Psyllid ID: psy3469

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDAPTPRAATKRDASNNNRTSYASDVEDTVQ
Secondary Structure (PSIPRED)
cEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccEEEEEEEEEEEHccHHHHccccEccccccccHHHHHHHHHHHHHcHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
milgqygpAVCLVAAsytgcdpyltVGILTIglgfngavysgfkvnhldisprFAGILMSFTNCLANLAGLLAPIIagyviqgkptQAAWRVVFVAAAVVYLFSSTFYIFaasgdrqpwdnpnndaptpraatkrdasnnnrtsyasdvedtvq
Flexible Loop (DISEMBL)
MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAsgdrqpwdnpnnDAPTpraatkrdasnnnrtsyasdvedtvq
Low Complexity Region (SEG)
MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQaawrvvfvaaavvYLFSSTFYIFAASGDRQPWDNPNNDAPTPRAATKRDASNNNRTSYASDVEDTVQ
Disordered region (IsUnstruct)
**LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA******************************************
Disordered Region (DISOPRED)
MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWD**********************************
Disordered Region (DISEMBL)
MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDA****************************
Disordered Region (DISPRO)
MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR**************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDAPTPRAATKRDASNNNRTSYASDVEDTVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q9V7S5	529	Putative inorganic phosph	yes	N/A	0.850	0.247	0.609	3e-42
O61369	483	Putative inorganic phosph	N/A	N/A	0.941	0.300	0.567	3e-41
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	N/A	0.759	0.236	0.423	8e-20
Q9NRA2	495	Sialin OS=Homo sapiens GN	yes	N/A	0.759	0.236	0.423	1e-19
Q8BN82	495	Sialin OS=Mus musculus GN	yes	N/A	0.759	0.236	0.432	2e-19
Q9JI12	582	Vesicular glutamate trans	no	N/A	0.636	0.168	0.424	3e-19
Q9P2U8	582	Vesicular glutamate trans	no	N/A	0.636	0.168	0.424	4e-19
A6QLI1	582	Vesicular glutamate trans	no	N/A	0.636	0.168	0.424	4e-19
Q8BLE7	582	Vesicular glutamate trans	no	N/A	0.636	0.168	0.414	1e-18
Q6INC8	576	Vesicular glutamate trans	N/A	N/A	0.636	0.170	0.414	3e-18

>sp|Q9V7S5|PICO_DROME Putative inorganic phosphate cotransporter OS=Drosophila melanogaster GN=Picot PE=1 SV=1

 Score =  170 bits (431), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 96/133 (72%), Gaps = 2/133 (1%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQYGP V L+AASYTGCD  LT+ ILTIG+G NG +YSGFK+NHLD++PRFAG LMS T
Sbjct: 375 IGQYGPGVALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSIT 434

Query: 63  NCLANLAGLLAPIIAGYVIQ--GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWD 120
           NC ANLAGLLAPI AG++I    KP    W++VF  AA VY+   TFY    SG+RQ WD
Sbjct: 435 NCSANLAGLLAPIAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWD 494

Query: 121 NPNNDAPTPRAAT 133
           NP +D   P   T
Sbjct: 495 NPEDDEQKPALQT 507

May be an inorganic phosphate cotransporter.
Drosophila melanogaster (taxid: 7227)

>sp|O61369|PICO_DROAN Putative inorganic phosphate cotransporter OS=Drosophila ananassae GN=Picot PE=3 SV=1

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 100/148 (67%), Gaps = 3/148 (2%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQYGP + L+AASYTGCD  LT+ ILTIG+G NG +YSGFK+NHLD++PRFAG LMS T
Sbjct: 329 IGQYGPGLALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSIT 388

Query: 63  NCLANLAGLLAPIIAGYVIQ--GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWD 120
           NC ANLAGLLAPI AG +I    KP    W++VF  AA VY+   TFY    SG+RQ WD
Sbjct: 389 NCSANLAGLLAPIAAGNLISDPSKPVMGQWQIVFFIAAFVYIICGTFYNIFGSGERQFWD 448

Query: 121 NPNNDAPTPRAATKRDASNNNRTSYASD 148
           NP+ D   P A      +N  R S  S 
Sbjct: 449 NPSEDEQKP-ALESSSTTNPPRLSNGSS 475

May be an inorganic phosphate cotransporter.

Drosophila ananassae (taxid: 7217)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 2   ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
           ++G  GPA+ LVAA + GCD  L V  LTI     G   SGF +NHLDI+P +AGIL+  
Sbjct: 369 LIGMIGPAIFLVAAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGI 428

Query: 62  TNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPW 119
           TN  A + G++ PIIA   +  + T   W+ VF  AA + +F + F+   A G+ Q W
Sbjct: 429 TNTFATIPGMIGPIIA-RSLTPENTIGEWQTVFCIAAAINVFGAIFFTLFAKGEVQNW 485

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

>sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 2   ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
           ++G  GPAV LVAA + GCD  L V  LTI     G   SGF +NHLDI+P +AGIL+  
Sbjct: 369 LIGMIGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGI 428

Query: 62  TNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPW 119
           TN  A + G++ P+IA  +     T   W+ VF  AA + +F + F+   A G+ Q W
Sbjct: 429 TNTFATIPGMVGPVIAKSLTPDN-TVGEWQTVFYIAAAINVFGAIFFTLFAKGEVQNW 485

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q8BN82|S17A5_MOUSE Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 2   ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
           ++G  GPAV LVAA + GCD  L V  LTI     G   SGF +NHLDI+P +AGIL+  
Sbjct: 369 LVGMVGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFASSGFSINHLDIAPSYAGILLGI 428

Query: 62  TNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPW 119
           TN  A + G+  PIIA  +     T   W+ VF  AA + +F + F+   A G+ Q W
Sbjct: 429 TNTFATIPGMTGPIIAKSLTPDN-TIREWQTVFCIAAAINVFGAIFFTLFAKGEVQSW 485

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Mus musculus (taxid: 10090)

>sp|Q9JI12|VGLU2_RAT Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 24  LTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83
           + +  L + +GF+G   SGF VNHLDI+PR+A ILM  +N +  L+G++ PII G + + 
Sbjct: 411 VAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN 470

Query: 84  KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           K ++  W+ VF+ AA+V+     FY   ASG++QPW +P
Sbjct: 471 K-SREEWQYVFLIAALVHYGGVIFYALFASGEKQPWADP 508

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also play a role in the endocrine glutamatergic system of other tissues such as pineal gland and pancreas. May also mediate the transport of inorganic phosphate.

Rattus norvegicus (taxid: 10116)

>sp|Q9P2U8|VGLU2_HUMAN Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 24  LTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83
           + +  L + +GF+G   SGF VNHLDI+PR+A ILM  +N +  L+G++ PII G + + 
Sbjct: 411 VAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN 470

Query: 84  KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           K ++  W+ VF+ AA+V+     FY   ASG++QPW +P
Sbjct: 471 K-SREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADP 508

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Homo sapiens (taxid: 9606)

>sp|A6QLI1|VGLU2_BOVIN Vesicular glutamate transporter 2 OS=Bos taurus GN=SLC17A6 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 24  LTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83
           + +  L + +GF+G   SGF VNHLDI+PR+A ILM  +N +  L+G++ PII G + + 
Sbjct: 411 VAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN 470

Query: 84  KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           K ++  W+ VF+ AA+V+     FY   ASG++QPW +P
Sbjct: 471 K-SREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADP 508

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Bos taurus (taxid: 9913)

>sp|Q8BLE7|VGLU2_MOUSE Vesicular glutamate transporter 2 OS=Mus musculus GN=Slc17a6 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 24  LTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83
           + +  L + +GF+G   SGF VNHLDI+PR+A ILM  ++ +  L+G++ PII G + + 
Sbjct: 411 VAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISDGVGTLSGMVCPIIVGAMTKN 470

Query: 84  KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           K ++  W+ VF+ AA+V+     FY   ASG++QPW +P
Sbjct: 471 K-SREEWQYVFLIAALVHYGGVIFYALFASGEKQPWADP 508

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Mus musculus (taxid: 10090)

>sp|Q6INC8|VGLU1_XENLA Vesicular glutamate transporter 1 OS=Xenopus laevis GN=slc17a7 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 1/99 (1%)

Query: 24  LTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83
           + +  L + +GF+G   SGF VNHLDI+PR+A ILM  +N +  L+G++ P+I G + + 
Sbjct: 403 VAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMTKH 462

Query: 84  KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           K T+  W+ VF+ A++V+     FY   ASG++QPW  P
Sbjct: 463 K-TREEWQYVFLIASLVHYGGVVFYGIFASGEKQPWAEP 500

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
328709271	617	PREDICTED: putative inorganic phosphate	0.954	0.238	0.664	5e-53
328709269	632	PREDICTED: putative inorganic phosphate	0.954	0.232	0.664	6e-53
193709300	553	PREDICTED: putative inorganic phosphate	0.941	0.262	0.664	4e-51
345489012	537	PREDICTED: putative inorganic phosphate	0.948	0.271	0.611	5e-50
157114768	530	inorganic phosphate cotransporter, putat	0.935	0.271	0.625	3e-48
170038579	522	inorganic phosphate cotransporter [Culex	0.857	0.252	0.666	4e-47
48097362	517	PREDICTED: putative inorganic phosphate	0.863	0.257	0.671	4e-47
312378402	569	hypothetical protein AND_10069 [Anophele	0.811	0.219	0.688	4e-47
307212339	474	Putative inorganic phosphate cotransport	0.928	0.301	0.622	2e-46
118792381	530	AGAP012251-PA [Anopheles gambiae str. PE	0.922	0.267	0.620	2e-46

>gi|328709271|ref|XP_001951876.2| PREDICTED: putative inorganic phosphate cotransporter-like isoform 1 [Acyrthosiphon pisum]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 118/152 (77%), Gaps = 5/152 (3%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQ+GPA+ L+AASYTGCDPYLTV ILT+G+G NGA+YSGFKVNHLDISPRFAGILMS T
Sbjct: 471 IGQFGPAIALIAASYTGCDPYLTVAILTVGVGLNGAIYSGFKVNHLDISPRFAGILMSLT 530

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NCLANLAGLLAPI+AGYVI  +PTQAAWRVVF+ +AVVY+   T Y+   +G RQPWDNP
Sbjct: 531 NCLANLAGLLAPIVAGYVIDKRPTQAAWRVVFITSAVVYMVCCTIYLVFGNGTRQPWDNP 590

Query: 123 NNDAPTPRAATKRDASNNNRTSYASDVEDTVQ 154
           +ND             N  +   A D+EDTVQ
Sbjct: 591 SND-----QMNLEHKKNKKKNKMAMDIEDTVQ 617

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709269|ref|XP_003243916.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 2 [Acyrthosiphon pisum] gi|328709273|ref|XP_003243917.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 3 [Acyrthosiphon pisum]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 118/152 (77%), Gaps = 5/152 (3%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQ+GPA+ L+AASYTGCDPYLTV ILT+G+G NGA+YSGFKVNHLDISPRFAGILMS T
Sbjct: 486 IGQFGPAIALIAASYTGCDPYLTVAILTVGVGLNGAIYSGFKVNHLDISPRFAGILMSLT 545

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NCLANLAGLLAPI+AGYVI  +PTQAAWRVVF+ +AVVY+   T Y+   +G RQPWDNP
Sbjct: 546 NCLANLAGLLAPIVAGYVIDKRPTQAAWRVVFITSAVVYMVCCTIYLVFGNGTRQPWDNP 605

Query: 123 NNDAPTPRAATKRDASNNNRTSYASDVEDTVQ 154
           +ND             N  +   A D+EDTVQ
Sbjct: 606 SND-----QMNLEHKKNKKKNKMAMDIEDTVQ 632

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193709300|ref|XP_001950194.1| PREDICTED: putative inorganic phosphate cotransporter [Acyrthosiphon pisum]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 117/152 (76%), Gaps = 7/152 (4%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQ+GPA+ L+AASYTGCDPYLTV ILT+G+G NG +YSGFKVNHLDISPRFAGILMS T
Sbjct: 409 VGQFGPAIALIAASYTGCDPYLTVAILTVGVGLNGGIYSGFKVNHLDISPRFAGILMSLT 468

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NCLANLAGLLAPI+AGYVI  +PTQAAWRVVF+ +AVVY+   T Y+   SG RQPWDNP
Sbjct: 469 NCLANLAGLLAPIVAGYVIDKRPTQAAWRVVFITSAVVYMVCCTVYLVFGSGTRQPWDNP 528

Query: 123 NNDAPTPRAATKRDASNNNRTSYASDVEDTVQ 154
           +ND          D   N + +   D EDTVQ
Sbjct: 529 SND------QINLDHKKNKKNN-NMDTEDTVQ 553

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489012|ref|XP_001602874.2| PREDICTED: putative inorganic phosphate cotransporter [Nasonia vitripennis]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 115/152 (75%), Gaps = 6/152 (3%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQ+GPAV LVAASYTGC P+LTV +LTIG+G NG +YSGFKVNHLDISPRFAG+LMSFT
Sbjct: 382 IGQFGPAVALVAASYTGCSPWLTVSLLTIGVGLNGGIYSGFKVNHLDISPRFAGVLMSFT 441

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NCLANLAGLLAPI AGY+I G PTQA WR+VFV +A +Y+  +TFYI   SG RQ WDNP
Sbjct: 442 NCLANLAGLLAPITAGYIIVGTPTQAKWRIVFVLSAAIYVLCATFYIIFGSGQRQSWDNP 501

Query: 123 NNDAPTPRAATKRDASNNNRTSYASDVEDTVQ 154
           + D+        ++ S+N +     + +  +Q
Sbjct: 502 DRDSEL------KEKSDNKKKQQKLNHQHQLQ 527

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114768|ref|XP_001652412.1| inorganic phosphate cotransporter, putative [Aedes aegypti] gi|108883565|gb|EAT47790.1| AAEL001113-PA [Aedes aegypti]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/144 (62%), Positives = 114/144 (79%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQYGPA+ L+ ASYTGC+  LTV ILT+G+GFNG +Y+GFK+NHLD++PR+AGILM+FT
Sbjct: 361 IGQYGPAIALIIASYTGCNRALTVAILTVGVGFNGGIYAGFKINHLDLTPRYAGILMAFT 420

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NC ANLAGLLAPI AG +I+GKPT A WR+VFV AA VY+F++TFY   ASG RQPWDNP
Sbjct: 421 NCSANLAGLLAPIAAGNIIEGKPTIAQWRIVFVIAACVYIFTATFYNIFASGTRQPWDNP 480

Query: 123 NNDAPTPRAATKRDASNNNRTSYA 146
           +ND P    + +  A  N  ++ A
Sbjct: 481 DNDEPQKPVSIEAPAYENGHSNIA 504

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038579|ref|XP_001847126.1| inorganic phosphate cotransporter [Culex quinquefasciatus] gi|167882325|gb|EDS45708.1| inorganic phosphate cotransporter [Culex quinquefasciatus]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 109/132 (82%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQYGPA+ L+ ASYTGC+  LTV ILTIG+G NG +Y+GFK+NHLD++PR+AGILM+FT
Sbjct: 360 IGQYGPAIALIIASYTGCNRALTVAILTIGVGLNGGIYAGFKINHLDLTPRYAGILMAFT 419

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NC ANLAGLLAPI AG +I+GKPT A WR+VF+ AA VYLF++TFY   ASG RQPWDNP
Sbjct: 420 NCSANLAGLLAPIAAGNIIEGKPTIAQWRIVFLIAAGVYLFTATFYNLFASGSRQPWDNP 479

Query: 123 NNDAPTPRAATK 134
           +ND P   A+ +
Sbjct: 480 DNDEPQKPASIE 491

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48097362|ref|XP_393759.1| PREDICTED: putative inorganic phosphate cotransporter [Apis mellifera]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/134 (67%), Positives = 107/134 (79%), Gaps = 1/134 (0%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQ+GPA+ L AASYTGC+ +LTV ILTIG+G NG +YSGFKVNHLDISPRFAGILMSFT
Sbjct: 373 IGQFGPAIALAAASYTGCNSWLTVTILTIGVGLNGGIYSGFKVNHLDISPRFAGILMSFT 432

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NCLANLAGLLAPI AGY+I G PT A WR+VF+ +A VY+  +TFY+   SG RQPWDNP
Sbjct: 433 NCLANLAGLLAPITAGYIIVGPPTHAKWRLVFMISAGVYIACATFYVIFGSGQRQPWDNP 492

Query: 123 NNDAPTPRAATKRD 136
           + D    +   K+D
Sbjct: 493 DKDEER-QQHEKQD 505

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378402|gb|EFR24986.1| hypothetical protein AND_10069 [Anopheles darlingi]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 104/125 (83%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQYGPA+ L+ ASYTGC   LTV ILTIG+G NG +Y+GFK+NHLD++PR+AG+LM+FT
Sbjct: 406 IGQYGPAIALIVASYTGCSRALTVAILTIGVGLNGGIYAGFKINHLDLTPRYAGVLMAFT 465

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NC ANLAGLLAPI AG +I+GKPT A WR+VFV AA VY+F++TFY   ASG RQPWDNP
Sbjct: 466 NCSANLAGLLAPIAAGNIIEGKPTIAQWRIVFVIAACVYIFTATFYNIFASGQRQPWDNP 525

Query: 123 NNDAP 127
            ND P
Sbjct: 526 ENDEP 530

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212339|gb|EFN88143.1| Putative inorganic phosphate cotransporter [Harpegnathos saltator]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 104/143 (72%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQY PAV L AASYTGC  +LTV +LTIG+G NG +YSGFKVNHLDISPRFAG+LMSFT
Sbjct: 332 IGQYSPAVALAAASYTGCSRWLTVALLTIGVGLNGGIYSGFKVNHLDISPRFAGVLMSFT 391

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NCLANLAGLLAPI AGY+I G PTQA WR VF+  A VY+  +TFY+  +SG RQ WDNP
Sbjct: 392 NCLANLAGLLAPITAGYIITGTPTQAKWRTVFMICAGVYVVCATFYVVFSSGQRQKWDNP 451

Query: 123 NNDAPTPRAATKRDASNNNRTSY 145
           + D            +  N T +
Sbjct: 452 DKDDEKNERREMESVTVVNETQH 474

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792381|ref|XP_320291.3| AGAP012251-PA [Anopheles gambiae str. PEST] gi|116116873|gb|EAA00281.4| AGAP012251-PA [Anopheles gambiae str. PEST]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 112/145 (77%), Gaps = 3/145 (2%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +GQYGPA+ L+ ASYTGC   LTV ILT+G+G NG +Y+GFK+NHLDI+PR+AG+LM+FT
Sbjct: 375 IGQYGPAIALIIASYTGCSRALTVAILTVGVGLNGGIYAGFKINHLDITPRYAGVLMAFT 434

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
           NC ANLAGLLAPI AG +I+GKPT A WR+VFV AA VYLF++TFY   ASG RQ WD+P
Sbjct: 435 NCSANLAGLLAPIAAGNIIEGKPTIAQWRIVFVIAACVYLFTATFYNVFASGARQFWDDP 494

Query: 123 NNDAPTP---RAATKRDASNNNRTS 144
            ND P      A +  +A+ NN T+
Sbjct: 495 ENDEPQKPSIEAPSHSEANGNNGTT 519

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
FB|FBgn0024315	529	Picot "Picot" [Drosophila mela	0.850	0.247	0.563	2.7e-36
UNIPROTKB|O61369	483	Picot "Putative inorganic phos	0.935	0.298	0.530	7.2e-36
FB|FBgn0029727	479	CG6978 [Drosophila melanogaste	0.753	0.242	0.487	5.3e-27
FB|FBgn0031307	512	MFS3 "Major Facilitator Superf	0.798	0.240	0.358	5.1e-18
FB|FBgn0034394	491	CG15096 [Drosophila melanogast	0.779	0.244	0.363	7.6e-18
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.759	0.239	0.389	1.2e-17
FB|FBgn0034392	497	MFS15 "Major Facilitator Super	0.909	0.281	0.312	7.5e-17
RGD|1311388	495	Slc17a5 "solute carrier family	0.759	0.236	0.389	1.2e-16
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.759	0.236	0.381	1.6e-16
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.759	0.241	0.372	1.9e-16

FB|FBgn0024315 Picot "Picot" [Drosophila melanogaster (taxid:7227)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 75/133 (56%), Positives = 88/133 (66%)

Query:     3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
             +GQYGP V L+AASYTGCD  LT+ ILTIG+G NG +YSGFK+NHLD++PRFAG LMS T
Sbjct:   375 IGQYGPGVALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSIT 434

Query:    63 NCLANLAGLLAPIIAGYVIQ--GKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPWD 120
             NC ANLAGLLAPI AG++I    KP               Y+   TFY    SG+RQ WD
Sbjct:   435 NCSANLAGLLAPIAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWD 494

Query:   121 NPNNDAPTPRAAT 133
             NP +D   P   T
Sbjct:   495 NPEDDEQKPALQT 507

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=IEA

GO:0035435 "phosphate ion transmembrane transport" evidence=IEA

UNIPROTKB|O61369 Picot "Putative inorganic phosphate cotransporter" [Drosophila ananassae (taxid:7217)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/147 (53%), Positives = 92/147 (62%)

Query:     3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
             +GQYGP + L+AASYTGCD  LT+ ILTIG+G NG +YSGFK+NHLD++PRFAG LMS T
Sbjct:   329 IGQYGPGLALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSIT 388

Query:    63 NCLANLAGLLAPIIAGYVIQ--GKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPWD 120
             NC ANLAGLLAPI AG +I    KP               Y+   TFY    SG+RQ WD
Sbjct:   389 NCSANLAGLLAPIAAGNLISDPSKPVMGQWQIVFFIAAFVYIICGTFYNIFGSGERQFWD 448

Query:   121 NPNNDAPTPRAATKRDASNNNRTSYAS 147
             NP+ D   P A      +N  R S  S
Sbjct:   449 NPSEDEQKP-ALESSSTTNPPRLSNGS 474

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

FB|FBgn0029727 CG6978 [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 5.3e-27, P = 5.3e-27
 Identities = 57/117 (48%), Positives = 80/117 (68%)

Query:     3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
             LGQYGPAV L++  +     +LT  I  +G+G NGA+Y GFK+NHLD+SPRFAG+L+S T
Sbjct:   364 LGQYGPAVALISVGFVHHSLWLTSVIFILGMGLNGAIYCGFKINHLDLSPRFAGLLISVT 423

Query:    63 NCLANLAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPW 119
             NC+ANL GL+AP++AG+VI  KP+              ++F+++FY   ASG +Q W
Sbjct:   424 NCVANLVGLMAPMVAGHVIDPKPSVENWRIVFYIAAGVFIFTASFYNVFASG-KQQW 479

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0031307 MFS3 "Major Facilitator Superfamily Transporter 3" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 47/131 (35%), Positives = 70/131 (53%)

Query:     8 PAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLAN 67
             P VCL+   Y GC  Y  V ++++G+   G+++SGF  NH+DI+P FAG L++ TN  A 
Sbjct:   376 PGVCLLVLCYIGCRHYEAVSVMSVGIVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAAT 435

Query:    68 LAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTF--YIFAASGDRQPWDNPNND 125
             L G++ P+  G+V +G   Q              LF+  F  ++F  SG  QPW    N 
Sbjct:   436 LPGIVVPLFVGFVTKGN--QNIGAWRIIFGVTIVLFALEFLVFVFLGSGSEQPW----NK 489

Query:   126 APTPRAATKRD 136
             A TP+    +D
Sbjct:   490 AGTPKDPEAKD 500

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0034394 CG15096 [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 44/121 (36%), Positives = 64/121 (52%)

Query:     3 LGQYGPAVCLVAASYTGCDPY-LTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
             +G + P V LV   Y   D   L V +L   +G NGA Y GF  NH+D+SP FAGILM  
Sbjct:   355 IGLWIPMVTLVGLGYVNPDQSELAVVLLCFTVGMNGATYLGFNTNHIDLSPNFAGILMGI 414

Query:    62 TNCLANLAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPWDN 121
             TN +AN+  ++AP+I G+++  +                YL  +T Y+     + QPW++
Sbjct:   415 TNGVANIMSIIAPLIVGFIVTNEHDPEQWRIVFFIAAGFYLVGNTLYVIFGKANVQPWND 474

Query:   122 P 122
             P
Sbjct:   475 P 475

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 46/118 (38%), Positives = 62/118 (52%)

Query:     2 ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
             ++G  GPAV LVAA YTGC+  L V  LTI     G   SGF +NHLDI+P +AGIL+  
Sbjct:   365 VVGMAGPAVFLVAAGYTGCNYILAVAFLTISSSLGGISASGFNINHLDIAPSYAGILLGI 424

Query:    62 TNCLANLAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPW 119
             TN  A + G++ P+IA  + +   T               +F + F+     G  QPW
Sbjct:   425 TNSFATIPGMVGPVIARSLTKSN-TIPEWQIVFYISAAINIFGAVFFTIFGKGTVQPW 481

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0034392 MFS15 "Major Facilitator Superfamily Transporter 15" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 45/144 (31%), Positives = 68/144 (47%)

Query:     3 LGQYGPAVCLVAASYT--G-CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILM 59
             LG + P + L+   Y   G  +  L +G+LT  +  N A Y GF VNH+D+SP +AG LM
Sbjct:   348 LGMWLPMLALIGLGYITEGEANVRLAIGLLTAAVATNSATYLGFHVNHIDLSPNYAGTLM 407

Query:    60 SFTNCLANLAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPW 119
               TNC AN   +LAP+I G ++  +                Y   +  ++       QPW
Sbjct:   408 GITNCAANFMSILAPLIVGLIVWDETNPAQWRIVFFFTAFVYFIGNLLFMLFGRTRVQPW 467

Query:   120 DN-PNNDAPTPRAATKRDASNNNR 142
             ++ P    P+P    +RD    +R
Sbjct:   468 NSRPTTRTPSPGGGGERDEGTEDR 491

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 46/118 (38%), Positives = 61/118 (51%)

Query:     2 ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
             ++G  GPAV LVAA + GCD  L V  LTI     G   SGF +NHLDI+P +AGIL+  
Sbjct:   369 LIGMVGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFASSGFSINHLDIAPSYAGILLGI 428

Query:    62 TNCLANLAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPW 119
             TN  A + G++ PIIA  +     T               +F + F+   A G+ Q W
Sbjct:   429 TNTFATIPGMIGPIIAKSLTPDN-TIKEWQTVFCIAAAINVFGAIFFTLFAKGEVQNW 485

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:     2 ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
             ++G  GPAV LVAA + GCD  L V  LTI     G   SGF +NHLDI+P +AGIL+  
Sbjct:   369 LIGMIGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGI 428

Query:    62 TNCLANLAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPW 119
             TN  A + G++ P+IA  +     T               +F + F+   A G+ Q W
Sbjct:   429 TNTFATIPGMVGPVIAKSLTPDN-TVGEWQTVFYIAAAINVFGAIFFTLFAKGEVQNW 485

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 44/118 (37%), Positives = 62/118 (52%)

Query:     2 ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
             ++G  GPAV LVAA + GC+  L V  +TI     G   SG+ +NHLDI+P +AGIL+  
Sbjct:   358 LIGMIGPAVFLVAAGFIGCNYELAVAFVTISTTLGGFCTSGYSINHLDIAPSYAGILLGI 417

Query:    62 TNCLANLAGLLAPIIAGYVIQGKPTQXXXXXXXXXXXXXYLFSSTFYIFAASGDRQPW 119
             TN  A + G++ P+IA  +     T               LF + F+   ASG+ Q W
Sbjct:   418 TNSFATIPGMVGPVIAKNLTHNN-TVGEWQTVFYIAASINLFGAIFFALFASGEVQDW 474

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V7S5	PICO_DROME	No assigned EC number	0.6090	0.8506	0.2476	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-29
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	0.002

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  110 bits (278), Expect = 2e-29
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 3   LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFT 62
           +G  GP +   A  Y     YLT+ ILT+    +    +G  +N LD++PRF G +   T
Sbjct: 342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGIT 401

Query: 63  NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNP 122
                + GL+A  +AG  I  + ++  W +VF+  A V +    FY+   S +RQ W   
Sbjct: 402 GLPGFIGGLIASTLAG-NILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAKE 460

Query: 123 NND 125
             D
Sbjct: 461 EKD 463

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 1   MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMS 60
           +++G    A+ L+  +       L V +L +G G   A  +   +      P   G    
Sbjct: 245 LLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASG 304

Query: 61  FTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF 110
             N   +L G L P++AG ++        +  VF+  A + L ++   + 
Sbjct: 305 LFNTFGSLGGALGPLLAGLLLDTG----GYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 2   ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSF 61
           I+     ++ + A +Y    PY  + ++ +G    GA   G+ +   +     AG+    
Sbjct: 293 IIAGLVLSLLMFATNYVN-IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGL 351

Query: 62  TNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100
            N L NL G++ PI+ G +     +  A  ++ VAA  +
Sbjct: 352 INSLGNLGGIVGPIVIGAIAATTGS-FAGALMVVAALAL 389

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
KOG2532|consensus	466		99.66
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.38
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.3
TIGR00893	399	2A0114 d-galactonate transporter.	98.96
PRK11663	434	regulatory protein UhpC; Provisional	98.93
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.82
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.8
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.79
PLN00028	476	nitrate transmembrane transporter; Provisional	98.73
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.72
TIGR00895	398	2A0115 benzoate transport.	98.71
TIGR00900	365	2A0121 H+ Antiporter protein.	98.7
PRK10054	395	putative transporter; Provisional	98.7
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.7
PRK10489	417	enterobactin exporter EntS; Provisional	98.7
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.69
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.68
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.67
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.67
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.66
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.65
PRK05122	399	major facilitator superfamily transporter; Provisi	98.64
PRK03545	390	putative arabinose transporter; Provisional	98.62
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.6
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.6
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.58
PRK12382	392	putative transporter; Provisional	98.57
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.55
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.55
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.54
KOG2532|consensus	466		98.54
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.54
PRK03699	394	putative transporter; Provisional	98.53
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.51
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.51
PRK09874	408	drug efflux system protein MdtG; Provisional	98.5
TIGR00891	405	2A0112 putative sialic acid transporter.	98.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.48
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.48
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.47
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.47
PRK10091	382	MFS transport protein AraJ; Provisional	98.47
KOG2504|consensus	509		98.47
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.46
PRK10504	471	putative transporter; Provisional	98.45
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.44
PRK11010	491	ampG muropeptide transporter; Validated	98.44
PRK10642	490	proline/glycine betaine transporter; Provisional	98.43
TIGR00901	356	2A0125 AmpG-related permease.	98.43
PRK03893	496	putative sialic acid transporter; Provisional	98.43
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.42
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.41
PRK15011	393	sugar efflux transporter B; Provisional	98.41
PRK09874	408	drug efflux system protein MdtG; Provisional	98.41
PRK09705	393	cynX putative cyanate transporter; Provisional	98.41
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.38
PRK11663	434	regulatory protein UhpC; Provisional	98.37
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.37
KOG4686|consensus	459		98.36
TIGR00893	399	2A0114 d-galactonate transporter.	98.36
TIGR00898	505	2A0119 cation transport protein.	98.36
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.35
PRK09528	420	lacY galactoside permease; Reviewed	98.35
KOG1330|consensus	493		98.34
PRK11043	401	putative transporter; Provisional	98.33
PRK12307	426	putative sialic acid transporter; Provisional	98.33
PRK11902	402	ampG muropeptide transporter; Reviewed	98.31
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.31
PRK15011	393	sugar efflux transporter B; Provisional	98.3
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.29
PTZ00207	591	hypothetical protein; Provisional	98.29
PRK09952	438	shikimate transporter; Provisional	98.29
PRK10054	395	putative transporter; Provisional	98.29
PRK03545	390	putative arabinose transporter; Provisional	98.28
PRK11010	491	ampG muropeptide transporter; Validated	98.28
PRK03893	496	putative sialic acid transporter; Provisional	98.28
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.27
TIGR00898	505	2A0119 cation transport protein.	98.26
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.25
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.25
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.25
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.24
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.24
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.24
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.23
PRK10489	417	enterobactin exporter EntS; Provisional	98.23
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.23
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.2
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.19
KOG2533|consensus	495		98.19
KOG3764|consensus	464		98.19
PLN00028	476	nitrate transmembrane transporter; Provisional	98.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.18
PRK09705	393	cynX putative cyanate transporter; Provisional	98.17
PRK10642	490	proline/glycine betaine transporter; Provisional	98.16
PRK03699	394	putative transporter; Provisional	98.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.14
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.1
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.07
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.07
KOG0255|consensus	521		98.06
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.05
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.04
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.03
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.02
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.96
TIGR00805	633	oat sodium-independent organic anion transporter.	97.94
PRK09952	438	shikimate transporter; Provisional	97.94
PRK10091	382	MFS transport protein AraJ; Provisional	97.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.89
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.89
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.88
PRK03633	381	putative MFS family transporter protein; Provision	97.88
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.88
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.87
PRK15075	434	citrate-proton symporter; Provisional	97.86
KOG2504|consensus	509		97.85
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.85
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.82
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.82
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.8
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.78
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.78
PRK12307	426	putative sialic acid transporter; Provisional	97.76
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.75
PF13347	428	MFS_2: MFS/sugar transport protein	97.73
PRK03633	381	putative MFS family transporter protein; Provision	97.73
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.73
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.71
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.71
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.66
TIGR00891	405	2A0112 putative sialic acid transporter.	97.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.6
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.59
PRK10504	471	putative transporter; Provisional	97.59
KOG2615|consensus	451		97.59
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.57
PRK11902	402	ampG muropeptide transporter; Reviewed	97.57
PRK11043	401	putative transporter; Provisional	97.57
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.56
KOG0253|consensus	528		97.55
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.55
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.54
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.54
PRK12382	392	putative transporter; Provisional	97.53
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.52
PRK10133	438	L-fucose transporter; Provisional	97.52
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.51
TIGR00900	365	2A0121 H+ Antiporter protein.	97.51
PRK09669	444	putative symporter YagG; Provisional	97.51
PRK05122	399	major facilitator superfamily transporter; Provisi	97.5
PRK09528	420	lacY galactoside permease; Reviewed	97.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.48
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.48
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.45
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.43
TIGR00895	398	2A0115 benzoate transport.	97.42
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.4
PRK11462	460	putative transporter; Provisional	97.38
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.38
KOG0252|consensus	538		97.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.33
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.28
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.25
PRK09848	448	glucuronide transporter; Provisional	97.2
PRK15075	434	citrate-proton symporter; Provisional	97.16
PRK10429	473	melibiose:sodium symporter; Provisional	97.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.11
KOG3762|consensus	618		97.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.09
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.09
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.02
PRK10429	473	melibiose:sodium symporter; Provisional	97.0
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.99
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.98
KOG0254|consensus	513		96.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.92
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.85
PRK10133	438	L-fucose transporter; Provisional	96.81
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.8
KOG0569|consensus	485		96.77
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.74
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.68
COG2211	467	MelB Na+/melibiose symporter and related transport	96.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.6
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.55
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.54
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.46
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.44
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.43
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.39
KOG0255|consensus	521		96.37
KOG2816|consensus	463		96.36
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.36
KOG1330|consensus	493		96.21
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.21
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.12
PRK09669	444	putative symporter YagG; Provisional	96.08
PRK10473	392	multidrug efflux system protein MdtL; Provisional	96.05
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.02
COG2211	467	MelB Na+/melibiose symporter and related transport	95.98
PTZ00207	591	hypothetical protein; Provisional	95.96
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.92
KOG2325|consensus	488		95.91
PF13347	428	MFS_2: MFS/sugar transport protein	95.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	95.86
KOG2615|consensus	451		95.82
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.79
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.63
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.46
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.12
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	94.87
KOG3626|consensus	735		94.77
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.65
PRK11462	460	putative transporter; Provisional	94.64
KOG1479|consensus	406		94.04
KOG3764|consensus	464		93.71
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.44
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	93.37
PRK15462	493	dipeptide/tripeptide permease D; Provisional	93.29
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	92.71
PRK03612	521	spermidine synthase; Provisional	92.42
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.37
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	92.24
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	91.87
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	91.8
KOG3626|consensus	735		91.76
KOG4112|consensus	101		91.43
KOG0569|consensus	485		91.09
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.04
COG0477	338	ProP Permeases of the major facilitator superfamil	90.38
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.36
PRK09848	448	glucuronide transporter; Provisional	90.28
TIGR00901	356	2A0125 AmpG-related permease.	90.18
KOG2816|consensus	463		89.36
PF06645	76	SPC12: Microsomal signal peptidase 12 kDa subunit	89.17
KOG2533|consensus	495		88.34
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	88.23
KOG0254|consensus	513		87.75
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	86.08
KOG0252|consensus	538		84.69
COG3202	509	ATP/ADP translocase [Energy production and convers	82.68
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	81.62

>KOG2532|consensus

Probab=99.66  E-value=1.4e-16  Score=132.96  Aligned_cols=124  Identities=35%  Similarity=0.688  Sum_probs=113.9

Q ss_pred             CcccchhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469           1 MILGQYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         1 ~~ig~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~   79 (154)
                      |++++.+.+++++.+++.++ +.+.++++++++.++.|+..++++.+.+|.+|++.+.+.|+.+++++++++++|.++|.
T Consensus       336 n~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             HhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            57889999999999999986 34578999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCC
Q psy3469          80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNND  125 (154)
Q Consensus        80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~  125 (154)
                      ++. +++..+|+.+|++.+++.+++.++|.++++.++|+|++++++
T Consensus       416 ~~~-~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~~~~~  460 (466)
T KOG2532|consen  416 IVT-DNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTKSEEK  460 (466)
T ss_pred             EeC-CCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCccCCccc
Confidence            996 335688999999999999999999999999999999997664

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.38  E-value=4.5e-13  Score=109.49  Aligned_cols=127  Identities=16%  Similarity=0.224  Sum_probs=109.5

Q ss_pred             cccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhh--h
Q psy3469           2 ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIA--G   78 (154)
Q Consensus         2 ~ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~--G   78 (154)
                      .+|++.++++.+++.+.+ +.+...++..+-..++|+..|+...+++...| ++||+..|++|+++++|+.+.|+++  |
T Consensus        98 ~~gLilsai~nil~Gfs~-s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la  176 (448)
T COG2271          98 AFGLILSAIVNILFGFSP-SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA  176 (448)
T ss_pred             hHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence            568899999999999876 66666667777777888888888888889766 7799999999999999999999999  8


Q ss_pred             hcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCC-CCchhhh
Q psy3469          79 YVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDA-PTPRAAT  133 (154)
Q Consensus        79 ~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~-~~~~~~~  133 (154)
                      ++..+    .+|+..|++.+++.++-.++.++..+++||+..-|+.|| +.+..+.
T Consensus       177 ~~~~~----~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~  228 (448)
T COG2271         177 FFAFH----GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEI  228 (448)
T ss_pred             HHHhc----cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhh
Confidence            88874    689999999999999999999999999999999998876 4455444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.30  E-value=2.4e-11  Score=100.50  Aligned_cols=105  Identities=30%  Similarity=0.609  Sum_probs=85.4

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +.+..+.++.+..++.+...+..+....|..|+++|.+.|+.++.+.++++++|.+.|++.+.+ ..++|+.+|.+.+++
T Consensus       360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~-~~~~~~~~f~~~~~~  438 (465)
T TIGR00894       360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQD-SKNVWLIVFLIMAFV  438 (465)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC-CchHHHHHHHHHHHH
Confidence            3444455555555555555566777778899999999999999999999999999999998742 125699999999999


Q ss_pred             HHHHHHHHHHhccCCccCCCCCCCCC
Q psy3469         101 YLFSSTFYIFAASGDRQPWDNPNNDA  126 (154)
Q Consensus       101 ~~i~~~~~~~~~~~~~q~w~~~~~~~  126 (154)
                      .+++.+++.++.+.++|+|+++++||
T Consensus       439 ~~i~~i~~~~~~~~~~~~w~~~~~~~  464 (465)
T TIGR00894       439 NILCVIFYLIFGSAERQDWAKEEKDT  464 (465)
T ss_pred             HHHHHHHeeeeecceecCCCCCcccC
Confidence            99999999999999999999876653

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.96  E-value=7.7e-09  Score=81.76  Aligned_cols=107  Identities=11%  Similarity=0.124  Sum_probs=77.8

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.++.+++..+..+.+ +.+..++...+...+.+...+.....+.|..| ++|+.+.|+.+....+|..++|.+.+++.+
T Consensus        65 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  143 (399)
T TIGR00893        65 FIVIWGVFTGLQAFAG-AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI  143 (399)
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            3444455555555554 55544444444444455556677788999887 679999999999999999999999999887


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      .    .+|++.|++.+.+.++..+...++.+++
T Consensus       144 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893       144 H----FSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             h----CCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            4    6799999998888777766665555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.93  E-value=1.5e-08  Score=83.53  Aligned_cols=108  Identities=13%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +++..+++.++.++.+ +.+..+....+...+.+...+...+.+.|..| ++||++.|+.+....+|..++|.+.|++.+
T Consensus        94 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663         94 GLIATGIINILFGFSS-SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555566665554 44433333333333445555666778888877 679999999999999999999999999987


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      .    .+|++.|++.+++.++..+...++.++++
T Consensus       173 ~----~gw~~~f~~~~i~~~~~~~~~~~~~~~~p  202 (434)
T PRK11663        173 H----YGWRYGMMIAGIIAIVVGLFLCWRLRDKP  202 (434)
T ss_pred             c----ccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            4    78999999988776666554444445444

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.90  E-value=1.2e-09  Score=90.81  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=56.9

Q ss_pred             HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469          35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST  106 (154)
Q Consensus        35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~  106 (154)
                      ..+...+..++.++|..| +++|++.|+++...++|++++|.+.|.+.+.   ..+|+..|++.+++.+++.+
T Consensus       346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~---~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA---TKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh---cCCcchHHHHhhHHHHHHHH
Confidence            344545667778888766 6799999999999999999999999999984   34699999999888777665

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.82  E-value=5.1e-08  Score=76.53  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=76.8

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+++.+
T Consensus        68 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  146 (352)
T PF07690_consen   68 GLLLFALGSLLLAFAS-NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS  146 (352)
T ss_dssp             HHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhHHHHhhhhh-hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence            3444455533333433 55544444444455556667788889999887 589999999999999999999999999997


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .    .+|++.|++.+.+.++..++..++.
T Consensus       147 ~----~~~~~~~~~~~~~~~~~~il~~~~~  172 (352)
T PF07690_consen  147 Y----FGWRWAFLISAILSLIAAILFILFL  172 (352)
T ss_dssp             H----CHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             c----cccccccccccchhhhhhhhHhhhh
Confidence            3    7799999999999999887544444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.80  E-value=1.3e-07  Score=64.40  Aligned_cols=101  Identities=16%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             hHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469           7 GPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP   85 (154)
Q Consensus         7 ~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~   85 (154)
                      ..+++.+...+.+ +.+.......+.....+...+..+....|..| ++|+.+.|+.+....++..++|.+.|++.+.  
T Consensus        37 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--  113 (141)
T TIGR00880        37 IFVLSTAMFALSS-NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF--  113 (141)
T ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc--
Confidence            3344444444443 54444444444444455556677788889877 6799999999999999999999999999874  


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          86 TQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        86 ~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                        .+|++.|++.+.+.+++.+...++.
T Consensus       114 --~~~~~~~~~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       114 --LGWRAPFLFLAILALAAFILLAFLL  138 (141)
T ss_pred             --cchHHHHHHHHHHHHHHHHHHhhcC
Confidence              6799999998888877776665554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.79  E-value=1.1e-08  Score=80.78  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=77.8

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhh-hhhhcc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPI-IAGYVI   81 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~-i~G~i~   81 (154)
                      +.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|. +.+.+.
T Consensus        66 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  144 (379)
T TIGR00881        66 GLILCAIVNLFFGFST-SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA  144 (379)
T ss_pred             HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence            4445555556666554 55444444444444455556677788899877 67999999999999999999995 555555


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCC
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPW  119 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w  119 (154)
                      +    ..+|+..|++.+.+.++..+...++.++++++.
T Consensus       145 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (379)
T TIGR00881       145 E----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC  178 (379)
T ss_pred             h----cCCchhHHHHHHHHHHHHHHHHheeeCCCcccc
Confidence            5    268999999988888777666666666555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.73  E-value=6e-08  Score=81.12  Aligned_cols=91  Identities=11%  Similarity=-0.012  Sum_probs=64.5

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +....+..+.+..++.+...+..++...++.|+++|++.|+.+..+++|++++|.+.+  .+   .+.+|+..|++.+++
T Consensus       347 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~---~~~~y~~~f~~~~~~  421 (476)
T PLN00028        347 SLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TG---SSYSTETGISLMGVM  421 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hc---CCccHhhHHHHHHHH
Confidence            3333333333333334444566777888888999999999999988888888888765  11   136799999999999


Q ss_pred             HHHHHHHHHHhccCCc
Q psy3469         101 YLFSSTFYIFAASGDR  116 (154)
Q Consensus       101 ~~i~~~~~~~~~~~~~  116 (154)
                      .+++.++.++....++
T Consensus       422 ~~i~~~~~~~~~~~~~  437 (476)
T PLN00028        422 IIACTLPVAFIHFPQW  437 (476)
T ss_pred             HHHHHHHHHheeccch
Confidence            9999888777654443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.72  E-value=1.9e-07  Score=74.69  Aligned_cols=106  Identities=21%  Similarity=0.245  Sum_probs=75.2

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.++.+++.+.+.+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+
T Consensus        62 ~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  140 (377)
T PRK11102         62 GTLVFALAAVACALAQ-TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV  140 (377)
T ss_pred             HHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555554 54443333333333444445566778889877 679999999999999999999999999988


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                      .    .+|++.|++.+.+.++..+...++.++
T Consensus       141 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102        141 W----FSWHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             H----cChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            4    689999999888887776666555544

>TIGR00895 2A0115 benzoate transport

Probab=98.71  E-value=2.9e-08  Score=79.12  Aligned_cols=107  Identities=13%  Similarity=0.170  Sum_probs=74.7

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.++.+++.+++.+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus        88 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  166 (398)
T TIGR00895        88 SILLFSVFTLLCALAT-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP  166 (398)
T ss_pred             HHHHHHHHHHHHHHcc-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence            3344445555555544 54443333344444445556677888999887 679999999999999999999999999988


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      .    .+|+..|++.+.+.++..+...++.++.
T Consensus       167 ~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       167 V----FGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             c----ccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            4    6799999988766666655555554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.70  E-value=1.7e-07  Score=73.76  Aligned_cols=87  Identities=13%  Similarity=0.087  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      .+..+....+...+.+...+...+.+.|..| ++|+.+.|+.+....+|.+++|.+.+++.+.    .+|++.|++.+..
T Consensus        92 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~g~~~~~~~~~~~  167 (365)
T TIGR00900        92 IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT----LGIKWAIWVDAVG  167 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHH
Confidence            3333334444444455556677889999887 6799999999999999999999999999874    7899999988777


Q ss_pred             HHHHHHHHHHhc
Q psy3469         101 YLFSSTFYIFAA  112 (154)
Q Consensus       101 ~~i~~~~~~~~~  112 (154)
                      .+++.+...++.
T Consensus       168 ~~~~~~~~~~~~  179 (365)
T TIGR00900       168 FAISALLIVSVR  179 (365)
T ss_pred             HHHHHHHHHhcc
Confidence            766655544443

>PRK10054 putative transporter; Provisional

Probab=98.70  E-value=1.3e-07  Score=77.11  Aligned_cols=103  Identities=14%  Similarity=0.082  Sum_probs=69.8

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..++..+.+.+.+ +.+..+++..+.....+...+...+...|..| ++|+++.|+.+...++|.+++|.+.|++.+
T Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         79 AITAFASGFIAIPLVN-NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555554 44433333333333333334556677788765 779999999999999999999999999875


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                           .+|+..|++.+++.+++.+...++.
T Consensus       158 -----~g~~~~f~~~~~~~~i~~i~~~~~~  182 (395)
T PRK10054        158 -----QSINLPFWLAAICSAFPLVFIQIWV  182 (395)
T ss_pred             -----hccCcHHHHHHHHHHHHHHHHHHHH
Confidence                 4699999998888887765554444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.70  E-value=1.3e-07  Score=75.52  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..++..+...+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  154 (385)
T TIGR00710        76 GLFIFALSSLGLALSN-NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV  154 (385)
T ss_pred             HHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555543 54443333334344445555667778889877 679999999999999999999999999987


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                      .    .+|+..|++.+.+.++..+...++.++
T Consensus       155 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       155 W----LSWHAIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             H----cCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4    689999999888887777666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.70  E-value=2.5e-07  Score=75.45  Aligned_cols=103  Identities=9%  Similarity=-0.074  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      .+.++.++.+.+.+ +.+...++..+...+.+...+..++.++|..| +.||++.|+++...++|..++|.+.|++.+. 
T Consensus       297 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-  374 (417)
T PRK10489        297 LGSFLAVGLFGLMP-MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-  374 (417)
T ss_pred             HHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-
Confidence            33444444444433 43333333333333334434556678889887 5699999999999999999999999999984 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          85 PTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                         .+++..|...+.+.++..++.....+
T Consensus       375 ---~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        375 ---MTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             ---hchhhHHHHHHHHHHHHHHHHHHhcc
Confidence               56777777777666555544444443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.69  E-value=2.1e-07  Score=73.52  Aligned_cols=108  Identities=10%  Similarity=0.011  Sum_probs=72.4

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      +.++.++..+...+.+ +.+..++...+...+.+...+.......+..|++|+.+.++......+|..+++++.+.+.+.
T Consensus        74 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (377)
T TIGR00890        74 GGILYGLGFTFYAIAD-SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINL  152 (377)
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence            4445555555555554 444333333333333444344445566677788899999999999999999888787777763


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                          .+|++.|++.+++.++..+...++.++.+
T Consensus       153 ----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       153 ----EGVPAAFIYMGIIFLLVIVLGAFLIGYPP  181 (377)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence                68999999999888877766666554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.68  E-value=4.4e-07  Score=76.14  Aligned_cols=107  Identities=8%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLD-ISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d-~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +.++.+++.+.+.+.+ +.+..++.-.+...+.+...+.....+.+ +.| ++|+.+.|+......+|..++|.+.|++.
T Consensus        77 ~~~~~~~~~~~~~~a~-~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         77 GGTLFGLASLAAAFSP-TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445555555666654 55444443333333334434444445545 445 78999999999999999999999999999


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      +.    .+||+.|++...+.++..++..++.+++
T Consensus       156 ~~----~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        156 EH----FYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             cc----CChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            84    7899999998888887777666665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.67  E-value=2e-07  Score=82.23  Aligned_cols=103  Identities=14%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +++++.+++.+++.+.+ +....+++.++..++.+...+..+.+++|+.| +.||++.|+.+..+.+|++++|.+.|++.
T Consensus       630 ~~~~lsai~~ll~~~~~-s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~  708 (742)
T TIGR01299       630 GSMVLSCISCFFLSFGN-SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV  708 (742)
T ss_pred             HHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666665 44333333334344444456678889999988 67999999999999999999999999988


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      +.     +....|++++++.++++++.+++
T Consensus       709 ~~-----~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       709 GI-----TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             Hh-----hhHHHHHHHHHHHHHHHHHHHhC
Confidence            73     35678888888888877766554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.67  E-value=2.3e-07  Score=76.07  Aligned_cols=113  Identities=11%  Similarity=0.054  Sum_probs=76.1

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      ++++.++..++.++.+ +.+..++.-.+...+.+...+.....+.|..| ++||.+.|+.+....+|..++|.+.+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332        79 IMVLWGIASTATMFAT-GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445555555566654 54433333333333444444555667788877 679999999999999999999999999874


Q ss_pred             Ccc--cccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          83 GKP--TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        83 ~~~--~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      ...  ...+||+.|++.+...++..++..++.++.++
T Consensus       158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            210  12589999999888877666656556555543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.66  E-value=4.1e-07  Score=73.51  Aligned_cols=105  Identities=14%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+..++..+...+.+ +.+..+....+.....+...+..++.+.|..| ++|+.+.|+.+....++..++|.+.+.+.+.
T Consensus        75 ~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~  153 (392)
T PRK10473         75 AALFIIASLLCSLAE-TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK  153 (392)
T ss_pred             HHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334444444445443 44333333233333334444566778888776 7899999999999999999999999988763


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                          .+|+..|++.+.+.++..+...++.++
T Consensus       154 ----~g~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        154 ----FPWQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             ----cChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                689999999988887776665555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.65  E-value=5.3e-07  Score=73.53  Aligned_cols=100  Identities=16%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      ++++.++..+...+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.....++|..++|.+.+++.+
T Consensus        91 ~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~  169 (394)
T PRK10213         91 FAVLLTLSCLLVSFAN-SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE  169 (394)
T ss_pred             HHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445555555555554 55544444444444455556677778889886 679999999999999999999999999988


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFY  108 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~  108 (154)
                      .    .+|++.|++.+.+.++..+..
T Consensus       170 ~----~gw~~~f~~~~~l~~~~~l~~  191 (394)
T PRK10213        170 L----IGWRNVFNAAAVMGVLCIFWI  191 (394)
T ss_pred             h----cCHHHHHHHHHHHHHHHHHHH
Confidence            4    689999999887666554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.64  E-value=4.2e-07  Score=73.50  Aligned_cols=105  Identities=14%  Similarity=0.117  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      +..++.++++.+.+ +.+..+....+..++.+...+.......|..| +++|++.|+.+....+|..++|.+.|++.+. 
T Consensus       287 ~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-  364 (399)
T PRK05122        287 LVEILGLLLLWLAP-SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-  364 (399)
T ss_pred             HHHHHHHHHHHHhc-cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34444444544443 44333333333333334434444455667666 7799999999999999999999999999884 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          85 PTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                         .+|+..|++.+++.+++.+...++.+++
T Consensus       365 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        365 ---FGYPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             ---cCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence               6799999999988888877766655433

>PRK03545 putative arabinose transporter; Provisional

Probab=98.62  E-value=4.9e-07  Score=73.14  Aligned_cols=105  Identities=13%  Similarity=-0.047  Sum_probs=72.5

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +++..++..+...+.+ +.+..++...+.....+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~-~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         80 LFVLFIASHVLSALAW-NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3444555555556554 55443333332222233334556678888876 679999999999999999999999999887


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      .    .+|++.|++.+.+.++..+......+
T Consensus       159 ~----~gw~~~f~~~~~~~~l~~~~~~~~~~  185 (390)
T PRK03545        159 Y----LGWRTTFLAIGGGALITLLLLIKLLP  185 (390)
T ss_pred             H----hcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3    68999999998887777655444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.60  E-value=6.3e-07  Score=73.25  Aligned_cols=103  Identities=12%  Similarity=0.171  Sum_probs=72.9

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..++..+.+.+.+ +.+.......+.....+...+...+.+.|..| ++++.+.|+.+...++|..++|.+.|++.+
T Consensus        82 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~  160 (400)
T PRK11646         82 GMLMRAAGFATMAIAH-EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ  160 (400)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555554 55443333333333344445666778888776 789999999999999999999999999984


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                           .+|++.|++.+.+.++..++..++.
T Consensus       161 -----~g~~~~f~~~~~~~~~~~i~~~~~~  185 (400)
T PRK11646        161 -----YDFRLVCATGAVLFVLAAAFNAWLL  185 (400)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhC
Confidence                 5799999998888777765554444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.60  E-value=4.3e-07  Score=74.89  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=60.9

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                      .+...+.....+.|..| ++||++.|+.+....+++.++|.+.+.+.+.   ..+|+..|++.+.+.++..+...++.++
T Consensus       132 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       132 QGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW---FNDWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             hhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            44444555667778776 7799999999999999999999998876552   3689999999998888877666666655


Q ss_pred             Ccc
Q psy3469         115 DRQ  117 (154)
Q Consensus       115 ~~q  117 (154)
                      +++
T Consensus       209 ~~~  211 (438)
T TIGR00712       209 TPQ  211 (438)
T ss_pred             CHH
Confidence            544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.58  E-value=5.3e-07  Score=74.47  Aligned_cols=105  Identities=16%  Similarity=0.188  Sum_probs=75.8

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus        73 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        73 STFAFTLGSLLCGVAP-NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             HHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            3444455555555554 55444444444444445555677788899876 779999999999999999999999999988


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      .    .+|++.|++.+.+.++..++..++.+
T Consensus       152 ~----~~w~~~f~~~~~~~~~~~~~~~~~~~  178 (485)
T TIGR00711       152 N----YHWRWIFLINVPIGIIVVVVAFFILP  178 (485)
T ss_pred             C----cCceehhhhhhHHHHHHHHHHHHHcC
Confidence            4    78999999988877777665555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=98.57  E-value=7.3e-07  Score=72.03  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      ....++.++++.+.+ +.+..+....+...+.+...+...+...|..| ++||++.|+.++...+|+.++|.+.|++.+.
T Consensus       286 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~  364 (392)
T PRK12382        286 LLVETVGLLLLWLAP-TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS  364 (392)
T ss_pred             HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444 44433333333333344444555566677665 7899999999999999999999999999984


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                          .+|+..|.+.+.+.+++.+..+++.
T Consensus       365 ----~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        365 ----FGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             ----hCchHHHHHHHHHHHHHHHHHHhhc
Confidence                6899999999998888887766554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.55  E-value=3.2e-07  Score=75.92  Aligned_cols=78  Identities=15%  Similarity=0.255  Sum_probs=62.4

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                      .+...+.....+.|..| ++|+.+.|+.+....+|.+++|++.+++.+.   ..+|+..|++.+++.++..+++..+.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~---~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES---WGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            44445566678888887 7899999999999999999999999999873   1389999999988887777766666655


Q ss_pred             Cc
Q psy3469         115 DR  116 (154)
Q Consensus       115 ~~  116 (154)
                      ++
T Consensus       222 ~p  223 (465)
T TIGR00894       222 DP  223 (465)
T ss_pred             Cc
Confidence            44

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.55  E-value=9.9e-07  Score=72.44  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      .+..+..++..+.+ +.+..++.-.+.....|...+...+...++.| ++|+.+.|++...-.++..+|.+++.++-|. 
T Consensus        86 ~lFi~~n~l~alAp-~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-  163 (394)
T COG2814          86 ALFIVSNLLSALAP-SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-  163 (394)
T ss_pred             HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-
Confidence            34445566666665 66555555555555566666777778888776 7899999999999999999999999999985 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          85 PTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                         .|||..|+..+.+.++..+..+...+
T Consensus       164 ---~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         164 ---FGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               89999999999999999888877776

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.54  E-value=4.7e-07  Score=75.91  Aligned_cols=104  Identities=13%  Similarity=0.024  Sum_probs=72.2

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c---hHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R---FAGILMSFTNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~---~~g~~~g~~~~~~~lg~~i~P~i~G~   79 (154)
                      ++++.++..+++.+.+ +.+..++.+.+...+.+...+...+.+.|..| +   +|+.+.++.+...++|.+++|.+.|+
T Consensus        85 ~~~~~~~g~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSI-YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcc-cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            4455555556666554 44333333333334445555667778888765 3   38889999999999999999999999


Q ss_pred             cccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      +.+.    .+|+..|.+.+..++++.+.+.+..
T Consensus       164 l~~~----~g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       164 IAEN----YGYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHHh----cChHHHHHHHHHHHHHHHHHHHHcc
Confidence            9884    6899999998877777665554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2532|consensus

Probab=98.54  E-value=4.3e-07  Score=76.27  Aligned_cols=112  Identities=11%  Similarity=0.151  Sum_probs=84.4

Q ss_pred             cchhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           4 GQYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +.++.+++.++.+.... +.+..+++-.+-....+..++..........| ++|++..++.....++|.+++-++.|++.
T Consensus       109 ~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc  188 (466)
T KOG2532|consen  109 SGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLC  188 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            45566666666665431 22322333333333455555666667777777 88999999999999999999999999999


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP  118 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~  118 (154)
                      +.   ..||+.+|++.+++.++-.++|.++..++|++
T Consensus       189 ~s---~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  189 ES---SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             cc---CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            94   48999999999999999999999999877775

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.54  E-value=1.4e-06  Score=70.52  Aligned_cols=106  Identities=17%  Similarity=0.101  Sum_probs=73.6

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .++.+++.++..+.+ +.+..++...+.....+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  165 (406)
T PRK11551         87 VALFGLFSLATAQAW-DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD  165 (406)
T ss_pred             HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            334444455555554 55444444444444445556667788899876 7799999999999999999999998888763


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                          .+|+..|++.+++.++..+...++.+++
T Consensus       166 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~  193 (406)
T PRK11551        166 ----AAWRHIFYVGGVGPLLLVPLLMRWLPES  193 (406)
T ss_pred             ----cCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                6799999988777666655554544443

>PRK03699 putative transporter; Provisional

Probab=98.53  E-value=1.7e-06  Score=70.28  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+..++..++..+.+ +.+..+....+...+.+...+.....+.|..| ++|+.+.+..+....+++.++|.+.+++.+.
T Consensus        79 ~~~~~i~~~l~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699         79 FALMILAVAGLMFSH-SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHHHHHHHHHHHHcc-hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334444444555543 44443333344444445555566677888777 5699999999999999999999999988763


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHH
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSSTFYI  109 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~~~~~  109 (154)
                         ..+||+.|.+.+.+.++..++++
T Consensus       158 ---~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        158 ---SIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHH
Confidence               36899999988877766655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.51  E-value=6.1e-07  Score=74.58  Aligned_cols=68  Identities=9%  Similarity=-0.021  Sum_probs=56.3

Q ss_pred             hhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          41 SGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        41 ~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .....++.+..|++|+.+.|+.+....+|..++|.+.|++.+.    .+|++.|++.+++.+++.+...++.
T Consensus       127 ~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~----~gwr~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       127 QPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFES----FGWRGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHHHHhC
Confidence            4445566777788899999999999999999999999999884    6899999999998887766555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.51  E-value=1.1e-06  Score=73.80  Aligned_cols=91  Identities=15%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc-------------------c
Q psy3469          26 VGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK-------------------P   85 (154)
Q Consensus        26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~-------------------~   85 (154)
                      ++...+...+.+...+....+++|..| ++||.+.++.+....+|.++++.+...+....                   .
T Consensus       119 ~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (502)
T TIGR00887       119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPA  198 (502)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccch
Confidence            334444444455556777889999887 77999999999999999999999887654210                   0


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          86 TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        86 ~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      ...+||..|.+.++..++..+ +.++.++.+.
T Consensus       199 ~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr  229 (502)
T TIGR00887       199 VDYMWRILIGFGAVPALLALY-FRLTIPETPR  229 (502)
T ss_pred             hcccHHHHHHHHHHHHHHHHH-HHHhCCCCHH
Confidence            124799999766655554433 3445555543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.50  E-value=7e-07  Score=72.08  Aligned_cols=76  Identities=18%  Similarity=0.348  Sum_probs=60.9

Q ss_pred             HHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          33 LGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        33 ~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      ..+.+...+...+...+..| +++|+..|+.+.+..+|..++|.+.|++.+.    .+|+..|++.+++.+++.+...+.
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~----~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        322 GAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN----YGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh----cchhHHHHHHHHHHHHHHHHHHHH
Confidence            33444445566667777666 6799999999999999999999999999884    689999999999988887766554


Q ss_pred             c
Q psy3469         112 A  112 (154)
Q Consensus       112 ~  112 (154)
                      .
T Consensus       398 ~  398 (408)
T PRK09874        398 L  398 (408)
T ss_pred             H
Confidence            4

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.49  E-value=9.4e-07  Score=70.75  Aligned_cols=98  Identities=10%  Similarity=0.040  Sum_probs=66.1

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+..+++.+...+.+ +.+..+....+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+.
T Consensus        84 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        84 IVLFSAGTLACGFAP-GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444555555554 55443433343334445555666778889776 7799999999999999999999999998874


Q ss_pred             cccccchHHHHHHHHHHHHHHH
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSS  105 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~  105 (154)
                      .  ..+|++.|++.+...++..
T Consensus       163 ~--~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       163 W--GDGWRALFFISILPIIFAL  182 (405)
T ss_pred             c--CccHHHHHHHHHHHHHHHH
Confidence            1  1359999987655544443

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.48  E-value=2.3e-06  Score=68.15  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=53.6

Q ss_pred             hhhhhhhhcccCc-chHHHH--HHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          40 YSGFKVNHLDISP-RFAGIL--MSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~--~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      .+...+...|..| +.|+.+  .+......++|..++|.+.|++.+.    .+|++.|++.+.+.++..+...++.++.
T Consensus       105 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~  179 (375)
T TIGR00899       105 NPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG----FGFTVMFLTAALAFVLCGVLVWLFLPSY  179 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh----cccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4445556667665 335433  6888888999999999999999874    6899999999888777776666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.48  E-value=2e-06  Score=69.84  Aligned_cols=105  Identities=15%  Similarity=-0.079  Sum_probs=69.9

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+..+++.+...+.+ +.+..+....+.....+...+..++.+.|..| ++++.+.++......++..++|.+.+++.+.
T Consensus        85 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~  163 (406)
T PRK15402         85 VAFFILTCLAILLAQ-SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV  163 (406)
T ss_pred             HHHHHHHHHHHHHHc-cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334444445555544 44333332222222333334556677788776 5688889999988899999999999999874


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                          .+|++.|++.+++.++..+...+..++
T Consensus       164 ----~~w~~~~~~~~~~~~~~~~~~~~~~~~  190 (406)
T PRK15402        164 ----LPWRGMFVLFAALAALSFFGLWRAMPE  190 (406)
T ss_pred             ----cCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence                689999999888888776655554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.47  E-value=1.2e-06  Score=69.77  Aligned_cols=87  Identities=13%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +.+..+....+..++.+...+......+|..|++++++.|+.+...++|..++|.+.|++.+.    .+|+..|++.+.+
T Consensus       287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~----~g~~~~~~~~~~~  362 (375)
T TIGR00899       287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAER----WSYHAVYWFAIVM  362 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHH
Confidence            333333333333344455555666778888898888999999999999999999999999884    6799999999988


Q ss_pred             HHHHHHHHHHh
Q psy3469         101 YLFSSTFYIFA  111 (154)
Q Consensus       101 ~~i~~~~~~~~  111 (154)
                      .+++.+...+.
T Consensus       363 ~~~~~~~~~~~  373 (375)
T TIGR00899       363 LIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHhee
Confidence            88887766443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.47  E-value=2.4e-06  Score=69.12  Aligned_cols=71  Identities=15%  Similarity=0.103  Sum_probs=56.3

Q ss_pred             hhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          39 VYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        39 ~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      ..+..++...|..| ++||++.|+.+.+..+|.+++|.+.|++.+.   ..+|...|+....+.+++.+..++..
T Consensus       325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL---GRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc---CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566778888777 6799999999999999999999999999884   35677778777777777666555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.47  E-value=2.5e-06  Score=68.94  Aligned_cols=104  Identities=13%  Similarity=-0.018  Sum_probs=72.3

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..++..++..+.+ +.+..++...+...+.+...+.....+.|..| ++++.+.|+......++..++|.+.+++.+
T Consensus        74 ~~~~~~~~~~l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         74 LVALCVIGNAMFTLSS-SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            4455556666666665 55544444344343344444455566777776 579999999999999999999999999987


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .    .+||+.|++.+.+.++..+...+..
T Consensus       153 ~----~gwr~~f~~~~~~~~~~~~~~~~~l  178 (382)
T PRK10091        153 E----FSWRYTFLLIAVFNIAVLASIYFWV  178 (382)
T ss_pred             h----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4    6899999999887776665444433

>KOG2504|consensus

Probab=98.47  E-value=3.7e-07  Score=77.43  Aligned_cols=106  Identities=12%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +++++.+++.+.+++.. +.+..+....+..++.|...+....++.|+.+ ++...+.|+...+..++.+++|++.|++.
T Consensus       370 ~~ll~~gl~~~~~p~~~-~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~  448 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFAT-TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY  448 (509)
T ss_pred             HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence            45666666666666654 44332222233333344444444457888765 88999999999999999999999999999


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      |.   +++|...|++++...+++.+++++..
T Consensus       449 d~---tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  449 DI---TGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ec---cCCeeeehhhcChHHHHHHHHHHHhH
Confidence            95   57799999999999999998887766

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.46  E-value=3.7e-06  Score=69.02  Aligned_cols=106  Identities=15%  Similarity=0.066  Sum_probs=70.9

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      ++++.+++.+...+.+ +.+..++...+.....+...+..+..+.|..| ++++.+.++.+....++..++|.+.+++.+
T Consensus        87 ~~~~~~~~~~~~~~a~-~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403         87 GALIFTLACAATLFTT-SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555554 54333333232222223323445567888777 568999999999999999999999999887


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                      .    .+|++.|++.+++.+++.+...+..++
T Consensus       166 ~----~gw~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        166 F----VHWKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             h----cCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3    689999999988888776654444443

>PRK10504 putative transporter; Provisional

Probab=98.45  E-value=3.2e-06  Score=69.96  Aligned_cols=103  Identities=13%  Similarity=0.129  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      ++.+++.+...+.+ +.+..++...+...+.+...+...+.+.|..| ++++.+.|+.+...++|..++|.+.|++.+. 
T Consensus        83 ~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-  160 (471)
T PRK10504         83 VLFTLGSLFCALSG-TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-  160 (471)
T ss_pred             HHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-
Confidence            34444444444443 44443333344444444445666777888877 6799999999999999999999999999984 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          85 PTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                         .+|++.|.+...+..++.+......+
T Consensus       161 ---~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        161 ---ASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               68999999988877777666655543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.44  E-value=1.4e-06  Score=73.58  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             HHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          34 GFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        34 ~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      .+.|...+...+.+.|..| +  +|+++.++.+...++|++++|.+.|++.+.    .+|++.|.+++..++++.+.+++
T Consensus       112 iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~----~Gw~~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        112 CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE----YSWAMGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh----hChHHHHHHHHHHHHHHHHHHHH
Confidence            3345545666778889776 3  599999999999999999999999999874    68999999988777777666544


Q ss_pred             h
Q psy3469         111 A  111 (154)
Q Consensus       111 ~  111 (154)
                      .
T Consensus       188 ~  188 (493)
T PRK15462        188 G  188 (493)
T ss_pred             h
Confidence            3

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.44  E-value=3e-06  Score=71.31  Aligned_cols=80  Identities=9%  Similarity=0.215  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469          30 TIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY  108 (154)
Q Consensus        30 ~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~  108 (154)
                      .+...+.++..+..++..+++.| +..++..|+.++...+|+.+++.+.|++.|.    .||+..|.+.+++.+++.+..
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~----~G~~~~f~~~~~~~l~~l~~~  399 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA----HGWPTFYLFSVAAAVPGLLLL  399 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHH
Confidence            33333445556677888999887 5699999999999999999999999999994    679999999999999988777


Q ss_pred             HHhcc
Q psy3469         109 IFAAS  113 (154)
Q Consensus       109 ~~~~~  113 (154)
                      .+.++
T Consensus       400 ~~~~~  404 (491)
T PRK11010        400 LVCRQ  404 (491)
T ss_pred             HHHHh
Confidence            76643

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.43  E-value=4.4e-06  Score=69.98  Aligned_cols=72  Identities=10%  Similarity=0.048  Sum_probs=51.8

Q ss_pred             HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      +...+.......++.| +.||++.|+.+..+.+++.++|.+.|++.+.   .++|+..+++.....+++.+..+++
T Consensus       357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---TQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHHHHh
Confidence            3344556667778887 6799999987777888899999999999874   3457766666666666666555444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.43  E-value=2e-06  Score=68.55  Aligned_cols=78  Identities=15%  Similarity=0.085  Sum_probs=57.6

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc----ccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT----QAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~----~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      .....+...+.+.|..| ++|+.+.|+......+|.+++|.+.+.+....+.    ..+|+..|++.+++.++..+..++
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901        97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            34334566778899876 7799999999999999999999999988874210    123999999988877775554333


Q ss_pred             hcc
Q psy3469         111 AAS  113 (154)
Q Consensus       111 ~~~  113 (154)
                      ..+
T Consensus       177 ~~~  179 (356)
T TIGR00901       177 LAK  179 (356)
T ss_pred             hcc
Confidence            333

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.43  E-value=1.7e-06  Score=71.83  Aligned_cols=63  Identities=16%  Similarity=0.139  Sum_probs=49.6

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      +...+.++|..| +++|++.|+.+....+|+.++|.+.|++.+.    .+|+..|...++...+..+.
T Consensus       385 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~----~g~~~~~~~~~~~~~~~~~~  448 (496)
T PRK03893        385 GLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR----LDLGTALASLSFSLTFVVIL  448 (496)
T ss_pred             hhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHHH
Confidence            455667888877 6799999999999999999999999999984    67888776665554444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.42  E-value=2e-06  Score=71.55  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=55.2

Q ss_pred             hhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhccc-Ccc-------cccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          44 KVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQ-GKP-------TQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        44 ~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~-~~~-------~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .....|..| +.+|++.|+.+.++++ |++++|.+.|++.| ..+       ...+|+..|.+..++.+++.+..+++.
T Consensus       371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            345668887 5799999999999997 77999999999999 110       025699999999888888877776654

>TIGR00889 2A0110 nucleoside transporter

Probab=98.41  E-value=5.1e-06  Score=68.45  Aligned_cols=77  Identities=10%  Similarity=0.114  Sum_probs=60.1

Q ss_pred             HhhhhhhhhhhcccCc-chHHHHHHHHH-HHHHHHHhHhhhhhhhcccCccc--ccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          37 GAVYSGFKVNHLDISP-RFAGILMSFTN-CLANLAGLLAPIIAGYVIQGKPT--QAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~-~~~~lg~~i~P~i~G~i~~~~~~--~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      +...+.....+.|..| +++|++.|+.+ ....+|.+++|.+.|++.+..+.  +.+|+..|.+.+++.+++.+.+.++.
T Consensus       323 ~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       323 DFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334455567788887 67999999997 56789999999999999985221  14699999999998888877777776


Q ss_pred             c
Q psy3469         113 S  113 (154)
Q Consensus       113 ~  113 (154)
                      +
T Consensus       403 ~  403 (418)
T TIGR00889       403 K  403 (418)
T ss_pred             C
Confidence            4

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.41  E-value=2.7e-06  Score=69.11  Aligned_cols=87  Identities=17%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +.+..+....+..++.+...+......+|..|+++|++.|+.+...++|..++|.+.|++.+.    .+|+..|++.+.+
T Consensus       304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~----~g~~~~~~~~~~~  379 (393)
T PRK15011        304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI----WNYHAVFWFALVM  379 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHH
Confidence            333333333333334444445556677888898899999999999999999999999999984    6899999988888


Q ss_pred             HHHHHHHHHHh
Q psy3469         101 YLFSSTFYIFA  111 (154)
Q Consensus       101 ~~i~~~~~~~~  111 (154)
                      .+++.+..++.
T Consensus       380 ~~~~~~~~~~~  390 (393)
T PRK15011        380 IIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHhh
Confidence            88877766554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.41  E-value=2.2e-06  Score=69.15  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      .+.....+.|..| ++|+.+.|+.+....+|.+++|.+.|.+.+.    .+|+..|++.+.+.+++.+...++.+++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS----YGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3445566777666 6799999999999999999999999999874    6799999999988887777666655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.41  E-value=5.9e-06  Score=67.26  Aligned_cols=104  Identities=12%  Similarity=0.026  Sum_probs=71.8

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .++...+++.+..++.+ +.+..++.-.+...+.+...+.....+.+..|++|+.+.|+.+....+|..+++.+.+++.+
T Consensus        79 ~~~~l~~~~~~~~~~a~-~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~  157 (393)
T PRK09705         79 ISLLLIAVGALMRELYP-QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQ  157 (393)
T ss_pred             HHHHHHHHHHHHHHHCc-chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677777777775 55444444444444444444555667777778889999999999999999999999999887


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      .   ..+|+..|.+.+...++..+.+++
T Consensus       158 ~---~~~w~~~~~~~~~~~~~~~~~~~~  182 (393)
T PRK09705        158 H---SETWYQTLAWWALPAVVALFAWWW  182 (393)
T ss_pred             h---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4   247999887766555544443333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.38  E-value=3.8e-06  Score=67.91  Aligned_cols=105  Identities=13%  Similarity=-0.026  Sum_probs=67.9

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      ++..++..+...+.+ +.+..++...+...+.+...+.......|..+ ++++.+.++.+....++..++|.+.|++.+.
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~  158 (394)
T PRK11652         80 MSIFILGTLVALFAH-SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL  158 (394)
T ss_pred             HHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444445443 44333333333333333333444556677666 6799999999999999999999999999873


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                          .+|+..|++.+.+.++..+...++.++
T Consensus       159 ----~g~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        159 ----FGWRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             ----cChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                679999999887766665554444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.37  E-value=2.3e-06  Score=70.49  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             hhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          44 KVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        44 ~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      .....|..| +++|++.|+.+++.++|++++|.+.|++.|.    .+|+..|++.+++.+++++..+.+.++++
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI----WHWTGFFVVISIAAGISALLLLPFLNAQA  428 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh----cccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            345677775 7899999999999999999999999999984    67999999999999888876666554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.37  E-value=3.6e-06  Score=65.59  Aligned_cols=102  Identities=19%  Similarity=0.265  Sum_probs=77.0

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+...++.+.....+ +.+.......+...+.+...+...+...|..| ++|++..|+.+...+++..++|.+.|.+.+
T Consensus       248 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         248 GLLLAALGLLLLALAP-SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444555555555543 44444444454555555556778888999887 789999999999999999999999999998


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      .    .+|+..|++.+.+.+++.+...+
T Consensus       327 ~----~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         327 T----GGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             c----cCcchHHHHHHHHHHHHHHHhee
Confidence            4    78999999999998888776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG4686|consensus

Probab=98.36  E-value=5.3e-06  Score=65.99  Aligned_cols=99  Identities=17%  Similarity=0.313  Sum_probs=69.6

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcch-HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRF-AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV   99 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~-~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~   99 (154)
                      +++..+.++.++..+..   ...|.+++.+.|++ .|+++|+++.+.++|-.+.|+++|.+.|..++...-...|..++.
T Consensus       354 sPy~~m~~lGLsysllA---cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  354 SPYTSMTFLGLSYSLLA---CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             cHHHHHHHHhhhHHHHH---HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            55666666655554432   34789999999955 899999999999999999999999999964322222234555666


Q ss_pred             HHHHHHHHHHHhccCCccCCCCC
Q psy3469         100 VYLFSSTFYIFAASGDRQPWDNP  122 (154)
Q Consensus       100 ~~~i~~~~~~~~~~~~~q~w~~~  122 (154)
                      +.++...+.+...++++..-++.
T Consensus       431 ~aL~svgil~~~N~kq~gnLN~~  453 (459)
T KOG4686|consen  431 MALTSVGILFYLNKKQSGNLNRK  453 (459)
T ss_pred             HHHHHHHHHhheeccccCCCCCC
Confidence            66666666666666666655553

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.36  E-value=3.8e-06  Score=66.31  Aligned_cols=78  Identities=22%  Similarity=0.320  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469          29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      ..+..+..+ ..+..++..+|..| ++||++.|+.+.+.++|+.++|.+.|++.+.   .++|+..|++.+.+.+++.+.
T Consensus       319 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       319 VALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT---TGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             HHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC---CCchhHHHHHHHHHHHHHHHH
Confidence            333333333 45678888999877 6799999999999999999999999999985   233999999998888888776


Q ss_pred             HHH
Q psy3469         108 YIF  110 (154)
Q Consensus       108 ~~~  110 (154)
                      .++
T Consensus       395 ~~~  397 (399)
T TIGR00893       395 YLL  397 (399)
T ss_pred             HHH
Confidence            654

>TIGR00898 2A0119 cation transport protein

Probab=98.36  E-value=5.3e-06  Score=69.26  Aligned_cols=102  Identities=11%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             cchhHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           4 GQYGPAVCLVAASYTGCDP-YLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      ++++.+++.+++.+.+... +..+.+..++.++.+...+..+....|..| +.|+++.|+.+.++.+|++++|.+.+ +.
T Consensus       391 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~  469 (505)
T TIGR00898       391 SLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG  469 (505)
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH
Confidence            3445555555555554222 333444445555555556777888999888 67999999999999999999999999 44


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      +     .++...|++.+++.+++.++.+++
T Consensus       470 ~-----~~~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       470 E-----KWLFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             H-----HHHhhHHHHHHHHHHHHHHHHHcC
Confidence            3     446677888777777776665544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.35  E-value=4.7e-06  Score=69.03  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=66.8

Q ss_pred             cchhHHHHHHHHhhcC---CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhH-hhhhhh
Q psy3469           4 GQYGPAVCLVAASYTG---CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLL-APIIAG   78 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i-~P~i~G   78 (154)
                      ++++.++..+.+.+.+   .+.+..+.+..+...+.+...+.....+.|..| ++||.+.|+.+....+|+.+ +|.+..
T Consensus        99 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~  178 (452)
T PRK11273         99 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLL  178 (452)
T ss_pred             HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3344444444444432   123233333333333444444555566777666 77999999999999998755 454433


Q ss_pred             hcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469          79 YVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP  118 (154)
Q Consensus        79 ~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~  118 (154)
                      .+..    ..+|++.|++.+.+.++..++.+++.++++++
T Consensus       179 ~~~~----~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        179 GMAW----FNDWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             HHHH----hccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            3333    25899999999888777766666666655543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.35  E-value=6.1e-06  Score=70.30  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=79.5

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.++.+++++.+++.+ +.+..+..+.+..++.........+..+...| +.+|++.+++++....+..+|.++.|.+.+
T Consensus       290 ~~~~~a~~~~~lal~~-~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  290 ASLLFALALLLLALSP-SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677777765 66666665665555555555667778888888 559999999999999999999999999998


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .    .+.+..+.+.+++++++.++.....
T Consensus       369 ~----~g~~~al~~a~~~lll~~~~~~~~~  394 (524)
T PF05977_consen  369 H----FGVRTALLIAGAALLLSALIALRFP  394 (524)
T ss_pred             H----hCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4    6788888888887777777665553

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.35  E-value=2.2e-06  Score=70.09  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHH-HHHHHHHHHhHhhhhhhhccc
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSF-TNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~-~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .++.++.++++.+.+ +.+..+....+.....+.........+.+..| +.+++..+. .++...+|.+++|.+.|++.|
T Consensus       299 ~~l~~~~~~l~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~  377 (420)
T PRK09528        299 GTIMAVRIIGSGFAT-GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD  377 (420)
T ss_pred             HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555554 55433332232222233333344456677666 668887766 678899999999999999999


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      .    .+|+..|.+.+++.+++.++..++.+++
T Consensus       378 ~----~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        378 S----IGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             h----hCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4    6799999999998888777666655443

>KOG1330|consensus

Probab=98.34  E-value=1.8e-07  Score=77.72  Aligned_cols=107  Identities=9%  Similarity=-0.002  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      .+=.++.+..++.. +.|..+++-.+...+-....+...+.+.|..| ++|+.+.|+.+++...|..+|-.+.+++... 
T Consensus       106 ~iW~~Av~~~~fs~-~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~-  183 (493)
T KOG1330|consen  106 FIWTLAVFASGFSN-HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL-  183 (493)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC-
Confidence            33334444445442 55655555555555544556778889999998 6799999999999999999999999999885 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          85 PTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                        +..||+.|+..+.+.++.+++..++.++.+
T Consensus       184 --~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  184 --TFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             --ccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence              455999999999999988877777665443

>PRK11043 putative transporter; Provisional

Probab=98.33  E-value=6.8e-06  Score=66.57  Aligned_cols=101  Identities=12%  Similarity=0.081  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      +..++..+...+.+ +.+..++...+...+.+...+...+...|..| ++++...+..+....++..++|.+.|++.+. 
T Consensus        79 ~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-  156 (401)
T PRK11043         79 SLFALGSLGMLWVE-SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-  156 (401)
T ss_pred             HHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            34444444444444 44333332222222223333445567778776 5688889999999999999999999999884 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          85 PTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                         .+|+..|++.+.+.++..+...++
T Consensus       157 ---~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        157 ---FGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             ---CChHHHHHHHHHHHHHHHHHHHHc
Confidence               689999999888877776655444

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.33  E-value=4e-06  Score=68.31  Aligned_cols=91  Identities=10%  Similarity=0.032  Sum_probs=62.5

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..+++.++..+.+ +.+..++...+...+.+...+.....+.|..| ++|+.+.|+......+|.+++|.+.+.+.+
T Consensus        89 ~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~  167 (426)
T PRK12307         89 SIVAYSVGTGLSGLAS-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE  167 (426)
T ss_pred             HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence            3444455555555543 44433333333333334445566678888777 679999999999999999999999999887


Q ss_pred             CcccccchHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAV   99 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~   99 (154)
                      .    .+|++.|++...
T Consensus       168 ~----~~w~~~f~i~~~  180 (426)
T PRK12307        168 A----YGWRAAFFVGLL  180 (426)
T ss_pred             c----CCHHHHHHHHHH
Confidence            4    689999987543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.31  E-value=9.1e-06  Score=66.13  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             cchhHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469           4 GQYGPAVCLVAASYTGC--DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYV   80 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i   80 (154)
                      +.++.++++..+.+.+.  +.+....+..+..++.....+...+.+.|..| ++|+.+.++......+|.++++.+.+++
T Consensus        74 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         74 TQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34455555555555421  22322222223334444445677888899877 5699999999999999999999999998


Q ss_pred             ccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469          81 IQGKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      .+.   ..+|+..|++.+.+.++..+.
T Consensus       154 ~~~---~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        154 ADR---VLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             Hhc---ccCHHHHHHHHHHHHHHHHHH
Confidence            873   248999999988887766554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.31  E-value=4.4e-06  Score=70.46  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=69.1

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGYV   80 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~i   80 (154)
                      |.++.+++.+++.+........++.+.+...+.+...+...+.+.|..| +  +|+.+.++.+...++|.+++|.+.|++
T Consensus        87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555443112222223333334445556667788899775 4  358899999999999999999999999


Q ss_pred             ccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      .+.    .+|++.|++.++..+++.+.+.+.
T Consensus       167 ~~~----~gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        167 ADK----FGYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHh----hChHHHHHHHHHHHHHHHHHHHHc
Confidence            884    689999999776665555554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.30  E-value=9.9e-06  Score=65.80  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             hhhhhhhhcccCc-chH--HHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          40 YSGFKVNHLDISP-RFA--GILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~--g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      .+.......|..+ +.|  +...++.+...++|.+++|++.|++.+.    .+|+..|++.+...++..+...++.++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~----~gw~~~f~~~~~~~~~~~~~~~~~~~~~  197 (393)
T PRK15011        123 NPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG----FSFTVMYLSAAVAFIVCGVMVWLFLPSM  197 (393)
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh----cChHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            3444455566544 323  4556888889999999999999999874    6899999999888777776666555544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.29  E-value=6e-06  Score=69.71  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=68.4

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGYV   80 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~i   80 (154)
                      +.++.+++.+++.+...+.....+...+...+.+...+...+.+.|..| +  +++.+.++.+.+.++|.+++|.+.|++
T Consensus        94 g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l  173 (500)
T PRK09584         94 GAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWL  173 (500)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555543122222222233333345445566678888765 2  255688899999999999999999999


Q ss_pred             ccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      .+.    .+|++.|.+.++..+++.+.+++.
T Consensus       174 ~~~----~g~~~~F~i~~i~~~i~~i~~~~~  200 (500)
T PRK09584        174 AAK----YGWSVAFALSVVGMLITVVNFAFC  200 (500)
T ss_pred             HHh----hCHHHHHHHHHHHHHHHHHHHHHh
Confidence            884    689999999887777776655543

>PTZ00207 hypothetical protein; Provisional

Probab=98.29  E-value=1.2e-05  Score=69.47  Aligned_cols=108  Identities=10%  Similarity=-0.103  Sum_probs=67.2

Q ss_pred             cchhHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhh
Q psy3469           4 GQYGPAVCLVAASYTG-----CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAG   78 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G   78 (154)
                      |.+..+++.++..+..     .+.+...+...+...+.++........+.+..|++||.+.|+......+|+++.+.+..
T Consensus        97 g~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~  176 (591)
T PTZ00207         97 SMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQL  176 (591)
T ss_pred             HHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555554431     13333333333333333333444555777788999999999999999999986555544


Q ss_pred             hcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          79 YVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        79 ~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      .+..     .+|+..|++.+.+.++..+++.++.+..+
T Consensus       177 ~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        177 AFFS-----DNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHHH-----HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            4443     24788888888888877777777665443

>PRK09952 shikimate transporter; Provisional

Probab=98.29  E-value=1.2e-05  Score=66.49  Aligned_cols=81  Identities=12%  Similarity=0.087  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHH-HHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469          29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLAN-LAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST  106 (154)
Q Consensus        29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~  106 (154)
                      ..+...+.+...+..++.+.|..| +.|+++.|+.+..+. +++.++|.+.|++.+.  ..++|...|.+.+++.+++.+
T Consensus       350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~--~~~~~~~~~~~~~~~~~i~~v  427 (438)
T PRK09952        350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY--FGGSWHSVAIYLLAGCLISAM  427 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHH
Confidence            333344455556678889999887 679999999776654 8999999999999884  124688899988888888887


Q ss_pred             HHHHh
Q psy3469         107 FYIFA  111 (154)
Q Consensus       107 ~~~~~  111 (154)
                      ..++.
T Consensus       428 ~~~~~  432 (438)
T PRK09952        428 TALLM  432 (438)
T ss_pred             HHHHc
Confidence            76654

>PRK10054 putative transporter; Provisional

Probab=98.29  E-value=6.6e-06  Score=67.13  Aligned_cols=81  Identities=17%  Similarity=0.237  Sum_probs=58.1

Q ss_pred             HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      +...+..++.+.+..| +.+|++.|..+ ...+|.+++|.+.|++.|.    .++...|++.+....++.++.  +.+.+
T Consensus       313 ~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~----~g~~~~~~~~~~~~~~~~~~~--~~~~~  385 (395)
T PRK10054        313 IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT----LPPWSLFVILALAIVAAWLLM--LKGMR  385 (395)
T ss_pred             HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH----cChhhHHHHHHHHHHHHHHHH--Hhccc
Confidence            3334555667778777 66899988765 6779999999999999995    567777777655555444433  36667


Q ss_pred             ccCCCCCCC
Q psy3469         116 RQPWDNPNN  124 (154)
Q Consensus       116 ~q~w~~~~~  124 (154)
                      ..+|.+|..
T Consensus       386 ~~~~~~~~~  394 (395)
T PRK10054        386 ARPWGQPAL  394 (395)
T ss_pred             cCcccCCcC
Confidence            779999853

>PRK03545 putative arabinose transporter; Provisional

Probab=98.28  E-value=1.1e-05  Score=65.17  Aligned_cols=69  Identities=13%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             hhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          41 SGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        41 ~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      +.....+.+..|+.+|.+.|+.+...++|..++|.+.|++.+.    .+++..|.+.+.+.+++.+...+..+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        313 LAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLH----LGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            3445666777888899999999999999999999999999985    78999999999999888887766653

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.28  E-value=1.4e-05  Score=67.27  Aligned_cols=103  Identities=13%  Similarity=0.052  Sum_probs=70.4

Q ss_pred             chhHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           5 QYGPAVCLVAASYTGC--DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      .+..++++..+++...  +.+.......+...+.+.......+...|..| ++||.+.|+......+|.++++.+.+++.
T Consensus        88 ~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010         88 QLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445421  23333333333333444445567788889887 78999999999999999999999999998


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      +.   ..+|+..|++.+.+.++..+..++
T Consensus       168 ~~---~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        168 DR---YLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             hc---ccCHHHHHHHHHHHHHHHHHHHHh
Confidence            72   258999999998887776554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.28  E-value=1.1e-05  Score=67.04  Aligned_cols=90  Identities=11%  Similarity=0.057  Sum_probs=61.6

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+..++..+.+.+.+ +.+..++...+...+.+...+.....+.|..| ++|+.+.|+.+....+|..++|.+.+++.+.
T Consensus        92 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  170 (496)
T PRK03893         92 IVLFSVGTLACGFAP-GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV  170 (496)
T ss_pred             HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344444455555543 44433333333333334445566677888776 6799999999999999999999999999884


Q ss_pred             cccccchHHHHHHHHH
Q psy3469          84 KPTQAAWRVVFVAAAV   99 (154)
Q Consensus        84 ~~~~~~~~~~F~~~~~   99 (154)
                          .+|++.|++...
T Consensus       171 ----~~w~~~f~~~~~  182 (496)
T PRK03893        171 ----WGWRALFFIGIL  182 (496)
T ss_pred             ----CCHHHHHHHHHH
Confidence                789999987543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.27  E-value=3e-06  Score=69.95  Aligned_cols=107  Identities=18%  Similarity=0.211  Sum_probs=75.7

Q ss_pred             cchhHHHHHHHHhhcCCC-hhH-HHHHHHHHHHHHHhhhhhhhhhhcccCcch-HHHHHHHHHHHHHH-HHhHhhhhhhh
Q psy3469           4 GQYGPAVCLVAASYTGCD-PYL-TVGILTIGLGFNGAVYSGFKVNHLDISPRF-AGILMSFTNCLANL-AGLLAPIIAGY   79 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~-~g~~~g~~~~~~~l-g~~i~P~i~G~   79 (154)
                      .+++..+++...-..+.+ .+. .+.+++++....|. +...-....|+.|++ .|++.|+.+.++++ |..++..+.|+
T Consensus       327 ~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGP-qmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~  405 (448)
T COG2271         327 FMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGP-QMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY  405 (448)
T ss_pred             HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhH-HHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence            344444444444444422 233 33333444444444 344556778899965 89999999999999 99999999999


Q ss_pred             cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      +.|.    .+|...|++..+..+++.++++.+.+.+
T Consensus       406 i~d~----~gW~g~Fi~~~~~a~l~~lll~~~~~~~  437 (448)
T COG2271         406 IADT----WGWDGGFIVLSIAALLAILLLLPVWNAE  437 (448)
T ss_pred             eEec----CCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence            9994    7899999999999988888777776544

>TIGR00898 2A0119 cation transport protein

Probab=98.26  E-value=3.8e-06  Score=70.11  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.++......+|.+++|.+.+.+. 
T Consensus       163 ~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-  240 (505)
T TIGR00898       163 STLVTAVSGVLTAFSP-NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-  240 (505)
T ss_pred             HHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            4445555555666655 55544444444444455556677889999877 67999999999999999999998876653 


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                            +|++.|++.++..++..+.+ ++.++.
T Consensus       241 ------~wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       241 ------DWRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence                  29999999988877776655 444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.25  E-value=1.8e-05  Score=64.35  Aligned_cols=70  Identities=9%  Similarity=-0.012  Sum_probs=57.6

Q ss_pred             hhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          43 FKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        43 ~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      .++...|..| ++|+++.|+.+....+|..++|++.+++.+.    .+||..|++.+.+.++..+++.++.++++
T Consensus        99 ~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~----~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903        99 AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA----GGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3445567665 7899999999999999999999999999874    78999999988888887776666665544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00897 2A0118 polyol permease family

Probab=98.25  E-value=1.6e-05  Score=64.79  Aligned_cols=65  Identities=28%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             hhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          43 FKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        43 ~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      ......|..|+++|++.|+.+...++++.++|.+.|++.+.    .+|...|++.+++.+++.+...+.
T Consensus       336 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~----~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       336 LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF----FGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHHHHHh
Confidence            34566778889999999999999999999999999999985    679999999998888877765544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.25  E-value=6.1e-06  Score=67.08  Aligned_cols=94  Identities=10%  Similarity=0.023  Sum_probs=67.6

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccc
Q psy3469           9 AVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQ   87 (154)
Q Consensus         9 ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~   87 (154)
                      ++....+.+.. +....+.++.++.++.....+..+++.+|..| +.||++.|+.+..+++++.++|++.|.+..     
T Consensus       268 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----  341 (368)
T TIGR00903       268 AAFFLALAFEL-NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----  341 (368)
T ss_pred             HHHHHHHHHcc-ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----
Confidence            33333444333 34444445555555555556678889999888 579999999999999999999999998873     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHH
Q psy3469          88 AAWRVVFVAAAVVYLFSSTFYI  109 (154)
Q Consensus        88 ~~~~~~F~~~~~~~~i~~~~~~  109 (154)
                       +....|.+.+...+++.+..+
T Consensus       342 -~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       342 -SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHH
Confidence             356778777888887777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.24  E-value=6.8e-06  Score=64.02  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=74.1

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..+++.+...+.+ +.+..+....+...+.+...+...+...|..| ++|+.+.|+.+....+|..++|.+.+.+.+
T Consensus        70 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          70 GLLLFALGSLLLAFAS-SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555543 54444444444444455556677788899887 579999999999999999999999999988


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      .    .+|+..|++.+.+.+++.+...+
T Consensus       149 ~----~~~~~~~~~~~~~~~~~~~~~~~  172 (352)
T cd06174         149 S----LGWRWLFLILAILGLLLALLLLF  172 (352)
T ss_pred             H----hhHHHHHHHHHHHHHHHHHHHHH
Confidence            4    66999999988887777665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.24  E-value=6e-06  Score=72.98  Aligned_cols=109  Identities=12%  Similarity=0.017  Sum_probs=72.6

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      +++.+++.++..+.+ +.+..+++..+..++.+...+..++++.|+.| ++||...++++.+..+|.+++|.++..+...
T Consensus       239 lil~~i~~ll~afa~-s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~  317 (742)
T TIGR01299       239 LSVNGFFAFFSSFVQ-GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH  317 (742)
T ss_pred             HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444455555554 54444444445555556666788889999887 7799999999999999999999887766542


Q ss_pred             cc---------cccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          84 KP---------TQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        84 ~~---------~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      .+         ...+||+.|++.++..++..+. .++.++.
T Consensus       318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~-~~~lPES  357 (742)
T TIGR01299       318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA-LTFMPES  357 (742)
T ss_pred             ccchhccccccccccHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence            11         1246999998877766655443 3444444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.24  E-value=5.9e-06  Score=67.51  Aligned_cols=102  Identities=9%  Similarity=0.031  Sum_probs=63.9

Q ss_pred             hHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469           7 GPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP   85 (154)
Q Consensus         7 ~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~   85 (154)
                      ..++.++.+.+.+ +.+..+....+...+.+...+...+.+.+..| +++|++.|+.+++..+|..++|.+.|++.|..+
T Consensus       283 ~~~~~~~~l~~~~-~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        283 IMSLSMFPIGMVS-NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            3344444444443 44333222222223333444566778888877 779999999999999999999999999998522


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHH
Q psy3469          86 TQAAWRVVFVAAAVVYLFSSTFYI  109 (154)
Q Consensus        86 ~~~~~~~~F~~~~~~~~i~~~~~~  109 (154)
                      +.......|+..+.+.+++.+...
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        362 ALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             hcCCcchHHHHHHHHHHHHHHHHH
Confidence            212245666666666666655433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.23  E-value=6.6e-06  Score=66.78  Aligned_cols=69  Identities=14%  Similarity=0.074  Sum_probs=57.5

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      +..+..+.|..| ++||++.|+.+.+.+++++++|.+.|++.+.    .+|++.|++.+++.+++.+...++.+
T Consensus       402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~----~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES----IGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccceehhHHHHHHHHHHHHheecc
Confidence            445566688877 6799999999999999999999999999884    57999999998888888777665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.23  E-value=1.6e-05  Score=64.89  Aligned_cols=71  Identities=11%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHH
Q psy3469          35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYI  109 (154)
Q Consensus        35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~  109 (154)
                      +.+...+...+.+.|..| ++++.+.++.+...++|..++|.+.|++.+.    .+|++.|++.+...+++.+...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~----~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T PRK10489        123 FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA----GGVAWNYGLAAAGTFITLLPLL  194 (417)
T ss_pred             HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHH
Confidence            344444556677888776 6799999999999999999999999999873    6799999888777766655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.23  E-value=6.9e-06  Score=66.66  Aligned_cols=84  Identities=13%  Similarity=-0.004  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhh---hhcccCcccccchHHHHHHHHHHH
Q psy3469          26 VGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIA---GYVIQGKPTQAAWRVVFVAAAVVY  101 (154)
Q Consensus        26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~---G~i~~~~~~~~~~~~~F~~~~~~~  101 (154)
                      ++...+...+.+...+....++.|..| ++|+.+.|+.+....+|.+++|.+.   +.+.+    ..+|++.|++.+...
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~w~~~f~~~~~~~  206 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN----TLGWRIPLGLQLIPA  206 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC----CccHHHHHHHHHHHH
Confidence            333333334445555667778899876 7799999999999999999999998   66555    378999999966555


Q ss_pred             HHHHHHHHHhccC
Q psy3469         102 LFSSTFYIFAASG  114 (154)
Q Consensus       102 ~i~~~~~~~~~~~  114 (154)
                      ++..+. .++.++
T Consensus       207 ~~~~~~-~~~l~~  218 (481)
T TIGR00879       207 GLLFLG-LFFLPE  218 (481)
T ss_pred             HHHHHH-HhcCCC
Confidence            555443 333443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.20  E-value=6.9e-06  Score=64.79  Aligned_cols=66  Identities=20%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSS  105 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~  105 (154)
                      .+...+......+|..| +++|++.|+.+....+|..++|.+.|++.+.    .+|+..|.+.+++.+++.
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE----IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHhc
Confidence            34434555667888776 7799999999999999999999999999884    679999999888777654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.19  E-value=2.2e-05  Score=62.29  Aligned_cols=75  Identities=17%  Similarity=0.321  Sum_probs=49.5

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC----c--ccccchHHHH-HHHHHHHHHHHHHHHHhc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG----K--PTQAAWRVVF-VAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~----~--~~~~~~~~~F-~~~~~~~~i~~~~~~~~~  112 (154)
                      ....+.+.|..| ++|+.+.++...+.++|..+++.+.+.+...    .  ....+|++.| +..+++.++..++..++.
T Consensus       109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  188 (366)
T TIGR00886       109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG  188 (366)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence            445667888776 6799999999988888888887777665531    0  0124799999 444555555555444544


Q ss_pred             cCC
Q psy3469         113 SGD  115 (154)
Q Consensus       113 ~~~  115 (154)
                      +++
T Consensus       189 ~~~  191 (366)
T TIGR00886       189 ADT  191 (366)
T ss_pred             ccC
Confidence            443

>KOG2533|consensus

Probab=98.19  E-value=2.8e-06  Score=71.90  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc--ccccchHHHHHHHH
Q psy3469          22 PYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK--PTQAAWRVVFVAAA   98 (154)
Q Consensus        22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~--~~~~~~~~~F~~~~   98 (154)
                      .+..+++-.+...+.+...|+...++.... ++++|...|+++...++|+++++++...+....  ....+|++.|++.+
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G  213 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG  213 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH
Confidence            333333344444445555666666777765 478999999999999999999999988864321  12478999999999


Q ss_pred             HHHHHHHHHHHHhccCCccCC
Q psy3469          99 VVYLFSSTFYIFAASGDRQPW  119 (154)
Q Consensus        99 ~~~~i~~~~~~~~~~~~~q~w  119 (154)
                      ++.++..++.+++.+.+|.+-
T Consensus       214 ~i~~~~gi~~f~~lp~~P~~~  234 (495)
T KOG2533|consen  214 VITLVLGIVVFFFLPDNPSKA  234 (495)
T ss_pred             HHHHHHHheEEEEecCChhhc
Confidence            999999888878877776533

>KOG3764|consensus

Probab=98.19  E-value=6e-06  Score=67.87  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=77.5

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhh----hhhhhhcccCcc--hHHHHHHHHHHHHHHHHhHhhhh
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYS----GFKVNHLDISPR--FAGILMSFTNCLANLAGLLAPII   76 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----~~~~~~~d~~p~--~~g~~~g~~~~~~~lg~~i~P~i   76 (154)
                      +|+.++....+++++.. +.+    .+.++..++|...+    ...++++|..|+  +||.+.|+.-.+-.+|-.++|..
T Consensus       141 ~Gl~vmf~sTilFafg~-sy~----~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf  215 (464)
T KOG3764|consen  141 AGLFVMFLSTILFAFGN-SYP----MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF  215 (464)
T ss_pred             HHHHHHHHHHHHHHHcc-hhH----HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc
Confidence            46666666667777654 444    33444455544433    344588898873  48999999999999999999999


Q ss_pred             hhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          77 AGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        77 ~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      +|.+.+.    .|++..|+++++++++-..+-++..+..
T Consensus       216 GGilYe~----~Gk~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  216 GGILYEF----AGKSAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             ccchHhh----cCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence            9999995    8899999999999998877766665443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.18  E-value=1.3e-05  Score=67.07  Aligned_cols=110  Identities=11%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..+++.++.++.+ +.+..++...+...+.+. .......+.|..| ++||.+.|+.+..+++|+.+++.+.+.+..
T Consensus       107 ~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~  184 (476)
T PLN00028        107 LLMLTAPAVFCMSLVS-SATGFIAVRFFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFP  184 (476)
T ss_pred             HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555554 443322222221222222 1223345678776 679999999998888888888766655432


Q ss_pred             ----C-cccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          83 ----G-KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        83 ----~-~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                          . .....+||+.|++.+++.++..+...++.++.
T Consensus       185 ~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~  222 (476)
T PLN00028        185 LIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL  222 (476)
T ss_pred             HHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence                1 00124799999999988887776666665443

>TIGR00896 CynX cyanate transporter

Probab=98.18  E-value=3.9e-05  Score=61.16  Aligned_cols=68  Identities=12%  Similarity=0.032  Sum_probs=51.1

Q ss_pred             HhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469          37 GAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST  106 (154)
Q Consensus        37 g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~  106 (154)
                      +...+.......|..|++|+.+.|+.+....+|..++|.+.+.+.+.  ...+|+..|.+.+.+.++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~--~~~~w~~~f~~~~~~~~~~~~  169 (355)
T TIGR00896       102 AIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQH--SGGHWQQALAWWALPALLALL  169 (355)
T ss_pred             HHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH
Confidence            33334455566777788899999999999999999999999998874  112499999887766555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.17  E-value=2.1e-05  Score=63.98  Aligned_cols=81  Identities=20%  Similarity=0.205  Sum_probs=61.0

Q ss_pred             HhhhhhhhhhhcccC-c-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          37 GAVYSGFKVNHLDIS-P-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        37 g~~~~~~~~~~~d~~-p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                      +...+.......+.. | +++|++.|+.+.++++++.++|.+.|++.|.   .++|+..|.+.+.+.+++.+..+++.++
T Consensus       307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI---SGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            333444444555654 4 5699999999999999999999999999995   4679999999988888887776666654


Q ss_pred             Cc-cCCC
Q psy3469         115 DR-QPWD  120 (154)
Q Consensus       115 ~~-q~w~  120 (154)
                      ++ ++|.
T Consensus       384 ~~~~~~~  390 (393)
T PRK09705        384 RFPQLWV  390 (393)
T ss_pred             cccchhc
Confidence            43 3443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.16  E-value=1.1e-05  Score=67.59  Aligned_cols=100  Identities=13%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             ccchhHHHHHHHHhhcCCChhH--------HHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHh
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYL--------TVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLA   73 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~   73 (154)
                      +++++.+++.++.++.+ +...        .+++-.+...+.+...+...+++.|..| ++||...++......+|..++
T Consensus        92 ~~~~l~~i~~~~~a~~~-~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642         92 ITIVIMSISTFCIGLIP-SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            35556666667777765 4321        1222223333344445566778899887 779999999988888888888


Q ss_pred             hhhhhhccc----CcccccchHHHHHHHHHHHHH
Q psy3469          74 PIIAGYVIQ----GKPTQAAWRVVFVAAAVVYLF  103 (154)
Q Consensus        74 P~i~G~i~~----~~~~~~~~~~~F~~~~~~~~i  103 (154)
                      +.+...+..    ..-...+||+.|++.+.+.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        171 AGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            766544321    100136899999987655444

>PRK03699 putative transporter; Provisional

Probab=98.14  E-value=1.3e-05  Score=65.12  Aligned_cols=73  Identities=11%  Similarity=0.172  Sum_probs=56.6

Q ss_pred             HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .+...+...+...+..|++++...|....++.+|..++|.+.|++.+.    .+++..|+..+++++++.+..+.+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        308 SSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAH----FGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH----hCchhhhhhhHHHHHHHHHHHHHHH
Confidence            343445555666777777778889999999999999999999999984    6788999888888877765544443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.14  E-value=1.5e-05  Score=64.38  Aligned_cols=66  Identities=5%  Similarity=-0.087  Sum_probs=49.0

Q ss_pred             HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST  106 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~  106 (154)
                      .+...+...+...|. .++++.+.|..+..+.+|..++|.+.|++.+.    .+|+..|++.+...++..+
T Consensus       108 ~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~----~g~~~~f~~~~~~~~~~~~  173 (382)
T PRK11128        108 FSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW----FGEQAILWILTAGVASMLL  173 (382)
T ss_pred             HcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH----cChhHHHHHHHHHHHHHHH
Confidence            333344444455554 45678888889999999999999999999984    6899999988765555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.11  E-value=3.1e-05  Score=64.19  Aligned_cols=67  Identities=24%  Similarity=0.443  Sum_probs=54.7

Q ss_pred             hhhcccCc-chHHHHHHHHHHHHHHHHhH-hhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          45 VNHLDISP-RFAGILMSFTNCLANLAGLL-APIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        45 ~~~~d~~p-~~~g~~~g~~~~~~~lg~~i-~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      ....|..| +.+|++.|+.++.+++|+.+ +|.+.|++.|.    .+|+..|++++.+.+++.+....+.+.+
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~~~  438 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGGSILAVILLIVVMIGE  438 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45568777 67999999999999998765 79999999985    6799999999998888877766665433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.10  E-value=2.6e-05  Score=71.36  Aligned_cols=84  Identities=11%  Similarity=-0.126  Sum_probs=62.4

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV   99 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~   99 (154)
                      +.+..+++..+...+.++..+...+++.|+.| ++++.++|+.++..++|.+++|.++|++.+.    .+|+..|+....
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~----~~~~~~~~~~~~  182 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS----GNFVILVALLMG  182 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHH
Confidence            44444444444444455556778889999876 7799999999999999999999999999884    789999855545


Q ss_pred             HHHHHHHHH
Q psy3469         100 VYLFSSTFY  108 (154)
Q Consensus       100 ~~~i~~~~~  108 (154)
                      +.+++.++.
T Consensus       183 ~~~~~~~~~  191 (1140)
T PRK06814        183 IAVLGWLAS  191 (1140)
T ss_pred             HHHHHHHHH
Confidence            445444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.07  E-value=3.8e-05  Score=63.23  Aligned_cols=69  Identities=20%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc----ccccchHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK----PTQAAWRVVFVAAAVVYLFS  104 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~----~~~~~~~~~F~~~~~~~~i~  104 (154)
                      .|...+...+++.|..| ++||.+.++.+.....|.++++.+.+.+....    -...+||..|++.+...++.
T Consensus       138 ~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             hhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            34445666788899876 77999999988888888888877655443210    01368999999876655544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.07  E-value=5.4e-06  Score=68.94  Aligned_cols=96  Identities=16%  Similarity=0.050  Sum_probs=67.5

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV   99 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~   99 (154)
                      +.+..+++..+...+.+...+...+.+.|..| ++||.+.|+.+....+|.++++.+..++.+.. -..+|+..|.+.+.
T Consensus       121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~-~~~~~~~~f~~~g~  199 (467)
T PRK09556        121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF-FDGHVIGMFIFPSI  199 (467)
T ss_pred             hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh-ccCcchhHHHHHHH
Confidence            33333443444444455555666778889876 67999999999999999999999987776521 01369999998888


Q ss_pred             HHHHHHHHHHHhccCCcc
Q psy3469         100 VYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus       100 ~~~i~~~~~~~~~~~~~q  117 (154)
                      +.++..++.+++.+++++
T Consensus       200 ~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        200 IALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             HHHHHHHHHHHhCCCChh
Confidence            877766666666655554

>KOG0255|consensus

Probab=98.06  E-value=2e-05  Score=66.40  Aligned_cols=97  Identities=12%  Similarity=0.151  Sum_probs=75.4

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      .++++..++-+..++.+ +.+..+++-.+..++.+......+.+.+|+. |++|+.+..+ ......++.++|.+.+++.
T Consensus       153 ~~~~~~~i~~~~~a~a~-~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~  230 (521)
T KOG0255|consen  153 VSLLLFIIFGILTAFAP-NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT  230 (521)
T ss_pred             HHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            35556666666777765 6665555556655555555677888999965 6899999999 8899999999999999998


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHH
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      .      +||+.+++.....++..+.
T Consensus       231 ~------~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  231 R------DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             h------hHHHHHHHHHHHHHHHHHH
Confidence            6      5999999988888777666

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.05  E-value=1.9e-05  Score=65.30  Aligned_cols=73  Identities=8%  Similarity=-0.018  Sum_probs=53.1

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC--cccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG--KPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~--~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      +..+..++|..| ++||++.|+.+.+++++++++|.+.+.+.+.  .....+|+..|++.+++.+++.+...++.+
T Consensus       383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence            456788999887 6799999999999999999997666554410  001256778888888777777666555544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.04  E-value=0.00012  Score=60.36  Aligned_cols=88  Identities=14%  Similarity=0.087  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc---------------
Q psy3469          22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP---------------   85 (154)
Q Consensus        22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~---------------   85 (154)
                      .+..+....+...+.+...+...+.+.+..| ++++...++.+.+.++|..++|.+.+.+.....               
T Consensus        94 ~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~  173 (410)
T TIGR00885        94 YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE  173 (410)
T ss_pred             HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence            3333333344444455555556667777776 679999999999999999999999998753210               


Q ss_pred             -------cccchHHHHHHHHHHHHHHHHHHH
Q psy3469          86 -------TQAAWRVVFVAAAVVYLFSSTFYI  109 (154)
Q Consensus        86 -------~~~~~~~~F~~~~~~~~i~~~~~~  109 (154)
                             ...+|+..|++.+.+.++..+.+.
T Consensus       174 ~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~  204 (410)
T TIGR00885       174 LSAIKHSDLASVQTPYMIIGAVVLAVALLIM  204 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   124699999988887776655443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.03  E-value=1.1e-05  Score=66.74  Aligned_cols=79  Identities=16%  Similarity=0.295  Sum_probs=56.6

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc----cccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      .+...+...+++.|..| ++||.+.|+.+....+|.++++.+.+.+.....    ...+||+.|++.+...++..+. .+
T Consensus       134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~  212 (479)
T PRK10077        134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LY  212 (479)
T ss_pred             HhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HH
Confidence            44445566778899887 779999999999999999999887766543110    1368999999887777776544 34


Q ss_pred             hccCC
Q psy3469         111 AASGD  115 (154)
Q Consensus       111 ~~~~~  115 (154)
                      +.+++
T Consensus       213 ~l~~s  217 (479)
T PRK10077        213 FVPET  217 (479)
T ss_pred             cCCCC
Confidence            44444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.02  E-value=5.2e-05  Score=61.82  Aligned_cols=70  Identities=14%  Similarity=0.060  Sum_probs=55.0

Q ss_pred             HHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469          33 LGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        33 ~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      ..+.++..+...+.+.|+.| ++|+.+.|+.+....++..++|.++|++.+.     .|+..|.+.+.+.+++.+.
T Consensus        99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-----~~~~~~~i~~~~~~~~~~~  169 (393)
T PRK11195         99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-----HAEAALAVCALIYLLAALF  169 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            33345556777888999887 6799999999999999999999999999883     3778887776665555443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.00  E-value=6.6e-05  Score=59.65  Aligned_cols=91  Identities=15%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc------------cc
Q psy3469          22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT------------QA   88 (154)
Q Consensus        22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~------------~~   88 (154)
                      ....++.+.+...++++..+....++.++.| ++++...++...+..+|..++|.+.+.+......            ..
T Consensus        10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~   89 (310)
T TIGR01272        10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA   89 (310)
T ss_pred             HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence            3344444555555566667788889999876 6799999999999999999999999987742100            14


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          89 AWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        89 ~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      +|+..|++.+.+.++..+.+.+..
T Consensus        90 ~~~~~yl~ia~~~~~~~i~~~~~~  113 (310)
T TIGR01272        90 KVHTPYLLLAGALAVLAIIFAFLP  113 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc
Confidence            689999988887777666555553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.96  E-value=4.2e-05  Score=61.87  Aligned_cols=78  Identities=10%  Similarity=-0.034  Sum_probs=52.8

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +.+..++...+...+.+...+...+...+. +++++...|....++++|.+++|++.|++.+.    .+|+..|++.+.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~----~g~~~~f~~~~~~  167 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANTW-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM----FDEQNILAILTAG  167 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH----cChhHHHHHHHHH
Confidence            444433333323333333344444444433 46789999999999999999999999999984    6899999887655


Q ss_pred             HHH
Q psy3469         101 YLF  103 (154)
Q Consensus       101 ~~i  103 (154)
                      .++
T Consensus       168 ~~~  170 (382)
T TIGR00902       168 LAF  170 (382)
T ss_pred             HHH
Confidence            333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00897 2A0118 polyol permease family

Probab=97.96  E-value=0.00017  Score=58.80  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=44.8

Q ss_pred             hhhhhhcccC-cchHHHHHHHHHHHHHHHH-hHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          42 GFKVNHLDIS-PRFAGILMSFTNCLANLAG-LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        42 ~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~-~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .....+.+.. +++|+.+.|+.+...++|. .++|.+.|++.+.    .+|+..++......+++.++..++.
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  193 (402)
T TIGR00897       125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA----FGEMNTLWSALAFVLTGGVIALFSN  193 (402)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444566655 4889999999999999996 6899999998874    5655555544444334433333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.94  E-value=5.4e-05  Score=65.89  Aligned_cols=86  Identities=13%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhhh----hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc-----------------
Q psy3469          29 LTIGLGFNGAVY----SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT-----------------   86 (154)
Q Consensus        29 l~~~~~~~g~~~----~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~-----------------   86 (154)
                      +.++.++.|+..    +...+++.|..| ++++.+.|+.+....+|..++|.++|++.+...+                 
T Consensus       175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr  254 (633)
T TIGR00805       175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR  254 (633)
T ss_pred             hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence            344455555543    444568888776 7799999999999999999999999988753210                 


Q ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          87 -QAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        87 -~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                       .++|+..|++.+++.++..+.++++.++
T Consensus       255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       255 WIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence             1247888999888888877665554433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09952 shikimate transporter; Provisional

Probab=97.94  E-value=6.1e-05  Score=62.25  Aligned_cols=99  Identities=12%  Similarity=0.096  Sum_probs=61.6

Q ss_pred             cchhHHHHHHHHhhcCCChhH----HHHHHHHHHHHHHh----hhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhh
Q psy3469           4 GQYGPAVCLVAASYTGCDPYL----TVGILTIGLGFNGA----VYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAP   74 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~----~~~~l~~~~~~~g~----~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P   74 (154)
                      ++++.+++.++.++.+ +...    ....+.+..+..|.    ..+...+++.|..| ++||...+..+....+|..+++
T Consensus       100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952        100 TVWMMGIATALIGLLP-SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4455555566666665 4321    11122333333333    33445568889877 7799999999999899999988


Q ss_pred             hhhhhcccCcc----cccchHHHHHHHHHHHHH
Q psy3469          75 IIAGYVIQGKP----TQAAWRVVFVAAAVVYLF  103 (154)
Q Consensus        75 ~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i  103 (154)
                      .+.+.+.....    ...+||..|++.+...++
T Consensus       179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            87776543100    136899999987665443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.94  E-value=0.0001  Score=59.52  Aligned_cols=60  Identities=17%  Similarity=0.177  Sum_probs=46.3

Q ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      +.++.+.  .+...++|.+++|.+.|++.|.   +++|+..|.+++.+.++.......+.+.++|
T Consensus       322 ~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (382)
T PRK10091        322 ELLGAAG--GQIAFNLGSAIGAYCGGMMLTL---GLAYNYVALPAALLSFAAMSSLLLYGRYKRQ  381 (382)
T ss_pred             hHHHHHH--HHHHHHHHHHHHHHHhHHHHHc---ccCcchHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            4455543  4677899999999999999984   4789999999988888777766666665554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.92  E-value=5.3e-05  Score=62.16  Aligned_cols=58  Identities=14%  Similarity=0.198  Sum_probs=47.0

Q ss_pred             hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHH
Q psy3469          42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYL  102 (154)
Q Consensus        42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~  102 (154)
                      ..+....|..| ++||++.|+.+.++++|++++|.+.|.+.+.   .++|+..|++++++.+
T Consensus       353 ~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~---~g~~~~~~~~~~~~~~  411 (412)
T TIGR02332       353 IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDA---TGSFNSGLWFVAALLV  411 (412)
T ss_pred             HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc---CCCCchhHHHHHHHHh
Confidence            34455566555 7899999999999999999999999999985   3569999987766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.89  E-value=8.5e-05  Score=62.41  Aligned_cols=73  Identities=10%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc------ccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT------QAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~------~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      +..+....|+.| +.|+++.|+.+.++.++++++|.+.|++.+..+.      ..++...|++.+++.+++.+.+ ++.+
T Consensus       411 ~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lp  489 (502)
T TIGR00887       411 ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIP  489 (502)
T ss_pred             chhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEec
Confidence            456777889988 6699999999999999999999999999874211      1235667888888888776654 4444


Q ss_pred             C
Q psy3469         114 G  114 (154)
Q Consensus       114 ~  114 (154)
                      +
T Consensus       490 E  490 (502)
T TIGR00887       490 E  490 (502)
T ss_pred             c
Confidence            3

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.89  E-value=6e-05  Score=62.11  Aligned_cols=108  Identities=16%  Similarity=0.155  Sum_probs=81.7

Q ss_pred             hhHHHHHHHHhhcC------CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469           6 YGPAVCLVAASYTG------CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         6 ~~~ai~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~   79 (154)
                      .+++++..++++..      .+....+..+.....+.|...+..+..+..+.|++.|.+.|+...++.+|++.-|...|.
T Consensus       292 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~  371 (417)
T COG2223         292 VGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGV  371 (417)
T ss_pred             HHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHH
Confidence            34455555555442      123344444455555677777888889999999999999999999999999999999999


Q ss_pred             cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      ..+.   +.+|...|++...+.+++.+.......+++
T Consensus       372 ~~~~---tg~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         372 SLDL---TGSYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             HHHh---cccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9985   567999999999999998886666654443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.88  E-value=0.00014  Score=61.45  Aligned_cols=88  Identities=15%  Similarity=0.224  Sum_probs=69.6

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV   99 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~   99 (154)
                      +.+...++-.+...++|..++...++..++.| ++.+...|+++..+...++++|.+.|.+.+.   +++.|+.|.....
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~---tg~~r~g~~~l~~  455 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA---TGSQRYGFLFLLV  455 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhHHHHHHH
Confidence            34433333334444567777888889999887 6789999999999999999999999999995   5778999999999


Q ss_pred             HHHHHHHHHHHh
Q psy3469         100 VYLFSSTFYIFA  111 (154)
Q Consensus       100 ~~~i~~~~~~~~  111 (154)
                      +++++.++....
T Consensus       456 lf~~gl~ll~~v  467 (477)
T PF11700_consen  456 LFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHhhc
Confidence            988888876443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.88  E-value=0.00019  Score=57.88  Aligned_cols=68  Identities=12%  Similarity=0.045  Sum_probs=53.7

Q ss_pred             hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      .+...+...|..| ++++...+..+...++|++++|.+.|++.|.    .+|++.|.+.+.+.+++.+..++.
T Consensus       303 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~----~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        303 YPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN----YSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhc
Confidence            4556666677666 5678888888999999999999999999984    678999999888887766544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.88  E-value=0.00014  Score=57.58  Aligned_cols=68  Identities=22%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc----cccchHHHHHHHHHHHHHHHHH
Q psy3469          40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      .+...+.+.|..| ++|+...++.+....+|.+++|.+.+.+....+    ...+|+..|++.+.+.+++...
T Consensus       114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             ccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            3445667888776 779999999999999999999988776542100    1367999999877666655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.00022  Score=58.78  Aligned_cols=107  Identities=21%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP   85 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~   85 (154)
                      +..++.++.+.+...+.+..+..+.+..+.........+.-..+..|+.++.+.++....-|+|..+|..++|.+.|+  
T Consensus       284 ~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~--  361 (394)
T COG2814         284 LLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA--  361 (394)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            445555566666653444444444443333333333445555566679999999999999999999999999999994  


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          86 TQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        86 ~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                        .+|....++.+.+.+++.+..+...+.++
T Consensus       362 --~g~~~~~~~~a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         362 --LGYAATGWVGAALLLLALLLALLSARKDR  390 (394)
T ss_pred             --hchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              88999999999999999887777665443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.87  E-value=0.00026  Score=57.71  Aligned_cols=76  Identities=20%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             hhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc---ccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469          40 YSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK---PTQAAWRVVFVAAAVVYLFSSTFYIFAASG  114 (154)
Q Consensus        40 ~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~---~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~  114 (154)
                      ..++.+...|+.  +++|+...++.+..+.+|+.+++.+.+.+....   ....+|+..|.+.+++.++..+...++.++
T Consensus       117 ~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e  196 (437)
T TIGR00792       117 NIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKE  196 (437)
T ss_pred             cccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence            345667777865  367999999999999999888877766655311   123679999999988888777665555544


Q ss_pred             C
Q psy3469         115 D  115 (154)
Q Consensus       115 ~  115 (154)
                      +
T Consensus       197 ~  197 (437)
T TIGR00792       197 R  197 (437)
T ss_pred             c
Confidence            3

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.86  E-value=0.00012  Score=60.33  Aligned_cols=60  Identities=18%  Similarity=0.306  Sum_probs=44.5

Q ss_pred             hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc----ccccchHHHHHHHHH
Q psy3469          40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK----PTQAAWRVVFVAAAV   99 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~----~~~~~~~~~F~~~~~   99 (154)
                      .+....++.|..| ++||.+.++.+...++|..++|.+.+.+....    ....+||+.|++...
T Consensus       135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            4455678889887 77999999999999998888888877663210    013689999987543

>KOG2504|consensus

Probab=97.85  E-value=5.4e-05  Score=64.34  Aligned_cols=106  Identities=11%  Similarity=0.039  Sum_probs=81.1

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHH-HHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIG-LGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +|.++.++++++..+.+ +.+..++...+. ..+.++.+....+.+..+.+++|+.++|+......+|.++-|.+.-++.
T Consensus       116 ~G~~v~~~g~~lssF~~-~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  116 AGGLVAALGLLLSSFAT-SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence            46667777788888775 655444433333 3335665666666777788899999999999999999999999999999


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      +.    .+|++.+++.+.+.+-..+.....++
T Consensus       195 ~~----~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  195 SK----YGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HH----hCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            94    88999999999998777776666655

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.85  E-value=5.5e-05  Score=62.38  Aligned_cols=68  Identities=24%  Similarity=0.454  Sum_probs=56.5

Q ss_pred             hhhcccCc-chHHHHHHHHHHHHHHHH-hHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          45 VNHLDISP-RFAGILMSFTNCLANLAG-LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        45 ~~~~d~~p-~~~g~~~g~~~~~~~lg~-~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      ....|..| +.+|++.|+.+.++++++ +++|.+.|++.|.    .+|+.+|++++++.+++.+..+++.++|+
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34567777 679999999999999875 6899999999984    57999999999988888888877776653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.82  E-value=0.00033  Score=59.20  Aligned_cols=88  Identities=11%  Similarity=0.063  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCc-ch--HHHHHHHHHHHHHHHHhHhhhhhhhcc--cC---ccc------ccchHHHH
Q psy3469          29 LTIGLGFNGAVYSGFKVNHLDISP-RF--AGILMSFTNCLANLAGLLAPIIAGYVI--QG---KPT------QAAWRVVF   94 (154)
Q Consensus        29 l~~~~~~~g~~~~~~~~~~~d~~p-~~--~g~~~g~~~~~~~lg~~i~P~i~G~i~--~~---~~~------~~~~~~~F   94 (154)
                      +.+..+......++..+++.|+.| ++  ++.+.++.+...++|+.+++.+.|+..  +.   .++      ..+++..|
T Consensus       121 ~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F  200 (477)
T TIGR01301       121 FWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCF  200 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHH
Confidence            333344555566788899999887 33  378999999999999999999998752  10   000      13789999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCc
Q psy3469          95 VAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        95 ~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      ++.+++++++.+...+..++++
T Consensus       201 ~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       201 LIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHHHeeeeeccC
Confidence            9998888888887777776653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.82  E-value=0.00029  Score=59.54  Aligned_cols=106  Identities=9%  Similarity=0.088  Sum_probs=66.4

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +++.-+++.++.++.. +.....+.-.+...+.+... ..+.++....| ++|++++|+.+....+|.+++|++.+++..
T Consensus        98 ~~l~Wsl~t~L~~fa~-Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s  175 (511)
T TIGR00806        98 QALSFVCVWLLLLLGT-SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT  175 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445555555543 33322333333333344444 66667777776 789999999999999999999999999543


Q ss_pred             CcccccchHH---HHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          83 GKPTQAAWRV---VFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        83 ~~~~~~~~~~---~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                           .+|+.   ..++..+...++.+..+++-+.++
T Consensus       176 -----~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       176 -----LGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             -----cCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence                 34554   556666666666666655544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.80  E-value=0.00028  Score=64.45  Aligned_cols=62  Identities=5%  Similarity=-0.089  Sum_probs=47.3

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..+++..+...+.++..+...+++.|+.| ++|+.+.|+.+....+|.+++|.++|++.+
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33433444444444455555677789999876 779999999999999999999999999976

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.78  E-value=0.00028  Score=61.08  Aligned_cols=101  Identities=11%  Similarity=0.128  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      ++..+..++.+..+ +....+...++.....|.. ......++|+.| +.|+...++.....-.....+|.+...+..  
T Consensus       116 ~l~vvG~Iv~atA~-~~~~~iag~~l~GvgaG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~--  191 (599)
T PF06609_consen  116 LLGVVGSIVCATAQ-NMNTFIAGMVLYGVGAGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA--  191 (599)
T ss_pred             HHHHhHHHHhhcCC-cHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc--
Confidence            34444444455443 4433444444443333332 234556889888 679888877766555555567777766654  


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          85 PTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                        +.+|||.|++.++...++.+...++-
T Consensus       192 --~~~WRw~~~~~~i~~~i~~vl~~~fY  217 (599)
T PF06609_consen  192 --HSGWRWIFYIFIIWSGIALVLIFFFY  217 (599)
T ss_pred             --CCCcchHHHHHHHHHHHHHHHHHHHh
Confidence              37899999999998888876665554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.78  E-value=0.00034  Score=58.70  Aligned_cols=106  Identities=15%  Similarity=0.085  Sum_probs=76.6

Q ss_pred             ccchhHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHh
Q psy3469           3 LGQYGPAVCLVAASYT--------GCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLA   73 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~   73 (154)
                      +|+++.++++..+.+.        +.+.++.+....+....-.+..+..++...+..| +.||...|+......+|..++
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~  433 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLG  433 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777666666531        1244444444444444445556788889999998 569999999999999999999


Q ss_pred             hhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          74 PIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        74 P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      +.+.....+.    .+|...|...+.+.++..++++++.
T Consensus       434 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       434 GYLATFGAVP----QGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHhcc----cchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9998877663    5688888888888887777665544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.76  E-value=0.00015  Score=59.00  Aligned_cols=43  Identities=16%  Similarity=0.120  Sum_probs=37.4

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      +..+..+.|..| +++|++.|+.+..+.+++.++|.+.|++.+.
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            345567788887 6799999999999999999999999999884

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.75  E-value=0.00039  Score=56.24  Aligned_cols=99  Identities=9%  Similarity=-0.105  Sum_probs=65.3

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHH-HHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNC-LANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~-~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..++.....++.+ +.+..+....+-....+...+.....+.+..++++++..++++. ...+|..++|.+.|++.|
T Consensus       276 ~~~~~~~~~~~~~~~~-~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       276 SAIACVGRWAIIGAIE-AFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555666554 54433333333333345545555667777733678999999874 567999999999999999


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFY  108 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~  108 (154)
                      .    .++ ..|..++.+.+++.++.
T Consensus       355 ~----~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       355 T----LGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             h----ccH-HHHHHHHHHHHHHHHHH
Confidence            5    454 67888888887765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.73  E-value=0.00037  Score=57.27  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=60.2

Q ss_pred             HHhhhhhhhhhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc--c-cchHHHHHHHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT--Q-AAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~--~-~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      ..+...++.+...|+.+  ++|....+..+.+..+|.++...+.+.+.+..+.  . .+|+..+.+.+++.+++.++..+
T Consensus       117 ~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~  196 (428)
T PF13347_consen  117 YTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFF  196 (428)
T ss_pred             hhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhh
Confidence            34444567788899875  5699999999999999998777777777653221  1 27999999999998888887777


Q ss_pred             hccC
Q psy3469         111 AASG  114 (154)
Q Consensus       111 ~~~~  114 (154)
                      ..++
T Consensus       197 ~~ke  200 (428)
T PF13347_consen  197 FVKE  200 (428)
T ss_pred             eeee
Confidence            7666

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.73  E-value=0.00098  Score=53.79  Aligned_cols=79  Identities=9%  Similarity=-0.068  Sum_probs=49.3

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..++......+.+ +.+..++...+.....+...+...+...|..| ++|+.+.|..+...++|..++|.+.+.+.+
T Consensus        77 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633         77 ASLIFAAGCAGLGLMV-GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3344444445555544 54433333333333333333434445556554 779999999999999999999999999977


Q ss_pred             C
Q psy3469          83 G   83 (154)
Q Consensus        83 ~   83 (154)
                      .
T Consensus       156 ~  156 (381)
T PRK03633        156 E  156 (381)
T ss_pred             c
Confidence            3

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.73  E-value=0.00033  Score=57.63  Aligned_cols=76  Identities=12%  Similarity=0.023  Sum_probs=53.4

Q ss_pred             HHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHH
Q psy3469          32 GLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYI  109 (154)
Q Consensus        32 ~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~  109 (154)
                      ..++.+...+..+...+|..| +.|+++.|+.+.++++ .+...|.+.+.+.+    ++.|...|++.+.+.+++.+..+
T Consensus       346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~----~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS----IGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHHHH
Confidence            334444444556778899887 6799999999988875 35558888886633    24577777777777777766655


Q ss_pred             Hh
Q psy3469         110 FA  111 (154)
Q Consensus       110 ~~  111 (154)
                      ++
T Consensus       422 ~l  423 (432)
T PRK10406        422 ML  423 (432)
T ss_pred             Hh
Confidence            54

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.71  E-value=0.00033  Score=59.80  Aligned_cols=84  Identities=13%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      .+..+++..+..++..+..+...+.+.|+.| ++...+.++.+...+++.++||.++|.++..    .|....|.+.+..
T Consensus       103 ~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~----~G~~~~f~inals  178 (524)
T PF05977_consen  103 PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF----FGAAAAFLINALS  178 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH----HHHHHHHHHHHHH
Confidence            3433333333344455556778889999887 6789999999999999999999999999884    6778889988877


Q ss_pred             HHHHHHHHH
Q psy3469         101 YLFSSTFYI  109 (154)
Q Consensus       101 ~~i~~~~~~  109 (154)
                      .++..+...
T Consensus       179 fl~~i~~l~  187 (524)
T PF05977_consen  179 FLISILALL  187 (524)
T ss_pred             HHHHHHHHH
Confidence            776655443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.71  E-value=0.00014  Score=59.91  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccc---hHHHHHHHHHH
Q psy3469          25 TVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAA---WRVVFVAAAVV  100 (154)
Q Consensus        25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~---~~~~F~~~~~~  100 (154)
                      .++.+.+..+..|..++...+.+...+| ++.|++.|+.. ++|+|..+.-.+.-.+...    .+   |+.+..+-...
T Consensus       107 ~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~----~g~~~w~~~~~i~~~~  181 (417)
T COG2223         107 QLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA----FGFLAWRNVAGIYVVA  181 (417)
T ss_pred             HHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence            4445555555556666666777888777 67999999999 9999888777766666653    44   99999999999


Q ss_pred             HHHHHHHHHHhccCCccCCCCCCC
Q psy3469         101 YLFSSTFYIFAASGDRQPWDNPNN  124 (154)
Q Consensus       101 ~~i~~~~~~~~~~~~~q~w~~~~~  124 (154)
                      +++..+.+++..++.++....+++
T Consensus       182 l~v~~v~~~~~~~d~p~~r~~~~~  205 (417)
T COG2223         182 LAIAAVLAWLGMNDVPEHRASVKP  205 (417)
T ss_pred             HHHHHHHHHHHhCCChhhhccccc
Confidence            999888888888888775343333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.66  E-value=0.00058  Score=55.69  Aligned_cols=79  Identities=14%  Similarity=0.066  Sum_probs=52.0

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccC--------cchHHHHHHHHHHHHHHHHhHhhhh
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDIS--------PRFAGILMSFTNCLANLAGLLAPII   76 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~--------p~~~g~~~g~~~~~~~lg~~i~P~i   76 (154)
                      +++.++..+.+.+.+.+.+..+++..+..+..+...+..++.++|..        ++++|.+.|+.+++..+|..++|.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i  373 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL  373 (437)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444443313333344444444455555667788888764        3458999999999999999999999


Q ss_pred             hhhcccC
Q psy3469          77 AGYVIQG   83 (154)
Q Consensus        77 ~G~i~~~   83 (154)
                      .|++.+.
T Consensus       374 ~g~ll~~  380 (437)
T TIGR00792       374 VGLILGI  380 (437)
T ss_pred             HHHHHHH
Confidence            9999764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.62  E-value=0.00021  Score=57.08  Aligned_cols=55  Identities=24%  Similarity=0.300  Sum_probs=45.1

Q ss_pred             hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHH
Q psy3469          40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAA   97 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~   97 (154)
                      .+..+..++|..| +++|++.|+.+.+.++++.++|.+.|++.|.   .++|+..|...
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~---~g~~~~~~~~~  401 (405)
T TIGR00891       346 WGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR---LDEYGTALASL  401 (405)
T ss_pred             hhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh---ccccchhHHhh
Confidence            4556678888877 6799999999999999999999999999995   23377766653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.60  E-value=0.00039  Score=56.36  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=48.2

Q ss_pred             hhhcccCc-chHHHHHHH-HHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          45 VNHLDISP-RFAGILMSF-TNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        45 ~~~~d~~p-~~~g~~~g~-~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      ....+..| +.+++..+. .++...+|++++|.+.|++.|.    .+|+..|.+.+++.++..+...+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~----~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS----IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh----cccHHHHHHHHHHHHHHHHHHHH
Confidence            34455444 556776666 6789999999999999999994    67999999999888877765543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.59  E-value=0.00044  Score=63.45  Aligned_cols=82  Identities=10%  Similarity=-0.060  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      .+..++...+...+.++......+.+++..| +++|++.|+.+++..++..+++++.|.+.+.   ..++...|++++.+
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~---~~~~~~~~~~~~~~  410 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL---GFSIPWIILFIALA  410 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh---ccCHHHHHHHHHHH
Confidence            3333333333344445555667888899877 6799999999999999999999999999753   25667777666655


Q ss_pred             HHHHHH
Q psy3469         101 YLFSST  106 (154)
Q Consensus       101 ~~i~~~  106 (154)
                      .++..+
T Consensus       411 ~~~~~~  416 (1140)
T PRK06814        411 NLIVAI  416 (1140)
T ss_pred             HHHHHH
Confidence            444443

>PRK10504 putative transporter; Provisional

Probab=97.59  E-value=0.00077  Score=55.78  Aligned_cols=50  Identities=20%  Similarity=0.185  Sum_probs=39.8

Q ss_pred             HHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          34 GFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        34 ~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+.+...+.......+..| +.+|.+.|+.++...+|..++|.+.|.+.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445566667777666 6799999999999999999999999998764

>KOG2615|consensus

Probab=97.59  E-value=0.00012  Score=60.04  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGI-LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYV   80 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i   80 (154)
                      +|.++.++.+.+.+... +. .+.++ -.+...+.| +.+...++++|+.+ ++|+.+++.++...++|-++||.|+|++
T Consensus       103 ~c~~~va~s~ll~~~S~-~F-~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl  179 (451)
T KOG2615|consen  103 ACLIGVALSYLLWALSR-NF-AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL  179 (451)
T ss_pred             HHHHHHHHHHHHHHHHH-HH-HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence            45556666666665543 33 22222 223333333 35778899999875 7899999999999999999999999999


Q ss_pred             cc
Q psy3469          81 IQ   82 (154)
Q Consensus        81 ~~   82 (154)
                      ..
T Consensus       180 a~  181 (451)
T KOG2615|consen  180 AQ  181 (451)
T ss_pred             Hh
Confidence            87

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.57  E-value=0.00061  Score=62.27  Aligned_cols=100  Identities=16%  Similarity=0.067  Sum_probs=63.4

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      ++++.+++++++.+.. +.+..++.+.+..++.++..+..++.+++..| +.+|++.|+.+++.+++.++++.+.+.+..
T Consensus       305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        305 GALGLALSLFLLPTAP-SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555443 44433343343444445555667788888877 679999999999999999988888777654


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      .   ..++...|++.+.+.++..+.
T Consensus       384 ~---~~~~~~~~~~~~~~~~~~~~~  405 (1146)
T PRK08633        384 L---GLSPAGLFYLIALVTLIGTLY  405 (1146)
T ss_pred             h---ccCHHHHHHHHHHHHHHHHHH
Confidence            2   244556676666655544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.57  E-value=0.0013  Score=53.55  Aligned_cols=70  Identities=14%  Similarity=0.311  Sum_probs=48.1

Q ss_pred             HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469          35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY  108 (154)
Q Consensus        35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~  108 (154)
                      +.++..+..++..+.+.+ +..++..++.+....+++++++.+.|.+.|.    .||+..|...+.+.+++.+..
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~----~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        316 CGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEA----YGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433 2245556777777788888778899999985    789999999888888876654

>PRK11043 putative transporter; Provisional

Probab=97.57  E-value=0.0015  Score=52.92  Aligned_cols=51  Identities=24%  Similarity=0.266  Sum_probs=40.3

Q ss_pred             HHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          33 LGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        33 ~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      ....+...+...+...+..|+++|++.|+.++.+..++..++.+.|.+.+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        307 AAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            333444455555566676788899999999999999999999999999873

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.56  E-value=0.0012  Score=53.86  Aligned_cols=68  Identities=15%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             HHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469          35 FNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST  106 (154)
Q Consensus        35 ~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~  106 (154)
                      +.+...+...+.+++..|++.+.+.+......++|..+||.+.|++.|.    .+++..|+.++.+.++..+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~----~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        318 TFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDN----IGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cChhhHHHHHHHHHHHHHH
Confidence            3444445555567776787788888888889999999999999999984    6788888887776655544

>KOG0253|consensus

Probab=97.55  E-value=0.00016  Score=59.49  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      .+++..+++++.+.... +......++..+-++....+...|.+..|++| .-|++..|..+..+.+|+++.|.|. ...
T Consensus       416 l~l~~f~iflfll~~c~-~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~  493 (528)
T KOG0253|consen  416 LSLILFGIFLFLLTTCK-TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA  493 (528)
T ss_pred             HHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh
Confidence            35566666666655433 44444556666777767778889999999999 5699999999999999999999998 333


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      +.    +..-.+|+. +.+.+++.+...++
T Consensus       494 e~----s~sl~i~vy-~~~~ilagIavcff  518 (528)
T KOG0253|consen  494 EL----STSLPIFVY-GALFILAGIAVCFF  518 (528)
T ss_pred             cc----ceeehHHHH-HHHHHHHHHHheee
Confidence            31    333344544 44444454444444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.55  E-value=0.00086  Score=54.21  Aligned_cols=70  Identities=17%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             HHHHhhhhhhhhhhccc-Cc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469          34 GFNGAVYSGFKVNHLDI-SP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        34 ~~~g~~~~~~~~~~~d~-~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      .+.+...+..++..++. .| +++|+..++.++..++|..++|.+.|++.|.    .+|+..|...+.+.+++.+.
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~----~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR----FGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHHH
Confidence            33455556666666665 44 6799999999999999999999999999984    67999999888777776543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.54  E-value=0.0022  Score=52.05  Aligned_cols=44  Identities=16%  Similarity=0.007  Sum_probs=35.2

Q ss_pred             hhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          40 YSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        40 ~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+.......+..|+++|++.++.+....++..++|.+.|.+.+.
T Consensus       327 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        327 NAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             hhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            33334444445567899999999999999999999999999884

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.54  E-value=0.001  Score=54.88  Aligned_cols=73  Identities=18%  Similarity=0.310  Sum_probs=56.5

Q ss_pred             hhhhhcccCc-chHHHHHHHHHHHH-HHHHhHhhhhhhhcccCccc--ccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          43 FKVNHLDISP-RFAGILMSFTNCLA-NLAGLLAPIIAGYVIQGKPT--QAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        43 ~~~~~~d~~p-~~~g~~~g~~~~~~-~lg~~i~P~i~G~i~~~~~~--~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      ...++.+..| +.++++.|+++... .+|+.++..+.|++.|..+.  ...|...|.+.+++.++..+++.++.|++
T Consensus       322 ~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  322 SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            3456667777 56999999998864 79999999999999986432  23466788888888888888888776554

>PRK12382 putative transporter; Provisional

Probab=97.53  E-value=0.0011  Score=53.57  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=44.3

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +...+.+.|..| ++|+.+.|+.+....++..++|.+.+++.+.    .+|+..+.+....
T Consensus       131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~----~g~~~~~~~~~~~  187 (392)
T PRK12382        131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH----FGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc----cChHHHHHHHHHH
Confidence            344456678765 7899999999999999999999999998874    6798877755443

>TIGR01272 gluP glucose/galactose transporter

Probab=97.52  E-value=0.00077  Score=53.55  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHH
Q psy3469          27 GILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAA   98 (154)
Q Consensus        27 ~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~   98 (154)
                      ..+.+..++.+..+|...+...+..|++.+.+.++. ..+.+|+++.|.+.|.+.|.    .+.+..|++..
T Consensus       235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~----~g~~~a~~v~~  301 (310)
T TIGR01272       235 WFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADC----LGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHh----ccchHHHHHHH
Confidence            334444455666678878888887787778888875 67889999999999999995    56777776443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10133 L-fucose transporter; Provisional

Probab=97.52  E-value=0.0027  Score=52.75  Aligned_cols=61  Identities=11%  Similarity=0.074  Sum_probs=42.2

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcch-HHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRF-AGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~-~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +.+..+....+...+.+.......+.+.|..|++ ++...++.+.+..+|..++|.+++.+.
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444445555566667777877754 556799999999999999999987654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.51  E-value=0.0015  Score=52.72  Aligned_cols=98  Identities=13%  Similarity=-0.056  Sum_probs=59.4

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHH-HHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCL-ANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~-~~lg~~i~P~i~G~i~~   82 (154)
                      +++..++.++.+.+.+ +.+..++...+.....+...+.......+..+++++...++.+.. ..+|..++|.+.|.+.|
T Consensus       276 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        276 SAICGVVRWGLMGSTT-ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555544 554433333333333444444455555566667788899988744 46677999999999998


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      .    .++ ..|+..+++.+++.++
T Consensus       355 ~----~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        355 H----LGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             h----ccH-HHHHHHHHHHHHHHHH
Confidence            5    445 5677666666655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.51  E-value=0.00043  Score=54.35  Aligned_cols=78  Identities=14%  Similarity=0.007  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      ...+++++.+.+.+.+.+..++...+..++.+...+...+...|..| ++||++.|+.++..+++..++|.+.|++.|.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       285 FVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555443113333333333344445555667788889876 6799999999999999999999999999873

>PRK09669 putative symporter YagG; Provisional

Probab=97.51  E-value=0.00096  Score=55.09  Aligned_cols=76  Identities=16%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             hhhhhhhhhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc---ccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          38 AVYSGFKVNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK---PTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        38 ~~~~~~~~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~---~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      ....++.+...|+.+  ++|....++....+.+|+.+++.+...+....   +...+|+..+.+.+++.++..+...+..
T Consensus       125 ~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~  204 (444)
T PRK09669        125 AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMT  204 (444)
T ss_pred             hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence            334456678888753  67999999999999998888876554443211   1135788888888877777665444443


Q ss_pred             c
Q psy3469         113 S  113 (154)
Q Consensus       113 ~  113 (154)
                      +
T Consensus       205 ~  205 (444)
T PRK09669        205 K  205 (444)
T ss_pred             E
Confidence            3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.50  E-value=0.00074  Score=54.56  Aligned_cols=61  Identities=8%  Similarity=-0.020  Sum_probs=47.6

Q ss_pred             hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469          40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS  104 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~  104 (154)
                      .+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+++.+.    .+|+..|++.+.+.++.
T Consensus       130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW----GGLAGLGLLIMLLALLG  191 (399)
T ss_pred             cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHH
Confidence            3444456678665 7799999999999999999999999999874    67999888766554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.50  E-value=0.00021  Score=58.45  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      +++|...|..+..+++|..++|.+.|++.+     .+|+..|++.+++.++..+.+++..++++
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  195 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-----INPQINFWLGSGSALILLVLLFFAKPDAP  195 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHh-----cCchHhHHHHHHHHHHHHHHHhccccccc
Confidence            456778899999999999999999999977     46899999988887777666655554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.48  E-value=0.0026  Score=51.30  Aligned_cols=57  Identities=16%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          26 VGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .....+..+..++..+...+...|..|+++|++.++.+....+|+.++|.+.|.+.+
T Consensus       303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        303 LVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            333344444455566777778888889899999999999999999999999999876

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.48  E-value=0.0012  Score=53.92  Aligned_cols=87  Identities=16%  Similarity=0.070  Sum_probs=57.7

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcch--HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRF--AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAA   98 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~--~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~   98 (154)
                      +.+..+..+.+...+.++..+...+.+++..|++  +|.+.|+.+..++++..++..+.+.+..     .+-+..+++.+
T Consensus       292 ~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  366 (393)
T PRK11195        292 SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK-----LGVPVVAVIVG  366 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHH
Confidence            4443333333344445555566777888887753  6999999999999999999999997754     34555566555


Q ss_pred             HHHHHHHHHHHHhc
Q psy3469          99 VVYLFSSTFYIFAA  112 (154)
Q Consensus        99 ~~~~i~~~~~~~~~  112 (154)
                      ...+++....+.++
T Consensus       367 ~~~~~~~~~~~~~~  380 (393)
T PRK11195        367 FGLLVALAMALLWR  380 (393)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555444443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.45  E-value=0.00085  Score=56.50  Aligned_cols=77  Identities=9%  Similarity=0.043  Sum_probs=61.1

Q ss_pred             HHHHHhhhhhhhhhhcccCcc----------------------hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccch
Q psy3469          33 LGFNGAVYSGFKVNHLDISPR----------------------FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAW   90 (154)
Q Consensus        33 ~~~~g~~~~~~~~~~~d~~p~----------------------~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~   90 (154)
                      ..+.|...+..+..+.++.|+                      +.|.+.|+.+..+.+|+++-|.+.|...+.   +++|
T Consensus       356 ~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~---~g~~  432 (462)
T PRK15034        356 FLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNM---TGSP  432 (462)
T ss_pred             HHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHH---cCCc
Confidence            344566566667677666653                      689999999999999999999999999874   5779


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q psy3469          91 RVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        91 ~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      ...|+......+++.++-+.+-
T Consensus       433 ~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        433 VGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888876665553

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.43  E-value=0.00052  Score=55.61  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          55 AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        55 ~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      ++...|....++++|..++|.+.|.+.+     .+|+..|++.+.+.++..++.+...
T Consensus       131 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~-----~~~~~~f~~~~~~~~~~~~~~~~~~  183 (396)
T TIGR00882       131 SNFEYGKARMFGCVGWALCASIAGILFS-----IDPQIVFWLGSGFALILMLLLMFAK  183 (396)
T ss_pred             cccccchhhhhcccHHHHHHHHHhhhhc-----cCchHHHHHHHHHHHHHHHHHHHhC
Confidence            4557788889999999999999998866     4799999998888877766554433

>TIGR00895 2A0115 benzoate transport

Probab=97.42  E-value=0.00081  Score=53.45  Aligned_cols=61  Identities=21%  Similarity=0.297  Sum_probs=46.6

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +.+..+....+...+.+...+..++.++|..| ++||++.|+.+.+..+|.+++|.+.|++.
T Consensus       337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll  398 (398)
T TIGR00895       337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL  398 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence            44433444444444455566778889999887 67999999999999999999999999863

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.40  E-value=0.0022  Score=54.03  Aligned_cols=78  Identities=14%  Similarity=0.030  Sum_probs=51.4

Q ss_pred             HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc-----cC---------cccccchHHHHHHHHHHH
Q psy3469          37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI-----QG---------KPTQAAWRVVFVAAAVVY  101 (154)
Q Consensus        37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~-----~~---------~~~~~~~~~~F~~~~~~~  101 (154)
                      +..++.....+....| +++|++.|+....+++|..+++.+...+.     +.         .+...+|+.++++...+.
T Consensus       142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~  221 (462)
T PRK15034        142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL  221 (462)
T ss_pred             HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            4556667778888777 66999999997777777665544443322     10         011345888888888888


Q ss_pred             HHHHHHHHHhccC
Q psy3469         102 LFSSTFYIFAASG  114 (154)
Q Consensus       102 ~i~~~~~~~~~~~  114 (154)
                      ++..+.++++.++
T Consensus       222 iv~~i~~~~~~~~  234 (462)
T PRK15034        222 AIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHhCCC
Confidence            7777766666444

>PRK11462 putative transporter; Provisional

Probab=97.38  E-value=0.0021  Score=53.69  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             HHHHHhhhhhhhhhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc---cccchHHHHHHHHHHHHHHHHH
Q psy3469          33 LGFNGAVYSGFKVNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP---TQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        33 ~~~~g~~~~~~~~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~---~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      ..+..+..-++++...++.+  ++|....++....+.+|+++++.+...+....+   ...+|.....+.+.+.+++.++
T Consensus       120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            33344445578888888765  679999999999999998888777655443211   1245777777777766666554


Q ss_pred             HHHh
Q psy3469         108 YIFA  111 (154)
Q Consensus       108 ~~~~  111 (154)
                      ..+.
T Consensus       200 ~~~~  203 (460)
T PRK11462        200 CFFT  203 (460)
T ss_pred             HHhc
Confidence            4333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.38  E-value=0.00045  Score=54.75  Aligned_cols=78  Identities=17%  Similarity=0.082  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHH-HHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          23 YLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFT-NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        23 ~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~-~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +..+....+..++.+...+..++.++|..| ++|+++.|+. +....+|..++|.+.|++.+.   ...|+..++.....
T Consensus       313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~~~~~~~~~  389 (394)
T TIGR00883       313 TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM---TGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH---cCcchhHHHHHHHH
Confidence            333333334444455556778889999887 5699999985 455567889999999999985   23377777766655


Q ss_pred             HHH
Q psy3469         101 YLF  103 (154)
Q Consensus       101 ~~i  103 (154)
                      .++
T Consensus       390 ~l~  392 (394)
T TIGR00883       390 ALI  392 (394)
T ss_pred             HHH
Confidence            443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0252|consensus

Probab=97.34  E-value=0.00029  Score=59.13  Aligned_cols=112  Identities=13%  Similarity=0.101  Sum_probs=77.5

Q ss_pred             cchhHHHHHHHHhhcCCCh---hHHHHHHHHHHHHHHhh-hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhh
Q psy3469           4 GQYGPAVCLVAASYTGCDP---YLTVGILTIGLGFNGAV-YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAG   78 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~-~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G   78 (154)
                      |++++.++.+.++...++.   .-.+++..+..++..+. .+......+|..| +.||+..|+.-.++.+|++++...-+
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            6677777777776654211   11222233333332221 1234457788899 77999999999999999999999999


Q ss_pred             hcccC-cccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          79 YVIQG-KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        79 ~i~~~-~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      ++.++ +...-+.+++|++.+++++++.++.+++-..+
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence            99883 12236789999999999999999877766333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.33  E-value=0.002  Score=52.10  Aligned_cols=64  Identities=11%  Similarity=-0.115  Sum_probs=47.6

Q ss_pred             hhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          46 NHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        46 ~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      ...|..+ +.++...+.......+|.++++.+.+++.+.    .+|+..|++.+++.++..+..+++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~----~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK----FGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4444444 4467777777777788999999888898884    78999999999888877666544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.28  E-value=0.00055  Score=53.95  Aligned_cols=50  Identities=30%  Similarity=0.528  Sum_probs=41.6

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHH
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVF   94 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F   94 (154)
                      ...+....|..| ++||++.|+.+.+..+|+.++|.+.|++.+.    .+|+..|
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----~g~~~~f  379 (379)
T TIGR00881       329 MLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG----FGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh----hcccccC
Confidence            344567788776 6799999999999999999999999999984    6677654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.25  E-value=0.0032  Score=51.01  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCc----chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHH
Q psy3469          26 VGILTIGLGFNGAVYSGFKVNHLDISP----RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVY  101 (154)
Q Consensus        26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p----~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~  101 (154)
                      .+.+.+...+.|..-+...+...|..+    +++.....+...+-++|.++++.+.+++.+.    .+|...|.++++.+
T Consensus        37 ~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~----~~~~~~f~i~~~~~  112 (372)
T PF00854_consen   37 YIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN----YGWFLGFGIPAIGM  112 (372)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC----S-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc----cchhhhhhHHHHHH
Confidence            333444444456667778888888543    3478888899999999999999999999974    88999999999999


Q ss_pred             HHHHHHHHHhc
Q psy3469         102 LFSSTFYIFAA  112 (154)
Q Consensus       102 ~i~~~~~~~~~  112 (154)
                      +++.+.++.-.
T Consensus       113 ~~~~~~f~~~~  123 (372)
T PF00854_consen  113 LLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHHhCC
Confidence            99988665443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK09848 glucuronide transporter; Provisional

Probab=97.20  E-value=0.0019  Score=53.31  Aligned_cols=51  Identities=12%  Similarity=0.115  Sum_probs=39.0

Q ss_pred             HHHHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          32 GLGFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        32 ~~~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .....+...+..++..+|..|        ++.|...|+.++...+|..+++.+.|.+.+
T Consensus       329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333345555667777777654        235999999999999999999999998764

>PRK15075 citrate-proton symporter; Provisional

Probab=97.16  E-value=0.0026  Score=52.41  Aligned_cols=49  Identities=20%  Similarity=0.301  Sum_probs=37.6

Q ss_pred             HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhcccC
Q psy3469          35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQG   83 (154)
Q Consensus        35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~~   83 (154)
                      +.+...+..+..++|..| +.||++.|+.+.++.. ++.++|.+.|++.+.
T Consensus       344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            344444556678889887 6699999997666655 688999999999985

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.14  E-value=0.0018  Score=54.06  Aligned_cols=49  Identities=14%  Similarity=0.057  Sum_probs=37.7

Q ss_pred             HHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          34 GFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        34 ~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      ...+...+..+++++|..+        +..|...|..+++..++..+++.+.|++.+
T Consensus       336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445667778888643        235779999999999999999999999875

>TIGR00788 fbt folate/biopterin transporter

Probab=97.11  E-value=0.0026  Score=53.38  Aligned_cols=50  Identities=8%  Similarity=0.159  Sum_probs=41.3

Q ss_pred             HHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          34 GFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        34 ~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      ...++........+++.+| ++.|+.+|+.+++.++|+.+++.++|++.+.
T Consensus       363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566778888887 6699999999999999999999999999875

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3762|consensus

Probab=97.09  E-value=0.0064  Score=52.13  Aligned_cols=104  Identities=15%  Similarity=0.238  Sum_probs=74.6

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHH-HHHHhHhhhhhhhc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLA-NLAGLLAPIIAGYV   80 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~-~lg~~i~P~i~G~i   80 (154)
                      +|+.+..+=++..++.. ++|+.+-.=.+-....+......-+++.+..| +-+.++.|+..... .+|-.+|.+|+|.+
T Consensus       441 lgLa~~~~Rf~~~S~L~-n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~  519 (618)
T KOG3762|consen  441 LGLACNVGRFLYYSYLQ-NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV  519 (618)
T ss_pred             ehhhHHHHHHHHHHHhc-CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence            34455555566667765 77776655555555555555556667778776 56999999877655 78999999999999


Q ss_pred             ccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      ..+    .+-+..|...++.+++..+.+...
T Consensus       520 v~~----fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  520 VER----FGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             hee----ehhHHHHHHHHHHHHHHHHHHHHh
Confidence            985    666788888888877776666554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.0034  Score=51.36  Aligned_cols=74  Identities=19%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             HHhhhhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          36 NGAVYSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .|..++..-+.+.+..  |+..+...|+.+.++++=..++|++.|++.|.   +++|+..+...+.+.++..++-+...
T Consensus       310 ~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa---~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         310 QGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA---TGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             cchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh---cCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            3555666666777754  57799999999999999999999999999995   68999998888777766666554444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.09  E-value=0.00054  Score=57.79  Aligned_cols=110  Identities=17%  Similarity=0.146  Sum_probs=77.3

Q ss_pred             cchhHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469           4 GQYGPAVCLVAASYTG-CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~   79 (154)
                      |-++.++..+++...+ .+.....+.+.+-..+.|+.-+...+.+.|..| +  +|-...++.....++|++++|++.++
T Consensus        98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~  177 (498)
T COG3104          98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL  177 (498)
T ss_pred             HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHH
Confidence            4455566666666542 122222222332234456666777788888654 2  37778888889999999999999999


Q ss_pred             cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      +.+.    .+|...|...+.-+.++.+.+++.++.-.+
T Consensus       178 ~~~~----~g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         178 LAIN----YGWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             HHHh----hCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence            9984    789999999999999999988776644443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.02  E-value=0.012  Score=48.76  Aligned_cols=82  Identities=11%  Similarity=0.196  Sum_probs=59.2

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc-----c----------cccchHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK-----P----------TQAAWRVVFVAAAV   99 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~-----~----------~~~~~~~~F~~~~~   99 (154)
                      .+........++.++.| +....-..+.+.+-.+|.+++|++++++....     +          .-..++..|...+.
T Consensus       118 i~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~  197 (422)
T COG0738         118 IGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAG  197 (422)
T ss_pred             hHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            34445566678888886 56888899999999999999999999888720     0          01346777888888


Q ss_pred             HHHHHHHHHHHhccCCcc
Q psy3469         100 VYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus       100 ~~~i~~~~~~~~~~~~~q  117 (154)
                      ..++..+.....+-++.|
T Consensus       198 ~lvll~v~~~~~k~p~~~  215 (422)
T COG0738         198 LLVLLAVLILLSKLPDLQ  215 (422)
T ss_pred             HHHHHHHHHHhccCCcCC
Confidence            887777766555544433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.00  E-value=0.017  Score=48.22  Aligned_cols=79  Identities=10%  Similarity=0.087  Sum_probs=50.9

Q ss_pred             HHhhhhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccC---cccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQG---KPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~---~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      ..+...++.+...|+.  +++|....++...++++|+++.+.+...+.+.   .+...+|+....+.+++.+++.+...+
T Consensus       120 ~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~  199 (473)
T PRK10429        120 YTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR  199 (473)
T ss_pred             HHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            3444456778888876  46799999998888888877776665544321   111235777777777776666655444


Q ss_pred             hccC
Q psy3469         111 AASG  114 (154)
Q Consensus       111 ~~~~  114 (154)
                      ..++
T Consensus       200 ~~~e  203 (473)
T PRK10429        200 NVHE  203 (473)
T ss_pred             Ccee
Confidence            3433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.99  E-value=0.013  Score=48.41  Aligned_cols=44  Identities=11%  Similarity=0.181  Sum_probs=39.0

Q ss_pred             hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      ...+.+.+.|..| ++|+.+.++..+.--+|.+++..+.|.+.+.
T Consensus       107 ~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~  151 (403)
T PF03209_consen  107 GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP  151 (403)
T ss_pred             HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            4467789999886 6799999999999999999999999998885

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.98  E-value=0.0077  Score=52.31  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc-c-------------
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK-P-------------   85 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~-~-------------   85 (154)
                      +....+.+..++..+.|..........+-..| ++.|+++|+..+++.+|+.++..+...+.... +             
T Consensus       404 n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~  483 (599)
T PF06609_consen  404 NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALA  483 (599)
T ss_pred             CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence            33334444555555555554444444444566 67999999999999999999988876554311 0             


Q ss_pred             --------------------------------------------cccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          86 --------------------------------------------TQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        86 --------------------------------------------~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                                                                  --++||++|+....+.+++.+..+++.+.++
T Consensus       484 aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~  558 (599)
T PF06609_consen  484 AGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDK  558 (599)
T ss_pred             cCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence                                                        1256889999998888888888877775553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254|consensus

Probab=96.96  E-value=0.0087  Score=50.61  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=68.4

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccch
Q psy3469          12 LVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAW   90 (154)
Q Consensus        12 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~   90 (154)
                      .++..+.. +....+..-.+...+.|........++.|+.| +.||...+..+....+|..++ .+.|+..+.. . .+|
T Consensus       133 ~ii~~~a~-~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-~-~~W  208 (513)
T KOG0254|consen  133 AIIIALAP-SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-Y-AGW  208 (513)
T ss_pred             HHHHHHhh-hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-C-ccH
Confidence            33334443 44444444455555555555566678899998 579999999999999888888 5666665531 1 589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          91 RVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        91 ~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      |..+.+..+..++-.+. .++.++++.
T Consensus       209 r~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  209 RIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            98888887777777776 666655554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.93  E-value=0.023  Score=45.26  Aligned_cols=67  Identities=22%  Similarity=0.359  Sum_probs=39.3

Q ss_pred             hhhhhhhhcccCcchHHHHHHHHHHHHH-HHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          40 YSGFKVNHLDISPRFAGILMSFTNCLAN-LAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        40 ~~~~~~~~~d~~p~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .+.......|..|+++|++.++.+.... +|..+++.+.+...+     ..|. .+...+++.+++.+.++++.
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~  372 (377)
T PRK11102        305 SSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAPFT-----SAWP-MVWSMAFCSILSILFYLYAS  372 (377)
T ss_pred             hHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhccCC-----ChHH-HHHHHHHHHHHHHHHHHHhc
Confidence            3444456677788889999999887754 566666766543322     2233 33344444455555554443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.93  E-value=0.012  Score=49.83  Aligned_cols=83  Identities=13%  Similarity=0.011  Sum_probs=58.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc------cccchHHHHHHHHHHHH
Q psy3469          30 TIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP------TQAAWRVVFVAAAVVYL  102 (154)
Q Consensus        30 ~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~------~~~~~~~~F~~~~~~~~  102 (154)
                      .+....-++..+...+.+++..| +.+|.++|+++...++|+.++..+.+.......      ....+.+.|...+++.+
T Consensus       387 ~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  466 (489)
T PRK10207        387 LFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTL  466 (489)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHH
Confidence            33333344445666777888887 669999999999999999999988876632100      01236788888888888


Q ss_pred             HHHHHHHHhc
Q psy3469         103 FSSTFYIFAA  112 (154)
Q Consensus       103 i~~~~~~~~~  112 (154)
                      ++.+++.+..
T Consensus       467 ~~~v~~~~~~  476 (489)
T PRK10207        467 GVAVVMALMV  476 (489)
T ss_pred             HHHHHHHHHH
Confidence            7777666654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.92  E-value=0.0077  Score=50.97  Aligned_cols=108  Identities=10%  Similarity=0.024  Sum_probs=63.1

Q ss_pred             ccchhHHHHHHHHhhcCC--------ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHh
Q psy3469           3 LGQYGPAVCLVAASYTGC--------DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLA   73 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~   73 (154)
                      +|+++.++++..+.....        +.++.+....+....-.+..+...+.+.+..| +.||..+|++.....+|+.++
T Consensus       355 ~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~  434 (500)
T PRK09584        355 IGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA  434 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777666544321        12222332333333334445667778889988 569999998877777777776


Q ss_pred             hhhhhhccc------CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          74 PIIAGYVIQ------GKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        74 P~i~G~i~~------~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      ..+.+....      ......++...|...+.+.++.++++++
T Consensus       435 g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        435 GYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            666553221      0001134778888888877655544444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.85  E-value=0.016  Score=48.17  Aligned_cols=99  Identities=10%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHH-HHHHHHHHhHhhhhhhhcccCcccccc
Q psy3469          12 LVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFT-NCLANLAGLLAPIIAGYVIQGKPTQAA   89 (154)
Q Consensus        12 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~-~~~~~lg~~i~P~i~G~i~~~~~~~~~   89 (154)
                      ....++.+ +++.....=.+-..-..+..-....++++..| +..++.+.+. ++..++|.++.+.+.|++.|+    .|
T Consensus       303 i~~~~~~~-~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~----~G  377 (412)
T PF01306_consen  303 IIGSGFAT-NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR----IG  377 (412)
T ss_dssp             HHHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHhhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh----cC
Confidence            44555665 55432221111111122223345567888776 5578999985 688899999999999999995    78


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          90 WRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        90 ~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      ++..|++++++.+...++..+.-+++
T Consensus       378 ~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  378 FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            99999999888777666655554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10133 L-fucose transporter; Provisional

Probab=96.81  E-value=0.011  Score=49.09  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccc-hHHHHHHHHHHHHH
Q psy3469          25 TVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAA-WRVVFVAAAVVYLF  103 (154)
Q Consensus        25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~-~~~~F~~~~~~~~i  103 (154)
                      .+..+.+..++.+..+|..++...+..|++.+.+.++.. ...+|+.++|.+.|.+.+.    .+ -+..|++.....+.
T Consensus       350 ~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~----~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA----AGNIPTAELIPALCFAV  424 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHh----ccchHHHHHHHHHHHHH
Confidence            344555566667777888898888888888888888886 4667899999999999884    33 56777755444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.80  E-value=0.024  Score=45.07  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=35.3

Q ss_pred             HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .+...+.......|..|+++|++.++.+.....++.+.+.+.|.+.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~  360 (385)
T TIGR00710       314 NSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHG  360 (385)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44445556667778778889999999999998877777777775544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0569|consensus

Probab=96.77  E-value=0.0044  Score=52.48  Aligned_cols=85  Identities=13%  Similarity=0.085  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhh-hcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469          29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAG-YVIQGKPTQAAWRVVFVAAAVVYLFSST  106 (154)
Q Consensus        29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G-~i~~~~~~~~~~~~~F~~~~~~~~i~~~  106 (154)
                      -.+.....+...+....+++|.+| +.||....+......+|-.++-.++- .+.++   ...|.+.+.+..+..++..+
T Consensus       123 R~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt---~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  123 RLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT---EDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC---CcchHHHHHHHHHHHHHHHH
Confidence            333333345555566678899999 56999999999999999999854433 55553   46699999888777766666


Q ss_pred             HHHHhccCCcc
Q psy3469         107 FYIFAASGDRQ  117 (154)
Q Consensus       107 ~~~~~~~~~~q  117 (154)
                      .. .+.++.|+
T Consensus       200 ~l-~~~PESPk  209 (485)
T KOG0569|consen  200 LL-PFLPESPK  209 (485)
T ss_pred             HH-hcCCCCcc
Confidence            44 44444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.74  E-value=0.015  Score=48.49  Aligned_cols=84  Identities=15%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccC---cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHH
Q psy3469          27 GILTIGLGFNGAVYSGFKVNHLDIS---PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLF  103 (154)
Q Consensus        27 ~~l~~~~~~~g~~~~~~~~~~~d~~---p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i  103 (154)
                      +++.++..+..+.--..-+...|..   |+.+|...+....+..+|++++..+.|.+.+.    .+++..|.+.+.+.++
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~----~~~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS----FGPQGVFLISAALPLL  166 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc----CCCeEEehHHHHHHHH
Confidence            3333333333333334445555643   44488999999999999999999999999885    5678888888877777


Q ss_pred             HHHHHHHhccC
Q psy3469         104 SSTFYIFAASG  114 (154)
Q Consensus       104 ~~~~~~~~~~~  114 (154)
                      ..+..+++.++
T Consensus       167 ~~~~~~~~~~e  177 (433)
T PF03092_consen  167 MLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHhhhh
Confidence            76666555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.68  E-value=0.0052  Score=51.09  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      +|..++..-++...+.| ++.+...|+++..+..+.+++|.+.+.+.+.   +++-|..+.....+++++.+..+.
T Consensus       355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i---Tg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI---TGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH---hcchhhHHHHHHHHHHhhHhhEEe
Confidence            45556677778888777 7799999999999999999999999999995   577888888888888888776543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.05  Score=46.01  Aligned_cols=93  Identities=14%  Similarity=0.104  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccC---cccccchHHHHHHHH
Q psy3469          24 LTVGILTIGLGFNGAVYSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQG---KPTQAAWRVVFVAAA   98 (154)
Q Consensus        24 ~~~~~l~~~~~~~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~---~~~~~~~~~~F~~~~   98 (154)
                      ++.+...+...+..+..-++.+...++.  |++|....++-..+..+|+++...+.+.+...   .+...+|+..-.+.+
T Consensus       114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~  193 (467)
T COG2211         114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG  193 (467)
T ss_pred             HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence            4444444444445555556788888876  57899999999999999977776655555433   112467877777777


Q ss_pred             HHHHHHHHHHHHhccCCc
Q psy3469          99 VVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        99 ~~~~i~~~~~~~~~~~~~  116 (154)
                      .+..+..+..++-.+++.
T Consensus       194 vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         194 VIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHHHHHHHHhhccc
Confidence            776666665544444443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.60  E-value=0.054  Score=45.85  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=75.3

Q ss_pred             HHHHHhhc-CCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chH--------------------------HHHHHHH
Q psy3469          11 CLVAASYT-GCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFA--------------------------GILMSFT   62 (154)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~--------------------------g~~~g~~   62 (154)
                      +.+.+.+. +.+.+...++++++..+.+.....+.+++.|+.+ +.+                          +.++|..
T Consensus       114 ~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G  193 (477)
T PF11700_consen  114 ATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLG  193 (477)
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHH
Confidence            33344443 3234566777788877777766677788999875 556                          9999999


Q ss_pred             HHHHHHHHhHhhhhhhhcccCcc----cccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469          63 NCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP  118 (154)
Q Consensus        63 ~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~  118 (154)
                      ...+++|+.+.-.+.-.+....+    ...+.|..+.+.++-.++-.+...++.++++.+
T Consensus       194 ~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~  253 (477)
T PF11700_consen  194 WALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGP  253 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999988776544432211    134568889998888888888777777766654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.55  E-value=6e-05  Score=61.88  Aligned_cols=86  Identities=21%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469          30 TIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY  108 (154)
Q Consensus        30 ~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~  108 (154)
                      .+..+..|........++.|..| ++||...++.+....+|.+++..+.-.+.... ...+||..+.+.+...++..+..
T Consensus       110 ~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~Wr~~~~~~~~~~l~~~~~~  188 (451)
T PF00083_consen  110 FLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS-DNWGWRILLIFGAIPSLLVLLLR  188 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            33333445555667778899876 77999999999999889888887765443321 13569999998877776654433


Q ss_pred             HHhccCCcc
Q psy3469         109 IFAASGDRQ  117 (154)
Q Consensus       109 ~~~~~~~~q  117 (154)
                       ++.++.|.
T Consensus       189 -~~~pESP~  196 (451)
T PF00083_consen  189 -FFLPESPR  196 (451)
T ss_pred             -cccccccc
Confidence             44454443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.54  E-value=0.027  Score=47.30  Aligned_cols=55  Identities=11%  Similarity=0.030  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          28 ILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        28 ~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      ...+.....+...+......++..| +++|.+.|+.++..++|+.+|+.+.|.+.+
T Consensus       357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555556666777666 779999999999999999999999998854

>TIGR00788 fbt folate/biopterin transporter

Probab=96.46  E-value=0.0086  Score=50.26  Aligned_cols=67  Identities=13%  Similarity=0.155  Sum_probs=46.2

Q ss_pred             hhhhhhhcccCcchH---HHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          41 SGFKVNHLDISPRFA---GILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        41 ~~~~~~~~d~~p~~~---g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      ...-....|..++++   +...++......+|.++++.+.|++.+.    .+|+..|++.+.+.++..+...++
T Consensus       139 v~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~----~~~~~~f~~~a~l~ll~~~~~~~~  208 (468)
T TIGR00788       139 VLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK----TLTRILFLITAALLLLQLFVSNLS  208 (468)
T ss_pred             HhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHHhc
Confidence            345556666555333   3344444455568999999999999884    689999999988888874444333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.44  E-value=0.022  Score=48.29  Aligned_cols=90  Identities=17%  Similarity=-0.022  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCc---chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHH
Q psy3469          25 TVGILTIGLGFNGAVYSGFKVNHLDISP---RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVY  101 (154)
Q Consensus        25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p---~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~  101 (154)
                      ++.++++.........+.-++++++..|   ++.|...|+.|.+-.++.++..+..|.+.+..+  .+-.+.|.+.++.+
T Consensus       383 ~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--~~~~~~~~~~gv~~  460 (477)
T TIGR01301       383 ALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--GGNLPAFVVGAVAA  460 (477)
T ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--CCCeeHHHHHHHHH
Confidence            3334444444444445666778888665   457999999999999999999999998665432  23566888888888


Q ss_pred             HHHHHHHHHhccCCc
Q psy3469         102 LFSSTFYIFAASGDR  116 (154)
Q Consensus       102 ~i~~~~~~~~~~~~~  116 (154)
                      +++++..++.-++.+
T Consensus       461 ~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       461 FVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHHhCCCCC
Confidence            888888777665543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00896 CynX cyanate transporter

Probab=96.43  E-value=0.0089  Score=47.54  Aligned_cols=50  Identities=16%  Similarity=0.056  Sum_probs=37.8

Q ss_pred             HHHHhhhhhhhhhhcccC-c-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          34 GFNGAVYSGFKVNHLDIS-P-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        34 ~~~g~~~~~~~~~~~d~~-p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+.+...+...+...+.. + ++++.+.|+.+.+++++++++|.+.|++.|.
T Consensus       297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555543 3 5689999999999999999999999999985

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.39  E-value=0.023  Score=46.81  Aligned_cols=94  Identities=13%  Similarity=0.177  Sum_probs=57.4

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHH-HHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGI-LMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~-~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .++.+++..++.+.+ +. ..+..+.+..++.+..+|..++...+..+++... ..++....  +|+++.|++.|++.|.
T Consensus       306 ~~~~~~~~ll~~~~~-~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       306 AIIGMALCLGSIFAG-GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHHHHHHcC-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence            344444555555543 33 3345555555555666788888888877665443 44444433  9999999999999994


Q ss_pred             cc--cccchHHHHHHHHHHHH
Q psy3469          84 KP--TQAAWRVVFVAAAVVYL  102 (154)
Q Consensus        84 ~~--~~~~~~~~F~~~~~~~~  102 (154)
                      .+  +.++++..|++...+.+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       382 KEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             hcccccCccchHHHHHHHHHH
Confidence            11  11247778886544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0255|consensus

Probab=96.37  E-value=0.041  Score=46.39  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             ccchhHHHHHHHHhhcCCChh--HHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469           3 LGQYGPAVCLVAASYTGCDPY--LTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~   79 (154)
                      .+++..+++++...+......  ...+...++.++.+......+.+..|+.| ..|..+.|..+.++.++++++|.+.-.
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~  464 (521)
T KOG0255|consen  385 LSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLL  464 (521)
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666542222  34555555666666666667889999998 669999999999999999999999866


Q ss_pred             ccc
Q psy3469          80 VIQ   82 (154)
Q Consensus        80 i~~   82 (154)
                      ...
T Consensus       465 ~~~  467 (521)
T KOG0255|consen  465 LRQ  467 (521)
T ss_pred             Hhh
Confidence            654

>KOG2816|consensus

Probab=96.36  E-value=0.024  Score=47.92  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      ....+...+.++|... ++|....|+.+..-..+..++|.+.+.+...    .++-.+|.+.+...++..+...++.++.
T Consensus       127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----~~~a~~f~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----LGIALVFLIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHHHhhccccc
Confidence            3345667778999876 7799999999999999999999999999984    7788899998888888888777777666


Q ss_pred             ccCCCC
Q psy3469         116 RQPWDN  121 (154)
Q Consensus       116 ~q~w~~  121 (154)
                      .++-.+
T Consensus       203 l~~~~~  208 (463)
T KOG2816|consen  203 LQEKER  208 (463)
T ss_pred             cCcccc
Confidence            664333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.36  E-value=0.058  Score=44.72  Aligned_cols=96  Identities=20%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc------cccchHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP------TQAAWRVV   93 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~------~~~~~~~~   93 (154)
                      +.+.....+.+.....|...-+.-+.++|+. +++.|...|.+...+.++..++-.+.|.+.|.-.      ...+|..+
T Consensus       300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~V  379 (403)
T PF03209_consen  300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVV  379 (403)
T ss_pred             cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            4433333333333334554445667888887 4789999999999999999999999999887411      23568889


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCc
Q psy3469          94 FVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        94 F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      |..=+..++++.++.....+++.
T Consensus       380 F~lEa~ll~~a~~ll~~l~~~~f  402 (403)
T PF03209_consen  380 FALEAVLLLAALVLLGRLDRREF  402 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcc
Confidence            99988888888877666655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG1330|consensus

Probab=96.21  E-value=0.0088  Score=50.33  Aligned_cols=80  Identities=11%  Similarity=0.108  Sum_probs=46.9

Q ss_pred             cchhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHH-hHhhhhhhhc
Q psy3469           4 GQYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAG-LLAPIIAGYV   80 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~-~i~P~i~G~i   80 (154)
                      +..+++.++++.+.... +.+..++++.++....-.+.+...-...++. |++|.++.++...+..+-+ +-+|.+.|.+
T Consensus       330 g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  330 GAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence            44555566666655431 2222333333333333333344444566654 5889999999888876644 4456699999


Q ss_pred             ccC
Q psy3469          81 IQG   83 (154)
Q Consensus        81 ~~~   83 (154)
                      .|.
T Consensus       410 sd~  412 (493)
T KOG1330|consen  410 SDK  412 (493)
T ss_pred             HHH
Confidence            885

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.21  E-value=0.051  Score=47.84  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCc-c---hHHHHHHHHHHHHHHHHhHhhhhhhhcccCc---ccccchHHHHHHHH
Q psy3469          26 VGILTIGLGFNGAVYSGFKVNHLDISP-R---FAGILMSFTNCLANLAGLLAPIIAGYVIQGK---PTQAAWRVVFVAAA   98 (154)
Q Consensus        26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~---~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~---~~~~~~~~~F~~~~   98 (154)
                      ++.+.+...+.|...+...+...|..+ +   .+-....+...+.++|+++++++.+++.+..   +...+|..+|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            344455555556666777777777442 2   3778899999999999999999999997421   11246999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy3469          99 VVYLFSSTFYIFAAS  113 (154)
Q Consensus        99 ~~~~i~~~~~~~~~~  113 (154)
                      ++++++.+++....+
T Consensus       169 i~m~ia~lvf~~g~k  183 (654)
T TIGR00926       169 ILMILALIVFMAGSK  183 (654)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999888765543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.12  E-value=0.0097  Score=46.48  Aligned_cols=46  Identities=20%  Similarity=0.290  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhh
Q psy3469          29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAP   74 (154)
Q Consensus        29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P   74 (154)
                      ..+...+.+...+...+..+|..| +++|++.|+.++..+++++++|
T Consensus       306 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  306 LFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            333333556667788889999887 7899999999999999999998

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=96.08  E-value=0.081  Score=43.67  Aligned_cols=63  Identities=11%  Similarity=0.091  Sum_probs=44.8

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      +.+..++...+.....+...+..++.+.|..+        +..|...|+.+++..+|..++|.+.|++.+.
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444455556778888888653        2357889999999999999999999998764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=96.05  E-value=0.17  Score=40.71  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=13.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          54 FAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        54 ~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.|.+.++.    .++..++|.+.|++.+
T Consensus       324 ~~g~~~~~~----~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        324 RAGVASSTL----GIAQVCGSSLWIWLAA  348 (392)
T ss_pred             cccHHHHHH----HHHHHHHHHHHHHHHH
Confidence            345555544    4555555666666655

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.02  E-value=0.15  Score=41.90  Aligned_cols=73  Identities=14%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      .+...-.....+.+-+|++.+..+|+++..-++++.+++.+.-.+.+.   ..+|+....+-+...+++.+.|+--
T Consensus       113 Iav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~---~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         113 IAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQH---SGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh---hccHHHHHHHHHHHHHHHHHHHhhh
Confidence            333344556677778899999999999999999999999999999884   2579999888888888888877654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=95.98  E-value=0.043  Score=46.39  Aligned_cols=79  Identities=23%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             chhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccC--------cchHHHHHHHHHHHHHHHHhHhhh
Q psy3469           5 QYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDIS--------PRFAGILMSFTNCLANLAGLLAPI   75 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~--------p~~~g~~~g~~~~~~~lg~~i~P~   75 (154)
                      .+...+...++-+.+. +.+..++..++...+.+...+..|+.++|..        .+.-|...|...++.-+|.+++..
T Consensus       309 ~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~  388 (467)
T COG2211         309 LLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF  388 (467)
T ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            3444444444444442 3344555556666777777788999998843        134699999999999999999999


Q ss_pred             hhhhcccC
Q psy3469          76 IAGYVIQG   83 (154)
Q Consensus        76 i~G~i~~~   83 (154)
                      +.|++++.
T Consensus       389 ~~g~~L~~  396 (467)
T COG2211         389 IPGWILGA  396 (467)
T ss_pred             HHHHHHHH
Confidence            99988764

>PTZ00207 hypothetical protein; Provisional

Probab=95.96  E-value=0.012  Score=51.18  Aligned_cols=96  Identities=8%  Similarity=-0.063  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHh-hhhhhhcccCccc---------ccchHHHH
Q psy3469          25 TVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLA-PIIAGYVIQGKPT---------QAAWRVVF   94 (154)
Q Consensus        25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~-P~i~G~i~~~~~~---------~~~~~~~F   94 (154)
                      ..+...+...+.|+..+.......|++.++-|+.+-+.....-+|..+- -.+.|.+.|.+..         .+=++..|
T Consensus       455 L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        455 LPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL  534 (591)
T ss_pred             hHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence            3445555566677777888889999766999999999999998888887 6788999876431         12288899


Q ss_pred             HHHHHHHHHHHHHHHHhccCCccCCC
Q psy3469          95 VAAAVVYLFSSTFYIFAASGDRQPWD  120 (154)
Q Consensus        95 ~~~~~~~~i~~~~~~~~~~~~~q~w~  120 (154)
                      ++++++++++.+...++.-+.++-+.
T Consensus       535 ~v~~~~~~~g~~~s~~l~~R~r~~y~  560 (591)
T PTZ00207        535 AFLLGLSFLAFITSTYVHLQYRRLCL  560 (591)
T ss_pred             HHHHHHHHHHHHHHhheeeehHHHHH
Confidence            99999999999988887655554333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.92  E-value=0.095  Score=44.41  Aligned_cols=52  Identities=17%  Similarity=0.042  Sum_probs=42.5

Q ss_pred             HHHHHHHhhhh-hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          31 IGLGFNGAVYS-GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        31 ~~~~~~g~~~~-~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .+-.......+ .+|....|+.. ++..+-+++.+..+++|.+++|.++.++.+
T Consensus       137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344456 89999999875 889999999999999999999999998873

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2325|consensus

Probab=95.91  E-value=0.095  Score=44.53  Aligned_cols=91  Identities=11%  Similarity=-0.001  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhh---hhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc--c-------cccchHHHHH
Q psy3469          29 LTIGLGFNGAV---YSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK--P-------TQAAWRVVFV   95 (154)
Q Consensus        29 l~~~~~~~g~~---~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~--~-------~~~~~~~~F~   95 (154)
                      +.++..+.|..   .+..-++++|.. ++.|-++.+..+....+|.++||.+...+...-  +       .-+.|...=+
T Consensus       133 mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w  212 (488)
T KOG2325|consen  133 MLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAW  212 (488)
T ss_pred             HHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHH
Confidence            33344444433   455667888854 577888888888877777777777755543320  0       1245677788


Q ss_pred             HHHHHHHHHHHHHHHhccCCccCC
Q psy3469          96 AAAVVYLFSSTFYIFAASGDRQPW  119 (154)
Q Consensus        96 ~~~~~~~i~~~~~~~~~~~~~q~w  119 (154)
                      +++.+.++..+...++.++...+-
T Consensus       213 ~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  213 LMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHHHHHHHHhheeecccCc
Confidence            888888888888888777665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.88  E-value=0.056  Score=44.39  Aligned_cols=80  Identities=19%  Similarity=0.197  Sum_probs=57.4

Q ss_pred             cchhHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhh
Q psy3469           4 GQYGPAVCLVAASYTG-CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAP   74 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P   74 (154)
                      +.++.+++...+.+.+ .+.+..++...+...+.+......++..+|..+        +..|...|+.++...++..+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~  375 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG  375 (428)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence            4455555555555543 255555666666666666666778888888654        3369999999999999999999


Q ss_pred             hhhhhcccC
Q psy3469          75 IIAGYVIQG   83 (154)
Q Consensus        75 ~i~G~i~~~   83 (154)
                      .+.|.+.+.
T Consensus       376 ~i~g~~l~~  384 (428)
T PF13347_consen  376 AIVGLLLAL  384 (428)
T ss_pred             HHHHHHHHH
Confidence            999988654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=95.86  E-value=0.11  Score=42.57  Aligned_cols=46  Identities=17%  Similarity=0.052  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469          54 FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS  104 (154)
Q Consensus        54 ~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~  104 (154)
                      .+|++.|+.++....+..+++.+.|++.+.     +-+..|...+.+..+.
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVEIGRWLWFN-----GGRLPFHLLAVVAGVI  389 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHH
Confidence            479999999999999999999999999773     3345555554444443

>KOG2615|consensus

Probab=95.82  E-value=0.042  Score=45.54  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=36.7

Q ss_pred             hhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          38 AVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        38 ~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      ...+.....+....| ++||++.|+..+.+.++.++||.+.|.+..
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            334555555566777 779999999999999999999999998865

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.79  E-value=0.056  Score=42.02  Aligned_cols=65  Identities=12%  Similarity=0.060  Sum_probs=42.4

Q ss_pred             hhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          46 NHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        46 ~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      +...-.|++||++.|+.-..-.+++.+-..+...+.+.     +-...+.+.+....+..+...++.+..
T Consensus       120 t~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-----~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  120 TCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-----DPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            33345689999999999999999999988888877763     222334444444443333344444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.63  E-value=0.063  Score=44.28  Aligned_cols=52  Identities=13%  Similarity=0.057  Sum_probs=39.3

Q ss_pred             HHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          32 GLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        32 ~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      ...+.+...+.......+..| +++|.+.|+.++.+++|+.++|.+.|.+.+.
T Consensus       358 ~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       358 RGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444555556555 7899999999999999999999999999873

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.46  E-value=0.036  Score=45.98  Aligned_cols=94  Identities=14%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccc
Q psy3469          10 VCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAA   89 (154)
Q Consensus        10 i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~   89 (154)
                      +.++...+++ + ...+..+.+...+++..+|..++...+..|++...+.+ .-..+.+|+++.|++.|++.|.    .+
T Consensus       314 ll~~~~~l~~-g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~-~l~maivGGAiiP~l~G~i~d~----~g  386 (422)
T COG0738         314 LLLLAVALIG-G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSG-LLVMAIVGGAIIPPLQGVIADM----FG  386 (422)
T ss_pred             HHHHHHHHhc-C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccce-eeeeheecchHHHHHHHHHHHh----hh
Confidence            3344445554 4 34555555555566777899998888877755444444 4466788999999999999995    44


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q psy3469          90 WRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        90 ~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      -...+......+.+..+.+.+
T Consensus       387 ~~~~~~~~pllc~lyV~~~~~  407 (422)
T COG0738         387 IQLTFLIVPLLCYLYVLFFAL  407 (422)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            444554344444444433333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.12  E-value=0.96  Score=37.77  Aligned_cols=78  Identities=5%  Similarity=0.069  Sum_probs=51.4

Q ss_pred             hhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCC
Q psy3469          42 GFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWD  120 (154)
Q Consensus        42 ~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~  120 (154)
                      .+++++=... |++--.+++....+.-+|.+++..++=.++..  ...++...+++..+...++.+..+++-+.++.-+-
T Consensus       113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~--~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f  190 (412)
T PF01770_consen  113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF--GGVSYFQLNYISLASVSLALLIALFLPMPKRSLFF  190 (412)
T ss_pred             HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccce
Confidence            4555555544 46667778877777777777777666655553  23668888888877777777776676655554333


Q ss_pred             C
Q psy3469         121 N  121 (154)
Q Consensus       121 ~  121 (154)
                      +
T Consensus       191 ~  191 (412)
T PF01770_consen  191 H  191 (412)
T ss_pred             e
Confidence            3

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00889 2A0110 nucleoside transporter

Probab=94.87  E-value=0.11  Score=42.80  Aligned_cols=37  Identities=8%  Similarity=-0.071  Sum_probs=22.9

Q ss_pred             HHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469          66 ANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF  107 (154)
Q Consensus        66 ~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~  107 (154)
                      +.+|.+++|.+.|.+..    ...|. .|++.+++.++..+.
T Consensus       139 G~lG~~ig~~l~g~l~~----~~~~~-~f~~~~~~~~~~~~~  175 (418)
T TIGR00889       139 GTIGFIAAMWAVSLLDI----ELSNI-QLYITAGSSALLGVF  175 (418)
T ss_pred             hhHHHHHHHHHHHHhcc----cchhH-HHHHHHHHHHHHHHH
Confidence            35788999999998832    13343 455566655555543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3626|consensus

Probab=94.77  E-value=0.13  Score=45.67  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhh----hhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--------------
Q psy3469          25 TVGILTIGLGFNGAVYSGFKV----NHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP--------------   85 (154)
Q Consensus        25 ~~~~l~~~~~~~g~~~~~~~~----~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~--------------   85 (154)
                      ..+++.++..+.|...++.++    ++=|... ++.....|+..+++.+|.++|-++++++...+-              
T Consensus       236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP  315 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP  315 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence            344555666666665555554    5556554 678999999999999999999999988754321              


Q ss_pred             -cccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          86 -TQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        86 -~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                       +-+.|-..|++++.+.++..+.+++|-++.+
T Consensus       316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence             1345777899999999999998877755544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.65  E-value=0.26  Score=41.97  Aligned_cols=41  Identities=15%  Similarity=0.057  Sum_probs=37.7

Q ss_pred             hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .+|...-|... ++..+.+++....+++|.+++..++.++.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999876 889999999999999999999999988877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=94.64  E-value=0.13  Score=43.07  Aligned_cols=48  Identities=17%  Similarity=0.098  Sum_probs=34.2

Q ss_pred             HHhhhhhhhhhhcccCc-------c-hHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          36 NGAVYSGFKVNHLDISP-------R-FAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p-------~-~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+...+..++.+.|...       + ..|...+..+++..+|..+++.+.|++++.
T Consensus       332 ~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        332 HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555677777432       2 247777888899999999999999988753

>KOG1479|consensus

Probab=94.04  E-value=0.18  Score=41.90  Aligned_cols=86  Identities=13%  Similarity=0.088  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469          29 LTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY  108 (154)
Q Consensus        29 l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~  108 (154)
                      .++...+.+..+++.+....++.+++.....+-.+.+|.+.+.+.=..-...-+.   ..+--.-|.+...+.+++.+++
T Consensus       124 vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~---~~sA~~yF~~s~~~~llC~i~y  200 (406)
T KOG1479|consen  124 VVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDS---RTSALIYFITSTVILLLCFVLY  200 (406)
T ss_pred             HHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCC---CceeehhHHHHHHHHHHHHHHH
Confidence            3333444566677788888888889877777767777777666655554455442   2444456778888888999988


Q ss_pred             HHhccCCcc
Q psy3469         109 IFAASGDRQ  117 (154)
Q Consensus       109 ~~~~~~~~q  117 (154)
                      ..+.+.+.-
T Consensus       201 ~~l~~lpf~  209 (406)
T KOG1479|consen  201 LVLPKLPFV  209 (406)
T ss_pred             HHhhcchHH
Confidence            865554443

>KOG3764|consensus

Probab=93.71  E-value=0.31  Score=40.75  Aligned_cols=56  Identities=11%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          54 FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        54 ~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      --|.++++......+|-++||.++|.+.+.    .|++|.-.+.++..++.+-+..++..
T Consensus       400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~----iGF~wl~~iig~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEA----IGFEWLMTIIGILNLIYAPVLLLLRI  455 (464)
T ss_pred             eeeeHHHHHHHHHHHhhhccccccchheee----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999985    88999888888888888777766654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.44  E-value=0.018  Score=49.45  Aligned_cols=94  Identities=11%  Similarity=0.122  Sum_probs=2.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhh----hhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--------------
Q psy3469          25 TVGILTIGLGFNGAVYSGFKV----NHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP--------------   85 (154)
Q Consensus        25 ~~~~l~~~~~~~g~~~~~~~~----~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~--------------   85 (154)
                      .+.++.++-.+.|...++.|+    ++=|-. |++.+...|+..+...+|.++|-.++|.++..+-              
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p  219 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP  219 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence            456667777777776666665    555544 4678999999999999999999999887764310              


Q ss_pred             ----cccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469          86 ----TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP  118 (154)
Q Consensus        86 ----~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~  118 (154)
                          +.+.|=..|++++.+.++..+.+..|-|+-+..
T Consensus       220 ~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  220 SDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             -------------------------------------
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence                123465678888888888888777665555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=93.37  E-value=0.0031  Score=51.72  Aligned_cols=73  Identities=15%  Similarity=0.245  Sum_probs=55.6

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      +..+....|+.| +.|+++.|+....+.+++++.|.+...+.+.    .+-...|.+.++++++..+...++.++++.
T Consensus       368 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~~~~~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  368 PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN----LGGWGVFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc----ccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence            456678899998 6799999999999999999999999888874    222355666666667776666666655543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=93.29  E-value=2.1  Score=36.61  Aligned_cols=102  Identities=19%  Similarity=0.125  Sum_probs=59.0

Q ss_pred             ccchhHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHh----hhhhhhhhhcccCc-chHHHHHHHHHHHH-HHHHhH
Q psy3469           3 LGQYGPAVCLVAASY----TGCDPYLTVGILTIGLGFNGA----VYSGFKVNHLDISP-RFAGILMSFTNCLA-NLAGLL   72 (154)
Q Consensus         3 ig~~~~ai~~~~~~~----~~~~~~~~~~~l~~~~~~~g~----~~~~~~~~~~d~~p-~~~g~~~g~~~~~~-~lg~~i   72 (154)
                      +|+++.++++.++.+    ...+......++...+.++..    ..|...+.+++++| +.+|..+|.+.... .+|+.+
T Consensus       350 ~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~  429 (493)
T PRK15462        350 LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL  429 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777655532    111111222223333333222    24667788899999 55999999996644 577777


Q ss_pred             hhhhhhhcccCcc--------cccchHHHHHHHHHHHHHH
Q psy3469          73 APIIAGYVIQGKP--------TQAAWRVVFVAAAVVYLFS  104 (154)
Q Consensus        73 ~P~i~G~i~~~~~--------~~~~~~~~F~~~~~~~~i~  104 (154)
                      +..+.+.......        +...|...|...+.+.++.
T Consensus       430 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        430 AGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            7666665532100        1135777888888877665

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=92.71  E-value=0.16  Score=40.08  Aligned_cols=45  Identities=20%  Similarity=0.208  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q psy3469          26 VGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAG   70 (154)
Q Consensus        26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~   70 (154)
                      +..+.+...+.+...+..+....++.|+++|++.|+.+..+++|+
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       322 IVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence            344444455566667778888999999999999999999988764

>PRK03612 spermidine synthase; Provisional

Probab=92.42  E-value=1  Score=38.69  Aligned_cols=50  Identities=10%  Similarity=-0.015  Sum_probs=35.9

Q ss_pred             HHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469          33 LGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus        33 ~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .++.|+..|.......+...++.|...|-..++..+|+++|+++.|+++-
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            34566666655555544444456788888899999999999999997764

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.37  E-value=0.53  Score=40.25  Aligned_cols=99  Identities=11%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCcchHHHHHHHHHHHHHHHHhHhhhhh----h
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLD-ISPRFAGILMSFTNCLANLAGLLAPIIA----G   78 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d-~~p~~~g~~~g~~~~~~~lg~~i~P~i~----G   78 (154)
                      +.++.+.+++++.+.. +.|.+....++...+..+..+....-++. +..+.-|.+.|+.++.+-+=..+-..++    |
T Consensus       336 ~s~~~~gll~~m~~t~-~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~g  414 (511)
T TIGR00806       336 VSAIQAGLVFWMSQSH-DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRG  414 (511)
T ss_pred             HHHHHHHHhhhhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccc
Confidence            4455566677777775 88888888888777777766554444444 4445569999998887765554444333    2


Q ss_pred             hcccCcccccc---hHHHHHHHHHHHHHHHH
Q psy3469          79 YVIQGKPTQAA---WRVVFVAAAVVYLFSST  106 (154)
Q Consensus        79 ~i~~~~~~~~~---~~~~F~~~~~~~~i~~~  106 (154)
                      .-++.   ..+   |..-|.+.+.+.++..+
T Consensus       415 l~l~i---~~Qf~vY~~yf~~~~~i~~~~~~  442 (511)
T TIGR00806       415 LGLQV---RKQFRIYSVYFLVLSIICFFGAG  442 (511)
T ss_pred             cCCCc---eeEEEehhhHHHHHHHHHHHHHH
Confidence            22221   122   34456666666665544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=92.24  E-value=0.23  Score=41.39  Aligned_cols=55  Identities=13%  Similarity=0.199  Sum_probs=38.8

Q ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      ++.+.=+|=...++++|-+++..++|++.+     .+-+..|++.....++..++..+.+
T Consensus       134 r~~~feYG~~R~wGSig~ai~s~~~G~L~~-----i~p~~~fwi~s~~~~il~lll~~~~  188 (412)
T PF01306_consen  134 RRNGFEYGRARMWGSIGFAIASLLAGILFN-----INPNIIFWIASAAAIILLLLLLLLK  188 (412)
T ss_dssp             HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             HHhcCCcchHHHHhhHHHHHHHHHhheeee-----eCccHHHHHHHHHHHHHHHHHHHcC
Confidence            445666888999999999999999999987     3456788876655554444433333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=91.87  E-value=1.1  Score=37.07  Aligned_cols=99  Identities=12%  Similarity=0.015  Sum_probs=45.6

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhh-hhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIA-GYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~-G~i~~   82 (154)
                      +.+..++.++...... +.+..+.++.+...+.....+..-+...+... .++.-+|-+..+|.+|=+++.+.. +.+..
T Consensus        74 ~~l~~~~~~~~~~~~~-~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~-~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~  151 (400)
T PF03825_consen   74 LSLLSALALLLLAFSS-SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG-DRGKDYGRIRLWGSIGFIVAALAFGGLLGG  151 (400)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc-cccCCCCcchhhhhHHHHHHHHHHHHHHHh
Confidence            3444555555555443 54443333333333334444444444444332 345556666777777776665442 23322


Q ss_pred             CcccccchHHHHHHHHHHHHHHH
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSS  105 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~  105 (154)
                      . ....+....+++.+.+.++..
T Consensus       152 ~-~~~~~~~~~~~i~~~~~~ll~  173 (400)
T PF03825_consen  152 Y-LGISGTSLIFYIAAILSLLLA  173 (400)
T ss_pred             h-hccccccHHHHHHHHHHHHHH
Confidence            1 111223345555554444333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=91.80  E-value=0.74  Score=38.61  Aligned_cols=79  Identities=11%  Similarity=0.010  Sum_probs=39.8

Q ss_pred             HHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          34 GFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        34 ~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                      .+.+...++.+.....+.|++.+....-...+|-++..+.-+.....-+..+...+-..-|.+.+++.+++.+.+..+.
T Consensus       118 ~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       118 SGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             hhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            3344545566666666666766555554445554444443333333322110112222345556666677777776654

>KOG3626|consensus

Probab=91.76  E-value=0.64  Score=41.49  Aligned_cols=38  Identities=26%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             hhcccCcchHHHHHHHHHHHHH-HHHhHhhhhhhhcccC
Q psy3469          46 NHLDISPRFAGILMSFTNCLAN-LAGLLAPIIAGYVIQG   83 (154)
Q Consensus        46 ~~~d~~p~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~   83 (154)
                      .+.-+.|++|..+.|+..++-. +|.+-+|++-|+++|.
T Consensus       611 ~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  611 VLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             EEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            3333567999999999887764 5999999999999985

>KOG4112|consensus

Probab=91.43  E-value=0.94  Score=29.86  Aligned_cols=69  Identities=12%  Similarity=0.299  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH----HHHhccCCccCCCCCCCCCCCchhhhhhc
Q psy3469          61 FTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF----YIFAASGDRQPWDNPNNDAPTPRAATKRD  136 (154)
Q Consensus        61 ~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~----~~~~~~~~~q~w~~~~~~~~~~~~~~~~~  136 (154)
                      +....-.+++++|- +.|+..+      ++++..++.++-+++..++    |.+ -++++-.|.+|.++...+..++++.
T Consensus        27 ~~q~ilti~aiVg~-i~Gf~~Q------qls~tvy~vg~~~v~t~li~LPpwP~-y~rn~LkW~~Pa~esssdd~d~g~k   98 (101)
T KOG4112|consen   27 FQQLILTIGAIVGF-IYGFAQQ------QLSVTVYIVGAGFVFTLLITLPPWPW-YRRNPLKWAQPAIESSSDDKDKGTK   98 (101)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCchh-hhcCcccccCCccccccccCCcccc
Confidence            33444444444433 4455544      3555444444333333332    223 3448889999988755544444333


Q ss_pred             c
Q psy3469         137 A  137 (154)
Q Consensus       137 ~  137 (154)
                      |
T Consensus        99 k   99 (101)
T KOG4112|consen   99 K   99 (101)
T ss_pred             c
Confidence            3

>KOG0569|consensus

Probab=91.09  E-value=0.65  Score=39.57  Aligned_cols=72  Identities=7%  Similarity=-0.036  Sum_probs=53.6

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      +..|-+.+|+.| +.|..+.++..++.++.+++.....-.+.+.   .++  +.|+...+.+++..+..++..++++.
T Consensus       387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~---~g~--~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV---IGP--YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc--hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            456778999887 6799999999999999998887777666653   222  66777777777777766666666643

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.04  E-value=1.3  Score=36.91  Aligned_cols=98  Identities=11%  Similarity=-0.014  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469           6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP   85 (154)
Q Consensus         6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~   85 (154)
                      +.+.+.+++.++.+ +.+..++..+++....|+.=..+-. .+...++.   ..+.+++....++.+|+..--.+.+.  
T Consensus        97 ~l~~~g~l~va~~~-~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y~~~---~l~~wssGTG~aGl~Ga~~y~~lT~~--  169 (402)
T PF02487_consen   97 ALSAAGMLLVAFSP-SVWVRLLGVVLASLSSGLGEVTFLS-LTHFYGKS---SLSAWSSGTGGAGLVGALYYLGLTTL--  169 (402)
T ss_pred             HHHHHHHhheeecc-chhHHHHHHHHHhhhhhhhHHHHHH-HHHhcCcc---ccccccCCcChhhHHHHHHHHHHHHh--
Confidence            34445555555544 5555555555554444443222222 23344432   34445555566777777665444431  


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          86 TQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        86 ~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                       ..+.+..+..+..+.++-.+.+++.
T Consensus       170 -g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  170 -GLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             -CcCHHHHHHHHHHHHHHHHHHHHHh
Confidence             2456777777776665555444433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=90.38  E-value=4.9  Score=29.40  Aligned_cols=67  Identities=21%  Similarity=0.339  Sum_probs=49.3

Q ss_pred             HHhhhhhhhhhhcccCcc--hHHHHHHHHHH-HHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469          36 NGAVYSGFKVNHLDISPR--FAGILMSFTNC-LANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS  104 (154)
Q Consensus        36 ~g~~~~~~~~~~~d~~p~--~~g~~~g~~~~-~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~  104 (154)
                      .+...+.....+.|..|+  +++...+.... ...++..++|.+.+.+...  ...+|+..|..........
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         108 GGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA--LLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHH
Confidence            344456677788888885  78999999888 6888999999888877763  3467888777665555444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.36  E-value=1.8  Score=36.09  Aligned_cols=74  Identities=9%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             hhhhhhcccCcc-hHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc-c---cchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          42 GFKVNHLDISPR-FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT-Q---AAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        42 ~~~~~~~d~~p~-~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~-~---~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      +....+++++|+ .=|+.+|+..++.++|..++..++..+.+..+. .   .+..+..+++..+.++...+..++-+++
T Consensus       338 P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~  416 (433)
T PF03092_consen  338 PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQK  416 (433)
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            344567788885 479999999999999999999998888664321 1   2233455556666655554443444333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09848 glucuronide transporter; Provisional

Probab=90.28  E-value=4.8  Score=33.14  Aligned_cols=46  Identities=20%  Similarity=0.125  Sum_probs=25.7

Q ss_pred             HHHhhhhhhhhhhcccC--cchHHHHHHHHHHHHH-----HHHhHhhhhhhhc
Q psy3469          35 FNGAVYSGFKVNHLDIS--PRFAGILMSFTNCLAN-----LAGLLAPIIAGYV   80 (154)
Q Consensus        35 ~~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~-----lg~~i~P~i~G~i   80 (154)
                      +.++...++.+...++.  +++|....++....++     ++..++|.+.+..
T Consensus       122 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        122 CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444455556555554  3568877776654333     4555666665543

>TIGR00901 2A0125 AmpG-related permease

Probab=90.18  E-value=0.93  Score=35.86  Aligned_cols=40  Identities=18%  Similarity=0.197  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHH
Q psy3469          28 ILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLAN   67 (154)
Q Consensus        28 ~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~   67 (154)
                      +..+..++.+...+...+.+++..| +++|+..|+.++..+
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            3334445556667778888999877 679999999887664

>KOG2816|consensus

Probab=89.36  E-value=1.9  Score=36.55  Aligned_cols=79  Identities=14%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469           3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~   81 (154)
                      +|+....+..+..++.. +.|.. ..-.+..++.....+...+...-+. ++++|.+.++...+..+.+.++|.+-+.+.
T Consensus       313 lGl~~~~~~~~~~af~~-~~w~~-~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  313 LGLLSEFLQLLLFAFAT-ETWMM-FAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             HHHHHHHHHHHHHHHhc-cchhh-hHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            35555556666666665 54432 2233333344555666777777754 588999999999999999999999999875


Q ss_pred             cC
Q psy3469          82 QG   83 (154)
Q Consensus        82 ~~   83 (154)
                      ..
T Consensus       391 ~~  392 (463)
T KOG2816|consen  391 AL  392 (463)
T ss_pred             HH
Confidence            53

>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins

Probab=89.17  E-value=1  Score=28.55  Aligned_cols=49  Identities=14%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             hHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH---HHhccCCccCCCCCCCC
Q psy3469          71 LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY---IFAASGDRQPWDNPNND  125 (154)
Q Consensus        71 ~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~---~~~~~~~~q~w~~~~~~  125 (154)
                      .+...+.|++.+      +.+..+++.++..+++.++.   +-+.++++.+|.+|+.+
T Consensus        21 ~iisfi~Gy~~q------~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~~~   72 (76)
T PF06645_consen   21 AIISFIVGYITQ------SFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPKPE   72 (76)
T ss_pred             HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCCCCCcc
Confidence            344567788876      36666666555555444432   23567888899988774

Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane

>KOG2533|consensus

Probab=88.34  E-value=2.4  Score=36.23  Aligned_cols=57  Identities=12%  Similarity=-0.032  Sum_probs=29.4

Q ss_pred             hhhhhhhcc-cCcc-hHHHHHHHHHHHHHHHHhHhhhh-hhhcccCcccccchHHHHHHHHHHH
Q psy3469          41 SGFKVNHLD-ISPR-FAGILMSFTNCLANLAGLLAPII-AGYVIQGKPTQAAWRVVFVAAAVVY  101 (154)
Q Consensus        41 ~~~~~~~~d-~~p~-~~g~~~g~~~~~~~lg~~i~P~i-~G~i~~~~~~~~~~~~~F~~~~~~~  101 (154)
                      +....-..+ ..++ ++-+..++.....+.+++++|.+ .+....    ...|..+|.......
T Consensus       386 ~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap----~y~~~~~f~~~~~~~  445 (495)
T KOG2533|consen  386 IIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP----RYGWGAVFYMLVAAC  445 (495)
T ss_pred             HHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc----chhhhhHHHHHHHHH
Confidence            334444455 3443 35555555555556666666555 333333    257888884443333

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.23  E-value=3.2  Score=28.22  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469          52 PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK   84 (154)
Q Consensus        52 p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~   84 (154)
                      ++.++.+.++--..-.+++.+.....||++|++
T Consensus        37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~   69 (116)
T COG5336          37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF   69 (116)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355788888888888999999999999999974

>KOG0254|consensus

Probab=87.75  E-value=5.2  Score=33.84  Aligned_cols=72  Identities=17%  Similarity=0.114  Sum_probs=47.6

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH-HHHHhccCCc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST-FYIFAASGDR  116 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~-~~~~~~~~~~  116 (154)
                      +..|....|..| +.|+.+.++.....++.+++.....-.+...    .++...|...+++..+..+ +..++.++++
T Consensus       414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~----~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA----LGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            456678888998 6799999999999988887775554444442    2234556666666666665 4545554443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=86.08  E-value=17  Score=30.63  Aligned_cols=56  Identities=20%  Similarity=0.135  Sum_probs=43.6

Q ss_pred             cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469          52 PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA  111 (154)
Q Consensus        52 p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~  111 (154)
                      |+.....++.+.-+-.+..+++|+++|.+.+.    .+......+.++..+++...=.++
T Consensus       144 ~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~----~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  144 PGALARMNATMRRIDLFCKLLAPLFVGLLMTF----ASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577778888888889999999999999884    667777777777777776654444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0252|consensus

Probab=84.69  E-value=0.47  Score=40.37  Aligned_cols=65  Identities=8%  Similarity=-0.035  Sum_probs=35.2

Q ss_pred             chhHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHhhh----hhhhhhhcccCc-chHHHHHHHHHHHHHHH
Q psy3469           5 QYGPAVCLVAASYTGC--DPYLTVGILTIGLGFNGAVY----SGFKVNHLDISP-RFAGILMSFTNCLANLA   69 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~----~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg   69 (154)
                      ++++.++.++.....+  .+.-.+..+++.-+..|...    |...+..+|.+- +.||...+..-..+.+|
T Consensus       121 liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G  192 (538)
T KOG0252|consen  121 LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG  192 (538)
T ss_pred             HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence            4444455444433322  22345566666666666664    444456666665 55888877654444443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=82.68  E-value=12  Score=32.12  Aligned_cols=42  Identities=17%  Similarity=0.079  Sum_probs=37.6

Q ss_pred             hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469          42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus        42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      .+|...-|+.. ++..+-+++.+..++++..++..+.+++...
T Consensus       168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            68888889876 7899999999999999999999999998763

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=81.62  E-value=0.45  Score=37.75  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             HHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          35 FNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        35 ~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      +.+..++..+.....+.|++......-.+..|-+...+. ++.-...+.  ...+-..-|.+..++.+++.+.+..+.+
T Consensus        10 ~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~-ii~~~~~~~--~~~~a~~yF~~a~~i~i~~~~~~~~l~~   85 (309)
T PF01733_consen   10 ANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLR-IITKASGSD--VKTSAFIYFIIAVLIVILCIILYFILPR   85 (309)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             hhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHH-HHHHHhhhc--cchhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            445556666777777777775444433333332222211 122222221  1122333455555666666666665543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 7   GPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLA 66
             A  +   +  G      + ++ IG    G V             + AG    FT    
Sbjct: 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391

Query: 67  NLAG-LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYI 109
            L G + A  I GY +        + V+   + +  +      I
Sbjct: 392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.02
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.98
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.71
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.62
2xut_A	524	Proton/peptide symporter family protein; transport	98.58
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.58
2xut_A	524	Proton/peptide symporter family protein; transport	98.42
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.38
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.22
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.05
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.31
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.21

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.02  E-value=1.6e-09  Score=86.47  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=83.3

Q ss_pred             cchhHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhh
Q psy3469           4 GQYGPAVCLVAASY----TGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAG   78 (154)
Q Consensus         4 g~~~~ai~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G   78 (154)
                      +.++.+++.++..+    .+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|.+++|.+.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A           98 GLILAAAVMLFMGFVPWATS-SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHHHHHCHHHHS-SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666    54 55555555555555566667778889999887 77999999999999999999999999


Q ss_pred             hcccCcccccc-hHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          79 YVIQGKPTQAA-WRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        79 ~i~~~~~~~~~-~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      ++.+.    .+ |++.|++.+.+.++..++..++.+++++
T Consensus       177 ~l~~~----~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          177 LGMAW----FNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHHHH----TCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHHH----hccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            98873    56 9999999998888877776666665544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.98  E-value=5.6e-09  Score=84.74  Aligned_cols=109  Identities=16%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-ch--HHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RF--AGILMSFTNCLANLAGLLAPIIAGYV   80 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~--~g~~~g~~~~~~~lg~~i~P~i~G~i   80 (154)
                      ++++.+++.+++.+.+ +.+..++...+...+.+...+...+.+.|..| ++  |+.+.++.+...++|..++|.+.|++
T Consensus        91 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  169 (491)
T 4aps_A           91 GGVLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA  169 (491)
T ss_dssp             HHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666664 55554555555555566667788889999776 56  88899999999999999999999999


Q ss_pred             ccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      .+.    .+|++.|++.+...+++.+.+.+..++...
T Consensus       170 ~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          170 QEA----AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             HHH----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             Hhh----hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            884    689999999988888887777666544433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.93  E-value=2.2e-08  Score=79.77  Aligned_cols=108  Identities=9%  Similarity=0.052  Sum_probs=78.3

Q ss_pred             cchhHHHHHHHH---hhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469           4 GQYGPAVCLVAA---SYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         4 g~~~~ai~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~   79 (154)
                      ++++.+++.++.   .+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+.+..+|..++|.+.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A           97 GLFLYALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555   5554 66555555555555566667778889999887 779999999999999999999999999


Q ss_pred             cc-cCcccccc------------------------hHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          80 VI-QGKPTQAA------------------------WRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        80 i~-~~~~~~~~------------------------~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      +. +.   ...                        |++.|++.+.+.++..+.+.+...++
T Consensus       176 l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~  233 (438)
T 3o7q_A          176 LILSN---VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA  233 (438)
T ss_dssp             HHHTS---SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHhcc---cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            98 43   122                        99999888887777766655544333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.71  E-value=2.5e-08  Score=78.20  Aligned_cols=105  Identities=15%  Similarity=-0.001  Sum_probs=75.3

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      +.+..+++.+...+.+ +.+..+....+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus        71 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  149 (375)
T 2gfp_A           71 GMSIFMLATLVAVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3444555555555543 44444444444444455556677788899876 789999999999999999999999999988


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      .    .+|+..|++.+.+.++..+...++.+
T Consensus       150 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (375)
T 2gfp_A          150 M----WNWRACYLFLLVLCAGVTFSMARWMP  176 (375)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred             h----ccHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            3    68999999988887777664444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.62  E-value=1.2e-07  Score=76.12  Aligned_cols=104  Identities=14%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHH-HHHHHHHHHhHhhhhhhhccc
Q psy3469           5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSF-TNCLANLAGLLAPIIAGYVIQ   82 (154)
Q Consensus         5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~-~~~~~~lg~~i~P~i~G~i~~   82 (154)
                      .++.++.++.+.+.+ +.+..+....+.....+...+..+....|..| +.||++.|+ .+....+|++++|.+.|++.+
T Consensus       296 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          296 GTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             HHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence            334444444444443 44333332222222333334556788889887 669999999 488999999999999999988


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469          83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~  113 (154)
                      .    .+|+..|.+.+++.+++.+..+++.+
T Consensus       375 ~----~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          375 S----IGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             H----SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             h----cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3    56889999999888888876655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.58  E-value=4.5e-07  Score=74.13  Aligned_cols=103  Identities=10%  Similarity=-0.065  Sum_probs=72.4

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHH---HHHHHHHHHhHhhhhhhh
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSF---TNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~---~~~~~~lg~~i~P~i~G~   79 (154)
                      +.++.+++.+++.+.+.+.+..++...+...+.+...+...+.+.|..| ++|+.+.++   .+...++|.+++|.+.|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~  170 (524)
T 2xut_A           91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL  170 (524)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555543144444444444444556666778889999876 668766555   999999999999999999


Q ss_pred             cccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469          80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF  110 (154)
Q Consensus        80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~  110 (154)
                      +.+.    .+|+..|++.+.+.+++.+.+.+
T Consensus       171 l~~~----~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          171 LLKN----FGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHT----SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             Hhcc----ccHHHHHHHHHHHHHHHHHHHHH
Confidence            9874    68999999998887777665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.58  E-value=1.1e-07  Score=75.78  Aligned_cols=99  Identities=15%  Similarity=0.200  Sum_probs=71.5

Q ss_pred             HHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhcccCccc
Q psy3469          10 VCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQGKPT   86 (154)
Q Consensus        10 i~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~~~~~   86 (154)
                      ++++++.+.+. +.+.....+.+...+.+...+..++..+|..| +++|++.|+.+.+.++ |.+++|.+.|++.+.   
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---  409 (451)
T 1pw4_A          333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---  409 (451)
T ss_dssp             HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            34444444332 33333333333333344445666788899887 6699999999999999 999999999999984   


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469          87 QAAWRVVFVAAAVVYLFSSTFYIFAA  112 (154)
Q Consensus        87 ~~~~~~~F~~~~~~~~i~~~~~~~~~  112 (154)
                       .+|+..|++.+++.+++.+..++..
T Consensus       410 -~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          410 -FGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             -SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence             6799999999999888887776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.42  E-value=3.7e-07  Score=74.59  Aligned_cols=87  Identities=11%  Similarity=-0.020  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccch---------HHHH
Q psy3469          25 TVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAW---------RVVF   94 (154)
Q Consensus        25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~---------~~~F   94 (154)
                      .+....+...+.+...+..++...|..| ++||++.|+.++..++|++++|.+.|.+.+..  ..+|         +..|
T Consensus       408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~--~~~~~~~~~~~~~~~~~  485 (524)
T 2xut_A          408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT--VTEQIVQTGMSVTAFQM  485 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH--HHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccccccccccccccHH
Confidence            3333344444445556778888999887 67999999999999999999999999998731  1123         3447


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q psy3469          95 VAAAVVYLFSSTFYIFAAS  113 (154)
Q Consensus        95 ~~~~~~~~i~~~~~~~~~~  113 (154)
                      ++.+++.+++.++++++.+
T Consensus       486 ~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          486 FFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             HHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888887777666553

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.38  E-value=4e-07  Score=73.73  Aligned_cols=84  Identities=11%  Similarity=0.021  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469          26 VGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS  104 (154)
Q Consensus        26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~  104 (154)
                      +....+.....+...+..++...|..| ++||++.|+.+...++|.+++|.+.|++.+     .++...|.+++.+.+++
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  464 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----KSEVAYFSYFGLGSVVL  464 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----SSTTHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHH
Confidence            333333344445545677889999887 669999999999999999999999999977     35778888888888888


Q ss_pred             HHHHHHhccC
Q psy3469         105 STFYIFAASG  114 (154)
Q Consensus       105 ~~~~~~~~~~  114 (154)
                      .++.+++.++
T Consensus       465 ~~~~~~~~~~  474 (491)
T 4aps_A          465 GIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHHH
Confidence            7776665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.22  E-value=3.6e-06  Score=67.95  Aligned_cols=77  Identities=9%  Similarity=-0.013  Sum_probs=60.8

Q ss_pred             hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--cccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469          41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP--TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ  117 (154)
Q Consensus        41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~--~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q  117 (154)
                      +..|.+..|+.| +.|+++.|+.+.+++++++++|.+...+.+...  ...++...|++.+++.+++.++.+++.++++.
T Consensus       389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            456788999998 669999999999999999999999887765210  11345567888899999998888888876654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.05  E-value=1.4e-05  Score=63.28  Aligned_cols=96  Identities=13%  Similarity=0.068  Sum_probs=65.0

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG   83 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~   83 (154)
                      +.++.+++++++.+.+ +.+. +..+.+..++.+...+..++...|..|++++.+.++.. .+.+++.++|.+.|++.+.
T Consensus       331 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          331 YALIAMALCLISAFAG-GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             HHHHHHHHHHHHHHCC-HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554 3333 33334444445555677888878877766888888877 7789999999999999984


Q ss_pred             cccccc-hHHHHHHHHHHHHHHHH
Q psy3469          84 KPTQAA-WRVVFVAAAVVYLFSST  106 (154)
Q Consensus        84 ~~~~~~-~~~~F~~~~~~~~i~~~  106 (154)
                          .+ ++..|++.+.+.++..+
T Consensus       408 ----~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          408 ----AGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             ----HTSSGGGGHHHHHHHHHHHH
T ss_pred             ----hcchHHHHHHHHHHHHHHHH
Confidence                44 88888877655554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.31  E-value=0.00015  Score=58.30  Aligned_cols=86  Identities=17%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc----cccchHHHHH
Q psy3469          21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFV   95 (154)
Q Consensus        21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~   95 (154)
                      +.+..++.-.+...+.|...+....++.|..| ++||...++.+....+|.++++.+...+.....    ....|+..+.
T Consensus       125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (491)
T 4gc0_A          125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA  204 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence            44444444455555566667778889999887 779999999999999999999988877654321    1245666666


Q ss_pred             HHHHHHHHHHH
Q psy3469          96 AAAVVYLFSST  106 (154)
Q Consensus        96 ~~~~~~~i~~~  106 (154)
                      ......++..+
T Consensus       205 ~~~~~~~~~~~  215 (491)
T 4gc0_A          205 SECIPALLFLM  215 (491)
T ss_dssp             TTHHHHHHHHH
T ss_pred             hhhhhhhhhhh
Confidence            55544444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.27  E-value=0.00024  Score=55.21  Aligned_cols=65  Identities=11%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHH
Q psy3469          30 TIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAA   98 (154)
Q Consensus        30 ~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~   98 (154)
                      .+...+.+...+...+..+|..|+++|++.|+.+...++|..++|.+.|.+.+.    .+|+..|.+.+
T Consensus       299 ~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----~~~~~~~~~~~  363 (375)
T 2gfp_A          299 ALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT----GQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccHHHHHHH
Confidence            333344555567778888998888899999999999999999999999999773    66777777643

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.21  E-value=0.00056  Score=54.48  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=37.8

Q ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469          53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST  106 (154)
Q Consensus        53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~  106 (154)
                      ++++...|..+..+.+|..++|.+.|++.+     .+|+..|++.+...++..+
T Consensus       134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-----~~~~~~f~~~~~~~~~~~~  182 (417)
T 2cfq_A          134 RRSNFEFGRARMFGCVGWALGASIVGIMFT-----INNQFVFWLGSGCALILAV  182 (417)
T ss_dssp             HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-----HCSHHHHTTTTTTTTTHHH
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHHHH-----hchhHHHHHHHHHHHHHHH
Confidence            346777788888889999999999999986     4689999877665444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	8e-05
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.003

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (90), Expect = 8e-05
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 5/118 (4%)

Query: 1   MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMS 60
             +     A  +   +  G      + ++ IG    G V             + AG    
Sbjct: 323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382

Query: 61  FTNCLANLAG-LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117
           FT     L G + A  I GY +        W   F+      + +    I    G+++
Sbjct: 383 FTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGGSILAVILLIVVMIGEKR 436

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 9   AVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLAN- 67
           +V ++ +S+      + +            +   FK        RF+  +     C    
Sbjct: 300 SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359

Query: 68  LAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116
           LA +   ++AG + +       ++  ++   +V L  +   +F  SG  
Sbjct: 360 LAMIFMSVLAGNMYE----SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.83
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.58
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=2.2e-09  Score=83.16  Aligned_cols=120  Identities=14%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             cchhHHHHHHHHhhcC---CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469           4 GQYGPAVCLVAASYTG---CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGY   79 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~   79 (154)
                      ++++.+++.++.++..   .+.+..++...+...+.+...+.....+.|..| ++|+.+.|+.+....+|..++|.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  174 (447)
T d1pw4a_          95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  174 (447)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence            4445555555554432   133334444444444556666777788999876 779999999999999999999999998


Q ss_pred             cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCC
Q psy3469          80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDA  126 (154)
Q Consensus        80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~  126 (154)
                      +.+.   ..+|++.|++.+.+.++..++.+++.++.+++...++.++
T Consensus       175 ~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (447)
T d1pw4a_         175 GMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE  218 (447)
T ss_dssp             HHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT
T ss_pred             Hhhh---hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh
Confidence            8763   3679999999998888888888888777776666555544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.2e-08  Score=76.93  Aligned_cols=107  Identities=15%  Similarity=0.153  Sum_probs=81.6

Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHH-HHHHHHHHhHhhhhhhhcc
Q psy3469           4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFT-NCLANLAGLLAPIIAGYVI   81 (154)
Q Consensus         4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~-~~~~~lg~~i~P~i~G~i~   81 (154)
                      +.++.+++.+.+.+.+ +.+..+....+...+.+...+..++.++|..| ++||++.|+. +....+|.+++|.+.|++.
T Consensus       295 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~  373 (417)
T d1pv7a_         295 AGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             HHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhhcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666665 66555555555555566667888889999877 6799999985 5667899999999999999


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469          82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD  115 (154)
Q Consensus        82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~  115 (154)
                      |.    .+|+..|++.+++.++..++..++.+++
T Consensus       374 ~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         374 ES----IGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HH----HCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HH----HCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            84    7899999999999888887777766444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=6.2e-08  Score=74.76  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHH-HhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469          23 YLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLA-GLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV  100 (154)
Q Consensus        23 ~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg-~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~  100 (154)
                      +..++++.+..+..+...+..+....|..| +.+|++.|+.+.+++++ .+++|.+.|++.+.    .+|+..|++.+++
T Consensus       344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~----~g~~~~~~~~~~~  419 (447)
T d1pw4a_         344 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGG  419 (447)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----SCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHHH
Confidence            333333333333344445667778889887 66999999999999885 56689999999985    6799999998888


Q ss_pred             HHHHHHHHHHhcc
Q psy3469         101 YLFSSTFYIFAAS  113 (154)
Q Consensus       101 ~~i~~~~~~~~~~  113 (154)
                      .+++.++..++..
T Consensus       420 ~~~~~~~~~~~~~  432 (447)
T d1pw4a_         420 SILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888776666653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0013  Score=48.22  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469          55 AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR  116 (154)
Q Consensus        55 ~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~  116 (154)
                      +....+........+..++|.+.|.+.+     .+|...+........+..+...++.++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         136 SNFEFGRARMFGCVGWALGASIVGIMFT-----INNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             hHHHHHHHhhhhcccccccccccccccc-----ccccccccchhhHHHHHHHHHHHHhcccc
Confidence            4556677788888899999999999987     45666666666666666655555554443