHHHHHHHHHHhhhh-HHHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHH-HHHHHHhHh
Q psy3467          70 INSVFAFLVPVAAGHSI-LALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFS-LPLSGLLSE  147 (455)
Q Consensus        70 ~~~~~~~~~~~~~~~~~-~~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g-~~i~~~l~~  147 (455)
                      ...+..+...+....-. -.+.+.-++.|++.|..+++....++|+|. |+-|+-.........+|..+- -.+.|.+.+
T Consensus       435 ~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd  513 (591)
T PTZ00207        435 IPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT  513 (591)
T ss_pred             HHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333 289999999999999999999999999999 999999999999999998776 556666654


Q ss_pred             cccC--C--------CCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         148 YGFA--G--------GWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       148 ~~~~--~--------~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      ....  .        =.|..|++.+.+++...+......-+
T Consensus       514 ~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R  554 (591)
T PTZ00207        514 QQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ  554 (591)
T ss_pred             HHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence            3110  1        15778888888887766665544333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.47  E-value=0.002  Score=63.87  Aligned_cols=138  Identities=13%  Similarity=0.023  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhHHh-H---------HHHHHHHHHHHHH--------HHHh--hhhH-HHHHHHHHHh
Q psy3467          39 QGYVLSSFFYGYVLTQIPFGILAKKYG-I---------GMLINSVFAFLVP--------VAAG--HSIL-ALSIIRFIQG   97 (455)
Q Consensus        39 ~~~~~s~~~l~~~~~~~~~g~l~dr~G-~---------~l~~~~~~~~~~~--------~~~~--~~~~-~~~~~r~l~G   97 (455)
                      .+++.+++.+...+.+++.+++.||+| .         ...+..+..++..        ....  ..+. .++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            466777788888899999999999997 1         2222222111111        1101  1234 6778899999


Q ss_pred             hcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhccc-------CCCCchhHHHhhHHHHHHHH
Q psy3467          98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF-------AGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus        98 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~-------~~~wr~~f~~~~~~~~~~~i  170 (455)
                      +|.+...+...+++.+..|+|.++.+++++.....+|..++..++........       .....+.|...++..++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888876532100       01245677777766666555


Q ss_pred             Hhhhhc
Q psy3467         171 AFLLYC  176 (455)
Q Consensus       171 ~~~~~~  176 (455)
                      +.+...
T Consensus       471 ~~~~~~  476 (489)
T PRK10207        471 VMALMV  476 (489)
T ss_pred             HHHHHH
Confidence            554443

>KOG0253|consensus

Probab=97.44  E-value=0.00037  Score=63.79  Aligned_cols=125  Identities=14%  Similarity=0.195  Sum_probs=85.4

Q ss_pred             HHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHhhcccCchhhHHHHHhcccCC
Q psy3467          46 FFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL--ALSIIRFIQGLGEGPIVPCTHALLAKWIPP  117 (455)
Q Consensus        46 ~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~~~~~~--~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~  117 (455)
                      ..+.-.-|.++.+.+.||+|      ..++..+++......|...+.+  .+..+|++..    +.+.+.+.|..|.+|.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAFQVAYVYTPEVYPT  465 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chheEEEEecCcccch
Confidence            34455678899999999999      4444444554444444433333  5666676543    3455667889999999


Q ss_pred             CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         118 TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       118 ~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      +-|+...|.-+....+|.++.|+++ ...+    .+-..+..+.+...++..+...++--|+
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA-~~~e----~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIA-MRAE----LSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHH-HHhc----cceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999999999 3333    3444455566666666555555444443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.36  E-value=0.00069  Score=48.48  Aligned_cols=47  Identities=13%  Similarity=0.163  Sum_probs=42.7

Q ss_pred             HHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh
Q psy3467          19 TKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG   65 (455)
Q Consensus        19 ~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G   65 (455)
                      -.+.|.+|.+++|.++|.++.|++.+.+++|+.+|++....+.++..
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~   55 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR   55 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34567888999999999999999999999999999999999998765

Note that many members are hypothetical proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.27  E-value=0.002  Score=45.68  Aligned_cols=55  Identities=16%  Similarity=0.045  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG   65 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G   65 (455)
                      .+........+.|.++...++.|+|..++|.+.++..+...++++++|.++||++
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~   63 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG   63 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4445555666778888888899999999999999999999999999999999999

>KOG3342|consensus

Probab=97.22  E-value=0.0014  Score=50.96  Aligned_cols=88  Identities=76%  Similarity=1.316  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCCCceEEEEEe------------------------------------------------
Q psy3467         306 SFGMIVSSALMIWKGLMVLTGSESPIVVVLRE------------------------------------------------  337 (455)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------  337 (455)
                      -.+.++.+..+.|.+..++++..+|+++++.+                                                
T Consensus        25 n~~mivssA~MiwK~l~vvt~seSPiVVVLSgSMePaF~RGDlLfL~N~~~~p~~vGdivVf~vegR~IPiVHRviK~he  104 (180)
T KOG3342|consen   25 NFAMIVSSAYMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNRNEDPIRVGDIVVFKVEGREIPIVHRVIKQHE  104 (180)
T ss_pred             HHHHHHHHHHHHHhhheeeeCCCCCEEEEEcCCcCcccccccEEEEecCCCCcceeccEEEEEECCccCchhHHHHHHhc
Confidence            34556667789999999999999999887742                                                


Q ss_pred             --cCcccccccCCCCCccccccccCCCcccccccccccccccccceeeEEEEeccCCC
Q psy3467         338 --DGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNEYPK  393 (455)
Q Consensus       338 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  393 (455)
                        .+.....++++++..|+...|+.+..|+.+....|.+-|++|..|+++.++++.|+
T Consensus       105 ~~~~~~~~LTKGDNN~~dD~~Ly~~gq~~L~r~~Ivg~~~G~~Py~G~itI~mnd~p~  162 (180)
T KOG3342|consen  105 KSNGHIKFLTKGDNNAVDDRGLYAQGQNWLERKDIVGRVRGYLPYVGMITIWMNDYPK  162 (180)
T ss_pred             ccCCcEEEEecCCCCcccchhcccccccceeccceeeEEeeccccceEEEEEecCCcc
Confidence              24456778888899999999999999999999999999999999999999999776

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.22  E-value=0.13  Score=50.55  Aligned_cols=174  Identities=15%  Similarity=0.145  Sum_probs=98.8

Q ss_pred             hHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh-c-----ccCCCCchhHHH-hhHHHH--HHHHHhhhhc
Q psy3467         106 CTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE-Y-----GFAGGWPSIFYV-FGLVGA--VWSVAFLLYC  176 (455)
Q Consensus       106 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~-~-----~~~~~wr~~f~~-~~~~~~--~~~i~~~~~~  176 (455)
                      .-..+..|.++.+|-.+..+++..+.++|.+++..+...+.+ .     .....|...... .+++.+  +..+.....+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~  243 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYM  243 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456888999999999999999999999999999988888877 1     011345433321 111111  1122222333


Q ss_pred             ccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccc
Q psy3467         177 YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKE  256 (455)
Q Consensus       177 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  256 (455)
                      .+...+++...+++++      ++.++.+..-.++++.++|+|.+..+++...+.....+.+....-...++.+. |+.+
T Consensus       244 ~~~vl~~~~~~~~~~~------~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~  316 (491)
T PF03219_consen  244 NKNVLTDPRFYPSAKK------KKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPND  316 (491)
T ss_pred             HHHccCccccchhhhc------ccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchH
Confidence            3221111111000000      00001112223556677888888888887777777766666555555555443 3332


Q ss_pred             ----chhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         257 ----NGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       257 ----~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                          .|...+..++...+..++++.+.+|+|-+.
T Consensus       317 ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~  350 (491)
T PF03219_consen  317 YSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRT  350 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                234445556666666677888888887653

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.20  E-value=0.014  Score=58.52  Aligned_cols=107  Identities=14%  Similarity=0.155  Sum_probs=81.3

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHHHHHHH--hhhhH-HHHHHHHHHhhcccCchhhHHHH
Q psy3467          38 EQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFLVPVAA--GHSIL-ALSIIRFIQGLGEGPIVPCTHAL  110 (455)
Q Consensus        38 ~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~~~~~~--~~~~~-~~~~~r~l~G~~~~~~~~~~~~~  110 (455)
                      +.++....+.++..+++.+.|.+..+.+    ..++.....+++....+  ..++. ..++.-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            5788888999999999999999998888    33333333333322222  22344 77788999999999988888888


Q ss_pred             HhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHH
Q psy3467         111 LAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL  144 (455)
Q Consensus       111 i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~  144 (455)
                      ..-..|+++-+.+.++..+.-.+|..+|..+-..
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            8888899999999999999888888888766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.18  E-value=0.11  Score=49.52  Aligned_cols=132  Identities=10%  Similarity=-0.006  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCC
Q psy3467          42 VLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPP  117 (455)
Q Consensus        42 ~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~  117 (455)
                      +.-+-.+-..+..+.+.+..+|..   +..........+....+++++. .=+++-.+.+++.|........+.+ .+++
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~  142 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK  142 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc
Confidence            444455556666777778888887   4555555555666666766777 7788889999999988887777654 5543


Q ss_pred             CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCC
Q psy3467         118 TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEP  180 (455)
Q Consensus       118 ~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~  180 (455)
                          ...+-++.+.+.+.++|+..-..+.+.+  .+-|..+.+...+.++..+..++.+|+++
T Consensus       143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~~g--~s~~~tll~~~~lp~~~~~~~f~~L~~~~  199 (402)
T PF02487_consen  143 ----SSLSAWSSGTGGAGLVGALYYLGLTTLG--LSPRTTLLIMLVLPAIFLLSYFFLLPSPP  199 (402)
T ss_pred             ----cccccccCCcChhhHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence                3467778888888888877665554421  34477777777766664555555666443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.17  E-value=0.0033  Score=60.59  Aligned_cols=51  Identities=8%  Similarity=0.074  Sum_probs=43.5

Q ss_pred             HHhhhhHHHHHHhcCcccc-chhhchhHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3467         238 LMTELPTFMKQVLHFNIKE-NGTLSALPYLAMWIFSMFASFIADSMITSEKF  288 (455)
Q Consensus       238 ~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~  288 (455)
                      ...+...++.+++|+|+.| .|.+.+.+..++.+.++++|+++||+|.|+.+
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL   95 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL   95 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            3444444566679999999 99999999999999999999999999999763

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2615|consensus

Probab=96.90  E-value=0.0088  Score=55.35  Aligned_cols=119  Identities=16%  Similarity=0.239  Sum_probs=94.7

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-----HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccC
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-----IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGP  102 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~  102 (455)
                      .+.+|.++.|.|-+.+...+...+.+....+..||..     ..........-...+...+... .+..+-.+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            3679999999999999999999999999999999987     2222222222222233334444 777788888888888


Q ss_pred             chhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh
Q psy3467         103 IVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE  147 (455)
Q Consensus       103 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~  147 (455)
                      ..+....++....|.++||..+|+......++-++||+++|.+..
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            889999999999999999999999999999999999999987743

>KOG0252|consensus

Probab=96.70  E-value=0.0012  Score=62.44  Aligned_cols=128  Identities=17%  Similarity=0.121  Sum_probs=89.9

Q ss_pred             HHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhh--------H-HHHHHHHHHhhcccCchhhHHHHHhcccCCC
Q psy3467          51 VLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSI--------L-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPT  118 (455)
Q Consensus        51 ~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~--------~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~  118 (455)
                      ..|-.+...++|+.|   +-+.+..+.++.....+...+        . ...+..++.-+|-.   .....+-+|.+|.+
T Consensus       362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FPar  438 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPAR  438 (538)
T ss_pred             CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHH
Confidence            346677788899999   455555555555544444333        1 34444555555544   33455678999999


Q ss_pred             cchhHHHHHHhhHHHHHHHHHHHHHHhHhcc--cCCCCchhHHHhhHHHHHHHHHhhhhcccCCCC
Q psy3467         119 ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG--FAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEA  182 (455)
Q Consensus       119 ~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~--~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~  182 (455)
                      -|+...|+.....-+|.+++...-..+.+++  ...+-|+++++.+.+.++ .++.-+++||+.++
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-gi~~T~l~pEtk~~  503 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-GILFTLLIPETKGK  503 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-hHheeEEeeccccc
Confidence            9999999999999999999999888887711  116889999999988888 55555667787543

>KOG2563|consensus

Probab=96.67  E-value=0.012  Score=55.73  Aligned_cols=162  Identities=14%  Similarity=0.054  Sum_probs=94.9

Q ss_pred             HHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHH---HHHHHHHHHHHHHhhhhH--
Q psy3467          17 INTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGML---INSVFAFLVPVAAGHSIL--   87 (455)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~---~~~~~~~~~~~~~~~~~~--   87 (455)
                      +...++..+......-|.+....|++.....++.++++...|.+.||..    ..+.   ...+.......+..-...  
T Consensus       281 ~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~v  360 (480)
T KOG2563|consen  281 LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSV  360 (480)
T ss_pred             HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceE
Confidence            3334444454444555667788999999999999999999999999999    2221   222221222222222222  


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAV  167 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~  167 (455)
                      .+...-.+.|.+.....|...-+-.|..-|..-+.-.|+......+=..+-..+-+...+.....+|....-+...+.++
T Consensus       361 iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  440 (480)
T KOG2563|consen  361 IVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSAL  440 (480)
T ss_pred             ehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHH
Confidence            55666677788888889999999888886665566666666554444444444445554432112455544333333333


Q ss_pred             HHHHhhhhccc
Q psy3467         168 WSVAFLLYCYE  178 (455)
Q Consensus       168 ~~i~~~~~~~e  178 (455)
                      .......+.+|
T Consensus       441 l~~~lva~~r~  451 (480)
T KOG2563|consen  441 LGAILVAFFRP  451 (480)
T ss_pred             HHHHHHhhhhh
Confidence            33333334343

>PRK03612 spermidine synthase; Provisional

Probab=96.64  E-value=0.086  Score=52.60  Aligned_cols=135  Identities=13%  Similarity=0.086  Sum_probs=80.4

Q ss_pred             cccccchhhHHHHHHHHHHHHhhhhhHHHHhH----Hh-HHHHHHHHH--H--HHHHHHHhhhhH--HHHHHHHHHhhcc
Q psy3467          32 FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK----YG-IGMLINSVF--A--FLVPVAAGHSIL--ALSIIRFIQGLGE  100 (455)
Q Consensus        32 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~G-~~l~~~~~~--~--~~~~~~~~~~~~--~~~~~r~l~G~~~  100 (455)
                      +|-+....+.+.+++.+|.++|+.+.+++.++    +. +-+....+.  .  +...........  .+...-++.++..
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55577788999999999999999999988643    22 111111111  0  010111111111  2334455667777


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh-cccCCCCchhHHHhhHHHHHHHH
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE-YGFAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~-~~~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      |...|....+..+... ++-+...|-......+|.++|.++.+++.- .   .|-....++.+.+.++..+
T Consensus       125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~---lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPR---LGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHH
Confidence            7778887777665432 345667788888899999999988887654 3   4544444444444444333

>KOG3574|consensus

Probab=96.53  E-value=0.19  Score=46.79  Aligned_cols=243  Identities=9%  Similarity=0.068  Sum_probs=132.4

Q ss_pred             hhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHh-----HHh-------HHHHHHHHHHHHHHHH-------
Q psy3467          21 LTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAK-----KYG-------IGMLINSVFAFLVPVA-------   81 (455)
Q Consensus        21 l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-----r~G-------~~l~~~~~~~~~~~~~-------   81 (455)
                      +...+|-+-+.-|.|.++.+...-++. - -...+.|.++.|     |+|       ......+..+......       
T Consensus        49 L~~~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~  126 (510)
T KOG3574|consen   49 LIGAIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGG  126 (510)
T ss_pred             HhhhhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCccccc
Confidence            333667666666777776654433221 1 234678899999     999       2222222222222111       


Q ss_pred             -HhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc----ccCCCCc
Q psy3467          82 -AGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY----GFAGGWP  155 (455)
Q Consensus        82 -~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~----~~~~~wr  155 (455)
                       +..++. .+....++.-+..+.--.+.-...-.+.++++-|.+......+.+.|..++..+--.+...    ....+|.
T Consensus       127 ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P  206 (510)
T KOG3574|consen  127 NGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIP  206 (510)
T ss_pred             CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCc
Confidence             111222 3333345555555555566666666777889988888777777777777775543222210    0002332


Q ss_pred             ---------hhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHH
Q psy3467         156 ---------SIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILI  226 (455)
Q Consensus       156 ---------~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (455)
                               ...++.+.+.++...+..++-+|.++.   .++++...+           .+.-.-.+++++-|.+..++.
T Consensus       207 ~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~---~~~e~~~~i-----------~~~yk~l~~vLklk~v~~la~  272 (510)
T KOG3574|consen  207 LDQGFITLAGYLWFWGALFIVATTLVALLKKENDES---VDEELELGI-----------HESYKLLRDVLKLKSVRWLAG  272 (510)
T ss_pred             CccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh---hhhhhhcCH-----------HHHHHHHHHHHcCccHHHHHH
Confidence                     223444555555444444443333222   111110000           011112356677788888888


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy3467         227 AHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMIT  284 (455)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  284 (455)
                      .....-.++.+.....+.-+.| .|.+.++-+++.    +.....++..+...-|+..
T Consensus       273 i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~----v~~~plqI~l~~~~gk~ta  325 (510)
T KOG3574|consen  273 ILLTGKLGFQAADALTSLKLLE-HGVPKEELALIA----VPLVPLQIALPLYIGKWTA  325 (510)
T ss_pred             HHHHHHHHhhhhhhccchHHHH-cCCChhHheeee----eehhhHHHhhhhhheeecC
Confidence            8788888888878888888887 799998877765    4455556666666655544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.48  E-value=0.012  Score=56.32  Aligned_cols=82  Identities=21%  Similarity=0.251  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCC---cchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPT---ERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLV  164 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~  164 (455)
                      .+.++-.+.++|.|..-|...++.+|-++++   +|.....++..+.++|..+++.+.+++.++   .+|.+.|.+.++.
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~  111 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN---YGWFLGFGIPAIG  111 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC---S-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc---cchhhhhhHHHHH
Confidence            6888888999999999999999999999865   477788899999999999999999999988   9999999998877


Q ss_pred             HHHHHHHh
Q psy3467         165 GAVWSVAF  172 (455)
Q Consensus       165 ~~~~~i~~  172 (455)
                      .++..+..
T Consensus       112 ~~~~~~~f  119 (372)
T PF00854_consen  112 MLLALIVF  119 (372)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77644443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.43  E-value=0.018  Score=41.28  Aligned_cols=53  Identities=17%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             HHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         232 NYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      ..++......+|...++ .++|..+.+++.+.+.++|.+|.+...++.++..++
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~   57 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR   57 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            34555666778877777 799999999999999999999999999988875544

Note that many members are hypothetical proteins.

>KOG0254|consensus

Probab=96.19  E-value=0.12  Score=51.92  Aligned_cols=147  Identities=13%  Similarity=0.049  Sum_probs=83.1

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh-------------hhH-H-HHH
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH-------------SIL-A-LSI   91 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~-------------~~~-~-~~~   91 (455)
                      +..+.+... .+...+......++..+...+.||+|   ..+.+.....++....+..             ..+ . ...
T Consensus       323 ~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (513)
T KOG0254|consen  323 KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL  401 (513)
T ss_pred             HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence            334444332 44555566666677777799999999   3333333333222222110             011 1 222


Q ss_pred             HHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHH-
Q psy3467          92 IRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSV-  170 (455)
Q Consensus        92 ~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i-  170 (455)
                      .-++..+. ....+....+.+|.+|.+-|+++.++......+...+-...-....+.   .++...|...+..+.+..+ 
T Consensus       402 ~~~v~~f~-~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~---~~~~~~f~~f~~~~~~~~~~  477 (513)
T KOG0254|consen  402 CLFIFSFA-IGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA---LGIGGTFGYFGGICLLSLII  477 (513)
T ss_pred             HHHHHHHh-cccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHH
Confidence            22233332 234466668899999999999999888776555554443333333333   3356677777777766566 


Q ss_pred             HhhhhcccCCC
Q psy3467         171 AFLLYCYEEPE  181 (455)
Q Consensus       171 ~~~~~~~e~~~  181 (455)
                      ..++++||+..
T Consensus       478 fv~~~~pETkg  488 (513)
T KOG0254|consen  478 FVFFFVPETKG  488 (513)
T ss_pred             HheEEcccCCC
Confidence            67788888743

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.16  E-value=0.0001  Score=72.53  Aligned_cols=151  Identities=14%  Similarity=0.002  Sum_probs=90.8

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHH-----h-hh----hHHHHHH
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAA-----G-HS----ILALSII   92 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~-----~-~~----~~~~~~~   92 (455)
                      +.+.++.+.++.  -+......+...++.+....+.||+|   ..+.......+......     . .+    +...++.
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            445555666555  22222333445566677779999999   22222222222211111     1 11    1222222


Q ss_pred             HHHHhhccc-CchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHH
Q psy3467          93 RFIQGLGEG-PIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus        93 r~l~G~~~~-~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      -.+...+.+ ...+....+..|.+|.+.|++..++......++..+++.+...+.+.   .+-...+.+.+.++++..+.
T Consensus       355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~i~~~~~~i~~i~  431 (451)
T PF00083_consen  355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN---LGGWGVFLIFAGVCLIAIIF  431 (451)
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccchhhHHHHHHHHhh
Confidence            222211212 34466678889999999999999999999999999888887777665   44245566666777777788


Q ss_pred             hhhhcccCCC
Q psy3467         172 FLLYCYEEPE  181 (455)
Q Consensus       172 ~~~~~~e~~~  181 (455)
                      .++++||+..
T Consensus       432 ~~~~lpET~g  441 (451)
T PF00083_consen  432 VYFFLPETKG  441 (451)
T ss_pred             eeEEEeeCCC
Confidence            8899999854

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255|consensus

Probab=96.06  E-value=0.22  Score=50.14  Aligned_cols=132  Identities=15%  Similarity=0.061  Sum_probs=82.7

Q ss_pred             HHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-H---HHHHHHHHhhcccCchhhHHHHHhcccCCCcch
Q psy3467          49 GYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-A---LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERS  121 (455)
Q Consensus        49 ~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~---~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~  121 (455)
                      .........+...||+|   .......+..++.......... .   ..+...+...+.+..+.....+.+|.+|...|.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            44455555578899998   2222222222333322222221 2   344444444555556666799999999999999


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCC
Q psy3467         122 RLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHP  184 (455)
Q Consensus       122 ~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~  184 (455)
                      .+.+..+....+|.+++|.+.......    .....+...+..+.+...+...++||+...+-
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQM----FPLLGLILFGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh----cccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence            999999999999999999998665442    11222222355666656677788999865543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.03  E-value=1.6  Score=42.35  Aligned_cols=173  Identities=12%  Similarity=0.002  Sum_probs=89.6

Q ss_pred             hHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccC-------CCCchhHHHhhHHHHHHHHHhhhhccc
Q psy3467         106 CTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFA-------GGWPSIFYVFGLVGAVWSVAFLLYCYE  178 (455)
Q Consensus       106 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~-------~~wr~~f~~~~~~~~~~~i~~~~~~~e  178 (455)
                      .-.....|.+..+|-.|.+++++.+.+++..++..+..++.++.+.       ..-+..+.+.+..++++..+..+.-+.
T Consensus       168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~  247 (509)
T COG3202         168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRN  247 (509)
T ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3446678888889999999999999999999999998888764100       002334444444444433333332222


Q ss_pred             CCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccch
Q psy3467         179 EPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENG  258 (455)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g  258 (455)
                      ..+++....+..++      ++.++.+-.-.++.+.+.|+|-++.+.+...+.+...+.+-..--.-.++.+..+.+...
T Consensus       248 il~~~~f~~~~~~k------k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~  321 (509)
T COG3202         248 VLTDPLFYLRAKKK------KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTA  321 (509)
T ss_pred             cccCcchhHHHhcc------cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHH
Confidence            22222111011100      000000112234456677888888877777776666655543333333332333333333


Q ss_pred             hhc---hhHHHH-HHHHHHHHHHHHHHhhh
Q psy3467         259 TLS---ALPYLA-MWIFSMFASFIADSMIT  284 (455)
Q Consensus       259 ~~~---~~~~~~-~~~~~~~~g~l~dr~g~  284 (455)
                      +..   ...++. .++...+++.+.+|.|-
T Consensus       322 f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW  351 (509)
T COG3202         322 FMGRFQIWTGVVSLVVFLFPGSNLIRRVGW  351 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence            322   223333 33344566777777664

>KOG3810|consensus

Probab=95.96  E-value=0.081  Score=48.51  Aligned_cols=195  Identities=14%  Similarity=0.088  Sum_probs=108.8

Q ss_pred             hhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhH
Q psy3467          85 SIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL  163 (455)
Q Consensus        85 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~  163 (455)
                      ++. .+=+..+.-|...+ ...+-++++-+..+|+++.++.+..-.+.-.|..+|..++..+...+. .+.+..=.+...
T Consensus        93 ~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~  170 (433)
T KOG3810|consen   93 PSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLA  170 (433)
T ss_pred             CCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHH
Confidence            444 66777788887765 567788999999999999999999999999999999999988876410 222332223222


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCC----------CCCChhhhhcChhHHHHHHHHHHHHH
Q psy3467         164 VGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASS----------PPVPWKDIVSSLPFWAILIAHMGQNY  233 (455)
Q Consensus       164 ~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (455)
                       +.........++|..++..-...++++.. ..+.++...+.+.          -..+..+..+||++..-.+-..+..+
T Consensus       171 -~~~ia~~~A~fLP~v~rSl~f~~~~~~~~-v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~sc  248 (433)
T KOG3810|consen  171 -EVTIAVLLALFLPRVKRSLYFHRLEDKIS-VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASC  248 (433)
T ss_pred             -HHHHHHHHHhhCCCCchhhhhhcccccce-eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhc
Confidence             22223444456665542211111111100 0000000000000          01233455678887777777777777


Q ss_pred             HHHHHHhhhhHHHHHHhcCc--cccchhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy3467         234 GYETLMTELPTFMKQVLHFN--IKENGTLSALPYLAMWIFSMFASFIADSMIT  284 (455)
Q Consensus       234 ~~~~~~~~~~~~~~~~~g~s--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  284 (455)
                      +++.+..+....-++. .-+  ..-+|..=....+.++++.+..|.+--++.|
T Consensus       249 g~~QV~nY~Q~LW~~~-~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r  300 (433)
T KOG3810|consen  249 GYYQVTNYTQILWKEV-APNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR  300 (433)
T ss_pred             hhHHHHHHHHHHHHhh-CCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch
Confidence            8887777776666553 211  1122333334445556666666666544443

>KOG1330|consensus

Probab=95.89  E-value=0.017  Score=54.92  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3467         219 LPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSH  290 (455)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  290 (455)
                      ..+..+++...+++...+.+....+..-+. +|.++...|++...+.+...++++++|++.||+.|++++..
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~-fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVLKEVQTY-FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            345667777788888888877766665544 89999999999999999999999999999999999988433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.72  E-value=0.043  Score=48.25  Aligned_cols=102  Identities=16%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             CcchhHHHHHHhhHHHHHHHHHHHHHHh---HhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHH
Q psy3467         118 TERSRLGAFVYAGAQFGTVFSLPLSGLL---SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYI  194 (455)
Q Consensus       118 ~~r~~~~~~~~~~~~~G~~~g~~i~~~l---~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~  194 (455)
                      |+|+........+.++|.++....--.-   .+. ....|++++.+.+++.++.+++..++=.|-....+. +++++.  
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~-~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k~--   77 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIA-LTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEKE--   77 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccccc--
Confidence            5677777777888888887764432111   111 114799999998888877666666653332111111 011110  


Q ss_pred             hhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHH
Q psy3467         195 MSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQ  231 (455)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
                              +.+.+++.+.++.+|++..|...+.+...
T Consensus        78 --------~~~~~~~~s~~~~LK~K~tw~w~~~Yg~w  106 (267)
T PF07672_consen   78 --------NSTLSKKPSYKSILKEKETWKWILIYGIW  106 (267)
T ss_pred             --------cccccccchHHHHHccchHHHHHHHHHHH
Confidence                    00133457789999999988877765543

>KOG2816|consensus

Probab=95.64  E-value=0.4  Score=47.01  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=90.6

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhH-HHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccC
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFG-ILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGP  102 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g-~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~  102 (455)
                      ....+++++.+.+...+.......+++.+.. .+...+|   ...++...-.+.....++++.. ++.....+.++. ..
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~  346 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GI  346 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cc
Confidence            4567899999999988888888888888888 5666677   3333333333444445555555 667777776664 56


Q ss_pred             chhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHh
Q psy3467         103 IVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE  147 (455)
Q Consensus       103 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~  147 (455)
                      ..|...+.+..+.++|++|+..++.+....+...++|.+-+.+..
T Consensus       347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            889999999999999999999999999999999999888776643

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.95  E-value=0.33  Score=47.03  Aligned_cols=137  Identities=20%  Similarity=0.202  Sum_probs=95.7

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHhHHh-------------HHHHHHHHHHHHHHHH--Hhh-----hhH-HHHHHHHHH
Q psy3467          38 EQGYVLSSFFYGYVLTQIPFGILAKKYG-------------IGMLINSVFAFLVPVA--AGH-----SIL-ALSIIRFIQ   96 (455)
Q Consensus        38 ~~~~~~s~~~l~~~~~~~~~g~l~dr~G-------------~~l~~~~~~~~~~~~~--~~~-----~~~-~~~~~r~l~   96 (455)
                      ..++.++.+.+...+.+++...+--|.+             ..+..++...+.....  ...     .+. +++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            4578889999999888888888777644             3333333222222222  111     233 888899999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHH------hHhcccCCCCchhHHHhhHHHHHHHH
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL------LSEYGFAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~------l~~~~~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      ++|+=...|.+.+++....|++-.+.+++.+-.....|..++..+++.      ..+.   ..-...|+..+...++..+
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~---~~~~~~F~~~g~v~i~~~~  481 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTA---FIEGRVFGTIGVVAIVIGI  481 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhh---hhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999888999988888888888887777763      1122   3456677777777776666


Q ss_pred             Hhhhhcc
Q psy3467         171 AFLLYCY  177 (455)
Q Consensus       171 ~~~~~~~  177 (455)
                      ......|
T Consensus       482 ~~~~~~~  488 (498)
T COG3104         482 LLLLLSP  488 (498)
T ss_pred             HHHHhhH
Confidence            5554443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.45  E-value=0.67  Score=44.20  Aligned_cols=135  Identities=17%  Similarity=0.194  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHH-HhHHh---HHHHHHHHHHHHHHHHHhhhh
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGIL-AKKYG---IGMLINSVFAFLVPVAAGHSI   86 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l-~dr~G---~~l~~~~~~~~~~~~~~~~~~   86 (455)
                      .+....++..+.+.+..- .++.-...+..+...+|.+|..++.--...+ ..|.-   +......+..+......+.++
T Consensus       256 Y~aEY~InqGv~~tl~fp-~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~rir~lwils~LQ~~nl~~~~l~s~~~fips  334 (402)
T PF02487_consen  256 YFAEYFINQGVAPTLLFP-NSFFSPRDQYRWYQLLYQLGVFISRSSLPFFRIRRLWILSLLQVINLVFLLLQSWYRFIPS  334 (402)
T ss_pred             HHHHHHHHhchHHHhcCC-ccCCCHHHHHHHHHHHHHHHHhhhhcceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            344444555555544221 2233345577777777777765553322211 01111   222233333333334444455


Q ss_pred             H-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH
Q psy3467          87 L-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS  146 (455)
Q Consensus        87 ~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~  146 (455)
                      . ..++.-+..|+..|..+......+.|-.++++|-.+++..+.+-++|..++.+++-.+.
T Consensus       335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5 67778899999999999999999999999999999999999999999999998887653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.33  E-value=0.19  Score=49.05  Aligned_cols=115  Identities=10%  Similarity=0.010  Sum_probs=78.2

Q ss_pred             cccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-HHHHHHH--HHHHHHHHHH-----------hhhhHHHHHHHHHHhhc
Q psy3467          34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-IGMLINS--VFAFLVPVAA-----------GHSILALSIIRFIQGLG   99 (455)
Q Consensus        34 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~~l~~~~--~~~~~~~~~~-----------~~~~~~~~~~r~l~G~~   99 (455)
                      .|+...+.+..+..++..++..+....--+.. ..++...  +..+......           ..+.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888888888888888888888777666666 2222222  2221111100           01111222333555555


Q ss_pred             ccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467         100 EGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus       100 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                      ....+.....+++|..|+..-|..++++....++|..++..++..+.+.
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~  380 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL  380 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777788999999999999999999999999999999999988775

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=94.09  E-value=0.24  Score=45.97  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             HhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         249 VLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       249 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .+|++..|.+.++........+...+.|.++||+|||+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~  101 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA  101 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence            489999999999999888899999999999999999965

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=92.96  E-value=0.021  Score=57.15  Aligned_cols=51  Identities=12%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             cHHHHHhhHHHHHHHHHHhcchhhHHHHHhhhhHHHHHhhccccccceeee
Q psy3467         400 PWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSVR  450 (455)
Q Consensus       400 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~~  450 (455)
                      ..+.+++++.+....++..+.....-++.|.+|+|++++++++-.+..++.
T Consensus       297 ~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~  347 (539)
T PF03137_consen  297 ALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLT  347 (539)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            345689999999999999999999999999999999999999987766654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1237|consensus

Probab=92.56  E-value=3  Score=42.14  Aligned_cols=144  Identities=17%  Similarity=0.128  Sum_probs=99.5

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh----HHHHHHHHHHHH---HHHHHh--------------
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----IGMLINSVFAFL---VPVAAG--------------   83 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G----~~l~~~~~~~~~---~~~~~~--------------   83 (455)
                      +.-+.+++|.+...+.-..+.+.-..-...+..+.++|-|-    ...+...+..++   ....+.              
T Consensus        61 v~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~  140 (571)
T KOG1237|consen   61 VTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPG  140 (571)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Confidence            34445667777777888888888888888899999999755    111111111111   111100              


Q ss_pred             ------hhh--H-HHHHHHHHHhhcccCchhhHHHHHhcccC---CC---cchhHHHHHHhhHHHHHHHHHHHHHHhHhc
Q psy3467          84 ------HSI--L-ALSIIRFIQGLGEGPIVPCTHALLAKWIP---PT---ERSRLGAFVYAGAQFGTVFSLPLSGLLSEY  148 (455)
Q Consensus        84 ------~~~--~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~---~~---~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  148 (455)
                            .+.  . .+....-+..+|.|+.-+...+.-+|-++   ++   ++...+.++....++|..++..+-.++-+.
T Consensus       141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~  220 (571)
T KOG1237|consen  141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN  220 (571)
T ss_pred             CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence                  011  1 56666777788999999999999999998   32   233677888899999999999888888777


Q ss_pred             ccCCCCchhHHHhhHHHHHHHHH
Q psy3467         149 GFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus       149 ~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                         .+|.+.|.+......+..++
T Consensus       221 ---~~w~lgf~i~~~~~~lai~i  240 (571)
T KOG1237|consen  221 ---VGWKLGFGIPTVLNALAILI  240 (571)
T ss_pred             ---ccceeeccHHHHHHHHHHHH
Confidence               89999998877766653433

>KOG3626|consensus

Probab=92.21  E-value=3.9  Score=42.12  Aligned_cols=49  Identities=14%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             HHHHHhhHHHHHHHHHHhcchhhHHHHHhhhhHHHHHhhccccccceee
Q psy3467         401 WKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSV  449 (455)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~y~~~~~~~~~~~~g~~  449 (455)
                      .+.+++++-....+++..+....+.++.|.+|+|+++++|.+-.+.-++
T Consensus       385 ~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l  433 (735)
T KOG3626|consen  385 IKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANIL  433 (735)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHH
Confidence            3468899999999999999999999999999999999999987665444

>KOG3097|consensus

Probab=91.88  E-value=10  Score=34.98  Aligned_cols=70  Identities=16%  Similarity=0.185  Sum_probs=45.3

Q ss_pred             HHHHHHHhhhhhHHHHhHHh--HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHHHHhccc
Q psy3467          46 FFYGYVLTQIPFGILAKKYG--IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWI  115 (455)
Q Consensus        46 ~~l~~~~~~~~~g~l~dr~G--~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~  115 (455)
                      ..+..+..+++.+.+..++|  ..+......-........-+.+ .++-.-...|++.+..+..--+++++.-
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            34455566666668999999  3333333333333444455566 8999999999999988766655555544

>KOG3762|consensus

Probab=91.71  E-value=0.15  Score=49.63  Aligned_cols=57  Identities=23%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         230 GQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +.......+...++.|.++ +|+++.+.|.+...--+.++++.++.|.++||+.+||.
T Consensus        22 ~~~~~~g~l~pll~vy~kQ-LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~   78 (618)
T KOG3762|consen   22 FFGARFGSLFPLLAVYFKQ-LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRP   78 (618)
T ss_pred             eeeecccccchHHHHHHHH-cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence            3344455567788888888 89999999999999999999999999999999999875

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.35  E-value=3.2  Score=40.33  Aligned_cols=115  Identities=14%  Similarity=0.050  Sum_probs=79.0

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHH------HHHHHHHHHHhhh----hH-HHHHHHHH
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINS------VFAFLVPVAAGHS----IL-ALSIIRFI   95 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~------~~~~~~~~~~~~~----~~-~~~~~r~l   95 (455)
                      +.-|+++..+|..-+.-.+....+.+....+.+|+|   .++....      ..++...+....+    +. .++.+-.+
T Consensus       286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~  365 (432)
T PF06963_consen  286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL  365 (432)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence            345899999999999999999999999999999999   2222211      1122222222111    12 44444444


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHH
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL  144 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~  144 (455)
                      .=+|.=..-....-++-|..|++|||...+.-....++-..+-..++-.
T Consensus       366 SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii  414 (432)
T PF06963_consen  366 SRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII  414 (432)
T ss_pred             HHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4444444567778889999999999999999988888877777666543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098|consensus

Probab=91.26  E-value=4.9  Score=39.23  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             hH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHh
Q psy3467          86 IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL  145 (455)
Q Consensus        86 ~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l  145 (455)
                      ++ ..++.-++.|++-+......+.++++.. +++|..+.++.-.-..++.+++-......
T Consensus       352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  352 SYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            35 7778889999999999999999999999 68899999998888888777765555433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=89.66  E-value=5.4  Score=39.05  Aligned_cols=175  Identities=10%  Similarity=0.083  Sum_probs=94.0

Q ss_pred             HHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc----------ccCCCC---chhHHHhhHHHHHHHHHhh
Q psy3467         107 THALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY----------GFAGGW---PSIFYVFGLVGAVWSVAFL  173 (455)
Q Consensus       107 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~----------~~~~~w---r~~f~~~~~~~~~~~i~~~  173 (455)
                      .-...-...++++++.+......+.++|..++..+--.+...          ..+.|.   ..-..+.+.+.++..+...
T Consensus       139 VDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~  218 (544)
T PF13000_consen  139 VDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVA  218 (544)
T ss_pred             eehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHh
Confidence            334444556788898888877777777777776554333220          000111   1122344555555566666


Q ss_pred             hhcccCCCCCCCC--Ch---hHHHHHhhhcccccCC--CCCCCCC-------hhhhhcChhHHHHHHHHHHHHHHHHHHH
Q psy3467         174 LYCYEEPEAHPNI--AE---DERKYIMSSVWGLAGV--ASSPPVP-------WKDIVSSLPFWAILIAHMGQNYGYETLM  239 (455)
Q Consensus       174 ~~~~e~~~~~~~~--~~---~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (455)
                      ++.+|.|..+...  ++   .+.+..+...+.++.+  ..++..+       ..+++|-|.+..+.+.....-.++...-
T Consensus       219 ~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~d  298 (544)
T PF13000_consen  219 FFKKEKPHSESLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQAND  298 (544)
T ss_pred             eEeecccccccCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccch
Confidence            6677765432111  10   0000000000001111  0111112       2345667788877777777777776666


Q ss_pred             hhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         240 TELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       240 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      .....-+.| .|++.++.++.    .+..+..+++.++++.|+.+.+
T Consensus       299 a~T~LKLlE-kG~~KE~LAl~----~li~~P~qii~~~~~~Kws~g~  340 (544)
T PF13000_consen  299 AVTSLKLLE-KGLSKEDLALL----VLIDFPFQIILPYYIGKWSAGS  340 (544)
T ss_pred             hhhHHHHHH-cCCCHHHhHHH----HHHhhhHHHHHHHHhhhhhcCC
Confidence            666666666 79999887555    4666777778888877776543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=88.59  E-value=1.3  Score=39.44  Aligned_cols=56  Identities=14%  Similarity=0.037  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         230 GQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ......+.+..|.|..- +++|+|.+|...+...-.++..+| ++.|.+.||.|++.+
T Consensus        13 ~~~Gt~Y~Fs~yS~~Lk-~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~   68 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQLK-SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVV   68 (250)
T ss_pred             HhcCcccchhhhhHHHH-HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHH
Confidence            33344555666666655 459999999999988888888775 889999999998743

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=86.32  E-value=0.94  Score=35.57  Aligned_cols=28  Identities=21%  Similarity=0.174  Sum_probs=23.5

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         260 LSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ..+...++..+++++.+++.||++||+.
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~   30 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRFGRKPV   30 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhcchhHH
Confidence            4456678889999999999999999864

>KOG1479|consensus

Probab=85.76  E-value=18  Score=34.60  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCc
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTE  119 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~  119 (455)
                      ..++.-.+.+.+.|..+.......++ +|+|.
T Consensus       119 vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen  119 VTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             HHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence            56666777788888777776666655 45454

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=84.62  E-value=11  Score=36.90  Aligned_cols=49  Identities=16%  Similarity=0.115  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL  141 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i  141 (455)
                      ..++.-++.|++.+..+.....+.+ .+|++.    +..+..+.+++.+++.++
T Consensus       108 ~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       108 TTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHH
Confidence            6666777889998888887777766 456443    444455555555554443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=84.34  E-value=19  Score=32.06  Aligned_cols=25  Identities=4%  Similarity=-0.346  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467         225 LIAHMGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~  249 (455)
                      .+...+.....++....=..|.+++
T Consensus       184 G~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  184 GIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHhC
Confidence            3333444455555555555566663

The region concerned is approximately 280 residues long.

>KOG4332|consensus

Probab=83.22  E-value=5  Score=35.85  Aligned_cols=127  Identities=17%  Similarity=0.206  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhHHh--------HHHHHHHHHHHHHHHHHh-----hhhH-HHHHHHHHHhhcccCch
Q psy3467          39 QGYVLSSFFYGYVLTQIPFGILAKKYG--------IGMLINSVFAFLVPVAAG-----HSIL-ALSIIRFIQGLGEGPIV  104 (455)
Q Consensus        39 ~~~~~s~~~l~~~~~~~~~g~l~dr~G--------~~l~~~~~~~~~~~~~~~-----~~~~-~~~~~r~l~G~~~~~~~  104 (455)
                      -|.+.+.++++.++|+-+..++..|-.        +.+..... ........+     -.+. .-+++..+.-.+.|..+
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a-~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIA-ALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHH-HHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            488999999999999999988877655        11111111 111111111     1122 22344444455677889


Q ss_pred             hhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhc-ccCCCCchhHHHhhHHHHHHHH
Q psy3467         105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY-GFAGGWPSIFYVFGLVGAVWSV  170 (455)
Q Consensus       105 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~-~~~~~wr~~f~~~~~~~~~~~i  170 (455)
                      |....+=.++.|+++|+..+.++-.-.++=.+++-    +-.+. ....+-|..|-+..+...+..+
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvL----ynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL----YNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh----eecccccCccccchhhhhhHHHHHHHHH
Confidence            99999999999999999998888765554333221    11110 0013556777666655544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	455
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-40
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  149 bits (379), Expect = 1e-40
 Identities = 40/301 (13%), Positives = 105/301 (34%), Gaps = 13/301 (4%)

Query: 34  WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAG--HS 85
           ++  + G+ LS     Y  ++   G ++ +         G+++ +     +        S
Sbjct: 59  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 118

Query: 86  ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL 145
           I  + ++ F+ G  +G   P     +  W    ER  + +        G      L  L 
Sbjct: 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178

Query: 146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAH--PNIAEDERKYIMSSVWGLAG 203
               +   W +  Y+      + ++       + P++   P I E +  Y          
Sbjct: 179 --MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 236

Query: 204 VASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSAL 263
             ++  +  + ++ +   W I IA++        ++   PT++K+V HF + ++     L
Sbjct: 237 ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL 296

Query: 264 PYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMV 323
              A    ++   +++D +        T    +    +  ++ +     +  +    ++V
Sbjct: 297 YEYAGIPGTLLCGWMSDKVFRG-NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355

Query: 324 L 324
           +
Sbjct: 356 I 356

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 48/305 (15%), Positives = 97/305 (31%), Gaps = 59/305 (19%)

Query: 42  VLSSFFYGYVLTQIPFGILAKKYG------IGMLI---NSVFAFLVPVAAGHSILALSII 92
           V+ ++   Y ++Q+ +G ++ + G      +GM I    ++ A         S+  L   
Sbjct: 40  VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----SLTVLIAA 94

Query: 93  RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAG 152
             +QG+G G        L       T+     + +  G     + +  + GLL       
Sbjct: 95  SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW--- 151

Query: 153 GWPSIFYVFGLVGAV--WSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPV 210
            W + +    ++ A   +S+A  +     PE  P   +  R  +++S   L         
Sbjct: 152 NWRACYLFLLVLCAGVTFSMARWM-----PETRP--VDAPRTRLLTSYKTL--------- 195

Query: 211 PWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWI 270
                  +  F   L+  +G   G           M  VL  +      L  LP  A + 
Sbjct: 196 -----FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250

Query: 271 FSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESP 330
            + FA           +FS              ++   +I      +   +    G  + 
Sbjct: 251 GAWFAGRPNK------RFS-------------TLMWQSVICCLLAGLLMWIPDWFGVMNV 291

Query: 331 IVVVL 335
             +++
Sbjct: 292 WTLLV 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	455
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.93
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.81
2xut_A	524	Proton/peptide symporter family protein; transport	99.73
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.23
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.86
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.84
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.48
2xut_A	524	Proton/peptide symporter family protein; transport	98.08

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=6.4e-28  Score=235.72  Aligned_cols=275  Identities=13%  Similarity=0.125  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh-
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG-   83 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~-   83 (455)
                      ....+........+.+.+|.+.+|+ .+.++.+++.+++.++..++++++|+++||+|   ..+....+..+......+ 
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  112 (451)
T 1pw4_A           34 FFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV  112 (451)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence            3444555555566677788899999 99999999999999999999999999999999   455555555566666666 


Q ss_pred             ---hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-CchhH
Q psy3467          84 ---HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIF  158 (455)
Q Consensus        84 ---~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f  158 (455)
                         ++++ .++++|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+.   .| ||+.|
T Consensus       113 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f  189 (451)
T 1pw4_A          113 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAAL  189 (451)
T ss_dssp             HHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCT
T ss_pred             hhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHH
Confidence               6777 9999999999999999999999999999999999999999999999999999999998887   78 99999


Q ss_pred             HHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCC--hhhhhcChhHHHHHHHHHHHHHHHH
Q psy3467         159 YVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVP--WKDIVSSLPFWAILIAHMGQNYGYE  236 (455)
Q Consensus       159 ~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  236 (455)
                      ++.+++.++..++.++++||+|++++..++++.+...+...+++.+++....+  .++.+|+|.++...+..++......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
T 1pw4_A          190 YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY  269 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            99999888877777888898876543222111100000000000000111111  4677889999999999999999999


Q ss_pred             HHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHh--hhcc
Q psy3467         237 TLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSM--ITSE  286 (455)
Q Consensus       237 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~  286 (455)
                      ....+.|.++++.+|+++.+.+.+.+...++..++.++.+++.||+  ++|+
T Consensus       270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  321 (451)
T 1pw4_A          270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  321 (451)
T ss_dssp             HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            9999999999988899999999999999999999999999999999  7764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=5.5e-27  Score=228.22  Aligned_cols=261  Identities=13%  Similarity=0.113  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHH---
Q psy3467           8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVA---   81 (455)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~---   81 (455)
                      ....++.........+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|   ..+....+..+.....   
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  111 (438)
T 3o7q_A           32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA  111 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence            3344555555566777788899999999999999999999999999999999999999   4444444444444445   


Q ss_pred             HhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH-hcccCCC------
Q psy3467          82 AGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS-EYGFAGG------  153 (455)
Q Consensus        82 ~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~-~~~~~~~------  153 (455)
                      ..++++ .+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+.++|..++|.+++.+. +.   .+      
T Consensus       112 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~~~~  188 (438)
T 3o7q_A          112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN---VPHQSQDV  188 (438)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS---SCCCCHHH
T ss_pred             cccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccccccc
Confidence            666778 99999999999999999999999999999999999999999999999999999999998 54   33      


Q ss_pred             -------------------CchhHHHhhHHHHHHHHHhhhh-cccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChh
Q psy3467         154 -------------------WPSIFYVFGLVGAVWSVAFLLY-CYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWK  213 (455)
Q Consensus       154 -------------------wr~~f~~~~~~~~~~~i~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (455)
                                         ||+.|++.+.+.++..++.++. .||+++++++.+                ++++...+++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----------------~~~~~~~~~~  252 (438)
T 3o7q_A          189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA----------------KQGSFSASLS  252 (438)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----------------STTSHHHHHH
T ss_pred             cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc----------------cccchhhhHH
Confidence                               9999988877766644443332 344332211100                0122234567


Q ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         214 DIVSSLPFWAILIAHMGQNYGYETLMTELPTF-MKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +++|+|.++...+..++..........+.|.| +++.+|.++.+.+...+...++..++.++.+++.||+++|+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  327 (438)
T 3o7q_A          253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_dssp             HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            88999999999999888888888889999999 888779999999999999999999999999999999998854

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.93  E-value=4e-26  Score=217.52  Aligned_cols=257  Identities=16%  Similarity=0.193  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh
Q psy3467           7 TAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG   83 (455)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~   83 (455)
                      .....++.........+.+|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|   ..+.......+.......
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   84 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT   84 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence            34455666666777778888889999999999999999999999999999999999999   444444444455555555


Q ss_pred             hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467          84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG  162 (455)
Q Consensus        84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~  162 (455)
                      ++++ .+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+.   .+||+.|++.+
T Consensus        85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~  161 (375)
T 2gfp_A           85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLL  161 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHH
Confidence            6677 9999999999999999999999999999999999999999999999999999999999887   79999999988


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467         163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL  242 (455)
Q Consensus       163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (455)
                      ++.++..+...+.+||++++++++                   ++...++++++|+|+++...+..++..........+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPR-------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACS  222 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCC-------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCcccCCCCccc-------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            888876666667778765432211                   2233456788999999999998888888999999999


Q ss_pred             hHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467         243 PTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS  285 (455)
Q Consensus       243 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  285 (455)
                      |.++++.+|.++.+.+...+...++..++.++.+++.||.+++
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~  265 (375)
T 2gfp_A          223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  265 (375)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998899999999999999999999999999999998873

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.90  E-value=3.7e-23  Score=204.32  Aligned_cols=275  Identities=13%  Similarity=0.129  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHhhhhhcccCccc--------ccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH
Q psy3467          11 IFVSRVINTKLTRRVHHKDGSF--------IWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP   79 (455)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~--------~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~   79 (455)
                      .++.+.....++..++.+++++        +.++++.|++.+++.+|..+|++++|+++||+|   ..++...+..++..
T Consensus        21 ~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i  100 (491)
T 4gc0_A           21 GLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGV  100 (491)
T ss_dssp             HHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3444444444455555554444        334567899999999999999999999999999   44455555555555


Q ss_pred             HHH------------------hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHH
Q psy3467          80 VAA------------------GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP  140 (455)
Q Consensus        80 ~~~------------------~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~  140 (455)
                      .++                  .++++ +++++|+++|++.|...+....+++|+.|+++|++..++.+.+..+|..+++.
T Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~  180 (491)
T 4gc0_A          101 GSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYC  180 (491)
T ss_dssp             HHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhh
Confidence            555                  36777 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhccc-----CCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCC-hhHH-HHHhhhccc-----------cc
Q psy3467         141 LSGLLSEYGF-----AGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIA-EDER-KYIMSSVWG-----------LA  202 (455)
Q Consensus       141 i~~~l~~~~~-----~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~-~~~~-~~~~~~~~~-----------~~  202 (455)
                      ++..+.....     ..+||+.+....+..++ .+...++.||+|++...+. +++. +..++...+           +.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  259 (491)
T 4gc0_A          181 VNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHS  259 (491)
T ss_dssp             HHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHH
Confidence            9887765311     13577777776666665 5666778999987431111 1111 111100000           00


Q ss_pred             CCCCCCCCChhhhhcChhHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHH
Q psy3467         203 GVASSPPVPWKDIVSSLPFW-AILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADS  281 (455)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr  281 (455)
                      .+++++.......++.++.. ......+......+.+..+.|.+.++ .+.+..+.........+...++.++++++.||
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr  338 (491)
T 4gc0_A          260 LDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDK  338 (491)
T ss_dssp             HHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            00011112222333344433 33344445555566666777777666 67777777777777888999999999999999


Q ss_pred             hhhccc
Q psy3467         282 MITSEK  287 (455)
Q Consensus       282 ~g~r~~  287 (455)
                      +|||+.
T Consensus       339 ~Grr~~  344 (491)
T 4gc0_A          339 FGRKPL  344 (491)
T ss_dssp             HCSHHH
T ss_pred             hcCcch
Confidence            999864

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.90  E-value=2.7e-22  Score=198.15  Aligned_cols=256  Identities=16%  Similarity=0.127  Sum_probs=183.6

Q ss_pred             CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCc
Q psy3467          29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPI  103 (455)
Q Consensus        29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~  103 (455)
                      ++|+|.+.++.+++.+++.++..+++++.|+++|| +|   .......+..+.......+++. .+++.|+++|++.+..
T Consensus        46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  125 (491)
T 4aps_A           46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL  125 (491)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence            45599999999999999999999999999999999 89   4555555556666667777788 9999999999999999


Q ss_pred             hhhHHHHHhcccCCCc--chhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467         104 VPCTHALLAKWIPPTE--RSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE  181 (455)
Q Consensus       104 ~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~  181 (455)
                      .+...+++.|++|+++  |+.++++++.+.++|..++|.+++.+.+.   .|||+.|++.++..++..+...+..|+..+
T Consensus       126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            9999999999999988  77888889999999999999999999998   899999999877776655555444443322


Q ss_pred             CC---C--CCChhHHHHHhhh----------------cccccC----------------------CCCCCCCChhhhhcC
Q psy3467         182 AH---P--NIAEDERKYIMSS----------------VWGLAG----------------------VASSPPVPWKDIVSS  218 (455)
Q Consensus       182 ~~---~--~~~~~~~~~~~~~----------------~~~~~~----------------------~~~~~~~~~~~~~~~  218 (455)
                      ++   +  ..++++++...+.                ..+..+                      ..+++..+..+..+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (491)
T 4aps_A          203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV  282 (491)
T ss_dssp             SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred             ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            11   1  1111221111111                000000                      000011111111222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         219 LPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      ...+...+.....+..........|.+.++..+.+..+.+.......++..++.++.+++.||++||+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~  351 (491)
T 4aps_A          283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP  351 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC
Confidence            334445555555555566667788889988788887888999999999999999999999999999864

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.81  E-value=8.1e-20  Score=176.37  Aligned_cols=256  Identities=12%  Similarity=0.098  Sum_probs=162.2

Q ss_pred             HHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHH---HHHHHHhhhhH--
Q psy3467          17 INTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAF---LVPVAAGHSIL--   87 (455)
Q Consensus        17 ~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~---~~~~~~~~~~~--   87 (455)
                      ....+.+.+|. +++++|.|+++.|++.+.+.++..++++++|+++||+|   ..+....+..+   ........+..  
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555 45679999999999999999999999999999999999   33322222211   11111111111  


Q ss_pred             HHHHHHHHHhhcccCchhhHHHHHhcccCC--CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH
Q psy3467          88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPP--TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG  165 (455)
Q Consensus        88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~  165 (455)
                      .+...+.+.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++.+.+    .+||+.|++.++..
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCA  177 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHH
Confidence            234556676766655544444445555433  456777888888899999999999999876    48999999877765


Q ss_pred             HHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy3467         166 AVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTF  245 (455)
Q Consensus       166 ~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (455)
                      ++..+..++..||+++..+. ++++          ++++++....++++++|+|+++...+..+...........+.|.|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (417)
T 2cfq_A          178 LILAVLLFFAKTDAPSSATV-ANAV----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF  246 (417)
T ss_dssp             TTHHHHSCSSCCCCSCSSCS-SSSS----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccccccccc-cccc----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            54333333333333221100 0000          000001112234678889988877666555555555556678888


Q ss_pred             HHHHhcC---ccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         246 MKQVLHF---NIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       246 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      +++.++.   +..+.+...+...++..++.++.+++.||++||+.
T Consensus       247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  291 (417)
T 2cfq_A          247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence            8765442   24445677777778888999999999999998854

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.73  E-value=3.4e-17  Score=162.93  Aligned_cols=144  Identities=20%  Similarity=0.233  Sum_probs=121.2

Q ss_pred             cCcccc------cccchhhHHHHHHHHHHHHhhhhhHHHHhHH-h---HHHHHHHHHHHHHHHHHhhh-hH-HHHHHHHH
Q psy3467          28 KDGSFI------WTTAEQGYVLSSFFYGYVLTQIPFGILAKKY-G---IGMLINSVFAFLVPVAAGHS-IL-ALSIIRFI   95 (455)
Q Consensus        28 ~~~~~~------~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-G---~~l~~~~~~~~~~~~~~~~~-~~-~~~~~r~l   95 (455)
                      +.+++|      .+..+.+++.+++.++..+++++.|+++||+ |   ..+....+..+.......++ +. .+++.|++
T Consensus        39 l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  118 (524)
T 2xut_A           39 LMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFL  118 (524)
T ss_dssp             HHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             HHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            345677      9999999999999999999999999999999 9   44444445555555556666 67 89999999


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHH---HHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAF---VYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      +|++.+...+...+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+.+.   .+||+.|++.+++.++..+..
T Consensus       119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999877666   8899999999999999999887   899999999888776644444


Q ss_pred             hh
Q psy3467         173 LL  174 (455)
Q Consensus       173 ~~  174 (455)
                      ++
T Consensus       196 ~~  197 (524)
T 2xut_A          196 WL  197 (524)
T ss_dssp             HS
T ss_pred             HH
Confidence            33

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.23  E-value=7.5e-11  Score=114.49  Aligned_cols=153  Identities=11%  Similarity=0.039  Sum_probs=120.5

Q ss_pred             HhhhhhcccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHH--h---HHHHHHHHHH-HHHHHHHhh--hhH-HH
Q psy3467          20 KLTRRVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY--G---IGMLINSVFA-FLVPVAAGH--SIL-AL   89 (455)
Q Consensus        20 ~l~~~~~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--G---~~l~~~~~~~-~~~~~~~~~--~~~-~~   89 (455)
                      .+...+|...++ +|.+..+.+++.+...++..++.++.|+++||+  |   .......+.. +........  .+. .+
T Consensus       270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (451)
T 1pw4_A          270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  349 (451)
T ss_dssp             HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence            344444544444 899999999999999999999999999999999  8   2222322322 233333333  244 67


Q ss_pred             HHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHH-HHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHH
Q psy3467          90 SIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQF-GTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVW  168 (455)
Q Consensus        90 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~  168 (455)
                      .+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+.   .||+..|++.+++.++.
T Consensus       350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~  426 (451)
T 1pw4_A          350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILA  426 (451)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHH
Confidence            77888999988888888899999999999999999999999999 999999999999998   89999999988887775


Q ss_pred             HHHhhhh
Q psy3467         169 SVAFLLY  175 (455)
Q Consensus       169 ~i~~~~~  175 (455)
                      .++.++.
T Consensus       427 ~~~~~~~  433 (451)
T 1pw4_A          427 VILLIVV  433 (451)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.06  E-value=9.8e-10  Score=105.60  Aligned_cols=145  Identities=12%  Similarity=0.071  Sum_probs=110.3

Q ss_pred             cccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHH
Q psy3467          34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHA  109 (455)
Q Consensus        34 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~  109 (455)
                      .+..+.++..++..++..++.++.|+++||+|   .......+..+........++. .+++..++.+++.+...+....
T Consensus       256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556788888888999999999999999999   2222222333333333444445 6777777888877666777789


Q ss_pred             HHhcccCCCcchhHHHH-HHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467         110 LLAKWIPPTERSRLGAF-VYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE  181 (455)
Q Consensus       110 ~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~  181 (455)
                      ++.|.+|++.|+++.+. ++....+|..++|.+++.+.+.   .|++..|.+.+++.++..++.++..||+++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99999999999999998 4788889999999999999887   788889988888877766666666666443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.91  E-value=2.6e-08  Score=96.10  Aligned_cols=133  Identities=14%  Similarity=0.031  Sum_probs=103.3

Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccCchhh
Q psy3467          30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPC  106 (455)
Q Consensus        30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  106 (455)
                      +.+|.+..+.++..+.+.++..++.++.|+++||+|   .......+..+........++......-++.|++.+...+.
T Consensus       288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  367 (438)
T 3o7q_A          288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPT  367 (438)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHH
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            345899999999999999999999999999999999   33333333333334444445553344448889999999999


Q ss_pred             HHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-CchhHHHhhHHHHH
Q psy3467         107 THALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIFYVFGLVGAV  167 (455)
Q Consensus       107 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f~~~~~~~~~  167 (455)
                      ..++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+.   .| ++..|++.++..++
T Consensus       368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA---AGNIPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH---HTSSGGGGHHHHHHHHH
T ss_pred             HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHH
Confidence            999999999855 888888877 5669999999999999988   77 99999876555444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.86  E-value=1.1e-08  Score=100.36  Aligned_cols=145  Identities=15%  Similarity=0.040  Sum_probs=108.8

Q ss_pred             ccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H--HH-----HHHHHHHHHHHHHHhh---------hhH-HHHHH
Q psy3467          31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I--GM-----LINSVFAFLVPVAAGH---------SIL-ALSII   92 (455)
Q Consensus        31 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~--~l-----~~~~~~~~~~~~~~~~---------~~~-~~~~~   92 (455)
                      .++.+..+.++..+...++..++.++.|++.||+| .  ..     .+..+..+........         .+. .+.+.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (491)
T 4aps_A          313 RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGS  392 (491)
T ss_dssp             SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHH
T ss_pred             HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence            35556577888999999999999999999999998 1  11     2222222222222221         133 67778


Q ss_pred             HHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467          93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus        93 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      -++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+    .+.++.|.+.+.+.++..++.
T Consensus       393 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          393 WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----KSEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----SSTTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHH
Confidence            8899999998899999999999999999999999999999999999999988866    467788888888877766666


Q ss_pred             hhhcccC
Q psy3467         173 LLYCYEE  179 (455)
Q Consensus       173 ~~~~~e~  179 (455)
                      +++.++.
T Consensus       469 ~~~~~~~  475 (491)
T 4aps_A          469 VFLSKRI  475 (491)
T ss_dssp             HHC----
T ss_pred             HHHHHHH
Confidence            6665554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.84  E-value=6.2e-08  Score=94.98  Aligned_cols=155  Identities=12%  Similarity=0.049  Sum_probs=103.2

Q ss_pred             cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH---HHH--HhhhhH-HHH-HHHHH
Q psy3467          26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV---PVA--AGHSIL-ALS-IIRFI   95 (455)
Q Consensus        26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~---~~~--~~~~~~-~~~-~~r~l   95 (455)
                      +.+.++.+.+............+...++.++.+.+.||+|   ..+.......+..   ...  ...+.. .++ ..-+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  380 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            3344455666666777777888889999999999999999   2222222111111   111  111222 222 22222


Q ss_pred             HhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc---cCCCCchhHHHhhHHHHHHHHHh
Q psy3467          96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG---FAGGWPSIFYVFGLVGAVWSVAF  172 (455)
Q Consensus        96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~---~~~~wr~~f~~~~~~~~~~~i~~  172 (455)
                      .+.+. ...+....+.+|.+|.+.|+++.++......+|..+++.+.+.+.+..   ...++.+.|++.+.++++..+..
T Consensus       381 ~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  459 (491)
T 4gc0_A          381 AAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  459 (491)
T ss_dssp             HHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            33333 345778899999999999999999999999999998887776553310   00467788899899998888888


Q ss_pred             hhhcccCCC
Q psy3467         173 LLYCYEEPE  181 (455)
Q Consensus       173 ~~~~~e~~~  181 (455)
                      ++++||++.
T Consensus       460 ~~~~PETkg  468 (491)
T 4gc0_A          460 WKFVPETKG  468 (491)
T ss_dssp             HHHCCCCTT
T ss_pred             HheecCCCC
Confidence            899999854

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.48  E-value=3.7e-08  Score=93.01  Aligned_cols=143  Identities=11%  Similarity=-0.013  Sum_probs=108.7

Q ss_pred             HHHHHHhhhhhcccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-HHHHHHHH-HHHHHH--HHHh--hhhH
Q psy3467          15 RVINTKLTRRVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-IGMLINSV-FAFLVP--VAAG--HSIL   87 (455)
Q Consensus        15 ~~~~~~l~~~~~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~~l~~~~~-~~~~~~--~~~~--~~~~   87 (455)
                      ......+....|...++ +|.++.+.+++.+...++..++.++.+++.||+| ........ ......  ....  .++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (375)
T 2gfp_A          212 LAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNV  291 (375)
T ss_dssp             HHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence            33334445556666555 8999999999999999999999999999999999 33322222 111111  1111  1234


Q ss_pred             -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh
Q psy3467          88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF  161 (455)
Q Consensus        88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~  161 (455)
                       .+.+..++.|++.+...+....++.|..| |+|+++.++.+....+|..++|.+.+.+.+.   .+++..+.+.
T Consensus       292 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~~~~~~~~~~  362 (375)
T 2gfp_A          292 WTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT---GQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccHHHHHH
Confidence             66778889999999899999999999998 8999999999999999999999999999877   6777777664

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.08  E-value=2e-06  Score=84.97  Aligned_cols=141  Identities=10%  Similarity=-0.002  Sum_probs=89.1

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHH----hHHh-------HHHHHHHHHHHHHHHHHhh---------hhH-HHHHHHHHH
Q psy3467          38 EQGYVLSSFFYGYVLTQIPFGILA----KKYG-------IGMLINSVFAFLVPVAAGH---------SIL-ALSIIRFIQ   96 (455)
Q Consensus        38 ~~~~~~s~~~l~~~~~~~~~g~l~----dr~G-------~~l~~~~~~~~~~~~~~~~---------~~~-~~~~~r~l~   96 (455)
                      ..+++.+...++..++.++.+++.    ||.|       ....+..+..+........         .+. .+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            345555665666677777776654    5554       1222222222222222221         233 677788999


Q ss_pred             hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCC---------chhHHHhhHHHHH
Q psy3467          97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGW---------PSIFYVFGLVGAV  167 (455)
Q Consensus        97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w---------r~~f~~~~~~~~~  167 (455)
                      |++.+...+....++.|..|+++|++++++.+....+|..++|.+.+.+.+... .+|         +..|++.+.+.++
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  494 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAIL  494 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998865300 123         3336666776666


Q ss_pred             HHHHhhhhcccC
Q psy3467         168 WSVAFLLYCYEE  179 (455)
Q Consensus       168 ~~i~~~~~~~e~  179 (455)
                      ..++.+++.++.
T Consensus       495 ~~~~~~~~~~~~  506 (524)
T 2xut_A          495 AAIVFALYARSY  506 (524)
T ss_dssp             HHHHHC------
T ss_pred             HHHHHHHHHHHh
Confidence            566555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	455
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-14
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	8e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 39/309 (12%), Positives = 102/309 (33%), Gaps = 8/309 (2%)

Query: 34  WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFL--VPVAAGHS 85
           ++  + G+ LS     Y  ++   G ++ +         G+++ +           A  S
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 86  ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL 145
           I  + ++ F+ G  +G   P     +  W    ER  + +        G      L  L 
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVA 205
             +            F  +        ++    +    P I E +  Y            
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235

Query: 206 SSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPY 265
           ++  +  + ++ +   W I IA++        ++   PT++K+V HF + ++     L  
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295

Query: 266 LAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLT 325
            A    ++   +++D +    + +       +      V       +  + +   +++  
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355

Query: 326 GSESPIVVV 334
               P++++
Sbjct: 356 LIYGPVMLI 364

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 26/247 (10%), Positives = 67/247 (27%), Gaps = 6/247 (2%)

Query: 34  WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL 87
            + ++ G + ++     +L Q  FG+L+ K G        +    V      +     +L
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 88  ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE 147
             +I+      G            A      + SR   F +  A+        L   +  
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 148 YGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASS 207
             F      +F++      + +V       + P +          +   S+     +   
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQ 219

Query: 208 PPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLA 267
           P + +  +          +        + +         +   +         +++ + A
Sbjct: 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFA 279

Query: 268 MWIFSMF 274
             I +  
Sbjct: 280 PLIINRI 286

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	455
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.68
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.23
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.2e-26  Score=219.29  Aligned_cols=264  Identities=13%  Similarity=0.120  Sum_probs=206.0

Q ss_pred             HhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh----hhH-HHHH
Q psy3467          20 KLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH----SIL-ALSI   91 (455)
Q Consensus        20 ~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~----~~~-~~~~   91 (455)
                      .++...|.++ |+|+|++|.|++.+++.+++.++++++|+++||+|   .......+..+.....+..    +++ .+++
T Consensus        43 ~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (447)
T d1pw4a_          43 NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV  121 (447)
T ss_dssp             SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred             HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Confidence            3444455554 58999999999999999999999999999999999   3333333333333333322    355 9999


Q ss_pred             HHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHH
Q psy3467          92 IRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA  171 (455)
Q Consensus        92 ~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~  171 (455)
                      .|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+..  .+||+.|++.+.+.++..++
T Consensus       122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~  199 (447)
T d1pw4a_         122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALF  199 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988776641  58999999999998888888


Q ss_pred             hhhhcccCCCCCCCCChhHHHHH--hhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3467         172 FLLYCYEEPEAHPNIAEDERKYI--MSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQV  249 (455)
Q Consensus       172 ~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (455)
                      .+++.+|+|++++....++.+..  ++..++.+++...++...++.++++.++......++.....+....+.|.++++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (447)
T d1pw4a_         200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV  279 (447)
T ss_dssp             HHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB
T ss_pred             HHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc
Confidence            88888888765543322221111  1111111111122333456778899999999988999999999999999999998


Q ss_pred             hcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhcc
Q psy3467         250 LHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSE  286 (455)
Q Consensus       250 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~  286 (455)
                      ++.+..+.+.......++..++.++.|++.||.++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  316 (447)
T d1pw4a_         280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN  316 (447)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc
Confidence            9999999999999999999999999999999999875

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.4e-16  Score=147.38  Aligned_cols=264  Identities=11%  Similarity=0.084  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhh
Q psy3467           9 YSIFVSRVINTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGH   84 (455)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~   84 (455)
                      ...+..........+.+|. +++++|+|+++.|++.+++.++..++++++|+++||+|   ..+.......+........
T Consensus        14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T d1pv7a_          14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444555566665 56779999999999999999999999999999999999   3333333333333322222


Q ss_pred             h----hH-HHHHHHHHHhhcccCchhhHHHHHhcccCC--CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchh
Q psy3467          85 S----IL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPP--TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSI  157 (455)
Q Consensus        85 ~----~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~  157 (455)
                      .    .. ..+..+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+.    +|+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~  169 (417)
T d1pv7a_          94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFV  169 (417)
T ss_dssp             THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----ccccc
Confidence            2    22 445666777666666655555555544433  3455667788888899999999999998874    67777


Q ss_pred             HHHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHH
Q psy3467         158 FYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYET  237 (455)
Q Consensus       158 f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (455)
                      +........+..++..+..+|+++.+++.++++++           +++.......+..+++..+...............
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T d1pv7a_         170 FWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN-----------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC-----------CCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh-----------cccccccccccccccccccchhhhhHHHHHHHHh
Confidence            77766666666777777777776654432222211           0011222223444444444443333333333333


Q ss_pred             HHhhhhHHHHH---HhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467         238 LMTELPTFMKQ---VLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK  287 (455)
Q Consensus       238 ~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  287 (455)
                      .....+.+...   ..+.+..+.+.......++..++..+.+++.||.++|+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~  291 (417)
T d1pv7a_         239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH
T ss_pred             hhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc
Confidence            33333332221   233445566677777788888889999999999998854

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.6e-11  Score=111.47  Aligned_cols=152  Identities=11%  Similarity=0.042  Sum_probs=125.5

Q ss_pred             hcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcc
Q psy3467          25 VHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGE  100 (455)
Q Consensus        25 ~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~  100 (455)
                      .....++.+.+....+...+...++..++..+.+++.||+|   .......+..+........++. .+++..++.|++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence            34445566777888899999999999999999999999999   3444444444555555566666 8888999999999


Q ss_pred             cCchhhHHHHHhcccCCCcchhHHHHH-HhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccC
Q psy3467         101 GPIVPCTHALLAKWIPPTERSRLGAFV-YAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEE  179 (455)
Q Consensus       101 ~~~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~  179 (455)
                      +...+...+++.|.+|+|+|++..++. +....+|..++|.+++.+.+.   .|++..|++.+++.++..++..+.++++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999985 456789999999999999998   8999999999988888777777766653

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5e-10  Score=105.94  Aligned_cols=147  Identities=12%  Similarity=0.066  Sum_probs=112.5

Q ss_pred             cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh------HHHHHHHHHHHHHHHHH--hhhhH-HHHHHHHHHhh
Q psy3467          28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAA--GHSIL-ALSIIRFIQGL   98 (455)
Q Consensus        28 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G------~~l~~~~~~~~~~~~~~--~~~~~-~~~~~r~l~G~   98 (455)
                      +.++++.+..+.++..+...++..++.++.|+++||++      ..+..............  ..++. ...+.-++.|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  355 (447)
T d1pw4a_         276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  355 (447)
T ss_dssp             BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999998      12222222222222111  12334 66677788898


Q ss_pred             cccCchhhHHHHHhcccCCCcchhHHHHHHhhHHH-HHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcc
Q psy3467          99 GEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQF-GTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY  177 (455)
Q Consensus        99 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~  177 (455)
                      +.+...+....+..|.+|+++|+++.++.+....+ |..++|.+.+.+.+.   .||+..|++.+...++..++...+.+
T Consensus       356 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999887766 567889999999998   89999998887777765555555443