Psyllid ID: psy3491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MQSPSIYRTVNIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccHHccccccEEEEEEEcccccccccccccccccccccccccEEEccHHHHHEEHcccccccccccccccHcccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mqspsiyrtvnivdpvcpafvdapWLYFLLYSfssgasfssfkplqSALFMCESCHKTykakgslerhkkfecgkeaglqcpfcpykskhksnlKTHMAIRHQNGLHV
Flexible Loop (DISEMBL)
MQSPSIYRTVNIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAirhqnglhv
Low Complexity Region (SEG)
MQSPSIYRTVNIVDPVCPAFVDAPWlyfllysfssgasfssfKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV
Disordered region (IsUnstruct)
*****IYRTVNIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYK*********************
Disordered Region (DISOPRED)
*****************PAFVDAPW*************************MCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH******
Disordered Region (DISEMBL)
MQSPSIYRTVNIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV
Disordered Region (DISPRO)
**SPSIYRTVNIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ**L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSPSIYRTVNIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.481	0.066	0.480	2e-10
P42283	891	Longitudinals lacking pro	no	N/A	0.518	0.062	0.456	2e-10
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.361	0.044	0.6	7e-10
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.490	0.054	0.425	5e-08
Q6YND2	615	Zinc finger protein 653 O	yes	N/A	0.444	0.078	0.408	7e-05
Q9UL36	1845	Zinc finger protein 236 O	yes	N/A	0.740	0.043	0.352	0.0001
P17010	805	Zinc finger X-chromosomal	no	N/A	0.472	0.063	0.365	0.0002
O62836	800	Zinc finger X-chromosomal	no	N/A	0.472	0.063	0.365	0.0002
Q6B4Z5	801	Zinc finger Y-chromosomal	no	N/A	0.472	0.063	0.365	0.0002
Q52V16	801	Zinc finger Y-chromosomal	N/A	N/A	0.472	0.063	0.365	0.0002

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 52  CESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ 103
           C  C + YK K SL  H+K+ECGKE   QCPFC Y++K K ++  HM   H+
Sbjct: 687 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMHK 738

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 49  LFMCESCHKTYKAKGSLERHKKFECG-KEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
           ++ C  C K Y+ K +L RH+  ECG KE   QCP+CPYKSK + NL  H+   H +
Sbjct: 790 VYECRHCGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVHVRKHHTD 846

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 29/40 (72%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSK 89
           + C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K
Sbjct: 709 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCK 748

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECG-KEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           ++C  C K Y+ K +L RH+  ECG KE    CP+C YK+K + NL  H+   H
Sbjct: 903 YVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHVRKHH 956

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q6YND2|ZN653_MOUSE Zinc finger protein 653 OS=Mus musculus GN=Znf653 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
           F CE+C K++K K  LE H++   G E  LQC  C Y+ + +++L  HM
Sbjct: 528 FTCETCGKSFKRKNHLEVHRRTHTG-ETPLQCEICGYQCRQRASLNWHM 575

Transcriptional repressor. May repress NR5A1, PPARG, NR1H3, NR4A2, ESR1 and NR3C1 transcriptional activity.

Mus musculus (taxid: 10090)

>sp|Q9UL36|ZN236_HUMAN Zinc finger protein 236 OS=Homo sapiens GN=ZNF236 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 15   PVC-PAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFEC 73
            PVC  AF  A  L   + +  +G S SS KP    +F C++C K +     LERH +   
Sbjct: 1689 PVCRKAFKRATHLKEHMQTHQAGPSLSSQKP---RVFKCDTCEKAFAKPSQLERHSRIHT 1745

Query: 74   GKEAGLQCPFCPYKSKHKSNLKTHM 98
            G E    C  C      KS L+ HM
Sbjct: 1746 G-ERPFHCTLCEKAFNQKSALQVHM 1769

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P17010|ZFX_HUMAN Zinc finger X-chromosomal protein OS=Homo sapiens GN=ZFX PE=2 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 51  MCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           +C  C K ++    L++H +   G E   QC +C Y+S   SNLKTH+  +H
Sbjct: 549 ICVECGKGFRHPSELKKHMRIHTG-EKPYQCQYCEYRSADSSNLKTHVKTKH 599

Probable transcriptional activator.

Homo sapiens (taxid: 9606)

>sp|O62836|ZFX_BOVIN Zinc finger X-chromosomal protein OS=Bos taurus GN=ZFX PE=2 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 51  MCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           +C  C K ++    L++H +   G E   QC +C Y+S   SNLKTH+  +H
Sbjct: 544 ICVECGKGFRHPSELKKHMRIHTG-EKPYQCQYCEYRSADSSNLKTHVKTKH 594

Probable transcriptional activator.

Bos taurus (taxid: 9913)

>sp|Q6B4Z5|ZFY_PANTR Zinc finger Y-chromosomal protein OS=Pan troglodytes GN=ZFY PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 51  MCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           +C  C K ++    L++H +   G E   QC +C Y+S   SNLKTH+  +H
Sbjct: 545 ICVECGKGFRHPSELKKHMRIHTG-EKPYQCQYCEYRSADSSNLKTHIKTKH 595

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Pan troglodytes (taxid: 9598)

>sp|Q52V16|ZFY_GORGO Zinc finger Y-chromosomal protein OS=Gorilla gorilla gorilla GN=ZFY PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 51  MCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           +C  C K ++    L++H +   G E   QC +C Y+S   SNLKTH+  +H
Sbjct: 545 ICVECGKGFRHPSELKKHMRIHTG-EKPYQCQYCEYRSADSSNLKTHIKTKH 595

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Gorilla gorilla gorilla (taxid: 9595)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
45552567	771	longitudinals lacking, isoform W [Drosop	0.509	0.071	0.527	1e-12
16648060	331	GH08307p [Drosophila melanogaster]	0.509	0.166	0.527	6e-12
195120832	325	GI20188 [Drosophila mojavensis] gi|19390	0.537	0.178	0.534	7e-12
195425431	220	GK19011 [Drosophila willistoni] gi|19415	0.537	0.263	0.568	2e-11
195026424	319	GH20627 [Drosophila grimshawi] gi|193902	0.537	0.181	0.534	2e-11
195153473	175	GL17195 [Drosophila persimilis] gi|19411	0.574	0.354	0.516	2e-11
194757976	199	GF11102 [Drosophila ananassae] gi|190622	0.564	0.306	0.524	2e-11
195383676	685	GJ20138 [Drosophila virilis] gi|19414534	0.537	0.084	0.533	3e-10
158292853	634	AGAP005245-PG [Anopheles gambiae str. PE	0.5	0.085	0.481	1e-09
270003816	1844	hypothetical protein TcasGA2_TC003097 [T	0.407	0.023	0.571	2e-09

>gi|45552567|ref|NP_995806.1| longitudinals lacking, isoform W [Drosophila melanogaster] gi|29539421|dbj|BAC67593.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539461|dbj|BAC67613.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539501|dbj|BAC67633.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539541|dbj|BAC67653.1| Lola protein isoform Q [Drosophila melanogaster] gi|45445597|gb|AAS64876.1| longitudinals lacking, isoform W [Drosophila melanogaster]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
           + C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K++S+L+ HM  +H +
Sbjct: 709 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKYRSDLRKHMNQKHAD 763

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16648060|gb|AAL25295.1| GH08307p [Drosophila melanogaster]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
           + C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K++S+L+ HM  +H +
Sbjct: 269 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKYRSDLRKHMNQKHAD 323

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120832|ref|XP_002004925.1| GI20188 [Drosophila mojavensis] gi|193909993|gb|EDW08860.1| GI20188 [Drosophila mojavensis]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 45  LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           +  A + C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K+KS+L+ HM  +H
Sbjct: 257 IDDAKYACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKH 314

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425431|ref|XP_002061011.1| GK19011 [Drosophila willistoni] gi|194157096|gb|EDW71997.1| GK19011 [Drosophila willistoni]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%)

Query: 45  LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           L  A F C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K+KS+L+ HM  +H
Sbjct: 147 LDEAKFACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKH 204

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026424|ref|XP_001986253.1| GH20627 [Drosophila grimshawi] gi|193902253|gb|EDW01120.1| GH20627 [Drosophila grimshawi]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 45  LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
           +  A + C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K+KS+L+ HM  +H
Sbjct: 251 IDDAKYACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKH 308

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153473|ref|XP_002017650.1| GL17195 [Drosophila persimilis] gi|194113446|gb|EDW35489.1| GL17195 [Drosophila persimilis]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query: 45  LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
           L  + F C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K+KS+L+ HM  +H +
Sbjct: 107 LDDSKFACNVCGKTYKIKGSLKRHKNYECGVEPALKCPHCPHKCKYKSDLRKHMNQKHSD 166

Query: 105 GL 106
            +
Sbjct: 167 SV 168

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757976|ref|XP_001961238.1| GF11102 [Drosophila ananassae] gi|190622536|gb|EDV38060.1| GF11102 [Drosophila ananassae]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 44  PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ 103
           PL  + + C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K+KS+L+ HM  +H 
Sbjct: 131 PLDESKYACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKYKSDLRKHMNQKHA 190

Query: 104 N 104
           +
Sbjct: 191 D 191

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383676|ref|XP_002050552.1| GJ20138 [Drosophila virilis] gi|194145349|gb|EDW61745.1| GJ20138 [Drosophila virilis]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 45  LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMA--IRH 102
           +  A + C  C KTYK KGSL+RHK +ECG E  L+CP CP+K K+KS+L+ HM   +RH
Sbjct: 110 VDDAKYACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNHFVRH 169

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292853|ref|XP_314150.4| AGAP005245-PG [Anopheles gambiae str. PEST] gi|157017188|gb|EAA09485.4| AGAP005245-PG [Anopheles gambiae str. PEST]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ 103
           F C  C +TYK K SL  H+K+ECGKE   QCP+C Y++K K ++  HM   H+
Sbjct: 553 FACPDCGRTYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIGRHMERMHK 606

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003816|gb|EFA00264.1| hypothetical protein TcasGA2_TC003097 [Tribolium castaneum]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 36/56 (64%)

Query: 47   SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
            S LFMC  C KTY+ K SL RH +FECGKE    C FCP + KHK +LK H   RH
Sbjct: 945  SELFMCTKCTKTYRLKHSLTRHIRFECGKEPMYACRFCPRRFKHKYDLKVHEKSRH 1000

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.490	0.054	0.425	1.4e-07
UNIPROTKB|P80944	148	ZFX "Zinc finger X-chromosomal	0.472	0.344	0.365	2.1e-06
UNIPROTKB|Q29419	148	ZFY "Zinc finger Y-chromosomal	0.472	0.344	0.365	2.1e-06
ZFIN|ZDB-GENE-071116-3	469	znf653 "zinc finger protein 65	0.518	0.119	0.379	2.1e-06
ZFIN|ZDB-GENE-080220-38	333	zgc:175107 "zgc:175107" [Danio	0.490	0.159	0.392	4.2e-06
ZFIN|ZDB-GENE-050227-10	338	zgc:113348 "zgc:113348" [Danio	0.472	0.150	0.442	7.1e-06
UNIPROTKB|F1NSK0	616	ZBTB48 "Uncharacterized protei	0.509	0.089	0.375	1.1e-05
ZFIN|ZDB-GENE-110913-172	401	si:dkey-165b20.3 "si:dkey-165b	0.462	0.124	0.352	1.1e-05
ZFIN|ZDB-GENE-050208-787	199	si:dkey-15h8.11 "si:dkey-15h8.	0.527	0.286	0.379	1.2e-05
MGI|MGI:2140248	681	Zbtb48 "zinc finger and BTB do	0.509	0.080	0.375	1.2e-05

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 133 (51.9 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/54 (42%), Positives = 32/54 (59%)

Query:    50 FMCESCHKTYKAKGSLERHKKFECG-KEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
             ++C  C K Y+ K +L RH+  ECG KE    CP+C YK+K + NL  H+   H
Sbjct:   903 YVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHVRKHH 956

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P80944 ZFX "Zinc finger X-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query:    51 MCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
             +C  C K ++    L++H +   G E   QC +C Y+S   SNLKTH+  +H
Sbjct:    77 ICVECGKGFRHPSELKKHMRIHTG-EKPYQCQYCEYRSADSSNLKTHVKTKH 127

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q29419 ZFY "Zinc finger Y-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query:    51 MCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
             +C  C K ++    L++H +   G E   QC +C Y+S   SNLKTH+  +H
Sbjct:    77 ICVECGKGFRHPSELKKHMRIHTG-EKPYQCQYCEYRSADSSNLKTHVKTKH 127

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-071116-3 znf653 "zinc finger protein 653" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query:    50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH 107
             F+CE+C K++K K  LE H++   G E  LQC  C Y+ + +++L  HM  +H +  H
Sbjct:   382 FICETCGKSFKRKNHLEVHRRTHTG-ETPLQCEICGYQCRQRASLNWHMR-KHTSEAH 437

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080220-38 zgc:175107 "zgc:175107" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query:    50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG 105
             F C+ C K++  K +L+ H +   G E    CPFC     HK NLKTH  +R+  G
Sbjct:   109 FSCQQCGKSFSQKQNLKVHMRVHTG-EKPFSCPFCGQNFTHKGNLKTH--VRNHTG 161

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050227-10 zgc:113348 "zgc:113348" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 23/52 (44%), Positives = 28/52 (53%)

Query:    49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
             LF C SC K+Y  KG+LE H +F  G E    C  C      K++LK HM I
Sbjct:    87 LFTCISCGKSYTEKGALESHMRFHTG-EKPFACTLCGQSYTRKTDLKRHMRI 137

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1NSK0 ZBTB48 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query:    50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG 105
             F C  C KT++ + SL++H +   G E    C FC  +   K  L  H+A RHQ G
Sbjct:   421 FQCHLCGKTFRTQASLDKHNRTHTG-ERPFSCEFCEQRFTEKGPLLRHIASRHQEG 475

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-110913-172 si:dkey-165b20.3 "si:dkey-165b20.3" [Danio rerio (taxid:7955)]

 Score = 99 (39.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query:    50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
             +MC  C KT+   G L+RH++   G++   +C  C  +  H   LKTH  I
Sbjct:   346 YMCLECEKTFITAGDLKRHQRIHTGEKT-YKCSHCSKRFTHSRTLKTHERI 395

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-050208-787 si:dkey-15h8.11 "si:dkey-15h8.11" [Danio rerio (taxid:7955)]

 Score = 104 (41.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 22/58 (37%), Positives = 30/58 (51%)

Query:    50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH 107
             F C  C K++  K SL+RH     G E   +CP C  + ++  NLKTHM I  +   H
Sbjct:     9 FTCTQCGKSFSHKCSLKRHMLIHTG-ERPHKCPQCDMRFRYLGNLKTHMMIHTKEKPH 65

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:2140248 Zbtb48 "zinc finger and BTB domain containing 48" [Mus musculus (taxid:10090)]

 Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query:    50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG 105
             F C  C KT++ + SL++H +   G E    C FC  +   K  L  H+A RHQ G
Sbjct:   486 FQCHLCGKTFRTQASLDKHNRTHTG-ERPFSCEFCEQRFTEKGPLLRHVASRHQEG 540

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG2462|consensus	279		99.76
KOG2462|consensus	279		99.75
KOG3623|consensus	1007		99.4
KOG3623|consensus	1007		99.34
KOG3576|consensus	267		99.33
KOG3576|consensus	267		99.08
PHA02768	55	hypothetical protein; Provisional	99.03
PHA00733	128	hypothetical protein	99.03
KOG1074|consensus	958		98.94
KOG3608|consensus	467		98.82
KOG1074|consensus	958		98.78
PHA00616	44	hypothetical protein	98.75
KOG3608|consensus	467		98.6
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.58
PHA00732	79	hypothetical protein	98.49
PHA00616	44	hypothetical protein	98.43
KOG3993|consensus	500		98.4
PHA02768	55	hypothetical protein; Provisional	98.34
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.33
PLN03086	567	PRLI-interacting factor K; Provisional	98.27
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.24
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.09
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.09
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.04
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.97
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.96
PLN03086	567	PRLI-interacting factor K; Provisional	97.91
PHA00733	128	hypothetical protein	97.88
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.77
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.74
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.7
smart00355	26	ZnF_C2H2 zinc finger.	97.57
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.41
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.39
KOG3993|consensus	500		97.29
smart00355	26	ZnF_C2H2 zinc finger.	97.03
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.93
PHA00732	79	hypothetical protein	96.9
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.85
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.67
PRK04860	160	hypothetical protein; Provisional	96.63
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.49
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.23
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.07
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.05
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.01
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.89
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.8
KOG2893|consensus	341		93.32
PRK04860	160	hypothetical protein; Provisional	92.43
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	92.1
KOG2186|consensus	276		92.09
COG5048	467	FOG: Zn-finger [General function prediction only]	91.41
COG4049	65	Uncharacterized protein containing archaeal-type C	88.95
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	88.49
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	88.12
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	87.69
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	86.24
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	86.12
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	85.78
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	85.6
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	85.26
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	84.84
PRK06266	178	transcription initiation factor E subunit alpha; V	84.3
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	84.25
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.37
COG1592	166	Rubrerythrin [Energy production and conversion]	82.96
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	82.84
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	82.6
smart00531	147	TFIIE Transcription initiation factor IIE.	82.49
KOG1146|consensus	1406		82.46
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	81.87
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	81.73
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	81.36

>KOG2462|consensus

Probab=99.76  E-value=4e-19  Score=110.28  Aligned_cols=86  Identities=24%  Similarity=0.415  Sum_probs=55.6

Q ss_pred             cCCCCC-CCcChhHHHHHhhhcC-------CCCCcc--------ccccCCCceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          13 VDPVCP-AFVDAPWLYFLLYSFS-------SGASFS--------SFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        13 ~~~~c~-~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      .|++|. .+...+.|.-|++++.       .++.+.        .+.++|+|||.|..|+++|...++|+.|+++|.+.+
T Consensus       163 ~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K  242 (279)
T KOG2462|consen  163 SCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK  242 (279)
T ss_pred             cCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCc
Confidence            677777 6777777777766553       111211        123466777777777777777777777777777666


Q ss_pred             CCccCCCCccccCCchhHHHHHH
Q psy3491          77 AGLQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        77 ~~~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      + |.|..|+|.|...+.|.+|..
T Consensus       243 ~-~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  243 K-HQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             c-ccCcchhhHHHHHHHHHHhhh
Confidence            5 777777777777777777664

>KOG2462|consensus

Probab=99.75  E-value=1.3e-18  Score=107.97  Aligned_cols=97  Identities=20%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCC------------------CCccccccCCCceeeccchhhhccCchHHHHHHhH
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSG------------------ASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKF   71 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   71 (108)
                      .+.|+.|. .+....+|..|...+...                  .++.+|..++.-+++|.+||+.|.+..-|+.|+++
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRT  209 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRT  209 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccccc
Confidence            34889998 788888887775544322                  23335666677799999999999999999999999


Q ss_pred             HhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          72 ECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        72 ~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |+|+++ |.|+.|+|.|.-+++|+.|+++|.+.|.|.
T Consensus       210 HTGEKP-F~C~hC~kAFADRSNLRAHmQTHS~~K~~q  245 (279)
T KOG2462|consen  210 HTGEKP-FSCPHCGKAFADRSNLRAHMQTHSDVKKHQ  245 (279)
T ss_pred             ccCCCC-ccCCcccchhcchHHHHHHHHhhcCCcccc
Confidence            999988 999999999999999999999999999874

>KOG3623|consensus

Probab=99.40  E-value=1.1e-13  Score=95.82  Aligned_cols=91  Identities=22%  Similarity=0.419  Sum_probs=73.4

Q ss_pred             CccCccCCCCC-CCcChhHHHHHhhhcCCCCCcccc--ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491           8 RTVNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSF--KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus         8 ~~~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      ...|+-|+.|. .|.-...|..|+..+..+..-...  ...+.+.|+|..||++|..+-.|..|+++|.|+++ |.|+.|
T Consensus       237 ne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKP-feCpnC  315 (1007)
T KOG3623|consen  237 NEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKP-FECPNC  315 (1007)
T ss_pred             CCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCC-cCCccc
Confidence            35677899998 888888998998887665433222  22356779999999999999999999999999887 999999


Q ss_pred             ccccCCchhHHHHHH
Q psy3491          85 PYKSKHKSNLKTHMA   99 (108)
Q Consensus        85 ~~~f~~~~~l~~H~~   99 (108)
                      +|.|....++..|+.
T Consensus       316 kKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  316 KKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccccccCCccccccc
Confidence            999999888888864

>KOG3623|consensus

Probab=99.34  E-value=3.2e-13  Score=93.59  Aligned_cols=75  Identities=27%  Similarity=0.483  Sum_probs=55.9

Q ss_pred             cCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCc
Q psy3491          13 VDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHK   91 (108)
Q Consensus        13 ~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~   91 (108)
                      .|..|. +|...+.|..|-+-+           +|.+||+|.+|.++|..+-.|..|++.|.|+++ |.|+-|+|.|...
T Consensus       896 aCDqCDK~FqKqSSLaRHKYEH-----------sGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP-fQCdKClKRFSHS  963 (1007)
T KOG3623|consen  896 ACDQCDKAFQKQSSLARHKYEH-----------SGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP-FQCDKCLKRFSHS  963 (1007)
T ss_pred             hHHHHHHHHHhhHHHHHhhhhh-----------cCCCCcccchhhHhhhhhhhhhhhhhhccCCCc-chhhhhhhhcccc
Confidence            666666 666666666664433           677788888888888888888888888888776 8888888888888


Q ss_pred             hhHHHHHH
Q psy3491          92 SNLKTHMA   99 (108)
Q Consensus        92 ~~l~~H~~   99 (108)
                      .++..|+-
T Consensus       964 GSYSQHMN  971 (1007)
T KOG3623|consen  964 GSYSQHMN  971 (1007)
T ss_pred             cchHhhhc
Confidence            77777763

>KOG3576|consensus

Probab=99.33  E-value=1.7e-13  Score=82.38  Aligned_cols=81  Identities=21%  Similarity=0.365  Sum_probs=66.0

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      +.|-+|. .|.-...|..|++++           ...+.+.|..||+.|....+|.+|.++|++.++ |.|..|++.|.+
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kch-----------~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp-ykc~~c~kaftq  185 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKCH-----------SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP-YKCSLCEKAFTQ  185 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhhc-----------cHHHHHHHhhccCcccchhhhhhhhccccCccc-cchhhhhHHHHh
Confidence            4788888 788778888888877           345668888888888888888888888888776 888888888888


Q ss_pred             chhHHHHHHHhcCC
Q psy3491          91 KSNLKTHMAIRHQN  104 (108)
Q Consensus        91 ~~~l~~H~~~h~~~  104 (108)
                      +-+|..|.+..|+.
T Consensus       186 rcsleshl~kvhgv  199 (267)
T KOG3576|consen  186 RCSLESHLKKVHGV  199 (267)
T ss_pred             hccHHHHHHHHcCc
Confidence            88888888776664

>KOG3576|consensus

Probab=99.08  E-value=3.5e-11  Score=72.57  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=57.9

Q ss_pred             CCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +...|.|..|++.|.-...|.+|++.|...+. +.|..||+-|+-...|++|.|+|+|.+||.
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr-~lct~cgkgfndtfdlkrh~rthtgvrpyk  175 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR-HLCTFCGKGFNDTFDLKRHTRTHTGVRPYK  175 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHH-HHHhhccCcccchhhhhhhhccccCccccc
Confidence            45679999999999999999999999999888 999999999999999999999999999983

>PHA02768 hypothetical protein; Provisional

Probab=99.03  E-value=1.1e-10  Score=56.57  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=39.2

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHH
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLK   95 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~   95 (108)
                      .|.|+.||+.|...+.|..|++.|.  ++ +.|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~-~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TN-LKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--Cc-ccCCcccceecccceeE
Confidence            3899999999999999999999988  45 99999999999877653

>PHA00733 hypothetical protein

Probab=99.03  E-value=3.3e-10  Score=64.78  Aligned_cols=55  Identities=18%  Similarity=0.503  Sum_probs=49.3

Q ss_pred             CCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      +.+||.|..|++.|.....|..|++.+.  .+ +.|.+|++.|.....|.+|+...|+
T Consensus        70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h~--~~-~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         70 AVSPYVCPLCLMPFSSSVSLKQHIRYTE--HS-KVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCccCCCCCCcCCCHHHHHHHHhcCC--cC-ccCCCCCCccCCHHHHHHHHHHhcC
Confidence            4679999999999999999999998762  44 9999999999999999999988775

>KOG1074|consensus

Probab=98.94  E-value=1.5e-10  Score=81.45  Aligned_cols=58  Identities=26%  Similarity=0.510  Sum_probs=53.9

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      +++|..|.+.|...+.|+.|.+.|+++++ |+|.+||..|.++.+|+.|...|+...|+
T Consensus       353 khkCr~CakvfgS~SaLqiHlRSHTGERP-fqCnvCG~~FSTkGNLKvH~~rH~e~~p~  410 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRSHTGERP-FQCNVCGNRFSTKGNLKVHFQRHREKYPH  410 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhccCCCCC-eeecccccccccccceeeeeeeccccCCc
Confidence            57899999999999999999999999887 99999999999999999999988877654

>KOG3608|consensus

Probab=98.82  E-value=5.2e-09  Score=67.96  Aligned_cols=83  Identities=23%  Similarity=0.441  Sum_probs=62.7

Q ss_pred             CccC-ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCC--
Q psy3491           8 RTVN-IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPF--   83 (108)
Q Consensus         8 ~~~~-~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~--   83 (108)
                      +++| +.||.|. .....+.|..|++.-+          ...+||+|..|.+.+.+.++|.+|...|. +.. |.|..  
T Consensus       259 rHvn~ykCplCdmtc~~~ssL~~H~r~rH----------s~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~-y~C~h~~  326 (467)
T KOG3608|consen  259 RHVNCYKCPLCDMTCSSASSLTTHIRYRH----------SKDKPFKCDECDTRCVRESDLAKHVQVHS-KTV-YQCEHPD  326 (467)
T ss_pred             HhhhcccccccccCCCChHHHHHHHHhhh----------ccCCCccccchhhhhccHHHHHHHHHhcc-ccc-eecCCCC
Confidence            3444 4889998 7888888888887553          45789999999999999999999998776 344 67754  


Q ss_pred             CccccCCchhHHHHHHHhc
Q psy3491          84 CPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        84 C~~~f~~~~~l~~H~~~h~  102 (108)
                      |..++.+...+++|.+.++
T Consensus       327 C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  327 CHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             CcHHHHHHHHHHHHHHHhc
Confidence            6666666666777766555

>KOG1074|consensus

Probab=98.78  E-value=2.1e-09  Score=75.93  Aligned_cols=58  Identities=26%  Similarity=0.499  Sum_probs=54.7

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .+.|..||+.|...++|..|+++|.++++ |.|.+|++.|....+|+.|+.+|.+..+.
T Consensus       879 ~h~C~vCgk~FsSSsALqiH~rTHtg~KP-F~C~fC~~aFttrgnLKvHMgtH~w~q~~  936 (958)
T KOG1074|consen  879 AHVCNVCGKQFSSSAALEIHMRTHTGPKP-FFCHFCEEAFTTRGNLKVHMGTHMWVQPP  936 (958)
T ss_pred             hhhhccchhcccchHHHHHhhhcCCCCCC-ccchhhhhhhhhhhhhhhhhccccccCCC
Confidence            47899999999999999999999999998 99999999999999999999999998764

>PHA00616 hypothetical protein

Probab=98.75  E-value=4.9e-09  Score=48.51  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=15.4

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      |+|..||+.|...+.|..|++.+++..+ +.|+
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~-~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNK-LTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCc-ccee
Confidence            4455555555555555555554444433 4443

>KOG3608|consensus

Probab=98.60  E-value=1.3e-08  Score=66.11  Aligned_cols=90  Identities=20%  Similarity=0.365  Sum_probs=48.1

Q ss_pred             cCCCCC-CCcChhHHHHHhhhcCC-----------------CCCccccccCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          13 VDPVCP-AFVDAPWLYFLLYSFSS-----------------GASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        13 ~~~~c~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      .||.|. .|....-+..|++....                 .+.+.+|......-|.|+.|.......+.|..|++..+.
T Consensus       209 ACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs  288 (467)
T KOG3608|consen  209 ACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHS  288 (467)
T ss_pred             ecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhc
Confidence            688888 67777777666553321                 111112222223345555555555555555555554333


Q ss_pred             CCCCccCCCCccccCCchhHHHHHHHhc
Q psy3491          75 KEAGLQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        75 ~~~~~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      ...||+|+.|.+.+...+.|++|...|.
T Consensus       289 ~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  289 KDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             cCCCccccchhhhhccHHHHHHHHHhcc
Confidence            2223666666666666666666666544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.58  E-value=4.8e-08  Score=40.61  Aligned_cols=26  Identities=27%  Similarity=0.723  Sum_probs=21.8

Q ss_pred             HHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          64 SLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        64 ~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      +|..|++.|.++++ |.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~-~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP-YKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSS-EEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCC-CCCCCCcCeeCc
Confidence            47889999999887 999999988863

...

>PHA00732 hypothetical protein

Probab=98.49  E-value=6.1e-08  Score=50.89  Aligned_cols=45  Identities=24%  Similarity=0.490  Sum_probs=29.8

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHH
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      ||.|..|++.|.....|..|++.++.  + +.|+.|++.|.   .+..|.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~-~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--L-TKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--C-CccCCCCCEeC---Chhhhhc
Confidence            46777777777777777777764222  2 57777777776   3555653

>PHA00616 hypothetical protein

Probab=98.43  E-value=1.3e-07  Score=43.81  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=28.4

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ||+|..||+.|...++|.+|++.||+++++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~   30 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKL   30 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcc
Confidence            499999999999999999999999999985

>KOG3993|consensus

Probab=98.40  E-value=4.2e-08  Score=65.05  Aligned_cols=80  Identities=18%  Similarity=0.374  Sum_probs=60.0

Q ss_pred             cCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhc-----------------
Q psy3491          13 VDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECG-----------------   74 (108)
Q Consensus        13 ~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~-----------------   74 (108)
                      +|-.|. .+.+...|.+|. +.          .+-.-.|.|+.|++.|....+|..|+++|-.                 
T Consensus       269 iCqLCK~kYeD~F~LAQHr-C~----------RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~  337 (500)
T KOG3993|consen  269 ICQLCKEKYEDAFALAQHR-CP----------RIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVE  337 (500)
T ss_pred             HHHHHHHhhhhHHHHhhcc-CC----------eeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhh
Confidence            566666 566665655542 22          1222359999999999999999999998852                 


Q ss_pred             ----------------CCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          75 ----------------KEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        75 ----------------~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                                      +.. |.|..|++.|....-|+.|+.+|+..
T Consensus       338 ~rae~~ea~rsg~dss~gi-~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  338 TRAEVQEAERSGDDSSSGI-FSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhhhhhhccccCCcccCce-eecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                            122 88999999999999999999988864

>PHA02768 hypothetical protein; Provisional

Probab=98.34  E-value=3.3e-07  Score=44.46  Aligned_cols=24  Identities=21%  Similarity=0.533  Sum_probs=23.6

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|+.||+.|...++|..|+++|+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            899999999999999999999999

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.33  E-value=9.8e-07  Score=43.08  Aligned_cols=52  Identities=29%  Similarity=0.544  Sum_probs=38.6

Q ss_pred             eeeccchhhhccCchHHHHHHhHHh-cCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFEC-GKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~-~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      .|.|+.|++ ......|..|....+ .+...+.|++|...+.  .+|..|+..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            488999999 555678999966544 3333499999987544  489999988774

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.27  E-value=2e-06  Score=59.76  Aligned_cols=59  Identities=20%  Similarity=0.383  Sum_probs=33.9

Q ss_pred             cCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcccc
Q psy3491          13 VDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKS   88 (108)
Q Consensus        13 ~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f   88 (108)
                      .|+.|. .| ....+..|++.++             +++.|+ ||..+ ....|..|+..+.+.++ +.|..|++.+
T Consensus       455 ~C~~Cgk~f-~~s~LekH~~~~H-------------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kp-i~C~fC~~~v  514 (567)
T PLN03086        455 HCEKCGQAF-QQGEMEKHMKVFH-------------EPLQCP-CGVVL-EKEQMVQHQASTCPLRL-ITCRFCGDMV  514 (567)
T ss_pred             cCCCCCCcc-chHHHHHHHHhcC-------------CCccCC-CCCCc-chhHHHhhhhccCCCCc-eeCCCCCCcc
Confidence            677887 44 4566777776541             345555 65433 33555566555555554 6666666555

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.24  E-value=7.5e-07  Score=35.76  Aligned_cols=22  Identities=45%  Similarity=0.759  Sum_probs=14.3

Q ss_pred             ccCCCCccccCCchhHHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAI  100 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~  100 (108)
                      |.|+.|++.|.....|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.09  E-value=2e-06  Score=35.61  Aligned_cols=25  Identities=16%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             HHHHhhhcCCCCCccccccCCCceeeccchhhhccC
Q psy3491          26 LYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKA   61 (108)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~   61 (108)
                      |..|++.+           ++++||.|+.|++.|..
T Consensus         2 l~~H~~~H-----------~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTH-----------TGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHH-----------SSSSSEEESSSSEEESS
T ss_pred             HHHHhhhc-----------CCCCCCCCCCCcCeeCc
Confidence            45666655           78999999999999863

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.09  E-value=3e-06  Score=34.01  Aligned_cols=24  Identities=42%  Similarity=0.848  Sum_probs=15.5

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|++|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            457777777777777777777664

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.04  E-value=3.7e-06  Score=33.66  Aligned_cols=23  Identities=30%  Similarity=0.766  Sum_probs=20.8

Q ss_pred             eeccchhhhccCchHHHHHHhHH
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.97  E-value=4.1e-06  Score=39.75  Aligned_cols=31  Identities=29%  Similarity=0.563  Sum_probs=21.4

Q ss_pred             CCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          77 AGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        77 ~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .|-.|++|+..+.+..+|++|+++.|+.||-
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~~k~~   53 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHFKKPG   53 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTTTS--
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhcccCC
Confidence            3488899998888889999999888888863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.96  E-value=2.8e-06  Score=35.38  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=15.8

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|..|++.|.+...|..|++.|.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhc
Confidence            566666666666666666666554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.91  E-value=3.1e-05  Score=54.07  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=58.2

Q ss_pred             ccCCCCCCCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccC----------chHHHHHHhHHhcCCCCccC
Q psy3491          12 IVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKA----------KGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        12 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~----------~~~l~~h~~~~~~~~~~~~c   81 (108)
                      +.|| |........+..|+...           -..+++.|..|+..+..          ...|..|.... +.++ +.|
T Consensus       479 v~Cp-Cg~~~~R~~L~~H~~th-----------Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt-~~C  544 (567)
T PLN03086        479 LQCP-CGVVLEKEQMVQHQAST-----------CPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRT-APC  544 (567)
T ss_pred             ccCC-CCCCcchhHHHhhhhcc-----------CCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcc-eEc
Confidence            4788 88544566777776543           45689999999998852          34788998875 6677 999


Q ss_pred             CCCccccCCchhHHHHHHHhcC
Q psy3491          82 PFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        82 ~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      ..||+.+..+ .+..|+...|+
T Consensus       545 ~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        545 DSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             cccCCeeeeh-hHHHHHHHhhc
Confidence            9999998877 47888877665

>PHA00733 hypothetical protein

Probab=97.88  E-value=8e-06  Score=46.80  Aligned_cols=55  Identities=13%  Similarity=0.182  Sum_probs=42.3

Q ss_pred             CCceeeccchhhhccCchHHHHH--Hh---HHhcCCCCccCCCCccccCCchhHHHHHHHh
Q psy3491          46 QSALFMCESCHKTYKAKGSLERH--KK---FECGKEAGLQCPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h--~~---~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      ..+++.|..|...|.....|..+  ..   ...+.++ |.|..|++.|.+...|..|++.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP-y~C~~Cgk~Fss~s~L~~H~r~h   96 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP-YVCPLCLMPFSSSVSLKQHIRYT   96 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC-ccCCCCCCcCCCHHHHHHHHhcC
Confidence            45679999999888877666555  11   2223455 99999999999999999999865

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.77  E-value=1.1e-05  Score=33.48  Aligned_cols=26  Identities=35%  Similarity=0.830  Sum_probs=23.2

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ||.|..|++.|.....|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999987753

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.74  E-value=2.2e-05  Score=42.62  Aligned_cols=72  Identities=17%  Similarity=0.262  Sum_probs=16.6

Q ss_pred             cCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCc
Q psy3491          13 VDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHK   91 (108)
Q Consensus        13 ~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~   91 (108)
                      .|.+|. .|.+...+..|+...+.. .+.             . ...+.....+..+...... .. +.|..|++.|.+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~-~~~-------------~-~~~l~~~~~~~~~~~~~~~-~~-~~C~~C~~~f~s~   63 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGF-DIP-------------D-QKYLVDPNRLLNYLRKKVK-ES-FRCPYCNKTFRSR   63 (100)
T ss_dssp             ----------------------------------------------------------------SS-EEBSSSS-EESSH
T ss_pred             Ccccccccccccccccccccccccc-ccc-------------c-ccccccccccccccccccC-CC-CCCCccCCCCcCH
Confidence            478888 788888888887544321 111             0 0000111112222221111 23 7777777777777


Q ss_pred             hhHHHHHHHh
Q psy3491          92 SNLKTHMAIR  101 (108)
Q Consensus        92 ~~l~~H~~~h  101 (108)
                      ..|..|++.+
T Consensus        64 ~~l~~Hm~~~   73 (100)
T PF12756_consen   64 EALQEHMRSK   73 (100)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHcCc
Confidence            7777777653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.70  E-value=3.3e-05  Score=30.83  Aligned_cols=24  Identities=29%  Similarity=0.733  Sum_probs=19.3

Q ss_pred             eeccchhhhccCchHHHHHHhHHh
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      |.|+.|++.|.....|..|+..++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999988753

...

>smart00355 ZnF_C2H2 zinc finger

Probab=97.57  E-value=9.5e-05  Score=29.85  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=16.0

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            456677777777777777776543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.41  E-value=0.00058  Score=33.18  Aligned_cols=52  Identities=17%  Similarity=0.179  Sum_probs=37.7

Q ss_pred             CccCCCCCCCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHh
Q psy3491          11 NIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      .+.||+|....+...|..|....+..         +.+...|+.|...+.  .+|..|+...+
T Consensus         2 ~f~CP~C~~~~~~~~L~~H~~~~H~~---------~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKGFSESSLVEHCEDEHRS---------ESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCccCHHHHHHHHHhHCcC---------CCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            36799999656677888887766432         234689999998655  37888987654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.39  E-value=4.8e-05  Score=49.38  Aligned_cols=53  Identities=25%  Similarity=0.509  Sum_probs=42.6

Q ss_pred             CCceeeccc--hhhhccCchHHHHHHhHHh-------------------cCCCCccCCCCccccCCchhHHHHHH
Q psy3491          46 QSALFMCES--CHKTYKAKGSLERHKKFEC-------------------GKEAGLQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        46 ~~~~~~C~~--c~~~f~~~~~l~~h~~~~~-------------------~~~~~~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      +++||.|+.  |.+.|.+...|..|+.-.+                   .+++ |.|++|+|.++....|+.|..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KP-YrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP-YRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCc-eeccccchhhccCccceeccc
Confidence            469999975  9999999999998875322                   1354 999999999999888887754

>KOG3993|consensus

Probab=97.29  E-value=3.8e-05  Score=51.46  Aligned_cols=53  Identities=21%  Similarity=0.445  Sum_probs=46.0

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |.|..|...|.....|.+|+-....... |.|++|+|+|+-..+|..|.|=|..
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vE-YrCPEC~KVFsCPANLASHRRWHKP  320 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVE-YRCPECDKVFSCPANLASHRRWHKP  320 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEee-ecCCcccccccCchhhhhhhcccCC
Confidence            8999999999999999999765555456 9999999999999999999886643

>smart00355 ZnF_C2H2 zinc finger

Probab=97.03  E-value=0.00045  Score=27.74  Aligned_cols=24  Identities=29%  Similarity=0.735  Sum_probs=20.7

Q ss_pred             eeccchhhhccCchHHHHHHhHHh
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      +.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999988653

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.93  E-value=0.00081  Score=26.94  Aligned_cols=23  Identities=48%  Similarity=1.024  Sum_probs=12.6

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|+.|+.... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666665555 556666666655

>PHA00732 hypothetical protein

Probab=96.90  E-value=0.00077  Score=35.43  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=22.3

Q ss_pred             CccCCCCccccCCchhHHHHHHH-hc
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAI-RH  102 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~-h~  102 (108)
                      ||.|..|++.|.+..+|..|++. |.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~   26 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT   26 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC
Confidence            48999999999999999999985 44

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.85  E-value=0.0005  Score=27.79  Aligned_cols=22  Identities=18%  Similarity=0.514  Sum_probs=13.9

Q ss_pred             ccCCCCccccCCchhHHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAI  100 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~  100 (108)
                      |.|.+|++.|.+...+..|.+.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3566666666666666666643

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.67  E-value=0.0024  Score=30.46  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=22.8

Q ss_pred             CCceeeccchhhhccCchHHHHHHhHHhcCCC
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKKFECGKEA   77 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~   77 (108)
                      .+.|..|+.|+..+....+|..|+...++.++
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            46789999999999999999999988777554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.63  E-value=0.0021  Score=38.31  Aligned_cols=38  Identities=21%  Similarity=0.538  Sum_probs=31.7

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHK   91 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~   91 (108)
                      +|.|. |+.   ....+..|.+++.+.++ |.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~-YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAV-YRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCcc-EECCCCCceeEEe
Confidence            78998 986   56678899999999887 9999999887644

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.49  E-value=0.0018  Score=26.11  Aligned_cols=23  Identities=30%  Similarity=0.834  Sum_probs=19.5

Q ss_pred             eeccchhhhccCchHHHHHHhHH
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      |.|..|+..|.....+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57899999999999999988754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.23  E-value=0.0049  Score=24.56  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=17.1

Q ss_pred             eeccchhhhccCchHHHHHHhHHh
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      |.|+.|..... ...|..|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67899998887 888999988765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.07  E-value=0.0012  Score=27.26  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=14.8

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      |.|..|++.|.....+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            567777777777777766654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.05  E-value=0.0045  Score=33.36  Aligned_cols=25  Identities=28%  Similarity=0.708  Sum_probs=21.8

Q ss_pred             eeeccchhhhccCchHHHHHHhHHh
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      .+.|..|++.|.....|..|++.+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            6999999999999999999998754

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.01  E-value=0.0041  Score=40.71  Aligned_cols=59  Identities=22%  Similarity=0.404  Sum_probs=41.3

Q ss_pred             ccCCC--CC-CCcChhHHHHHhhhcCCCCCcccc-------c-cCCCceeeccchhhhccCchHHHHHHh
Q psy3491          12 IVDPV--CP-AFVDAPWLYFLLYSFSSGASFSSF-------K-PLQSALFMCESCHKTYKAKGSLERHKK   70 (108)
Q Consensus        12 ~~~~~--c~-~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~C~~c~~~f~~~~~l~~h~~   70 (108)
                      +.||+  |. ++.....|++|+.--++...+..-       . ....|||.|..|++.|.+.-.|..|+.
T Consensus       350 ykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         350 YKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            37876  66 788888999987644433333211       1 135689999999999999888877743

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.89  E-value=0.0091  Score=24.25  Aligned_cols=20  Identities=30%  Similarity=0.675  Sum_probs=12.1

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      ..|+.||+.| ..+.|.+|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4567777777 3345666654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.80  E-value=0.021  Score=24.75  Aligned_cols=21  Identities=14%  Similarity=0.521  Sum_probs=16.3

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      |.|.+|++.|.....+..|..
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             eEccccCCccCCHHHHHHHHC
Confidence            778888888887777777764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893|consensus

Probab=93.32  E-value=0.018  Score=36.38  Aligned_cols=49  Identities=22%  Similarity=0.458  Sum_probs=34.7

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      +|| |=.|++.|.....|.+|++.    +. |+|-+|.|.+-+...|..|-...|
T Consensus        10 kpw-cwycnrefddekiliqhqka----kh-fkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKILIQHQKA----KH-FKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             Cce-eeecccccchhhhhhhhhhh----cc-ceeeeehhhhccCCCceeehhhhh
Confidence            454 66788899999889988875    44 899999877666555655544333

>PRK04860 hypothetical protein; Provisional

Probab=92.43  E-value=0.085  Score=31.51  Aligned_cols=27  Identities=15%  Similarity=0.402  Sum_probs=22.9

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +|.|. |++   ....+.+|.+++.++++|.
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~Yr  145 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYR  145 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEE
Confidence            39998 986   7778899999999999873

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=92.10  E-value=0.12  Score=22.35  Aligned_cols=24  Identities=25%  Similarity=0.783  Sum_probs=16.3

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      |.|..||..+....            . ++.|++|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~-~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------A-PWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------C-CCcCcCCCC
Confidence            67888887665432            3 488888874

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=92.09  E-value=0.13  Score=32.77  Aligned_cols=54  Identities=24%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CccCCCCCCCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCC
Q psy3491          11 NIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEA   77 (108)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~   77 (108)
                      .|.|.+|.....++.+..|+..-           .+ .-|.|..|++.|.. .++..|....+....
T Consensus         3 ~FtCnvCgEsvKKp~vekH~srC-----------rn-~~fSCIDC~k~F~~-~sYknH~kCITEaQK   56 (276)
T KOG2186|consen    3 FFTCNVCGESVKKPQVEKHMSRC-----------RN-AYFSCIDCGKTFER-VSYKNHTKCITEAQK   56 (276)
T ss_pred             EEehhhhhhhccccchHHHHHhc-----------cC-CeeEEeeccccccc-chhhhhhhhcchHHH
Confidence            45666666555555555554322           11 34777777777766 345666655554444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.41  E-value=0.029  Score=37.61  Aligned_cols=58  Identities=19%  Similarity=0.449  Sum_probs=50.6

Q ss_pred             ceeeccchhhhccCchHHHHHHh--HHhcC--CCCccCC--CCccccCCchhHHHHHHHhcCCCC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKK--FECGK--EAGLQCP--FCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~--~~~~~--~~~~~c~--~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      .++.|..|...|.....+..|.+  .|.+.  .+ +.|+  .|++.|.....+..|..+|.+-.+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP-FSCPYSLCGKLFSRNDALKRHILLHTSISP  351 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCc-eeeeccCCCccccccccccCCcccccCCCc
Confidence            46889999999999999999999  78887  55 9999  799999999999999988887654

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.95  E-value=0.38  Score=23.43  Aligned_cols=31  Identities=16%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ..|+.-+.|+-|+..|....+...|..-.++
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            3466678899999999988888888765444

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=88.49  E-value=0.15  Score=31.96  Aligned_cols=26  Identities=23%  Similarity=0.520  Sum_probs=16.5

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      |.|.+|+|.|.-..-+.+|+..-|.+
T Consensus        78 ~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   78 WRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             EEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             ECCCCCCcccCChHHHHHHHhhcCHH
Confidence            77777777777777777777665543

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=88.12  E-value=0.3  Score=21.66  Aligned_cols=34  Identities=21%  Similarity=0.672  Sum_probs=19.3

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccC
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSK   89 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~   89 (108)
                      -.|+.|+..|.-..+     +...+... ..|..|+..|.
T Consensus         3 i~CP~C~~~f~v~~~-----~l~~~~~~-vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDD-----KLPAGGRK-VRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHH-----HcccCCcE-EECCCCCcEee
Confidence            357777777765542     11122344 77777776653

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=87.69  E-value=0.27  Score=21.40  Aligned_cols=25  Identities=28%  Similarity=0.747  Sum_probs=16.7

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      .|.|..||..+...             .+|..|++|+.
T Consensus         2 ~~~C~~CG~i~~g~-------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE-------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC-------------cCCCcCcCCCC
Confidence            47888998665332             23478999874

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=86.24  E-value=0.37  Score=27.91  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=13.4

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ..|-+||+.|..-   ++|.+.|||-.
T Consensus        73 i~clecGk~~k~L---krHL~~~~glt   96 (132)
T PF05443_consen   73 IICLECGKKFKTL---KRHLRTHHGLT   96 (132)
T ss_dssp             EE-TBT--EESBH---HHHHHHTT-S-
T ss_pred             eEEccCCcccchH---HHHHHHccCCC
Confidence            6777788776653   78888777643

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>smart00614 ZnF_BED BED zinc finger

Probab=86.12  E-value=0.71  Score=21.80  Aligned_cols=21  Identities=33%  Similarity=0.741  Sum_probs=12.1

Q ss_pred             ccCCCCccccCCc-----hhHHHHHH
Q psy3491          79 LQCPFCPYKSKHK-----SNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~-----~~l~~H~~   99 (108)
                      ..|..|++.+...     ++|.+|+.
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            4566666655332     46666666

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=85.78  E-value=0.42  Score=21.09  Aligned_cols=33  Identities=15%  Similarity=0.424  Sum_probs=18.6

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcccc
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKS   88 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f   88 (108)
                      ..|+.|+..|.-....     ....... ..|..|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g~~-v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKGRK-VRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCCcE-EECCCCCCEe
Confidence            3577777777655432     1122234 7777777665

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=85.60  E-value=0.43  Score=28.44  Aligned_cols=34  Identities=18%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      ..-|.|+.|+..|+....+.         .. |.|+.||.....
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~---------~~-F~Cp~Cg~~L~~  140 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAME---------LN-FTCPRCGAMLDY  140 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHH---------cC-CcCCCCCCEeee
Confidence            44589999998888776653         24 999999987543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=85.26  E-value=0.46  Score=20.95  Aligned_cols=33  Identities=15%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcccc
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKS   88 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f   88 (108)
                      ..|+.|+..|.-..+..     ...... ..|+.|+..|
T Consensus         3 ~~CP~C~~~~~v~~~~~-----~~~~~~-v~C~~C~~~~   35 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL-----GANGGK-VRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEEEeCHHHc-----CCCCCE-EECCCCCCEE
Confidence            46777777765544321     111123 6777777665

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=84.84  E-value=0.93  Score=22.41  Aligned_cols=32  Identities=22%  Similarity=0.506  Sum_probs=19.5

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      .|.|+.||+.-.....     +...-..+ |.|+.||-
T Consensus        27 ~F~CPnCGe~~I~Rc~-----~CRk~g~~-Y~Cp~CGF   58 (61)
T COG2888          27 KFPCPNCGEVEIYRCA-----KCRKLGNP-YRCPKCGF   58 (61)
T ss_pred             EeeCCCCCceeeehhh-----hHHHcCCc-eECCCcCc
Confidence            5999999966544321     11111244 99999973

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=84.30  E-value=0.51  Score=28.72  Aligned_cols=34  Identities=24%  Similarity=0.697  Sum_probs=25.2

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      ..-|.|+.|+..|+....+.         .. |.|+.||..+..
T Consensus       115 ~~~Y~Cp~C~~rytf~eA~~---------~~-F~Cp~Cg~~L~~  148 (178)
T PRK06266        115 NMFFFCPNCHIRFTFDEAME---------YG-FRCPQCGEMLEE  148 (178)
T ss_pred             CCEEECCCCCcEEeHHHHhh---------cC-CcCCCCCCCCee
Confidence            34589999998887765442         24 999999987544

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=84.25  E-value=0.14  Score=30.42  Aligned_cols=15  Identities=20%  Similarity=0.428  Sum_probs=10.8

Q ss_pred             eeccchhhhccCchH
Q psy3491          50 FMCESCHKTYKAKGS   64 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~   64 (108)
                      ++|+.||..|.....
T Consensus        29 ~~c~~c~~~f~~~e~   43 (154)
T PRK00464         29 RECLACGKRFTTFER   43 (154)
T ss_pred             eeccccCCcceEeEe
Confidence            778888888776543

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.37  E-value=0.79  Score=25.61  Aligned_cols=30  Identities=23%  Similarity=0.541  Sum_probs=20.2

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCc
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHK   91 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~   91 (108)
                      ..|+.||..|.-   |        + +.|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYD---L--------n-k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYD---L--------N-KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhcc---C--------C-CCCccCCCCCCccCcc
Confidence            678888877643   2        1 2348888888877654

The function of members of this family is unknown.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=82.96  E-value=0.77  Score=27.67  Aligned_cols=24  Identities=38%  Similarity=0.789  Sum_probs=18.0

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      -|.|++||..+             .+ .+|-.|++||-
T Consensus       134 ~~vC~vCGy~~-------------~g-e~P~~CPiCga  157 (166)
T COG1592         134 VWVCPVCGYTH-------------EG-EAPEVCPICGA  157 (166)
T ss_pred             EEEcCCCCCcc-------------cC-CCCCcCCCCCC
Confidence            69999998543             34 44699999984

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=82.84  E-value=0.41  Score=22.73  Aligned_cols=30  Identities=17%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      -|.|..||..|.....+.      . ... ..|+.||.
T Consensus         5 ey~C~~Cg~~fe~~~~~~------~-~~~-~~CP~Cg~   34 (52)
T TIGR02605         5 EYRCTACGHRFEVLQKMS------D-DPL-ATCPECGG   34 (52)
T ss_pred             EEEeCCCCCEeEEEEecC------C-CCC-CCCCCCCC
Confidence            378999998886543221      1 233 67999885

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.60  E-value=1.4  Score=20.05  Aligned_cols=22  Identities=36%  Similarity=0.621  Sum_probs=12.4

Q ss_pred             ccCCCCccccCC----chhHHHHHHH
Q psy3491          79 LQCPFCPYKSKH----KSNLKTHMAI  100 (108)
Q Consensus        79 ~~c~~C~~~f~~----~~~l~~H~~~  100 (108)
                      ..|..|++.+..    .+.|.+|++.
T Consensus        17 a~C~~C~~~~~~~~~~ts~l~~HL~~   42 (45)
T PF02892_consen   17 AKCKYCGKVIKYSSGGTSNLKRHLKK   42 (45)
T ss_dssp             EEETTTTEE-----SSTHHHHHHHHH
T ss_pred             EEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence            677777766554    3567777643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=82.49  E-value=1  Score=26.49  Aligned_cols=39  Identities=18%  Similarity=0.456  Sum_probs=25.5

Q ss_pred             CCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccC
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSK   89 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~   89 (108)
                      ...-|.|+.|+..|.....+.    ....... |.|+.||....
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~----~~d~~~~-f~Cp~Cg~~l~  134 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQ----LLDMDGT-FTCPRCGEELE  134 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHH----hcCCCCc-EECCCCCCEEE
Confidence            344699999998887544322    1112344 99999997653

>KOG1146|consensus

Probab=82.46  E-value=0.93  Score=35.54  Aligned_cols=52  Identities=23%  Similarity=0.472  Sum_probs=43.1

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhc-------------------------CCCCccCCCCccccCCchhHHHHHH
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECG-------------------------KEAGLQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~-------------------------~~~~~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      .+.+.|+.|+..|.....|..|++..+.                         .+ +|.|..|...+....+|..|+.
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~-p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK-PYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC-cccceeeeeeeecchHHHHHHH
Confidence            3679999999999999999999987221                         23 4999999999999999999976

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=81.87  E-value=0.47  Score=21.17  Aligned_cols=30  Identities=23%  Similarity=0.571  Sum_probs=19.6

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      .|.|..||..|.......      . ... ..|+.||.
T Consensus         5 ~y~C~~Cg~~fe~~~~~~------~-~~~-~~CP~Cg~   34 (41)
T smart00834        5 EYRCEDCGHTFEVLQKIS------D-DPL-ATCPECGG   34 (41)
T ss_pred             EEEcCCCCCEEEEEEecC------C-CCC-CCCCCCCC
Confidence            478999998886543321      1 233 77888886

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR00622 ssl1 transcription factor ssl1

Probab=81.73  E-value=2  Score=24.14  Aligned_cols=84  Identities=12%  Similarity=0.189  Sum_probs=46.2

Q ss_pred             cCCCCC-CCcChhHHHHHhhhcCCCCCccc--cccC--CCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccc
Q psy3491          13 VDPVCP-AFVDAPWLYFLLYSFSSGASFSS--FKPL--QSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYK   87 (108)
Q Consensus        13 ~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~   87 (108)
                      .||+|. .+...+.|...   ++.-..+..  ....  ....-.|-.|...|........-.  ...... |.|+.|...
T Consensus        17 ~CpiCgLtLVss~HLARS---yHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~--~~~~~~-y~C~~C~~~   90 (112)
T TIGR00622        17 ECPICGLTLILSTHLARS---YHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDE--LKDSHR-YVCAVCKNV   90 (112)
T ss_pred             cCCcCCCEEeccchHHHh---hhccCCCcccccccccccCCCCcccCcCCCCCCcccccccc--cccccc-eeCCCCCCc
Confidence            789998 77777777541   111111110  0000  111234888888886543111000  112234 999999999


Q ss_pred             cCCchhHHHHHHHhc
Q psy3491          88 SKHKSNLKTHMAIRH  102 (108)
Q Consensus        88 f~~~~~l~~H~~~h~  102 (108)
                      |--.-.+-.|..+|.
T Consensus        91 FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        91 FCVDCDVFVHESLHC  105 (112)
T ss_pred             cccccchhhhhhccC
Confidence            988877777776654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=81.36  E-value=1.7  Score=17.59  Aligned_cols=20  Identities=25%  Similarity=0.690  Sum_probs=13.7

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      ..|++|++.+ ....+..|..
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            4678888776 5556777765

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-04

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 50  FMCESCHKTYKAKGSLERHKKF--ECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
             CE C  T + K SL  H++   E        C FC  + +   ++  H +  H
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
             C  C  +  +K +L  H++  C  +   +C +C + +K  SNL  HM  
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCT-DRPFKCNYCSFDTKQPSNLSKHMKK 59

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 34.7 bits (79), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
           ++CE C    K    L++H +          C +C +  K K NL  HM  
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTD-VRPYHCTYCNFSFKTKGNLTKHMKS 51

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 34.4 bits (80), Expect = 8e-04
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAG-LQCPFCPYKSKHKSNLKTHMAIRH 102
           + C  CH  +   G+++ H   +  +      CP C      KS+L  H+  +H
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.83
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.76
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.75
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.75
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.75
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.72
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.72
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.71
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.71
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.71
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.71
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.71
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.7
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.69
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.68
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.68
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.67
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.67
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.65
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.63
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.63
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.63
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.62
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.62
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.62
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.6
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.6
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.59
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.59
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.59
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.58
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.57
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.56
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.55
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.54
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.54
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.54
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.53
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.53
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.53
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.53
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.52
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.51
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.5
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.49
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.48
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.47
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.46
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.42
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.41
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.4
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.39
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.38
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.35
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.35
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.34
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.28
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.26
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.22
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.19
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.19
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.18
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.18
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.18
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.18
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.18
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.17
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.16
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.15
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.15
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.14
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.14
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.13
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.12
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.12
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.12
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.12
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.12
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.11
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.11
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.11
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.1
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.09
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.09
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.08
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.05
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.05
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.03
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.02
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.02
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.02
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.01
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.01
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.0
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.98
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.97
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.97
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.96
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.96
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.96
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.95
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.94
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.93
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.93
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.92
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.9
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.9
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.89
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.89
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.89
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.87
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.87
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.86
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.86
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.86
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.81
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.79
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.78
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.75
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.74
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.73
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.73
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.72
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.72
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.72
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.72
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.72
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.71
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.7
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.68
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.68
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.67
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.65
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.65
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.64
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.63
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.62
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.62
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.61
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.61
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.6
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.58
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.58
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.56
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.55
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.55
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.55
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.54
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.9
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.47
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.45
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.45
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.44
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.43
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.43
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.41
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.4
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.39
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.39
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.37
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.37
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.37
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.37
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.37
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.33
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.66
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.31
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.29
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.62
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.28
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.6
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.24
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.22
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.54
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.2
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.2
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.18
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.14
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.04
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.75
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.39
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.63
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.85
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.66
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.66
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.14
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	94.02
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.62
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.03
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	92.84
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	91.78
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.04
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	88.36
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	87.45
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	86.05
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	84.4
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	84.1

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.83  E-value=5.7e-21  Score=109.26  Aligned_cols=84  Identities=17%  Similarity=0.257  Sum_probs=78.4

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      +.|++|. .|.....|..|++++           ++++||.|..|++.|.....|..|+++|.++++ |.|++|++.|..
T Consensus        23 y~C~~C~k~F~~~~~L~~H~~~H-----------~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~   90 (133)
T 2lt7_A           23 YICIVCKRSYVCLTSLRRHFNIH-----------SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQCLACGKSFIN   90 (133)
T ss_dssp             EEETTTCCEESCHHHHHHHHHHH-----------HCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC-EEESSSCCEESS
T ss_pred             eECCCCCCCcCCHHHHHHHHHHc-----------CCCCCeeCCccCeecccccchhhhccccCCCcc-ccCCCCCCCcCC
Confidence            5899999 899999999998866           577899999999999999999999999999887 999999999999


Q ss_pred             chhHHHHHHHhcCCCCC
Q psy3491          91 KSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        91 ~~~l~~H~~~h~~~k~~  107 (108)
                      ...|..|+++||+++|+
T Consensus        91 ~~~L~~H~~~hh~~~p~  107 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQDPS  107 (133)
T ss_dssp             HHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHhHHhcCCCCC
Confidence            99999999999998874

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.83  E-value=5.6e-21  Score=95.22  Aligned_cols=58  Identities=26%  Similarity=0.591  Sum_probs=55.2

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ++||.|..||+.|.....|..|+++|.++++ |.|.+||+.|...+.|.+|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRP-RSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCC-EECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcC-eECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999887 999999999999999999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=1.9e-19  Score=98.86  Aligned_cols=86  Identities=16%  Similarity=0.368  Sum_probs=78.8

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccC
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSK   89 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~   89 (108)
                      .+.|++|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.
T Consensus        17 ~~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~   84 (106)
T 2ee8_A           17 EFICKFCGRHFTKSYNLLIHERTH-----------TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFC   84 (106)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHHHH-----------CCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT-TSCSSSCCCCS
T ss_pred             CeECCCCCCccCCHHHHHHHHHHc-----------CCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC-eECCCcCCccc
Confidence            35899999 899999999998765           456789999999999999999999999998887 99999999999


Q ss_pred             CchhHHHHHHHhcCCCCCC
Q psy3491          90 HKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        90 ~~~~l~~H~~~h~~~k~~~  108 (108)
                      ....|..|+++|+++++|.
T Consensus        85 ~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           85 QSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             SHHHHHHHHHHTTSCCCCC
T ss_pred             CHHHHHHHHHHhCCCCCCc
Confidence            9999999999999999874

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.8e-18  Score=93.31  Aligned_cols=85  Identities=20%  Similarity=0.406  Sum_probs=77.2

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccC
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSK   89 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~   89 (108)
                      .+.|++|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~   75 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRCH-----------TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASR   75 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGC-----------CCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC-EECSSSSCEES
T ss_pred             CeECCCCCCccCCHHHHHHHHHhc-----------CCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCCccC
Confidence            46899999 899999999998765           456789999999999999999999999998777 99999999999


Q ss_pred             CchhHHHHHHHhcCCCCC
Q psy3491          90 HKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        90 ~~~~l~~H~~~h~~~k~~  107 (108)
                      ....|..|+++|+++++.
T Consensus        76 ~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           76 NSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             SHHHHHHHHTTCCSCCCC
T ss_pred             CHHHHHHHHHHhcCCCCC
Confidence            999999999999998753

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.76  E-value=1.1e-18  Score=91.45  Aligned_cols=80  Identities=21%  Similarity=0.392  Sum_probs=72.7

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      +.|++|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|..
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~   69 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIH-----------SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQ   69 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHH-----------HTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC-EECTTTSCEESS
T ss_pred             ccCCCCcccccCchhHHHHHHHc-----------CCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC-CcCCCcchhhCC
Confidence            4699999 899999999998865           456789999999999999999999999999887 999999999999


Q ss_pred             chhHHHHHHHhcC
Q psy3491          91 KSNLKTHMAIRHQ  103 (108)
Q Consensus        91 ~~~l~~H~~~h~~  103 (108)
                      ...|.+|+++|+|
T Consensus        70 ~~~l~~H~~~H~g   82 (82)
T 2kmk_A           70 SSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             hHHHHHHHHhhCC
Confidence            9999999999975

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.75  E-value=1.5e-18  Score=92.55  Aligned_cols=83  Identities=19%  Similarity=0.368  Sum_probs=73.8

Q ss_pred             CccCC--CCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccc
Q psy3491          11 NIVDP--VCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYK   87 (108)
Q Consensus        11 ~~~~~--~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~   87 (108)
                      .+.|+  .|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~   71 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIH-----------TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRK   71 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHH-----------HCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCE
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHh-----------CCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC-ccCCCCCch
Confidence            35787  599 899999999998765           456789999999999999999999999999887 999999999


Q ss_pred             cCCchhHHHHHHHhcCCC
Q psy3491          88 SKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        88 f~~~~~l~~H~~~h~~~k  105 (108)
                      |.....|..|+++|++++
T Consensus        72 f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           72 FARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             ESSHHHHHHHHGGGGC--
T ss_pred             hCCHHHHHHHHHHhcccC
Confidence            999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.75  E-value=8.9e-19  Score=105.04  Aligned_cols=95  Identities=16%  Similarity=0.359  Sum_probs=65.3

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCcc---------------cc--ccCCCceeeccchhhhccCchHHHHHHhHHh
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFS---------------SF--KPLQSALFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      +.|++|. .|.....|..|+..+.....+.               .|  .+.++++|.|..|++.|.....|..|++.|.
T Consensus        78 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  157 (190)
T 2i13_A           78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT  157 (190)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             ccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            4677776 6666667666665432211111               11  2246778999999999999888999998888


Q ss_pred             cCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          74 GKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        74 ~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      +.++ |.|.+|++.|.....|..|+++|++++||
T Consensus       158 ~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          158 GEKP-YKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             CCCC-EECTTTCCEESSHHHHHHHHTTC------
T ss_pred             CCCC-eECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            8776 99999999999999999999999988886

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=89.08  Aligned_cols=63  Identities=25%  Similarity=0.555  Sum_probs=59.6

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ..++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|.+|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS-EECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC-EECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4577899999999999999999999999999877 99999999999999999999999999997

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=6.1e-18  Score=87.98  Aligned_cols=65  Identities=18%  Similarity=0.467  Sum_probs=60.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ...++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS-EECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC-eeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            34577899999999999999999999999998777 999999999999999999999999999985

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.72  E-value=2.1e-17  Score=92.81  Aligned_cols=63  Identities=24%  Similarity=0.437  Sum_probs=50.4

Q ss_pred             CCCceeeccc--hhhhccCchHHHHHHhHHhcCCCCccCC--CCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          45 LQSALFMCES--CHKTYKAKGSLERHKKFECGKEAGLQCP--FCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        45 ~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~--~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .++++|.|..  |++.|.....|..|++.|.++++ |.|+  .|++.|.+...|.+|+++|++++++.
T Consensus        58 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             SCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC-CCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc-eECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            5677899975  99999999999999999998777 9995  59999999999999999999988763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.71  E-value=1.9e-17  Score=92.27  Aligned_cols=85  Identities=19%  Similarity=0.405  Sum_probs=73.5

Q ss_pred             CccCCC--CC-CCcChhHHHHHhhhcCCCCCccccccCCCceeecc--chhhhccCchHHHHHHhHHhcCCCCccCCCCc
Q psy3491          11 NIVDPV--CP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCE--SCHKTYKAKGSLERHKKFECGKEAGLQCPFCP   85 (108)
Q Consensus        11 ~~~~~~--c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~   85 (108)
                      .+.|++  |. .|.....|..|++.+           .++++|.|.  .|++.|.....|..|++.|.+.++ |.|.+|+
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~   73 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRKH-----------TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQ   73 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHHH-----------HTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC-EECTTTC
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHhh-----------CCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC-ccCCccC
Confidence            468886  99 899999999998765           456789998  799999999999999999888776 9999999


Q ss_pred             cccCCchhHHHHHHHhcCCCCC
Q psy3491          86 YKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        86 ~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      +.|.....|..|+++|+++++|
T Consensus        74 ~~f~~~~~l~~H~~~h~~~~~~   95 (119)
T 2jp9_A           74 RKFSRSDHLKTHTRTHTGEKPF   95 (119)
T ss_dssp             CEESCHHHHHHHHHHHHTCCCE
T ss_pred             chhCCHHHHHHHHHHhcCCCCe
Confidence            9999999999999999998876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.71  E-value=7.2e-18  Score=98.10  Aligned_cols=97  Identities=21%  Similarity=0.348  Sum_probs=74.3

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCC------------------cc------c--cccCCCceeeccc--hhhhccC
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGAS------------------FS------S--FKPLQSALFMCES--CHKTYKA   61 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~------------------~~------~--~~~~~~~~~~C~~--c~~~f~~   61 (108)
                      .+.|+.|. .|.....|..|++..+....                  +.      .  ..+.++++|.|..  |++.|..
T Consensus        25 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  104 (155)
T 2rpc_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR  104 (155)
T ss_dssp             SSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESC
T ss_pred             ccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCC
Confidence            35788888 78888888888765222111                  00      0  1224677899987  9999999


Q ss_pred             chHHHHHHhHHhcCCCCccCCC--CccccCCchhHHHHHHHhcCCCCCC
Q psy3491          62 KGSLERHKKFECGKEAGLQCPF--CPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        62 ~~~l~~h~~~~~~~~~~~~c~~--C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ...|..|++.|.+.++ |.|.+  |++.|.....|.+|+++|+++++|.
T Consensus       105 ~~~L~~H~~~h~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~  152 (155)
T 2rpc_A          105 SENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP  152 (155)
T ss_dssp             HHHHHHHHTTTCSSCS-BCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSC
T ss_pred             HHHHHHHHHhhCCCCC-ccCCCCCCCCccCCHHHHHHHHHHhcCCCCCC
Confidence            9999999999888776 99986  9999999999999999999999884

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.7e-17  Score=84.77  Aligned_cols=63  Identities=24%  Similarity=0.522  Sum_probs=59.0

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      +.++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|.+|+++|++++|.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS-EECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-EeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4578899999999999999999999999988777 99999999999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=6.3e-17  Score=87.00  Aligned_cols=83  Identities=18%  Similarity=0.313  Sum_probs=72.7

Q ss_pred             cCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcC--CCCccCCCCcc
Q psy3491          10 VNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGK--EAGLQCPFCPY   86 (108)
Q Consensus        10 ~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~--~~~~~c~~C~~   86 (108)
                      ..+.|++|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.+.  ++ |.|.+|++
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~C~~C~~   73 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSH-----------SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YICQSCGK   73 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHS-----------CSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSS-BCCSSSCC
T ss_pred             CCeECCCCCCccCChHHHHHHHHhc-----------CCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCc-eECCCccc
Confidence            346899999 899999999998765           4567899999999999999999999999886  55 99999999


Q ss_pred             ccCCchhHHHHHH-HhcCC
Q psy3491          87 KSKHKSNLKTHMA-IRHQN  104 (108)
Q Consensus        87 ~f~~~~~l~~H~~-~h~~~  104 (108)
                      .|.....|..|++ .|.++
T Consensus        74 ~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           74 GFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CBSSHHHHHHHHHHTSCCC
T ss_pred             hhCCHHHHHHHHHHhcCCC
Confidence            9999999999997 45443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.71  E-value=9.5e-17  Score=86.98  Aligned_cols=85  Identities=18%  Similarity=0.333  Sum_probs=74.6

Q ss_pred             cCccCccCCC--CC-CCcChhHHHHHhhhcCCCCCccccccCCCceeecc--chhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491           7 YRTVNIVDPV--CP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCE--SCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus         7 ~~~~~~~~~~--c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .....+.|++  |. .|.....|..|++.+           .++++|.|.  .|++.|.....|..|++.|.+.++ |.|
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C   78 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTH-----------TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQC   78 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHH-----------SCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS-CBC
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHh-----------CCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC-eEC
Confidence            3344568986  99 899999999998865           456789996  699999999999999999999887 999


Q ss_pred             CCCccccCCchhHHHHHHHhcC
Q psy3491          82 PFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        82 ~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      .+|++.|.....|..|+++|++
T Consensus        79 ~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           79 GVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             SSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCcCccCCHHHHHHHHHHhCC
Confidence            9999999999999999999974

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=3.4e-17  Score=91.82  Aligned_cols=92  Identities=21%  Similarity=0.431  Sum_probs=63.4

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCcc---------------cc-----ccCCCceeeccchhhhccCchHHHHHH
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFS---------------SF-----KPLQSALFMCESCHKTYKAKGSLERHK   69 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~C~~c~~~f~~~~~l~~h~   69 (108)
                      .+.|++|. .|.....|..|++.+.....+.               .|     ...++++|.|..|++.|.....|..|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   86 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM   86 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHH
Confidence            35677777 6777777777766543221111               11     234566788888888888888888888


Q ss_pred             hHHhcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          70 KFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        70 ~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      +.|.+.++ |.|.+|++.|.....|.+|++..|+
T Consensus        87 ~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           87 VSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             HHHSSSCS-EECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             HHcCCCCC-ccCCCccchhCCHHHHHHHHHHHCC
Confidence            88877666 8888888888888888888875444

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.70  E-value=3.5e-17  Score=98.05  Aligned_cols=96  Identities=19%  Similarity=0.346  Sum_probs=74.7

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCcc---------------cc--ccCCCceeeccchhhhccCchHHHHHHhHH
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFS---------------SF--KPLQSALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      .+.|+.|. .|.....|..|+..+.....+.               .|  .+.++++|.|..|++.|.....|..|++.|
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  128 (190)
T 2i13_A           49 PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH  128 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHh
Confidence            46899999 8999999999987653322111               11  223567888888888888888888888888


Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .+.++ |.|.+|++.|.....|..|+++|+++++|
T Consensus       129 ~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  162 (190)
T 2i13_A          129 TGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPY  162 (190)
T ss_dssp             HCCCC-EECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             CCCCC-eECCCCCcccCCHHHHHHHHHhcCCCCCe
Confidence            88776 88888888888888888888888888876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.69  E-value=1.1e-17  Score=95.53  Aligned_cols=65  Identities=15%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .+.|+++|.|..|++.|.....|..|++.|.++++ |.|++|++.|.....|..|+++|++++||+
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   80 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIHHTGERRYQ   80 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC-EECSSSSCEESSHHHHHHHHHHHHTCCCEE
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC-eeCCccCeecccccchhhhccccCCCcccc
Confidence            34689999999999999999999999999999887 999999999999999999999999999873

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=6.1e-17  Score=83.14  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=58.8

Q ss_pred             cccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          42 FKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        42 ~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      ..+.++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|.+|+++|+++..
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC-EECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC-eECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            356788999999999999999999999999998887 9999999999999999999999998753

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.9e-17  Score=90.26  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=73.7

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      +.|++|. .|.....|..|++.+             .++|.|..|++.|.....|..|+. |.++++ |.|.+|++.|..
T Consensus        17 ~~C~~C~~~f~~~~~l~~H~~~H-------------~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~-~~C~~C~~~f~~   81 (107)
T 1wjp_A           17 YQCRLCNAKLSSLLEQGSHERLC-------------RNAAVCPYCSLRFFSPELKQEHES-KCEYKK-LTCLECMRTFKS   81 (107)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHH-------------HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG-GEEGGGTEECSS
T ss_pred             eECCCCCCccCCHHHHHHHHHHC-------------CCCccCCCCCCccCCHHHHHHHHH-cCCCCC-ccCccccchhCC
Confidence            5999999 899999999998765             257999999999999999999996 888776 999999999999


Q ss_pred             chhHHHHHH-HhcCCCCCC
Q psy3491          91 KSNLKTHMA-IRHQNGLHV  108 (108)
Q Consensus        91 ~~~l~~H~~-~h~~~k~~~  108 (108)
                      ...|.+|++ .|.++++|.
T Consensus        82 ~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           82 SFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             HHHHHHHHHHTSCCCCCCC
T ss_pred             HHHHHHHHHHHcCCCCCCC
Confidence            999999997 888888874

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.1e-16  Score=88.53  Aligned_cols=64  Identities=22%  Similarity=0.378  Sum_probs=57.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhH---HhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKF---ECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~---~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .+.++++|.|..|++.|.....|..|+..   +.+..+ |.|.+|++.|.....|..|+++|+++++|
T Consensus        29 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   95 (124)
T 2dlq_A           29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVSHTGEMPY   95 (124)
T ss_dssp             HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC-EECSSSCCEESSHHHHHHHHHHHSSSCSE
T ss_pred             hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC-eECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            34677899999999999999999999986   355555 99999999999999999999999999987

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.68  E-value=1.6e-16  Score=89.22  Aligned_cols=85  Identities=27%  Similarity=0.504  Sum_probs=76.3

Q ss_pred             CccCC--CCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCC--Cc
Q psy3491          11 NIVDP--VCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPF--CP   85 (108)
Q Consensus        11 ~~~~~--~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~--C~   85 (108)
                      .+.|+  .|. .|.....|..|++.+            +.++|.|..|++.|.....|..|++.|.+.++ |.|..  |+
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~   71 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTH------------GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCG   71 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGG------------SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC-EECCSTTCC
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHc------------CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-eeCCCCCCc
Confidence            46888  899 899999999998654            35689999999999999999999999998777 99976  99


Q ss_pred             cccCCchhHHHHHHHhcCCCCCC
Q psy3491          86 YKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        86 ~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +.|.....|..|+++|+++++|.
T Consensus        72 ~~f~~~~~l~~H~~~h~~~~~~~   94 (124)
T 1ubd_C           72 KRFSLDFNLRTHVRIHTGDRPYV   94 (124)
T ss_dssp             CEESCHHHHHHHHHHHHCCCCCC
T ss_pred             CccCCHHHHHHHHHHhCCCCceE
Confidence            99999999999999999999874

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.67  E-value=6.8e-17  Score=79.26  Aligned_cols=57  Identities=26%  Similarity=0.588  Sum_probs=50.4

Q ss_pred             CCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |+++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC-cCCCCCcchhCCHHHHHHHHHHhcC
Confidence            46799999999999999999999999999887 9999999999999999999999985

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.4e-16  Score=87.90  Aligned_cols=82  Identities=18%  Similarity=0.303  Sum_probs=73.7

Q ss_pred             cCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcccc
Q psy3491          10 VNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKS   88 (108)
Q Consensus        10 ~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f   88 (108)
                      ..+.| .|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f   75 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSMH-----------LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRF   75 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHH-----------SCCCSEECTTTSCEESSSHHHHHHHTTTCCCCC-EECSSSCCEE
T ss_pred             CCEec-cCCCccCCHHHHHHHHHHc-----------CCCcCccCCCCCcccCCHHHHHHHHHHcCCCCC-eeCCCCcchh
Confidence            34689 899 899999999998866           456789999999999999999999999998777 9999999999


Q ss_pred             CCchhHHHHHHHhcCC
Q psy3491          89 KHKSNLKTHMAIRHQN  104 (108)
Q Consensus        89 ~~~~~l~~H~~~h~~~  104 (108)
                      .....|.+|++.|++.
T Consensus        76 ~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           76 MWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcccc
Confidence            9999999999998753

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=1.5e-16  Score=84.51  Aligned_cols=82  Identities=20%  Similarity=0.366  Sum_probs=72.7

Q ss_pred             ccCccCCC--CC-CCcChhHHHHHhhhcCCCCCccccccCCCceeecc--chhhhccCchHHHHHHhHHhcCCCCccCCC
Q psy3491           9 TVNIVDPV--CP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCE--SCHKTYKAKGSLERHKKFECGKEAGLQCPF   83 (108)
Q Consensus         9 ~~~~~~~~--c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~   83 (108)
                      +..+.|++  |. .|.....|..|+..+           .++++|.|.  .|++.|.....|..|++.|.+.++ |.|..
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~   70 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTH-----------TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQK   70 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTS-----------CSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC-EECSS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhc-----------CCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCC
Confidence            34568988  99 899999999998755           456789997  699999999999999999999887 99999


Q ss_pred             CccccCCchhHHHHHHHhc
Q psy3491          84 CPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        84 C~~~f~~~~~l~~H~~~h~  102 (108)
                      |++.|.....|..|+++|.
T Consensus        71 C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           71 CDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             SSCEESSHHHHHHHGGGGC
T ss_pred             CCcccCCHHHHHHHHHhhC
Confidence            9999999999999998873

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.1e-17  Score=89.06  Aligned_cols=63  Identities=21%  Similarity=0.366  Sum_probs=58.6

Q ss_pred             cCCCceeeccchhhhcc-CchHHHHHHhHHhc-CCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          44 PLQSALFMCESCHKTYK-AKGSLERHKKFECG-KEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~-~~~~l~~h~~~~~~-~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      +.++++|.|..|++.|. ....|..|++.|.+ .++ |.|.+|++.|.....|.+|+++|++++|.
T Consensus        19 h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~-~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-LKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH-HSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC-EECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            46788999999999999 99999999999987 676 99999999999999999999999999885

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=8.2e-17  Score=88.03  Aligned_cols=64  Identities=13%  Similarity=0.177  Sum_probs=57.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhH-H---hcCCCCccCCCCccccCCchhHHHH-HHHhcCCCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKF-E---CGKEAGLQCPFCPYKSKHKSNLKTH-MAIRHQNGLHV  108 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~-~---~~~~~~~~c~~C~~~f~~~~~l~~H-~~~h~~~k~~~  108 (108)
                      ..|++||.|..|++.|.....|..|++. |   .++++ |.|.+|++.|...+.|..| +++|++++||.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp-f~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~   81 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-YVCVECNFLTKRYDALSEHNLKYHPGEENFK   81 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC-EEETTTTEEESSTHHHHTHHHHTSTTCCCEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHhcCCCCCee
Confidence            3688999999999999999999999974 7   34555 9999999999999999999 89999999973

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.63  E-value=2.1e-16  Score=77.44  Aligned_cols=56  Identities=25%  Similarity=0.581  Sum_probs=53.2

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ||.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC-EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC-ccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999999999777 999999999999999999999999886

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.63  E-value=4.5e-16  Score=86.68  Aligned_cols=78  Identities=19%  Similarity=0.396  Sum_probs=71.0

Q ss_pred             ccCC--CCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC--CCCcc
Q psy3491          12 IVDP--VCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC--PFCPY   86 (108)
Q Consensus        12 ~~~~--~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c--~~C~~   86 (108)
                      +.|+  .|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.++++ |.|  +.|++
T Consensus        37 ~~C~~~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~  104 (119)
T 2jp9_A           37 YQCDFKDCERRFSRSDQLKRHQRRH-----------TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQK  104 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH-----------HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC-EECCSTTCCC
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHc-----------CCCCCccCCccCchhCCHHHHHHHHHHhcCCCC-eeCCCCCCcc
Confidence            5888  799 899999999998865           456789999999999999999999999999887 999  89999


Q ss_pred             ccCCchhHHHHHHHh
Q psy3491          87 KSKHKSNLKTHMAIR  101 (108)
Q Consensus        87 ~f~~~~~l~~H~~~h  101 (108)
                      .|.+...|.+|+++|
T Consensus       105 ~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          105 KFARSDELVRHHNMH  119 (119)
T ss_dssp             EESSHHHHHHHHHTC
T ss_pred             ccCCHHHHHHHHhcC
Confidence            999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=9.5e-16  Score=82.98  Aligned_cols=60  Identities=20%  Similarity=0.354  Sum_probs=53.4

Q ss_pred             CCCceeeccchhhhc-cCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHH-HHHhcCCCCC
Q psy3491          45 LQSALFMCESCHKTY-KAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTH-MAIRHQNGLH  107 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f-~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H-~~~h~~~k~~  107 (108)
                      .++++|.|..|++.| .....|..|++.| ++++ |.|.+|++.|.....|..| +++|++ +||
T Consensus        30 ~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~-~~C~~Cgk~F~~~~~L~~H~~~~H~~-~p~   91 (96)
T 2ctd_A           30 VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM-FTCHHCGKQLRSLAGMKYHVMANHNS-LPS   91 (96)
T ss_dssp             HHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC-CCCSSSCCCCSSHHHHHHHHHHHTCC-CSS
T ss_pred             cCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC-eECCCCCCeeCCHHHHHHHhHHhcCC-CCC
Confidence            356799999999999 9999999999999 8776 9999999999999999999 777765 454

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.62  E-value=7.8e-16  Score=89.43  Aligned_cols=58  Identities=28%  Similarity=0.424  Sum_probs=54.3

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcCCCCccCCC--CccccCCchhHHHHHHHhcCCCCCC
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPF--CPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~--C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |.|..|++.|.....|..|++.|.+.++ |.|..  |++.|.....|.+|+++|+++++|.
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~  122 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTGEKPFK  122 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCS-EECSCTTTCCEESCHHHHHHHHTTTCSSCSBC
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCc-ccCCcCCCCCccCCHHHHHHHHHhhCCCCCcc
Confidence            7899999999999999999999998777 99988  9999999999999999999999874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3e-16  Score=79.10  Aligned_cols=60  Identities=23%  Similarity=0.495  Sum_probs=54.1

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhH-H-hcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKF-E-CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~-~-~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      .+.+++||.|..|++.|.....|..|++. | .+.++ |.|+.|++.|...+.|..|++++|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC-EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC-eECCCCCCccCCHHHHHHHHHHHcC
Confidence            35678999999999999999999999998 5 35565 9999999999999999999999987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.4e-15  Score=80.16  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=58.7

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCC---CCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKE---AGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~---~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .+.++++|.|..|++.|.....|..|++.++...   .+|.|.+|++.|.....|..|+++|++++++.
T Consensus         9 ~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A            9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             eecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            4567899999999999999999999998877652   34999999999999999999999999998863

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=79.37  Aligned_cols=62  Identities=24%  Similarity=0.387  Sum_probs=54.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhc---CCCCccCCCCccccCCchhHHHHHHHhc-CCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECG---KEAGLQCPFCPYKSKHKSNLKTHMAIRH-QNGL  106 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~---~~~~~~c~~C~~~f~~~~~l~~H~~~h~-~~k~  106 (108)
                      ++++++|.|..|++.|.....|..|++.|.+   .++ |.|.+|++.|.....|.+|++.+| ++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC-EECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc-cCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999999999999986   566 999999999999999999996544 4444

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=80.53  Aligned_cols=61  Identities=20%  Similarity=0.530  Sum_probs=54.2

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHH-HhcCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMA-IRHQNG  105 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~-~h~~~k  105 (108)
                      ....++|.|+.|++.|.....|..|++.|+++++ |.|.+|++.|.....|.+|++ .|.+|.
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS-EECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc-cCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3456789999999999999999999999999887 999999999999999999975 565553

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=2.8e-15  Score=77.76  Aligned_cols=64  Identities=22%  Similarity=0.426  Sum_probs=55.0

Q ss_pred             cccCCCceeeccchhhhccCchHHHHHHh-HHhcCCCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          42 FKPLQSALFMCESCHKTYKAKGSLERHKK-FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        42 ~~~~~~~~~~C~~c~~~f~~~~~l~~h~~-~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ..+++++||.|..|++.|.....|..|++ .|.+...+|.|.+|++.|.....|.+|++.+|+..
T Consensus         8 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             cccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            34578899999999999999999999997 55554234999999999999999999999987754

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=3.1e-15  Score=86.79  Aligned_cols=57  Identities=21%  Similarity=0.553  Sum_probs=30.5

Q ss_pred             CCceeeccc--hhhhccCchHHHHHH-hHHhcCCCCccCCC--CccccCCchhHHHHHHHhcC
Q psy3491          46 QSALFMCES--CHKTYKAKGSLERHK-KFECGKEAGLQCPF--CPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        46 ~~~~~~C~~--c~~~f~~~~~l~~h~-~~~~~~~~~~~c~~--C~~~f~~~~~l~~H~~~h~~  103 (108)
                      ++++|.|..  |++.|.....|..|+ +.|.+.++ |.|.+  |++.|.....|..|+++|||
T Consensus        94 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP-YVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC-EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC-eeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            344555554  555555555555555 44444443 55555  55555555555555555543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=2.8e-15  Score=77.94  Aligned_cols=63  Identities=24%  Similarity=0.453  Sum_probs=46.8

Q ss_pred             CCCceeeccc--hhhhccCchHHHHHHh-HHhcCCCCccCCC--CccccCCchhHHHHHHHhcCCCCCC
Q psy3491          45 LQSALFMCES--CHKTYKAKGSLERHKK-FECGKEAGLQCPF--CPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        45 ~~~~~~~C~~--c~~~f~~~~~l~~h~~-~~~~~~~~~~c~~--C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +++++|.|..  |++.|.....|..|++ .|.+.++ |.|..  |++.|.....|.+|+++|+++++|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~   70 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI   70 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC-EECSCTTTCCEESSHHHHHHHHHHHHTSCCCS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC-eECCCCCCcCccCCHHHHHHHHHHhCCCCCee
Confidence            3556777765  8888887777888877 5666665 88877  8888888888888888887777763

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.1e-16  Score=85.86  Aligned_cols=86  Identities=16%  Similarity=0.145  Sum_probs=72.6

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCce-eeccchhhhc--cCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSAL-FMCESCHKTY--KAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~c~~~f--~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      .+.|++|. .|.....|..|++...         +.+.++ +.|..|++.|  .....|..|++.|.++++ |.|.+|++
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~---------h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~-~~C~~C~k   88 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETG---------HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGH   88 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTC---------CCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS-CBCSSSCC
T ss_pred             CEECCccCchhcCHHHHHHHHHHhC---------ccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc-eECCCCCC
Confidence            36899999 8999999999988611         133444 4599999999  888899999999998777 99999999


Q ss_pred             ccCCchhHHHHHHHhcCCCC
Q psy3491          87 KSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        87 ~f~~~~~l~~H~~~h~~~k~  106 (108)
                      .|.....|.+|+++|+..+.
T Consensus        89 ~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           89 SFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             BCSSHHHHHHHHHHTTTTTC
T ss_pred             ccCCHHHHHHHHHHhCCccc
Confidence            99999999999999887653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=2e-15  Score=87.61  Aligned_cols=62  Identities=18%  Similarity=0.334  Sum_probs=49.5

Q ss_pred             CCCceeeccc--hhhhccCchHHHHHHhHHhcCCCCccCCC--CccccCCchhHHHHH-HHhcCCCCC
Q psy3491          45 LQSALFMCES--CHKTYKAKGSLERHKKFECGKEAGLQCPF--CPYKSKHKSNLKTHM-AIRHQNGLH  107 (108)
Q Consensus        45 ~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~~--C~~~f~~~~~l~~H~-~~h~~~k~~  107 (108)
                      .++++|.|..  |++.|.....|..|++.|.+.++ |.|.+  |++.|.+...|.+|+ +.|.++++|
T Consensus        63 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  129 (155)
T 2gli_A           63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY  129 (155)
T ss_dssp             HCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCC-EECCSTTCCCEESSSSTTHHHHHHTTCSCCCE
T ss_pred             CCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhcCCCCCe
Confidence            3567788874  88888888888888888877666 88887  888888888888887 678777775

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.57  E-value=4e-15  Score=78.15  Aligned_cols=76  Identities=28%  Similarity=0.460  Sum_probs=68.5

Q ss_pred             ccC--CCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccc--hhhhccCchHHHHHHhHHhcCCCCccCCC---
Q psy3491          12 IVD--PVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCES--CHKTYKAKGSLERHKKFECGKEAGLQCPF---   83 (108)
Q Consensus        12 ~~~--~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~~---   83 (108)
                      +.|  +.|. .|.....|..|++.+           .++++|.|..  |++.|.....|..|++.|.+    |.|..   
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~   66 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFSH-----------TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDS   66 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH-----------HTTCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHh-----------CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCC
Confidence            468  8899 899999999998765           4678999988  99999999999999999987    89999   


Q ss_pred             CccccCCchhHHHHHHHhc
Q psy3491          84 CPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        84 C~~~f~~~~~l~~H~~~h~  102 (108)
                      |++.|.....|.+|+++||
T Consensus        67 C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           67 CSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCCEESSHHHHHHHHHHCC
T ss_pred             CCCccCCHHHHHHHHHhcC
Confidence            9999999999999999876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.56  E-value=8.7e-15  Score=87.58  Aligned_cols=61  Identities=21%  Similarity=0.374  Sum_probs=35.2

Q ss_pred             CCceeecc--chhhhccCchHHHHHH-hHHh-cCCCCccC--CCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          46 QSALFMCE--SCHKTYKAKGSLERHK-KFEC-GKEAGLQC--PFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        46 ~~~~~~C~--~c~~~f~~~~~l~~h~-~~~~-~~~~~~~c--~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ++++|.|.  .|++.|.....|..|+ ..|. +..+ |.|  ..|++.|.....|..|+++|+++++|
T Consensus        69 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~  135 (190)
T 1tf6_A           69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV-YVCHFENCGKAFKKHNQLKVHQFSHTQQLPY  135 (190)
T ss_dssp             TCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSC-CEECSSSSCEECSSHHHHHHHHGGGSSSCSS
T ss_pred             CCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcce-eeCCCCCCccccCCHHHHHHHHHHhCCCCCc
Confidence            44556666  5666666666666665 3332 2233 666  55666666666666666666666555

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.55  E-value=1.8e-16  Score=84.30  Aligned_cols=79  Identities=13%  Similarity=0.199  Sum_probs=69.8

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCC
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~   90 (108)
                      +.|++|. .|.....|..|++.+           .+++||.|..|++.|.....|..|++.+++ .+ +.|..|++.|..
T Consensus         4 ~~C~~C~k~f~~~~~L~~H~~~H-----------~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~-~~c~~C~~~f~~   70 (88)
T 1llm_C            4 FQCRICMRNFSRSDHLTTHIRTH-----------TGEKPFACDICGRKFARSDERKRHRDIQHI-LP-ILEDKVEELLSK   70 (88)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH-----------HCCCCEECTTTCCEESSHHHHHHHHHHHTH-HH-HHHHHHHHHHHH
T ss_pred             CcCCCCCCccCCHHHHHHHHHHc-----------CCCCCccCCCCCCccCCHHHHHHHHHHhCC-Cc-chHHHHHHHHHH
Confidence            5799999 899999999998765           467789999999999999999999999886 55 999999999999


Q ss_pred             chhHHHHHHHhcC
Q psy3491          91 KSNLKTHMAIRHQ  103 (108)
Q Consensus        91 ~~~l~~H~~~h~~  103 (108)
                      ...|..|++.+|+
T Consensus        71 ~~~L~~H~~~~h~   83 (88)
T 1llm_C           71 NYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHH
Confidence            9999999987765

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.54  E-value=1.3e-14  Score=79.37  Aligned_cols=63  Identities=16%  Similarity=0.375  Sum_probs=58.7

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+++|+++++|.
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   75 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPFK   75 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCSSSCCBCSCHHHHHHHGGGSCCCCTTS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCCCccchhCCHHHHHHHHHHhCCCCCeE
Confidence            456789999999999999999999999998777 999999999999999999999999999874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.54  E-value=9.1e-15  Score=78.43  Aligned_cols=63  Identities=25%  Similarity=0.467  Sum_probs=58.1

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCC--CCCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN--GLHV  108 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~--k~~~  108 (108)
                      .++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|++.|+++  ++|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~   67 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI   67 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCS-EECSSSCCEESCHHHHHHHHHHHCCCCCSSBC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCC-CcCCCCCCccCCHHHHHHHHHHhcCCCCCceE
Confidence            467899999999999999999999999988777 99999999999999999999999997  7763

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.54  E-value=5.2e-15  Score=79.54  Aligned_cols=62  Identities=26%  Similarity=0.517  Sum_probs=58.2

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+++|+++++|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   65 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPF   65 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCS-EECSSSCCEESSHHHHHHHHHHSCCCCCE
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCC-EeCCCCCCccCCHHHHHHHHHHhCCCCCc
Confidence            567899999999999999999999999998776 99999999999999999999999999886

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=9.8e-15  Score=74.86  Aligned_cols=60  Identities=22%  Similarity=0.542  Sum_probs=54.5

Q ss_pred             cccCCCceeecc--chhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhc
Q psy3491          42 FKPLQSALFMCE--SCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        42 ~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      ....++++|.|.  .|++.|.....|..|++.|.+.++ |.|.+|++.|.....|.+|+++|+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC-eECCCCCchhCCHHHHHHHHHhcC
Confidence            345678899997  699999999999999999999887 999999999999999999998774

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=6.8e-15  Score=81.00  Aligned_cols=62  Identities=27%  Similarity=0.451  Sum_probs=58.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ++++++|.| .|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+++|+++++|
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   66 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTGIKPY   66 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTTCCCCCE
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC-ccCCCCCcccCCHHHHHHHHHHcCCCCCe
Confidence            567889999 999999999999999999998777 99999999999999999999999999886

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.53  E-value=1.1e-14  Score=77.39  Aligned_cols=61  Identities=25%  Similarity=0.561  Sum_probs=55.9

Q ss_pred             CCceeecc--chhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          46 QSALFMCE--SCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        46 ~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      |++||.|.  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|+++++|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   63 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF   63 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCcccCCHHHHHHHHHHcCCCCCc
Confidence            46789998  699999999999999999998777 99999999999999999999999999886

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.53  E-value=9.5e-15  Score=76.25  Aligned_cols=58  Identities=26%  Similarity=0.545  Sum_probs=55.2

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ||.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   58 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPH   58 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC-EECSSSCCEESSHHHHHHHHHHHHTCCCE
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC-eeCCcCChhhCCHHHHHHHHHHhcCCCCC
Confidence            68999999999999999999999998777 99999999999999999999999999886

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=8e-15  Score=72.46  Aligned_cols=56  Identities=23%  Similarity=0.524  Sum_probs=50.4

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHH-HhcCC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMA-IRHQN  104 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~-~h~~~  104 (108)
                      +||.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|.+|++ .|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS-EECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            479999999999999999999999998777 999999999999999999974 55543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.51  E-value=1.4e-14  Score=86.63  Aligned_cols=84  Identities=24%  Similarity=0.367  Sum_probs=73.2

Q ss_pred             ccC--CCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeec--cchhhhccCchHHHHHHhHHhcCCCCccCC--CC
Q psy3491          12 IVD--PVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMC--ESCHKTYKAKGSLERHKKFECGKEAGLQCP--FC   84 (108)
Q Consensus        12 ~~~--~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~--~C   84 (108)
                      +.|  +.|. .|.....|..|++.+           .++++|.|  ..|++.|.....|..|++.|.+.++ |.|.  .|
T Consensus        13 ~~C~~~~C~~~f~~~~~L~~H~~~h-----------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C   80 (190)
T 1tf6_A           13 YICSFADCGAAYNKNWKLQAHLCKH-----------TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGC   80 (190)
T ss_dssp             CBCSSTTTCCBCSSHHHHHHHHHHH-----------HCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCC-EECCSSSC
T ss_pred             eeCCCCCCcchhCCHHHHHHHHHhc-----------CCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCc-eeCCCCCC
Confidence            588  7899 899999999998765           45778999  8899999999999999999998777 9999  89


Q ss_pred             ccccCCchhHHHHHHHhc--CCCCC
Q psy3491          85 PYKSKHKSNLKTHMAIRH--QNGLH  107 (108)
Q Consensus        85 ~~~f~~~~~l~~H~~~h~--~~k~~  107 (108)
                      ++.|.+...|..|++..|  ++++|
T Consensus        81 ~~~f~~~~~l~~H~~~~h~~~~~~~  105 (190)
T 1tf6_A           81 DLRFTTKANMKKHFNRFHNIKICVY  105 (190)
T ss_dssp             CCEESCHHHHHHHHHTTSSTTTSCC
T ss_pred             CCccCCHHHHHHHHHHhcCCCccee
Confidence            999999999999995444  45555

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.50  E-value=2.1e-14  Score=76.19  Aligned_cols=56  Identities=23%  Similarity=0.510  Sum_probs=52.9

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      ++||.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCCccCCHHHHHHHHHHhCC
Confidence            4689999999999999999999999999887 9999999999999999999999885

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.49  E-value=2.7e-14  Score=80.66  Aligned_cols=57  Identities=19%  Similarity=0.472  Sum_probs=53.2

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      .+++||.|..|++.|.....|..|++.|  .++ |.|..|++.|.....|.+|+++|++.
T Consensus        70 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~-~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           70 KAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT-KVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHCSEECTTTCCEESSHHHHHHHHHHT--CCC-CBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCeECCCCCcccCCHhHHHHHHHHC--CCC-CCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            5678999999999999999999999998  566 99999999999999999999999986

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-14  Score=72.38  Aligned_cols=59  Identities=19%  Similarity=0.418  Sum_probs=53.5

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC-CCccccCCchhHHHHHHHhcCCCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP-FCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~-~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      -+.+||.|..|++.|. ...|..|++. .+.++ |.|. .|++.|...+.|..|+++|-...+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p-~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP-VACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE-EECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcC-ccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4678999999999999 9999999998 77676 9999 999999999999999999887765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.47  E-value=7.8e-14  Score=76.44  Aligned_cols=63  Identities=13%  Similarity=0.269  Sum_probs=56.5

Q ss_pred             cccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          42 FKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        42 ~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ..+.++++|.|..|++.|.....|..|++.|.  ++ |.|.+|++.|.....|..|++ |+++++|.
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~-~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~   71 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NA-AVCPYCSLRFFSPELKQEHES-KCEYKKLT   71 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HS-BCCTTTCCCBSSHHHHHHHHH-HCSTGGGE
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CC-ccCCCCCCccCCHHHHHHHHH-cCCCCCcc
Confidence            44577889999999999999999999999985  45 999999999999999999996 99998873

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=7.4e-14  Score=74.86  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=53.3

Q ss_pred             eeeccchhhhccCchHHHHHHhH-HhcCCCC--------ccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKF-ECGKEAG--------LQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~-~~~~~~~--------~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .+.|..|++.|.....|..|++. |.+. .+        |.|..|++.|.....|.+|+++|++++||.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~-~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   92 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGG-PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGP   92 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCC-TTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCS
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCC-CCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            47799999999999999999998 7664 34        899999999999999999999999999985

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.8e-13  Score=70.98  Aligned_cols=68  Identities=21%  Similarity=0.376  Sum_probs=58.4

Q ss_pred             CccCCC--CC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccc--hhhhccCchHHHHHHhHHhcCCCCccCCCCc
Q psy3491          11 NIVDPV--CP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCES--CHKTYKAKGSLERHKKFECGKEAGLQCPFCP   85 (108)
Q Consensus        11 ~~~~~~--c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~   85 (108)
                      .+.|+.  |. .|.....|..|++..          +.++++|.|..  |++.|.....|..|++.|.++++ |.|.+|+
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~----------H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~   75 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQ----------HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFSG   75 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHG----------GGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCSSS
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHH----------hCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC-eeCCCCC
Confidence            355655  99 899999999998732          25678999998  99999999999999999999887 9999999


Q ss_pred             cccC
Q psy3491          86 YKSK   89 (108)
Q Consensus        86 ~~f~   89 (108)
                      +.|.
T Consensus        76 k~F~   79 (79)
T 2dlk_A           76 PSSG   79 (79)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9884

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.4e-14  Score=79.36  Aligned_cols=66  Identities=14%  Similarity=0.112  Sum_probs=58.0

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhH--HhcCCCCccCCCCcccc--CCchhHHHHHHHhcCCCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKF--ECGKEAGLQCPFCPYKS--KHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~--~~~~~~~~~c~~C~~~f--~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .+.+++||.|..|++.|.....|..|++.  +.+..+.+.|.+|++.|  .....|..|+++|+++++|.
T Consensus        13 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A           13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             eeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            45678999999999999999999999998  66666535599999999  89999999999999999984

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.41  E-value=4.1e-14  Score=68.61  Aligned_cols=51  Identities=24%  Similarity=0.393  Sum_probs=46.1

Q ss_pred             hhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          57 KTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        57 ~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +.|.....|..|++.|.++++ |.|.+|++.|...+.|.+|+++|++++||+
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQP-ATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCC-EECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCC-ccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            466777778889999999887 999999999999999999999999999985

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.40  E-value=3e-13  Score=69.06  Aligned_cols=57  Identities=21%  Similarity=0.503  Sum_probs=51.2

Q ss_pred             cCCCceeeccc--hhhhccCchHHHHHHhHHhcCCCCccCCC--CccccCCchhHHHHHHHh
Q psy3491          44 PLQSALFMCES--CHKTYKAKGSLERHKKFECGKEAGLQCPF--CPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        44 ~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~~--C~~~f~~~~~l~~H~~~h  101 (108)
                      ....++|.|..  |++.|.....|..|++.|.+.++ |.|.+  |++.|.....|.+|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS-EECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC-ccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34667899988  99999999999999999999887 99965  999999999999998764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=70.36  Aligned_cols=63  Identities=17%  Similarity=0.416  Sum_probs=57.3

Q ss_pred             CCCceeeccc--hhhhccCchHHHHHHhHHhcCCCCccCC--CCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          45 LQSALFMCES--CHKTYKAKGSLERHKKFECGKEAGLQCP--FCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        45 ~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~--~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ...++|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|.+|+++|+++++|.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~   77 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ   77 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC-EECCSSSCCCEESSHHHHHHHHHHHTSCCSCB
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhCCCCCeE
Confidence            3466899996  99999999999999999998777 9996  69999999999999999999999874

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.38  E-value=2.9e-13  Score=67.08  Aligned_cols=55  Identities=22%  Similarity=0.297  Sum_probs=50.0

Q ss_pred             cCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          10 VNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        10 ~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      .-+.|+.|. .|.....|..|++++           +|++||.|..||+.|.....|..|+++|.++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~H-----------t~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAH-----------LGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHH-----------HTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHh-----------CCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            346899999 899999999999876           7889999999999999999999999999874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.35  E-value=5e-13  Score=70.67  Aligned_cols=60  Identities=23%  Similarity=0.462  Sum_probs=55.4

Q ss_pred             Cceeeccc--hhhhccCchHHHHHHhHHhcCCCCccCC--CCccccCCchhHHHHHHHhcCCCCC
Q psy3491          47 SALFMCES--CHKTYKAKGSLERHKKFECGKEAGLQCP--FCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        47 ~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~--~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ..+|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|..|++.|+++++|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   66 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHRPF   66 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC-EECCSTTTCCEESSHHHHHHHHHHHHCCCCE
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC-cCCCCCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            35799999  99999999999999999998777 9997  6999999999999999999999886

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.35  E-value=9.5e-13  Score=63.73  Aligned_cols=48  Identities=17%  Similarity=0.333  Sum_probs=43.0

Q ss_pred             cccCCCceeeccchhhhccCchHHHHHHh-HHhcCCCCccCCCCccccCC
Q psy3491          42 FKPLQSALFMCESCHKTYKAKGSLERHKK-FECGKEAGLQCPFCPYKSKH   90 (108)
Q Consensus        42 ~~~~~~~~~~C~~c~~~f~~~~~l~~h~~-~~~~~~~~~~c~~C~~~f~~   90 (108)
                      +.+.+++||.|..|++.|.....|..|++ .|.++++ |.|.+|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~-~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC-ccCCCCCCCCCC
Confidence            34567889999999999999999999987 8888777 999999999976

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.34  E-value=1.2e-12  Score=68.50  Aligned_cols=54  Identities=26%  Similarity=0.574  Sum_probs=51.0

Q ss_pred             eeec--cchhhhccCchHHHHHHhHHhcCCCCccCCC--CccccCCchhHHHHHHHhcC
Q psy3491          49 LFMC--ESCHKTYKAKGSLERHKKFECGKEAGLQCPF--CPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        49 ~~~C--~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~--C~~~f~~~~~l~~H~~~h~~  103 (108)
                      ||.|  ..|++.|.....|..|++.|.+.++ |.|+.  |++.|.....|.+|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC-EECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            6899  8999999999999999999999877 99988  99999999999999999987

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=1.1e-11  Score=64.02  Aligned_cols=59  Identities=15%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+.|++|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.++++ |.|
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p-~~C   77 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHRRTH-----------TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP-SSG   77 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHTTT-----------CCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC-CCC
T ss_pred             CEECCCCCcccCCHHHHHHHHHHc-----------CCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCC
Confidence            35999999 899999999998765           567899999999999999999999999999876 877

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.6e-14  Score=72.47  Aligned_cols=58  Identities=16%  Similarity=0.256  Sum_probs=51.4

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .+.++++|.|..|++.|.....|..       .++ |.|..|++.|.....|..|+++|+++++|.
T Consensus        12 ~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~-~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~   69 (73)
T 2ctu_A           12 IHLGDRSQKCSKCGIIFIRRSTLSR-------RKT-PMCEKCRKDSCQEAALNKDEGNESGKKTSG   69 (73)
T ss_dssp             CCCCCSEEECSSSCCEEECCCCCCC-------SSS-CCCHHHHHTCSCCCSSCCCSSCCCCCCCSS
T ss_pred             HhCCCCCeeCCcccchhCCHHHhCc-------CCC-CCCCCCChhhcCHHHHHHHHHhhcCCCCCC
Confidence            4567899999999999999887764       455 999999999999999999999999999984

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.22  E-value=3.5e-11  Score=61.59  Aligned_cols=57  Identities=14%  Similarity=0.234  Sum_probs=50.5

Q ss_pred             cCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCC
Q psy3491          10 VNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEA   77 (108)
Q Consensus        10 ~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~   77 (108)
                      ..+.|+.|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.++++
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~H-----------~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTVH-----------TGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHHH-----------CCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHc-----------CCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            346999999 899999999998866           567899999999999999999999999998765

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.7e-12  Score=57.37  Aligned_cols=38  Identities=13%  Similarity=0.208  Sum_probs=23.7

Q ss_pred             hHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          70 KFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        70 ~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +.|.++++ |.|.+|++.|...+.|.+|+++|+++++|+
T Consensus         3 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2yte_A            3 SGSSGEKP-YSCAECKETFSDNNRLVQHQKMHTVKSGPS   40 (42)
T ss_dssp             SSSCSCCS-CBCTTTCCBCSSHHHHHHHHHHTSCCSSCC
T ss_pred             cCcCCCCC-eECCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            34555454 666666666666666666666666666653

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.3e-11  Score=56.15  Aligned_cols=41  Identities=17%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS-CSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34677788888888888888888888888887776 888776

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.6e-11  Score=56.47  Aligned_cols=41  Identities=17%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2yu8_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC-SCSCCC
T ss_pred             CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            34677889999999999998889999888888776 888876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3e-11  Score=56.32  Aligned_cols=41  Identities=20%  Similarity=0.316  Sum_probs=34.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPSSG   46 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC-CCSCCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            45677889999999999998899999998888776 888876

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=1.7e-11  Score=66.82  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=56.3

Q ss_pred             ccCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHH-HhHHhcCCCCccCCCCc
Q psy3491           9 TVNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERH-KKFECGKEAGLQCPFCP   85 (108)
Q Consensus         9 ~~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h-~~~~~~~~~~~~c~~C~   85 (108)
                      ...+.|+.|. .|.....|..|++....+       ..+++||.|..||+.|.....|..| ++.|.++++ |.|.++.
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~-------~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp-y~C~~~~   86 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHPN-------VVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN-FKLTMVK   86 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCSS-------CCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC-EEEEECC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCCC-------CCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC-eeCCccc
Confidence            3346899999 899999999998742110       1357899999999999999999999 899999887 9998754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=3.5e-11  Score=63.06  Aligned_cols=70  Identities=19%  Similarity=0.351  Sum_probs=58.4

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcccc
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKS   88 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f   88 (108)
                      .+.|++|. .|.....|..|+......       ...+++|.|..|++.|.....|..|++.|.+..+ +.|..|+..|
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~-------~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~-~~~~~~~~~~   85 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDP-------NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENSGPSS   85 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCS-------SCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCS-CCCCCCCCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCC-------cCCCcceECCCCCChhCCHHHHHHHHHHccCCCC-cccCCCCCCC
Confidence            35899999 899999999998765321       0123689999999999999999999999999877 9999998764

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.18  E-value=2.5e-11  Score=56.55  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=29.8

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS-CSCCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4566777788888888777777777777777665 777765

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.18  E-value=1.3e-11  Score=58.10  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=38.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      +.++++|.|..|++.|.....|..|++.|.++++ |.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC-CCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC-ccCCCCCC
Confidence            4567899999999999999999999999999887 99999985

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.18  E-value=2.1e-11  Score=56.59  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=37.0

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCc
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCP   85 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~   85 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC-CCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC-CCCcCCC
Confidence            35678899999999999999999999999998777 9999886

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.1e-11  Score=56.21  Aligned_cols=41  Identities=17%  Similarity=0.396  Sum_probs=33.5

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emh_A            6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC-SSSCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            34677888888888888888888888888888776 888876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.3e-11  Score=56.68  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=33.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGPSSG   46 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC-CCSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            35677888888888888888888888888888776 888876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.7e-11  Score=56.44  Aligned_cols=41  Identities=20%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eml_A            6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC-SCSSCC
T ss_pred             CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC-CCCCCC
Confidence            34677888888888888888888888888888776 888876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.2e-11  Score=56.18  Aligned_cols=41  Identities=15%  Similarity=0.181  Sum_probs=32.8

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoo_A            6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGPSSG   46 (46)
T ss_dssp             CCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS-SCCSCC
T ss_pred             CCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            34677788888888888888888888888887776 888776

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.18  E-value=5.1e-12  Score=57.80  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=17.1

Q ss_pred             HhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          72 ECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        72 ~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      |.++++ |.|.+|++.|...+.|.+|+++|+++++|
T Consensus         5 H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2el5_A            5 SSGENP-YECSECGKAFNRKDQLISHQRTHAGESGP   39 (42)
T ss_dssp             SSSCCS-EECSSSCCEESSHHHHHHHHGGGCCCCSC
T ss_pred             CCCCCC-ccCCCcChhhCCHHHHHHHHHhcCCCCCC
Confidence            334333 55555555555555555555555555444

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.5e-11  Score=56.05  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=33.0

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emp_A            6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC-CSCCCC
T ss_pred             ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34677788888888888888888888888888776 888776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.17  E-value=2.7e-11  Score=56.46  Aligned_cols=41  Identities=15%  Similarity=0.255  Sum_probs=34.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP-SGPSSG   46 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC-CSCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            45677889999999999998889999888888776 888876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.6e-11  Score=55.99  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +.+++||.|..|++.|.....|..|++.|.++++ |.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC-SCSSCC
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4567788888888888888888888888887776 888776

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.3e-11  Score=56.69  Aligned_cols=41  Identities=17%  Similarity=0.368  Sum_probs=32.8

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytn_A            6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC-CSCCCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC-CCCCCC
Confidence            34667788888888888888888888888887776 888776

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.3e-11  Score=56.12  Aligned_cols=41  Identities=20%  Similarity=0.326  Sum_probs=34.2

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en6_A            6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC-SSSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC-CCCCCC
Confidence            35677889999999999988889899888888776 888876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.17  E-value=3.1e-11  Score=56.20  Aligned_cols=41  Identities=17%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC-CSSSCC
T ss_pred             CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            34677888888888888888888888888888776 888776

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.5e-11  Score=56.10  Aligned_cols=41  Identities=15%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytm_A            6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSSG   46 (46)
T ss_dssp             CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC-CCCCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34567788888888888888888888888887766 888776

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.17  E-value=3.2e-11  Score=56.22  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC-SSCCCC
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4566777777777777777777777777777665 777665

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.7e-11  Score=55.93  Aligned_cols=40  Identities=15%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT-TSSSCC
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4567788888888888888888888888887776 888776

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=3.2e-11  Score=56.18  Aligned_cols=41  Identities=17%  Similarity=0.291  Sum_probs=34.4

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC-SSTTCC
T ss_pred             CCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34677889999999999999999999888888776 888876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.16  E-value=1.1e-11  Score=57.80  Aligned_cols=40  Identities=13%  Similarity=0.203  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emk_A            3 SGSSGTGEKP-YECKECGKAFSQTTHLIQHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCCCSSSCS-CBCSSSCCBCSCHHHHHHHHHHHSSCCCSS
T ss_pred             CCCccCCCCc-eECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            5677788776 999999999999999999999999999984

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.7e-11  Score=56.37  Aligned_cols=41  Identities=15%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS-CSSCCC
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34667788888888888888888888888887766 888776

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.16  E-value=1.2e-11  Score=57.69  Aligned_cols=40  Identities=15%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||+
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ely_A            3 SGSSGTGEKP-FKCVECGKGFSRRSALNVHHKLHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCS-BCCSSSCCCBSSTTHHHHHHHHHSCCSSCS
T ss_pred             CCCCCCCCCC-cccCccCcccCCHHHHHHHHHHcCCCCCCC
Confidence            5677888776 999999999999999999999999999985

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.3e-11  Score=55.73  Aligned_cols=41  Identities=15%  Similarity=0.190  Sum_probs=32.7

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN-SGPSSG   46 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC-CCTTCC
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34667788888888888888888888888887776 888776

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.4e-11  Score=56.05  Aligned_cols=41  Identities=15%  Similarity=0.148  Sum_probs=32.2

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epw_A            6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC-SCCCCC
T ss_pred             cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34567788888888888888888888888877766 888776

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.9e-11  Score=55.88  Aligned_cols=41  Identities=15%  Similarity=0.306  Sum_probs=32.5

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~c   46 (46)
T 2ytk_A            6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC-SSCCCC
T ss_pred             cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC-CCCCCC
Confidence            34667788888888888888888888888887776 888776

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4.5e-11  Score=55.66  Aligned_cols=41  Identities=15%  Similarity=0.319  Sum_probs=32.7

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytd_A            6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS-SCSSCC
T ss_pred             ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC-CCCCCC
Confidence            34567788888888888888888888888888776 888776

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.16  E-value=3.8e-11  Score=55.88  Aligned_cols=41  Identities=15%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC-CSTTCC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            34677889999999999998889999888888776 888876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.1e-11  Score=56.24  Aligned_cols=41  Identities=17%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC-SCCSCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34677888888888888888888888888888776 888876

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=57.86  Aligned_cols=36  Identities=25%  Similarity=0.525  Sum_probs=17.3

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      ++++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C   43 (46)
T 2eoh_A            8 SGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGP   43 (46)
T ss_dssp             CCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS-CST
T ss_pred             CCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            344445555555555555555555544444443 444

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.15  E-value=3.1e-11  Score=56.20  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=33.8

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2el4_A            6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC-SCCTTC
T ss_pred             CCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34677888888898888888888888888888776 888876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.2e-11  Score=56.23  Aligned_cols=41  Identities=22%  Similarity=0.386  Sum_probs=33.4

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC-SCCCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34677888888888888888888888888888776 888776

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=9e-12  Score=58.13  Aligned_cols=38  Identities=24%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP-SGPS   44 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC-CCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            3456666666666666666666666666666555 6664

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.4e-11  Score=56.08  Aligned_cols=40  Identities=18%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS-CCSCCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4567788888888888888888888888877666 888765

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.5e-11  Score=56.05  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC-CSSCCC
T ss_pred             CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            34677788888888888888888888888887766 888776

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.4e-11  Score=56.06  Aligned_cols=40  Identities=18%  Similarity=0.403  Sum_probs=29.2

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eq4_A            7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP-SGPSSG   46 (46)
T ss_dssp             SSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC-CCCCCC
T ss_pred             CCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC-CCCCCC
Confidence            4566777777777777777777777777777665 777765

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1e-11  Score=57.35  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|+++++|.
T Consensus         1 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (44)
T 2emx_A            1 GSSGSSGEKP-FGCSCCEKAFSSKSYLLVHQQTHAEEKPSG   40 (44)
T ss_dssp             CCCCCSSCCC-EECSSSSCEESSHHHHHHHHHHHTSSCSCS
T ss_pred             CCCCcCCCcC-ccCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            3566777776 999999999999999999999999999984

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.4e-11  Score=55.65  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=28.6

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.+.++ |.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGPSSG   46 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS-CCSCCC
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            4566677777777777777777777777777665 777665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=57.55  Aligned_cols=40  Identities=15%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSSG   46 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC-SSCSCC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4566777777777777777777777777777665 777765

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.8e-11  Score=55.91  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=28.5

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPSSG   46 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS-SSCCCC
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4566677777777777777777777777777665 777665

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.1e-11  Score=56.22  Aligned_cols=40  Identities=18%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC-CSCCCC
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC-CCCCCC
Confidence            4567788888888888888888888888887776 888876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=3.4e-11  Score=56.10  Aligned_cols=40  Identities=15%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP-SGPSSG   46 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC-SCSSCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC-cCCCCC
Confidence            4567788888888888888888888888877666 888766

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.15  E-value=1e-11  Score=57.96  Aligned_cols=38  Identities=18%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +.+++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS-SSSC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3556677777777777777777777777766555 6665

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.7e-11  Score=57.10  Aligned_cols=40  Identities=18%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eov_A            3 SGSSGTGEKP-YKCSDCGKSFTWKSRLRIHQKCHTGERHSG   42 (46)
T ss_dssp             CCCCCSSCCS-CBCSSSCCBCSSHHHHHHHHHHHSCCSSCC
T ss_pred             CCCCCCCCCC-ccCCccChhhCCHHHHHHHHHhcCCCCCCC
Confidence            5677788776 999999999999999999999999999984

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=57.44  Aligned_cols=40  Identities=15%  Similarity=0.261  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoq_A            3 SGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMVHTAEKPSG   42 (46)
T ss_dssp             CCCCSSSSCS-CCCSSSCCCCSSHHHHHHHHHHTTCCCSSS
T ss_pred             CCCCCCCCCC-cCCCcCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            5667777776 999999999999999999999999999984

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.2e-11  Score=57.71  Aligned_cols=38  Identities=21%  Similarity=0.434  Sum_probs=24.4

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGPS   44 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC-CCSC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3455666666666666666666666666666554 6664

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=57.95  Aligned_cols=40  Identities=15%  Similarity=0.192  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.++++ |.|.+|++.|...+.|..|+++|+++++|+
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoo_A            3 SGSSGSGERP-YGCNECGKNFGRHSHLIEHLKRHFREKSSG   42 (46)
T ss_dssp             CCCCCSCCCC-EECSSSCCEESSHHHHHHHHHHHHSTTSSC
T ss_pred             CCCCCCCCCC-EEccccCcccCCHHHHHHHHHHHcCCCCCC
Confidence            5677888777 999999999999999999999999999985

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.9e-11  Score=55.51  Aligned_cols=40  Identities=20%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytj_A            3 SGSSGTGEKP-YICAECGKAFTIRSNLIKHQKIHTKQKPSG   42 (46)
T ss_dssp             SSCTTSSCCS-EECSSSCCEESSHHHHHHHHHHTSCCCCSS
T ss_pred             cccCCCCCcC-eECCCCChhhCCHHHHHHHHHHcCCCCCCC
Confidence            6677888777 999999999999999999999999999984

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=57.54  Aligned_cols=40  Identities=13%  Similarity=0.134  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eq4_A            3 SGSSGTGEKL-YNCKECGKSFSRAPCLLKHERLHSGEKPSG   42 (46)
T ss_dssp             CCCCSSCCCC-CCBTTTTBCCSCHHHHHHHHHHCCSSSCCC
T ss_pred             CcccCCCCCC-eECCCCCCccCchHHHHHHHHhcCCCCCCC
Confidence            5677888777 999999999999999999999999999984

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=1.1e-11  Score=56.64  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             hHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          70 KFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        70 ~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      +.|.++++ |.|.+|++.|...+.|.+|+++|++++||
T Consensus         4 ~~H~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~~~k~~   40 (42)
T 2epc_A            4 GSSGGETP-YLCGQCGKSFTQRGSLAVHQRSCSQSGPS   40 (42)
T ss_dssp             SCCCSSCC-EECSSSCCEESSHHHHHHHHHHTTCCCCC
T ss_pred             ccCCCCCC-eECCCCCcccCCHHHHHHHhhhcCCCCCC
Confidence            34455454 66666666666666666666666666665

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.7e-11  Score=55.54  Aligned_cols=40  Identities=18%  Similarity=0.384  Sum_probs=32.1

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC-CSSCCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            4567788888888888888888888888887776 888776

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.1e-11  Score=57.73  Aligned_cols=40  Identities=15%  Similarity=0.162  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emy_A            3 SGSSGTGENP-YECHECGKAFSRKYQLISHQRTHAGEKPSG   42 (46)
T ss_dssp             CCCCCCSSCC-EECSSSCCEESSHHHHHHHHHHHTTSCCSC
T ss_pred             CCCCCCCCcC-cCCCCCCcccCcHHHHHHHHHHcCCCCCCC
Confidence            5677888777 999999999999999999999999999985

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.2e-11  Score=57.65  Aligned_cols=38  Identities=21%  Similarity=0.438  Sum_probs=25.2

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP-SGPS   44 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC-SCTT
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC-CCCC
Confidence            4556667777777777777777777766666555 6665

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.8e-11  Score=55.89  Aligned_cols=41  Identities=17%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC-CSSCCC
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34567788888888888888888888888877666 888766

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.2e-11  Score=56.20  Aligned_cols=41  Identities=12%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP-SGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC-CSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            45677888888888888888888888888888776 888876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.6e-11  Score=55.62  Aligned_cols=41  Identities=20%  Similarity=0.378  Sum_probs=34.2

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2en1_A            6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC-SCCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34677889999999999998899999888888776 888876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.2e-11  Score=56.19  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGPSSG   46 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS-SCCCCC
T ss_pred             CcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            34567778888888888888888888877777665 877765

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=57.02  Aligned_cols=38  Identities=26%  Similarity=0.528  Sum_probs=22.7

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC-CSCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            3455566666666666666666666666665554 6554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=57.16  Aligned_cols=38  Identities=13%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             HhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          69 KKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        69 ~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ++.|.++++ |.|.+|++.|.....|..|+++|+++++|
T Consensus         4 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2yu5_A            4 GSSGAGENP-FKCSKCDRVFTQRNYLVQHERTHARKSGP   41 (44)
T ss_dssp             SCCCSCCCS-EECSSSSCEESSSHHHHHHHHHCCCCCSS
T ss_pred             ccccCCCCC-eECCCCCchhCCHHHHHHHhHhcCCCCCC
Confidence            334444443 55555555555555555555555555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.3e-11  Score=57.55  Aligned_cols=37  Identities=19%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2ep1_A            8 TGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP-SGPS   44 (46)
T ss_dssp             SSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC-CSSS
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            445556666666666665566666555555444 5554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-11  Score=57.44  Aligned_cols=40  Identities=15%  Similarity=0.166  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emm_A            3 SGSSGTGERP-HKCNECGKSFIQSAHLIQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCSCSSCCCS-EECSSSCCEESSHHHHHHHHHHHSCCCTTS
T ss_pred             CcCCcCCCCC-eeCCCCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1e-11  Score=57.94  Aligned_cols=38  Identities=18%  Similarity=0.405  Sum_probs=25.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP-SGPS   44 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC-CSCC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC-CCCC
Confidence            3556667777777777777777777776666555 6665

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=57.13  Aligned_cols=36  Identities=19%  Similarity=0.490  Sum_probs=16.9

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      +++++|.|..|++.|.....|..|++.|.++++ |.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   43 (44)
T 2eof_A            8 TGEKPYECNECQKAFNTKSNLMVHQRTHTGESG-PSS   43 (44)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC-SCC
T ss_pred             CCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC-CCC
Confidence            344445555555555444444444444444333 444

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=57.89  Aligned_cols=38  Identities=13%  Similarity=0.276  Sum_probs=25.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPS   44 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS-SSCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3556667777777777777777777776666555 6665

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=9.5e-12  Score=57.41  Aligned_cols=38  Identities=18%  Similarity=0.164  Sum_probs=21.6

Q ss_pred             HhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          69 KKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        69 ~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|
T Consensus         4 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2en7_A            4 GSSGTGMKP-YVCNECGKAFRSKSYLIIHTRTHTGESGP   41 (44)
T ss_dssp             CCCSSSSSS-SCCTTTCCCCSSHHHHHHHHTTTCCSSSS
T ss_pred             CcCCCCCcC-eECCCCCCccCCHHHHHHHhhhcCCCCCC
Confidence            344444444 66666666666666666666666665555

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-11  Score=57.45  Aligned_cols=38  Identities=18%  Similarity=0.437  Sum_probs=26.6

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +.++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~~C~   44 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC-SSST
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC-CCCC
Confidence            3556677777777777777777777777776665 7765

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.6e-11  Score=55.98  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+.++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP-SGPSSG   46 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS-SCCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC-CCCCCC
Confidence            34677889999999999998889999888888776 888876

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8.3e-12  Score=57.09  Aligned_cols=36  Identities=19%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .|.++++ |.|..|++.|.....|.+|+++|++++||
T Consensus         5 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2en2_A            5 SSGGEKP-YKCETCGARFVQVAHLRAHVLIHTGSGPS   40 (42)
T ss_dssp             CCCSSCS-EECTTTCCEESSHHHHHHHTHHHHSCCSS
T ss_pred             ccCCCCC-EeCCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            3444443 55555555555555555555555555554

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=57.64  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emp_A            3 SGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVIHTGEKPSG   42 (46)
T ss_dssp             CCSCSSCCCS-EECSSSCCEESCHHHHHHHHHHHHCCSCCS
T ss_pred             cccccCCCcC-eECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.3e-11  Score=55.68  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC-SCCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4567778888888888888888888888777665 887766

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-11  Score=57.47  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGPS   44 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB-TTTB
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC-CCCC
Confidence            3455666666666666666666666666666554 6664

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.9e-11  Score=57.02  Aligned_cols=40  Identities=13%  Similarity=0.148  Sum_probs=36.0

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytm_A            3 SGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRLHTGQRPSG   42 (46)
T ss_dssp             SCCCCSSCCS-SSBTTTTBCCSSHHHHHHHHHHHHSCCCCC
T ss_pred             CCcCCCCCCC-cCCCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            4567777776 999999999999999999999999999985

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=57.70  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emh_A            3 SGSSGTGERP-YICTVCGKAFTDRSNLIKHQKIHTGEKPSG   42 (46)
T ss_dssp             CCCSCSCCCS-EECTTTCCEESSHHHHHHHHHHHHCSSCSS
T ss_pred             CCCCCCCCCC-cCCCCCCchhCCHHHHHHHHHhcCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=61.82  Aligned_cols=60  Identities=18%  Similarity=0.158  Sum_probs=51.0

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCce--------eeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSAL--------FMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +.|+.|. .|.....|..|++..+          .++++        |.|..|++.|.....|..|+++|.++++ |.|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H----------~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEH----------VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS-GPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTT----------TCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC-CSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhc----------cCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            4699999 8999999999988732          22333        8999999999999999999999999887 9986

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.3e-11  Score=56.21  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=21.0

Q ss_pred             hHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          70 KFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        70 ~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      +.|.+.++ |.|.+|++.|.....|..|+++|++++||
T Consensus         5 ~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (44)
T 2eou_A            5 SSGAAKTT-SECQECGKIFRHSSLLIEHQALHAGESGP   41 (44)
T ss_dssp             CSCSSSCC-CCCTTTCCCCSSHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCCcC-eECCCCCcccCCHHHHHHHHHHHCCCCCC
Confidence            34444444 66666666666666666666666665555

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.6e-11  Score=55.63  Aligned_cols=42  Identities=19%  Similarity=0.389  Sum_probs=35.1

Q ss_pred             cccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          42 FKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        42 ~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      ..++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC-CSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            345678889999999999999999999988888776 888876

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=57.77  Aligned_cols=38  Identities=18%  Similarity=0.422  Sum_probs=22.8

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC-CCCS
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC-CCCC
Confidence            3455566666666666666666666666665554 6654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=57.66  Aligned_cols=38  Identities=18%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP-SGPS   44 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC-CCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            3455566666666666666666666666655554 6554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.7e-11  Score=55.54  Aligned_cols=41  Identities=15%  Similarity=0.252  Sum_probs=33.4

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|+.|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC-SGPSSG   46 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS-SCCSCC
T ss_pred             cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34677888888888888888888888888888776 888776

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.5e-11  Score=55.67  Aligned_cols=40  Identities=15%  Similarity=0.350  Sum_probs=32.9

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC-SSCCCC
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4567788888888888888888888888888776 888876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.8e-11  Score=55.89  Aligned_cols=40  Identities=18%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC-CCSCCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            4567777888888888877778778777777665 777765

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-11  Score=57.38  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytk_A            3 SGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRIHTGEKPSG   42 (46)
T ss_dssp             CCCCSSSSCS-EECSSSCCEESSHHHHHHHHHHHSSSSCSS
T ss_pred             CcccCCCCCC-EeCCcCCCccCCHHHHHHHHHHHCCCCCCC
Confidence            5667788776 999999999999999999999999999984

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.7e-11  Score=55.95  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytg_A            6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS-SCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34677889999999999999999999988888776 988876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.12  E-value=1.2e-11  Score=57.60  Aligned_cols=40  Identities=18%  Similarity=0.210  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ema_A            3 SGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKIHTGEKPSG   42 (46)
T ss_dssp             SCSSCTTSCC-EECSSSCCEESSHHHHHHHHTGGGCCCCCS
T ss_pred             CccCCCCCcC-cCCCCCcchhCCHHHHHHHHHhcCCCCCCC
Confidence            5677888777 999999999999999999999999999984

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.12  E-value=9.6e-11  Score=56.83  Aligned_cols=54  Identities=19%  Similarity=0.351  Sum_probs=47.6

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +.|+.|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTH-----------TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHT-----------SSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhc-----------CCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            4699999 899999999998765           56789999999999999999999999887654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=9.2e-12  Score=56.97  Aligned_cols=39  Identities=23%  Similarity=0.470  Sum_probs=25.6

Q ss_pred             HhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          69 KKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        69 ~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            3 SGSSGGEKP-YPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             CSCCSSSCC-BCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             CcccCCCCC-EECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            344555554 777777777777777777777777776663

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.6e-11  Score=57.24  Aligned_cols=37  Identities=16%  Similarity=0.359  Sum_probs=21.4

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .+++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2emz_A            8 SGERPFKCNECGKGFGRRSHLAGHLRLHSREKS-SGPS   44 (46)
T ss_dssp             SCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC-CCSC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            455556666666666666666666666555544 5554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.5e-11  Score=57.34  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep2_A            3 SGSSGTGEKP-YECSICGKSFTKKSQLHVHQQIHTGEKPSG   42 (46)
T ss_dssp             SSSCSSCCCS-EECSSSCCEESSHHHHHHHHHTTSSCCSCC
T ss_pred             CCCCCCCCcC-cCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-11  Score=57.36  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2epw_A            3 SGSSGTGEKP-CKCTECGKAFCWKSQLIMHQRTHVDDKHSG   42 (46)
T ss_dssp             CCCCCCCCCS-EECSSSCCEESSSHHHHHHHHHCCSCCCSC
T ss_pred             CcccCCCCCC-eeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.1e-11  Score=57.39  Aligned_cols=39  Identities=18%  Similarity=0.116  Sum_probs=24.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      |++.|.++++ |.|.+|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            3 SGSSGSGEKP-YECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCS-EECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCcccCCCcC-eECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            3444555454 66666666666666666666666666665

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=57.67  Aligned_cols=40  Identities=18%  Similarity=0.318  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eml_A            3 SGSSGTGEKP-YECSVCGKAFSHRQSLSVHQRIHSGKKPSG   42 (46)
T ss_dssp             CCCCCSSCCS-EECSSSCCEESSHHHHHHHHGGGSSCCCSC
T ss_pred             ccCCcCCCCC-eeCCCcCCccCCHHHHHHHHHHhcCCCCCC
Confidence            5677888777 999999999999999999999999999984

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.3e-11  Score=57.58  Aligned_cols=38  Identities=24%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERP-SGPS   44 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC-SCSC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3455666666666666666666666666666554 6664

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.1e-11  Score=57.74  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytn_A            3 SGSSGTGKKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCSCCSS-CBCTTTCCBCSSHHHHHHHGGGTSCCCCCS
T ss_pred             CCcCCCCCcC-eECCCCCCeeCCHHHHHHHhhhcCCCCCCC
Confidence            5667788776 999999999999999999999999999984

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-11  Score=57.44  Aligned_cols=37  Identities=16%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2em6_A            8 MGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC-CCTT
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            445555555555555555555555555555444 5554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=57.09  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytd_A            3 SGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRIHTGYRPSG   42 (46)
T ss_dssp             CCCCSCCCCS-EECSSSCCEESSHHHHHHHHHHHTCCCSSC
T ss_pred             CccccCCCcC-eECCCCCCeeCChHHHHHHHHHcCCCCCCC
Confidence            5667778776 999999999999999999999999999985

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=57.07  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~~   46 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS-SCSSCC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4566777787788777777777777777777665 777653

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=57.62  Aligned_cols=37  Identities=19%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yti_A            8 TGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPS   44 (46)
T ss_dssp             SCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC-SSTT
T ss_pred             CCCcCeECCCCCcccCChhHHHHHhHhcCCCCC-CCCC
Confidence            445555555555555555555555555555444 5554

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=5.8e-12  Score=57.59  Aligned_cols=40  Identities=18%  Similarity=0.333  Sum_probs=25.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            2 SSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCSCCS-BCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CccccCCCCC-eeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            3445555554 666666666666666666666666666663

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.12  E-value=1.3e-11  Score=57.55  Aligned_cols=40  Identities=15%  Similarity=0.212  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em0_A            3 SGSSGMGEKT-WKCRECDMCFSQASSLRLHQNVHVGEKPSG   42 (46)
T ss_dssp             CCCCSCCCCC-CCCSSSCCCCSSHHHHHHHGGGGSSSSCSC
T ss_pred             CcCccCCCcC-eECCCCCcccCCHHHHHHHHHHcCCCCCcC
Confidence            5677788777 999999999999999999999999999985

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.9e-11  Score=56.97  Aligned_cols=40  Identities=13%  Similarity=0.039  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||+
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yso_A            3 SGSSGSREKS-HQCRECGEIFFQYVSLIEHQVLHMGQKNSG   42 (46)
T ss_dssp             CSCCSSCCCC-EECTTTCCEESSHHHHHHHHHHHSCCSCCC
T ss_pred             cccccCCCCC-EEccccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1e-11  Score=57.94  Aligned_cols=38  Identities=18%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC-CSSC
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            4556677777777777777777777777766555 7665

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1e-11  Score=57.90  Aligned_cols=41  Identities=17%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~   46 (46)
T 2ep3_A            6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCC-CCTTCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34567778888888888888888888887777665 877654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.3e-11  Score=57.55  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoe_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLANHQRIHTGVKPSG   42 (46)
T ss_dssp             CSSCCCCCCS-SEETTTTEECSSHHHHHHHHGGGSCCCSCS
T ss_pred             CCCCCCCCCC-eECCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            5667788776 999999999999999999999999999985

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.4e-11  Score=57.45  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2epz_A            3 SGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRIHTGEKPSG   42 (46)
T ss_dssp             CCSSCCCCCS-BCCTTTCCCBSSHHHHHHHHTTTTTCCCCS
T ss_pred             CCCCcCCCCC-eECCCCCceeCCHHHHHHHHHHhCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.2e-11  Score=57.62  Aligned_cols=40  Identities=15%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||+
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2yu8_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRRVHTGGKPSG   42 (46)
T ss_dssp             CCCCCCCCSS-EECSSSCCEESSSHHHHHHTHHHHSCCCSC
T ss_pred             cCcCCCCCCC-eECCcCCchhCCHHHHHHHHHhcCCCCCCC
Confidence            5667788776 999999999999999999999999999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.3e-11  Score=57.57  Aligned_cols=37  Identities=19%  Similarity=0.464  Sum_probs=22.7

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eq1_A            8 TGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP-SGPS   44 (46)
T ss_dssp             CCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC-SSCC
T ss_pred             CCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            455566666666666666666666666665554 6654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=9.3e-12  Score=58.08  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emf_A            3 SGSSGTGGKH-FECTECGKAFTRKSTLSMHQKIHTGEKPSG   42 (46)
T ss_dssp             CCSSSSSSCC-EECSSSCCEESCHHHHHHHGGGTSCSSCSC
T ss_pred             cccccCCCCC-eECCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5677888777 999999999999999999999999999985

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.4e-11  Score=57.34  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eop_A            3 SGSSGTGEKP-HECRECGKSFSFNSQLIVHQRIHTGENPSG   42 (46)
T ss_dssp             CCCSCCCCCS-CBCTTTCCBCSSHHHHHHHHTTTTTSCCSC
T ss_pred             CccccCCCCC-eeCCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            5667788776 999999999999999999999999999984

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.6e-11  Score=57.22  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytr_A            3 SGSSGTGEKP-YKCNECGKAFSQTSKLARHQRIHTGEKPSG   42 (46)
T ss_dssp             SSCCCSSCCT-TCCTTTCCCCSSHHHHHHHHTTTTTCSCCC
T ss_pred             CCcCCCCCcC-cCCCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            5677888777 999999999999999999999999999984

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.7e-11  Score=57.19  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytq_A            3 SGSSGAGEKP-YGCSECGKAFSSKSYLIIHMRTHSGEKPSG   42 (46)
T ss_dssp             CSSCSSCCCS-CBCSSSCCBCSCHHHHHHHHTTTCCSCSSC
T ss_pred             CCcCcCCCCC-cCCCccChhhCChHHHHHHHHHhCCCCCCC
Confidence            5667788777 999999999999999999999999999984

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=6.7e-11  Score=55.03  Aligned_cols=40  Identities=23%  Similarity=0.271  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ep3_A            3 SGSSGTGEKP-YRCAECGKAFTDRSNLFTHQKIHTGEKPSG   42 (46)
T ss_dssp             CCSSSSCCCS-EECSSSCCEESSHHHHHHHHTTTTTSCCCC
T ss_pred             CCCCCCCCCC-eECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            5677888776 999999999999999999999999999985

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.1e-11  Score=57.25  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=16.9

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      ++++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   43 (44)
T 2eoj_A            8 TGENPYECCECGKVFSRKDQLVSHQKTHSGQSG-PSS   43 (44)
T ss_dssp             SSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS-CCC
T ss_pred             CCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC-CCC
Confidence            344444555555555444444444444444333 444

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.4e-11  Score=57.39  Aligned_cols=38  Identities=21%  Similarity=0.428  Sum_probs=24.0

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP-SGPS   44 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS-SCCC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3455666666666666666666666666666554 6664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=2.1e-10  Score=57.98  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             cCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcCCC
Q psy3491          10 VNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEA   77 (108)
Q Consensus        10 ~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~   77 (108)
                      ..+.|++|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|+++++
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~H-----------~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIH-----------CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGG-----------CCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHc-----------CCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            446999999 899999999998765           567889999999999999999999999998665

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.7e-11  Score=57.13  Aligned_cols=40  Identities=13%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2elz_A            3 SGSSGSVEKP-YKCEDCGKGYNRRLNLDMHQRVHMGEKTSG   42 (46)
T ss_dssp             CCSCCCCCSS-CBCSSSCCBCSSHHHHHHHGGGGGSCCCCC
T ss_pred             CCCCCCCCCC-eeCcccCchhCCHHHHHHHHHhcCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.4e-11  Score=57.49  Aligned_cols=38  Identities=16%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGPS   44 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS-CTTS
T ss_pred             CCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCC-CCCC
Confidence            4556666666666666666666666666666554 6665

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.4e-11  Score=57.41  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2en3_A            7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP-SGPS   44 (46)
T ss_dssp             SCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC-SSCS
T ss_pred             cCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3456667777777777777777777766666555 6664

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.6e-11  Score=57.30  Aligned_cols=38  Identities=21%  Similarity=0.449  Sum_probs=24.9

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +.+++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGPS   44 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC-SSCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            3456667777777777776667777666666555 6664

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=57.32  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq0_A            3 SGSSGTGEKP-YKCHECGKVFRRNSHLARHQLIHTGEKPSG   42 (46)
T ss_dssp             CCCCTTCCCC-EECTTTCCEESSHHHHHHHHTTTCCCCCSC
T ss_pred             CCcCCCCCCC-eECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            5667788777 999999999999999999999999999984

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2e-11  Score=56.82  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|++|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eme_A            3 SGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCTTCCCCS-EECSSSCCEESSHHHHHHHHGGGCCCSCCS
T ss_pred             CCCCCCCCCC-eECCCCChhhCCHHHHHHHHHhcCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.2e-11  Score=57.62  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ene_A            3 SGSSGTGEKP-YKCNECGKVFRHNSYLSRHQRIHTGEKPSG   42 (46)
T ss_dssp             CCSSCCCSSS-EECSSSCCEESSHHHHHHHHTTTCCCCCCS
T ss_pred             cccCCCCCCC-eECCCCCchhCChHHHHHHHhhcCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.2e-10  Score=54.20  Aligned_cols=40  Identities=15%  Similarity=0.288  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em2_A            3 SGSSGSGEKP-FKCKECGKAFRQNIHLASHLRIHTGEKPSG   42 (46)
T ss_dssp             CCCSCCCCCS-EECSSSCCEESSHHHHHHHHHHHCCCCSSC
T ss_pred             CCCCCCCCCC-EECCcCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.09  E-value=1.1e-11  Score=57.76  Aligned_cols=40  Identities=18%  Similarity=0.130  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|...+.|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2el4_A            3 SGSSGTGVKP-YGCSQCAKTFSLKSQLIVHQRSHTGVKPSG   42 (46)
T ss_dssp             CCCCSCCCCS-EECSSSSCEESSHHHHHHHGGGSSSCCCSC
T ss_pred             cccCCCCCCc-eECCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5677888776 999999999999999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.4e-11  Score=57.39  Aligned_cols=38  Identities=18%  Similarity=0.447  Sum_probs=25.6

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS-SCSC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            3556667777777777777777777777666555 6665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2e-11  Score=56.89  Aligned_cols=40  Identities=18%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|..|+++|++++||+
T Consensus         3 h~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en6_A            3 SGSSGSGEKP-YGCNECGKTFSQKSILSAHQRTHTGEKPSG   42 (46)
T ss_dssp             CSCCCCSSCC-EEETTTTEEESSHHHHHHHHHHHSSCCCSS
T ss_pred             CCCccCCCcC-eECCCCCcccCchHHHHHHHHHcCCCCCCC
Confidence            5667788777 999999999999999999999999999985

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.3e-11  Score=57.46  Aligned_cols=38  Identities=21%  Similarity=0.529  Sum_probs=27.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +.++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p-~~C~   44 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS-SCCC
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC-cCCC
Confidence            4566777777777777777777777777776665 7765

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.3e-11  Score=56.70  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=36.0

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2enc_A            3 SGSSGSGEKP-FKCEECGKGFYTNSQCYSHQRSHSGEKPSG   42 (46)
T ss_dssp             CSSCCCCCCS-EECSSSCCEESSHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCCCCCCC-cCCCCCCCcCCChHHHHHHHHHhCCCCCCC
Confidence            4567777776 999999999999999999999999999984

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.7e-11  Score=57.14  Aligned_cols=38  Identities=18%  Similarity=0.468  Sum_probs=25.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP-SGPS   44 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC-CCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            4556667777777777777777777766666555 6664

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.6e-11  Score=57.26  Aligned_cols=40  Identities=15%  Similarity=0.190  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em7_A            3 SGSSGTGEKP-YKCEECGKGFICRRDLYTHHMVHTGEKPSG   42 (46)
T ss_dssp             CCCSSSCCCS-EECSSSCCEESCHHHHHHHGGGGTTCCCSS
T ss_pred             CCCCCCCCcC-ccCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.3e-11  Score=57.06  Aligned_cols=36  Identities=25%  Similarity=0.435  Sum_probs=18.0

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      ++++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C   43 (44)
T 2eox_A            8 TDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG-PSS   43 (44)
T ss_dssp             CCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC-CSC
T ss_pred             CCCCCeECcccCcccCCHHHHHHHHHHhCCCCC-CCC
Confidence            344455555555555555555555555544443 443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=8.6e-11  Score=54.83  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHh-HHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKK-FECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~-~~~~~~~~~~c~~C   84 (108)
                      .+.+++||.|..|++.|.....|..|++ .|.++++ |.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~-~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGPSSG   47 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS-SSCCCC
T ss_pred             ccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC-CCCCCC
Confidence            3456778888888888888888888887 7777665 888766

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.08  E-value=2.5e-10  Score=60.22  Aligned_cols=52  Identities=23%  Similarity=0.352  Sum_probs=45.9

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHh-HHhc
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKK-FECG   74 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~-~~~~   74 (108)
                      ..|++|. .|.....|..|++++           .+++||.|..|++.|.....|..|++ .|.+
T Consensus        29 h~C~~Cgk~F~~~~~L~~H~~~H-----------~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           29 HLCPVCGESFASKGAQERHLRLL-----------HAAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             EECTTSCCEESSHHHHHHHHHTT-----------SCSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             EECCCCCCCcCcHHHHhhhhhhc-----------cCCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            4899999 899999999999876           57889999999999999999999974 5554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3e-11  Score=56.32  Aligned_cols=40  Identities=18%  Similarity=0.274  Sum_probs=35.8

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em8_A            3 SGSSGSGEKP-YKCVECGKGYKRRLDLDFHQRVHTGEKLSG   42 (46)
T ss_dssp             CCCCCCSCCS-EECSSSCCEESSHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCCCCC-eECcccCchhCCHHHHHHHHHHHcCCCCCC
Confidence            4566777776 999999999999999999999999999984

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.08  E-value=1.9e-11  Score=56.96  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em9_A            3 SGSSGTGEKP-YNCKECGKSFRWASCLLKHQRVHSGEKPSG   42 (46)
T ss_dssp             SCCSCCCCCS-EECSSSCCEESSHHHHHHHGGGGTSCCCCS
T ss_pred             CCCCCCCCcC-eECCccccccCChHHHHHHHHHhCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.6e-11  Score=57.25  Aligned_cols=40  Identities=20%  Similarity=0.176  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em5_A            3 SGSSGSSTKS-HQCHECGRGFTLKSHLNQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCSCS-EECSSSCCEESSHHHHHHHHTTTSCSCCSS
T ss_pred             CcCCCCCCCC-eECCcCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.7e-11  Score=57.11  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en8_A            3 SGSSGSGEKS-HTCDECGKNFCYISALRIHQRVHMGEKCSG   42 (46)
T ss_dssp             CCCCCCCCSS-EECTTTCCEESSHHHHHHHHTTTCCSCSSC
T ss_pred             ccccCCCCCC-eECCCcCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.9e-11  Score=56.95  Aligned_cols=40  Identities=15%  Similarity=0.292  Sum_probs=36.5

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2en1_A            3 SGSSGSGEKP-FKCEECGKRFTQNSQLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             STTCCCCCCS-EEETTTTEEESSHHHHHHHGGGGSCCCCSC
T ss_pred             cccCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            5677888777 999999999999999999999999999984

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.07  E-value=2.7e-11  Score=56.47  Aligned_cols=40  Identities=15%  Similarity=0.198  Sum_probs=36.0

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2el6_A            3 SGSSGAGVNP-YKCSQCEKSFSGKLRLLVHQRMHTREKPSG   42 (46)
T ss_dssp             SCCSSCCCCS-EECSSSSCEESSHHHHHHHHGGGCCSSCCS
T ss_pred             CCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            4567778776 999999999999999999999999999984

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.9e-11  Score=56.94  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=24.2

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +++++||.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPS   44 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC-CCSC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3455666666666666666666666666666554 6664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.9e-11  Score=56.45  Aligned_cols=36  Identities=19%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   43 (44)
T 2emb_A            8 HTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG-PSS   43 (44)
T ss_dssp             CCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC-TTC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCC
Confidence            445566666666666666666666666655544 555

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.05  E-value=1e-10  Score=52.55  Aligned_cols=34  Identities=18%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             cCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          74 GKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        74 ~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ++++ |.|.+|++.|...+.|..|+++|+++++|+
T Consensus         3 ~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            3 PPRS-YTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CSSS-EECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCc-eECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            3344 777777777777777777777777777764

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.9e-11  Score=57.00  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ysp_A            3 SGSSGTGEKP-YKCEKCGKGYNSKFNLDMHQKVHTGERPSG   42 (46)
T ss_dssp             CCCCCSSCCS-EEETTTTEEESCHHHHHHHHTTSCSCCSSC
T ss_pred             CCcCCCCCCC-eECCCCCCccCCHHHHHHHHHhhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.1e-10  Score=54.42  Aligned_cols=38  Identities=13%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      +.++++|.|..|++.|.....|..|++.|.++++ |.|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC-SSCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC-CCCC
Confidence            3455666666666666666666666666666554 6654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.7e-11  Score=56.11  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=36.0

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHH-HhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMA-IRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~-~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|++ +|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~   43 (47)
T 2epx_A            3 SGSSGTGKKP-YECIECGKAFIQNTSLIRHWRYYHTGEKPSG   43 (47)
T ss_dssp             CCCCCCCCCS-BCCSSSCCCBSSHHHHHHHHTTTTTTSCSSS
T ss_pred             cccccCCCCC-EECCccCchhCChHHHHHHhHhhcCCCCCCC
Confidence            5667788776 999999999999999999999 999999984

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=2.7e-11  Score=56.47  Aligned_cols=38  Identities=18%  Similarity=0.412  Sum_probs=24.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhc-CCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECG-KEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~-~~~~~~c~   82 (108)
                      +.+++||.|..|++.|.....|..|++.|.+ +++ |.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~-~~C~   45 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS-GPSS   45 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTT-SSSC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCC-CCCC
Confidence            3455666666666666666666666666666 555 6664

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.8e-11  Score=57.08  Aligned_cols=40  Identities=13%  Similarity=0.246  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytg_A            3 SGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCCCSSCCS-EECTTTCCEESSSHHHHTTGGGGSSCCSSC
T ss_pred             CCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.03  E-value=2.5e-10  Score=55.30  Aligned_cols=52  Identities=21%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHh
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      .+.|++|. .|.....|..|++.+           .+++||.|..|++.|.....|..|++.++
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTH-----------TGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHH-----------HCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CccCCCCcchhCChHHHHHHHHHc-----------CCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            35899999 899999999998865           56789999999999999999999999875

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.2e-10  Score=52.62  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eow_A            3 SGSSGTGEKP-YKCNECGKAFRARSSLAIHQATHSGEKPSG   42 (46)
T ss_dssp             CCCCSCCCCC-EECTTSCCEESSHHHHHHHHHHHCCCSCSC
T ss_pred             ccCCCCCCCC-eeccccCChhcCHHHHHHHHHHcCCCCCCC
Confidence            5667778777 999999999999999999999999999985

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=3.3e-10  Score=52.66  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em4_A            3 SGSSGTGQRP-YECIECGKAFKTKSSLICHRRSHTGEKPSG   42 (46)
T ss_dssp             SCCCCCCSSS-EECSSSCCEESSHHHHHHHHHHHSSSSCCC
T ss_pred             CccccCCCcC-cCCCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            5677888776 999999999999999999999999999985

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.02  E-value=4.7e-10  Score=56.99  Aligned_cols=54  Identities=17%  Similarity=0.249  Sum_probs=48.2

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      .+.|++|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|.++
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRVH-----------TGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHGG-----------GCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHhc-----------CCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            46999999 899999999998765           4678999999999999999999999999874

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=2.2e-10  Score=52.57  Aligned_cols=38  Identities=18%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |.|.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS-GPSS   42 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC-SSSC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC-ccCC
Confidence            3455566666666666666666666666665554 6554

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.02  E-value=3.7e-10  Score=48.90  Aligned_cols=31  Identities=23%  Similarity=0.522  Sum_probs=27.6

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ||.|.+|++.|...+.|..|+++|+++++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            4899999999999999999999999999873

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.02  E-value=3.9e-10  Score=52.41  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emj_A            3 SGSSGTGEKP-FECAECGKSFSISSQLATHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCS-EECSSSSCEESSHHHHHHHHHHHTTSCSSS
T ss_pred             CCCCCCCCCC-EECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5667788776 999999999999999999999999999984

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4e-10  Score=52.35  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|..|+++|++++||.
T Consensus         3 h~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en9_A            3 SGSSGAGKKL-FKCNECKKTFTQSSSLTVHQRIHTGEKPSG   42 (46)
T ss_dssp             CCSSCCSSCC-CBCTTTCCBCSSHHHHHHHHHHHTSSCCCS
T ss_pred             CCCCCCCCCC-EECCccCcccCCHHHHHHHHHHcCCCCCCC
Confidence            5667778777 999999999999999999999999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=3.3e-10  Score=51.96  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (43)
T 2yrm_A            4 GSSGNGA-FFCNECDCRFSEEASLKRHTLQTHSDKSGP   40 (43)
T ss_dssp             CCSSSCC-BCCSSSCCCBSSHHHHHHHHHHHTCTTCSS
T ss_pred             CcCCCCC-EECCCCCCeeCChHHHHHHHHhhCCCCCcc
Confidence            4566666 999999999999999999999999999984

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.01  E-value=5.5e-11  Score=59.04  Aligned_cols=48  Identities=19%  Similarity=0.455  Sum_probs=40.5

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhH
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNL   94 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l   94 (108)
                      .+++++||.|+.|++.|.....|.   +.|.+.++ |.|..|++.|....++
T Consensus         8 ~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~-~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            8 DSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGT-FRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHH---HEETTTTE-EBCSSSCCBCEECTTC
T ss_pred             HcCCCCCccCCCCCchhccHHHhH---hhcCCCCC-EECCCCCCccccCccc
Confidence            457889999999999999887775   67888776 9999999999877654

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.1e-10  Score=51.90  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||+
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   42 (46)
T 2eor_A            3 SGSSGTGEKP-YNCEECGKAFIHDSQLQEHQRIHTGEKPSG   42 (46)
T ss_dssp             SSSSSSCCCS-EECTTTCCEESSHHHHHHHHHHHHSCCCSS
T ss_pred             CCcCcCCCcC-ccCCCCCCCcCCHHHHHHHHHhcCCCCCCC
Confidence            5677888776 999999999999999999999999999985

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.3e-10  Score=51.52  Aligned_cols=35  Identities=17%  Similarity=0.357  Sum_probs=26.4

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      .|.+.++ |.|..|++.|.....|..|+++|++++|
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRS-YSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCC-CEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCC-cCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3455555 8888888888888888888888887765

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3e-10  Score=52.57  Aligned_cols=39  Identities=26%  Similarity=0.553  Sum_probs=29.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC-CCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC-CCCC
Confidence            34567778888888888888888888888777665 7775

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=9.7e-11  Score=53.16  Aligned_cols=33  Identities=27%  Similarity=0.686  Sum_probs=16.2

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEA   77 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~   77 (108)
                      ++++||.|..|++.|.....|..|++.|.++++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             CCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            344455555555555555555555554444443

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5.4e-10  Score=51.86  Aligned_cols=40  Identities=15%  Similarity=0.260  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em3_A            3 SGSSGTGEKP-YECKVCSKAFTQKAHLAQHQKTHTGEKPSG   42 (46)
T ss_dssp             CCCCCSSCCS-EECSSSCCEESSHHHHHHHHHHHCCCCCCC
T ss_pred             CCCCCCCCcC-eECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5667788776 999999999999999999999999999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.3e-10  Score=54.08  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=34.2

Q ss_pred             hHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          70 KFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        70 ~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         5 ~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytt_A            5 SSGEGEKP-YQCSECGKSFSGSYRLTQHWITHTREKPSG   42 (46)
T ss_dssp             SSCSCCCT-TCCSSSCCCCSSHHHHHHHHTHHHHCCCCS
T ss_pred             CCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            45677676 999999999999999999999999999984

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.1e-10  Score=52.72  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enf_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLVRHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCS-CBCSSSCCBCSSHHHHHHHHTTTTTSSCCC
T ss_pred             CCcCCCCCcC-eECCCCCcccCCHHHHHHHHHhhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.6e-10  Score=52.49  Aligned_cols=40  Identities=20%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|..|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytp_A            3 SGSSGTGERH-YECSECGKAFARKSTLIMHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCSSCCCCC-EECSSSCCEESSHHHHHHHHTTTSCCCCCS
T ss_pred             cccCcCCCCC-eECCcCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5677888777 999999999999999999999999999984

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5e-10  Score=51.97  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emi_A            3 SGSSGTGERH-YECSECGKAFIQKSTLSMHQRIHRGEKPSG   42 (46)
T ss_dssp             CCCSCSSCCC-EECSSSCCEESSHHHHHHHHGGGCSCCCCS
T ss_pred             CCcccCCCCC-CCCCCCCcccCCHHHHHHHHhHhCCCCCCC
Confidence            5677888777 999999999999999999999999999984

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.1e-10  Score=52.25  Aligned_cols=40  Identities=20%  Similarity=0.212  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~   42 (46)
T 2yts_A            3 SGSSGTGEKP-YICNECGKSFIQKSHLNRHRRIHTGEKPSG   42 (46)
T ss_dssp             CSCCCCSCCS-EECSSSCCEESSHHHHHHHGGGTSSCCSSC
T ss_pred             CCCCCCCCcC-EECCCCChhhCChHHHHHHHHhcCCCCCcC
Confidence            5667778776 999999999999999999999999999985

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.4e-10  Score=52.52  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytf_A            3 SGSSGTGEKP-FECSECQKAFNTKSNLIVHQRTHTGEKPSG   42 (46)
T ss_dssp             CCCSSCCCCS-EECSSSCCEESSHHHHHHHHHTSCSSSSSC
T ss_pred             CCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5667777776 999999999999999999999999999984

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4e-10  Score=52.31  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2emg_A            3 SGSSGTGENP-FICSECGKVFTHKTNLIIHQKIHTGERPSG   42 (46)
T ss_dssp             CCCCCCSCCS-CBCTTTCCBCSSHHHHHHHHTTTSCCCCSC
T ss_pred             CCCCCCCCCC-EECCccCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5667777776 999999999999999999999999999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.7e-10  Score=52.14  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             hHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          70 KFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        70 ~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +.|.+.++ |.|.+|++.|.....|..|+++|++++||.
T Consensus         5 ~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eom_A            5 SSGHGERG-HRCSDCGKFFLQASNFIQHRRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSS-CCCSSSCCCCSSHHHHHHHHHHHSSCCCSS
T ss_pred             CCCCCCCC-cCCCCCCCeeCChHHHHHHHHHhCCCCCCC
Confidence            45667676 999999999999999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=6.5e-10  Score=51.62  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoz_A            3 SGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRVHTQETLSG   42 (46)
T ss_dssp             SCCCCSSCCS-EEETTTTEEESSHHHHHHHHHHHSSCCSSS
T ss_pred             ccccCCCCCC-eECcccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            5677888776 999999999999999999999999999984

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.98  E-value=4.6e-10  Score=51.05  Aligned_cols=39  Identities=18%  Similarity=0.398  Sum_probs=34.9

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|.
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESG-PSSG   42 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS-CCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC-CCCC
Confidence            35678999999999999999999999999999776 9874

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4e-10  Score=52.31  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=36.3

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq2_A            3 SGSSGTGGKP-YQCNECGKAFSQTSKLARHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCSSSSSCS-SSCCSSCCCCSSHHHHHHHGGGGCCCCCCC
T ss_pred             cccccCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            5667888776 999999999999999999999999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.6e-10  Score=51.05  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP-SSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS-SCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC-CCC
Confidence            45688999999999999999999999999999876 876

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=6.3e-10  Score=51.67  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yto_A            3 SGSSGTGEKP-YKCSDCGKAFTRKSGLHIHQQSHTGERHSG   42 (46)
T ss_dssp             CCCCCCSCCC-EECSSSCCEESSHHHHHHHHHHHTCCCBTT
T ss_pred             cccccCCCCC-EECcccCCccCCHhHHHHHHHHcCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.6e-10  Score=52.55  Aligned_cols=40  Identities=15%  Similarity=0.255  Sum_probs=36.0

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eon_A            3 SGSSGTGEKP-YKCQVCGKAFRVSSHLVQHHSVHSGERPSG   42 (46)
T ss_dssp             CSSSCSSCCS-CBCSSSCCBCSSHHHHHHHTTTTTSCCSCT
T ss_pred             CCCCCCCCcc-cCCCCCCcccCcHHHHHHHHHhcCCCCCCC
Confidence            4567778776 999999999999999999999999999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=7e-11  Score=54.76  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=34.0

Q ss_pred             hHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          70 KFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        70 ~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         5 ~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (45)
T 2epu_A            5 SSGTGQKP-FECTHCGKSFRAKGNLVTHQRIHTGEKSGP   42 (45)
T ss_dssp             CCCCSCCS-EEETTTTEEESSHHHHHHHHTTTSSCCCCC
T ss_pred             CCCCCCcC-ccCCCCCCccCChHHHHHHHHHhCCCCCCC
Confidence            45667676 999999999999999999999999999984

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.6e-10  Score=51.77  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep1_A            3 SGSSGTGEKP-YECSDCGKSFIKKSQLHVHQRIHTGENPSG   42 (46)
T ss_dssp             CCCCCSSCCS-SCCSSSCCCCSSHHHHHHHHGGGSSSCCCS
T ss_pred             cccCCCCCCC-cCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5667788776 999999999999999999999999999984

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.4e-10  Score=52.56  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yti_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCSCCCT-TCCSSSCCCCSSHHHHHHHHTTTSCSCCSS
T ss_pred             CCcCCCCCcC-eECCCCCcccCChhHHHHHhHhcCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.8e-10  Score=51.79  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yth_A            3 SGSSGSGEKP-FQCEECGKRFTQNSHLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             CCSCCCCSSS-BCCSSSCCCBSSHHHHHHHGGGGTTCCCSS
T ss_pred             cccCCCCCcC-CCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            5667777776 999999999999999999999999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.1e-10  Score=51.02  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .|.++++ |.|.+|++.|.....|..|+++|++++||.
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            4 GSSGQRV-YECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SCCCCCC-EECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             ccCCCCC-eECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            4566666 999999999999999999999999999985

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=7.3e-10  Score=50.84  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eof_A            3 SGSSGTGEKP-YECNECQKAFNTKSNLMVHQRTHTGESGPS   42 (44)
T ss_dssp             CSSCCSCCCS-EECTTTCCEESCHHHHHHHHHHTTTSSCSC
T ss_pred             CccCCCCCCC-eECCCCCcccCCHhHHHHHHHHhCCCCCCC
Confidence            5667788776 999999999999999999999999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.4e-10  Score=51.91  Aligned_cols=40  Identities=15%  Similarity=0.298  Sum_probs=35.6

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enh_A            3 SGSSGTGEKP-YECDVCRKAFSHHASLTQHQRVHSGEKPSG   42 (46)
T ss_dssp             CCCCCCCSSS-CBCTTTCCBCSSSHHHHHHGGGSCCSCCCC
T ss_pred             CCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            4566777776 999999999999999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.8e-10  Score=51.72  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yrj_A            3 SGSSGTGEKP-YRCGECGKAFAQKANLTQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCC-EECSSSCCEESSHHHHHHHHTTTSSCCSSC
T ss_pred             CccCCCCCCC-eECCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.96  E-value=6.2e-10  Score=50.57  Aligned_cols=38  Identities=18%  Similarity=0.395  Sum_probs=34.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~-~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP-SSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC-CCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC-CCC
Confidence            35678899999999999999999999999999877 876

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=5.5e-10  Score=52.23  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             ccCCCceeecc--chhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          43 KPLQSALFMCE--SCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        43 ~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      .++++++|.|.  .|++.|.....|..|++.|.++++ |.|..|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS-CSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            45678889997  899999999999999988888776 988876

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.5e-10  Score=51.62  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=36.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.++++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eoj_A            3 SGSSGTGENP-YECCECGKVFSRKDQLVSHQKTHSGQSGPS   42 (44)
T ss_dssp             SCCSSSSCCS-CEETTTTEECSSHHHHHHHHTTSSSSCSCC
T ss_pred             CccccCCCcC-eeCCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            5677888777 999999999999999999999999999984

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=5.9e-10  Score=51.76  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em6_A            3 SGSSGMGEKC-YKCDVCGKEFSQSSHLQTHQRVHTGEKPSG   42 (46)
T ss_dssp             CCSCCCCCCC-CBCSSSCCBCSSHHHHHHHHTTTSSSCCCC
T ss_pred             CccccCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            5667778777 999999999999999999999999999985

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=7.3e-10  Score=51.44  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emz_A            3 SGSSGSGERP-FKCNECGKGFGRRSHLAGHLRLHSREKSSG   42 (46)
T ss_dssp             CCSCSSCCCS-CCCSSSCCCCSSHHHHHHHHHHHHHTTCCC
T ss_pred             CCcCCCCCCC-eECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5667788776 999999999999999999999999999985

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2e-10  Score=53.36  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=34.7

Q ss_pred             HhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          69 KKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        69 ~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      ++.|.++++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         4 ~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep0_A            4 GSSGTGEKP-YKCDVCHKSFRYGSSLTVHQRIHTGEKPSG   42 (46)
T ss_dssp             CCSSTTCCS-EECSSSCCEESSHHHHHHHHTTTSSSCCCS
T ss_pred             CCCCCCCCC-eeCcccCcccCChHHHHHHHHHhCCCCCCC
Confidence            355677776 999999999999999999999999999984

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.8e-10  Score=50.44  Aligned_cols=39  Identities=18%  Similarity=0.374  Sum_probs=34.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|.
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG-PSSG   42 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS-CCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            35678999999999999999999999999998776 8873

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.4e-10  Score=51.61  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq1_A            3 SGSSGTGEKP-YKCNECGKAFRAHSNLTTHQVIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCSCC-CCCTTTTCCCSSHHHHHHHHTTTCCSCCSS
T ss_pred             cccccCCCCC-eECCcCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            5667778777 999999999999999999999999999984

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.1e-10  Score=51.39  Aligned_cols=39  Identities=18%  Similarity=0.396  Sum_probs=34.9

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .++++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG-PSSG   44 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS-SCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC-CCCC
Confidence            45678999999999999999999999999998776 9884

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.8e-10  Score=60.39  Aligned_cols=59  Identities=20%  Similarity=0.295  Sum_probs=51.1

Q ss_pred             CccCCCCC-CCc-ChhHHHHHhhhcCCCCCccccccCC-CceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          11 NIVDPVCP-AFV-DAPWLYFLLYSFSSGASFSSFKPLQ-SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        11 ~~~~~~c~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+.|++|. .|. ....|..|++.+           .+ +++|.|..|++.|.....|..|++.|+++++ ...
T Consensus        24 ~~~C~~C~k~f~~~~~~L~~H~~~h-----------~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp-~~~   85 (98)
T 2gqj_A           24 EAVCPTCNVVTRKTLVGLKKHMEVC-----------QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP-SDA   85 (98)
T ss_dssp             CCCCTTTCCCCSSCSHHHHHHHHHH-----------HHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS-SCC
T ss_pred             CcCCCCCCCChhhhHHHHHHHHHHH-----------cCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC-CCC
Confidence            45899999 899 999999998876           34 6799999999999999999999999998776 544

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.7e-10  Score=51.81  Aligned_cols=40  Identities=15%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoh_A            3 SGSSGSGKKP-YECKECRKTFIQIGHLNQHKRVHTGERSSG   42 (46)
T ss_dssp             CCCSCCCSCS-CCCSSSCCCCSSHHHHHHHHHHCSSCCSCS
T ss_pred             CCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5667777776 999999999999999999999999999984

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.93  E-value=1.3e-09  Score=53.27  Aligned_cols=52  Identities=27%  Similarity=0.468  Sum_probs=45.2

Q ss_pred             ccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHH-hHHhc
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHK-KFECG   74 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~-~~~~~   74 (108)
                      +.|+.|. .|.....|..|++.+           .++++|.|..|++.|.....|..|+ ..|.+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSH-----------TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTT-----------TSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCCCCccccCCHHHHHHHHHHh-----------CCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            5799999 899999999998765           5678999999999999999999996 56654

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=6.1e-10  Score=51.71  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=35.9

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcC-CCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ-NGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~-~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++ +++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~   43 (46)
T 2eoy_A            3 SGSSGQKEKC-FKCNKCEKTFSCSKYLTQHERIHTRGVKSGP   43 (46)
T ss_dssp             CCCCCCCSCC-EECSSSCCEESSSHHHHHHHTTCCSCCTTSS
T ss_pred             CccccCCCCC-EECcCCCCcCCCHHHHHHHHHHcCCCCCCCC
Confidence            5667777776 9999999999999999999999999 99984

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=9.2e-10  Score=50.57  Aligned_cols=40  Identities=10%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|..|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2emb_A            3 SGSSGHTRKR-YECSKCQATFNLRKHLIQHQKTHAAKSGPS   42 (44)
T ss_dssp             CCSCCCCCSS-EECTTTCCEESCHHHHHHHGGGGCCCCCTT
T ss_pred             cccccCCCCC-eECCCCCCccCCHHHHHHHHHHcCCCCCcC
Confidence            5667778776 999999999999999999999999999984

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.93  E-value=4.9e-10  Score=48.85  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=25.1

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      .+.++ |.|..|++.|...+.|.+|+++|++++|
T Consensus         3 ~~~k~-~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            3 SGSSG-YVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCS-EECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCC-eECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            44455 8888888888888888888888887764

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=9.4e-10  Score=50.57  Aligned_cols=39  Identities=15%  Similarity=0.342  Sum_probs=34.9

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .+.++++|.|..|++.|.....|..|++.|.++++ |.|+
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG-PSSG   44 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC-CCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC-CCCC
Confidence            35678899999999999999999999999999877 9884

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=5.1e-10  Score=57.65  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=51.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      ..+.+|+.|..|++.|. ...|..|+ .+.+.++ +.|+.|++.|. ...|..|++++.+++.
T Consensus        12 ~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~-~~C~~C~~~~~-~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A           12 ECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART-ELCGNCGRNVL-VKDLKTHPEVCGREGS   70 (75)
T ss_dssp             CCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE-EECSSSCCEEE-TTGGGTHHHHBTTBSS
T ss_pred             cCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc-eEcccCCCcCc-HHHHHHHHHHccCCcC
Confidence            46789999999999995 78899999 8888787 99999999877 5889999999988753

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=9.8e-10  Score=50.96  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.++++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2en3_A            3 SGSSGTGEKP-FQCKECGMNFSWSCSLFKHLRSHERTDPSG   42 (46)
T ss_dssp             CCCCSCCCCS-EECSSSCCEESSSHHHHHHHHHHHHSCCSS
T ss_pred             cccccCCCCC-eeCcccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999984

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1e-09  Score=50.43  Aligned_cols=39  Identities=15%  Similarity=0.374  Sum_probs=34.8

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG-PSSG   44 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS-SCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC-CCCC
Confidence            35678999999999999999999999999998776 8873

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.3e-10  Score=51.17  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.+.++ |.|..|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq3_A            3 SGSSGTGEKP-YECNQCGKAFSVRSSLTTHQAIHTGKKPSG   42 (46)
T ss_dssp             CCCSSCCCCS-SEETTTTEECSSHHHHHHHHTTSCCCCCCC
T ss_pred             cccCCCCCCC-eECCCCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            5667788776 999999999999999999999999999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.90  E-value=1.8e-09  Score=53.79  Aligned_cols=55  Identities=15%  Similarity=0.260  Sum_probs=47.1

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      .+.|+.|. .|.....|..|+....         ..++++|.|+.|++.|.....|..|++.+++
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~~H---------~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHYVTSH---------KRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHS---------SSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ceECCCCcchhCCHHHHHHHHHHHc---------CCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            35899999 8999999999987632         1367899999999999999999999998865

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=5.9e-10  Score=50.72  Aligned_cols=38  Identities=16%  Similarity=0.342  Sum_probs=34.1

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+.+++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP-SSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS-TTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC-CCC
Confidence            35678999999999999999999999999998776 876

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.89  E-value=4.2e-10  Score=49.77  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      |++.|.++++ |.|+.|++.|.....|.+|+++|+++
T Consensus         2 H~~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCC-ccCCCCCcccCcHHHHHHHHHHhccC
Confidence            3455666555 77777777777777777777777653

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=1.3e-09  Score=50.30  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=33.0

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .|.++++ |.|.+|++.|.....|.+|+++|+++++|.
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~   40 (45)
T 2epq_A            4 GSSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKS   40 (45)
T ss_dssp             CCSSCCS-SEETTTTEECSCHHHHHHHHHHHSCCCCCC
T ss_pred             CcCCCCC-CcCCCCCcccCCHHHHHHHHHHccCCCCCC
Confidence            3556666 999999999999999999999999999984

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.9e-10  Score=50.64  Aligned_cols=38  Identities=24%  Similarity=0.435  Sum_probs=34.2

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP-SSG   42 (42)
T ss_dssp             CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC-CCC
T ss_pred             ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            35678999999999999999999999999998776 876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.1e-09  Score=50.26  Aligned_cols=40  Identities=13%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      |++.|.++++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eox_A            3 SGSSGTDSKS-YNCNECGKAFTRIFHLTRHQKIHTRKSGPS   42 (44)
T ss_dssp             CCCCCCCCCC-EEETTTTEEESSSHHHHTTHHHHCCCCCCS
T ss_pred             CCcCCCCCCC-eECcccCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5667778776 999999999999999999999999999985

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.87  E-value=8.5e-10  Score=48.12  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=22.3

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      .+.++ |.|.+|++.|...+.|.+|+++|++++|
T Consensus         3 ~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            3 SGKRP-FVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             SCCSC-EECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCcC-eeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            34444 7777777777777777777777776654

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=2e-09  Score=54.27  Aligned_cols=39  Identities=10%  Similarity=0.100  Sum_probs=27.9

Q ss_pred             cCCCceeeccc--hhhhccCchHHHHHH-hHHhcCCCCccCCC
Q psy3491          44 PLQSALFMCES--CHKTYKAKGSLERHK-KFECGKEAGLQCPF   83 (108)
Q Consensus        44 ~~~~~~~~C~~--c~~~f~~~~~l~~h~-~~~~~~~~~~~c~~   83 (108)
                      .++++||.|..  |+++|...+.|..|+ ++|+++++ +.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP-~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP-AFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC-CCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC-ccccc
Confidence            35777888854  888888888888886 56777666 77643

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.7e-09  Score=48.07  Aligned_cols=35  Identities=11%  Similarity=0.166  Sum_probs=27.2

Q ss_pred             hcCCCCccCC--CCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          73 CGKEAGLQCP--FCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        73 ~~~~~~~~c~--~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .++++ |.|.  .|++.|...+.|.+|+++|+++++|.
T Consensus         2 ~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            2 SDDKP-FLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             TTCCC-EECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCcc-eECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            34455 8888  58888888888888888888888873

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.86  E-value=4.1e-09  Score=56.64  Aligned_cols=49  Identities=24%  Similarity=0.315  Sum_probs=43.3

Q ss_pred             hccCchHHHHHHhHHhcCCCCccCCCCcccc-CCchhHHHHHHHhcCCCCCC
Q psy3491          58 TYKAKGSLERHKKFECGKEAGLQCPFCPYKS-KHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        58 ~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f-~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .|.....|..|++.+.+.++ |.|..|++.| .....|..|+++| ++++|.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~-~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~   64 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGS-VSCPTCQAVGRKTIEGLKKHMENC-KQEMFT   64 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSC-EECTTTCSCEESSHHHHHHHHHHH-CCCCCC
T ss_pred             CCCCchHHHHHHHHhcCCCC-cCCCCCCCCcccCHHHHHHHHHHH-CCCCeE
Confidence            45667778899999888777 9999999999 9999999999999 999884

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=2.5e-09  Score=49.12  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~~   43 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG-PSS   43 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC-CCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC-CCC
Confidence            45788999999999999999999999999998776 765

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=7.6e-09  Score=53.06  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=47.4

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCC-CceeeccchhhhccCchHHHHHHhHHhcCCC
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQ-SALFMCESCHKTYKAKGSLERHKKFECGKEA   77 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~   77 (108)
                      .+.|++|. .|.....|..|+....          .+ .++|.|..|++.|.....|..|++.+++...
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h----------~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKH----------TENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHS----------SSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhc----------CCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            36899999 8999999999987432          33 4789999999999999999999998776443

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.79  E-value=3.1e-09  Score=47.49  Aligned_cols=36  Identities=14%  Similarity=0.332  Sum_probs=32.3

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhcCCCCccC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQC   81 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c   81 (108)
                      ++++||.|..|++.|.....|..|++.|.++++ |.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA-RLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCT-TTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcc-cee
Confidence            467899999999999999999999999998776 765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=6.1e-09  Score=45.51  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=23.6

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      .+.++ |.|.+|++.|.....|.+|+++|++++
T Consensus         5 ~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            5 SSGKT-HLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCSS-CBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCC-eecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            44454 888888888888888888888877764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.9e-09  Score=46.98  Aligned_cols=33  Identities=21%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             HhcCCCCccCCCCccccCCc-hhHHHHHHHhcCCC
Q psy3491          72 ECGKEAGLQCPFCPYKSKHK-SNLKTHMAIRHQNG  105 (108)
Q Consensus        72 ~~~~~~~~~c~~C~~~f~~~-~~l~~H~~~h~~~k  105 (108)
                      |.+.++ |.|..|++.|... +.|.+|+++|++++
T Consensus         4 h~~~k~-~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            4 GSSGRA-MKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCCC-EECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCC-eECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            344444 6666666666666 66666666666553

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1e-09  Score=51.29  Aligned_cols=39  Identities=13%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             HhHHhcCCCCccCC--CCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          69 KKFECGKEAGLQCP--FCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        69 ~~~~~~~~~~~~c~--~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .+.|.+.++ |.|.  .|++.|.....|.+|+++|++++||.
T Consensus         4 ~~~H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   44 (48)
T 2ent_A            4 GSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSHSGVKPSG   44 (48)
T ss_dssp             CCSSCCCCC-EECCSSSCCCEESSHHHHHHHHTTSCCCCSCS
T ss_pred             CCCcCCCCC-eECCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            345677676 9998  89999999999999999999999984

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=5.2e-09  Score=46.87  Aligned_cols=30  Identities=27%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             cCCCCccCCC--CccccCCchhHHHHHHHhcCC
Q psy3491          74 GKEAGLQCPF--CPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        74 ~~~~~~~c~~--C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      ++++ |.|.+  |++.|...+.|.+|+++|+++
T Consensus         6 gekp-~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            6 SGIL-LKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCC-EECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCC-CCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            3444 66654  666666666666666666654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=4.4e-09  Score=46.00  Aligned_cols=32  Identities=28%  Similarity=0.583  Sum_probs=20.2

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      .+.++ |.|..|++.|.....|..|+++|++++
T Consensus         5 ~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            5 SSGKP-YKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCCCS-EECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCC-CCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            34444 667667777766666767766666553

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.75  E-value=3.8e-09  Score=53.58  Aligned_cols=50  Identities=18%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             ccCC--CCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHH
Q psy3491          12 IVDP--VCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        12 ~~~~--~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      +.|+  .|. .|.....|..|++.+           .++++|.|..|++.|.....|..|++.|
T Consensus        20 ~~C~~~~C~k~f~~~~~l~~H~~~h-----------~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           20 YACPVESCDRRFSRSDELTRHIRIH-----------TGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             EECSSTTBCCEESSHHHHHHHHHHH-----------HCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             cCCcCCCCCCccCCHHHHHHHHHhh-----------CCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            5897  599 899999999998765           4678999999999999999999998876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=3.6e-09  Score=46.36  Aligned_cols=32  Identities=31%  Similarity=0.682  Sum_probs=20.5

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      .+.++ |.|.+|++.|.....|.+|+++|++++
T Consensus         5 ~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            5 SSGKP-FKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CCCCS-EECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCC-ccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            34444 777777777777777777776666553

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=2.7e-09  Score=49.96  Aligned_cols=35  Identities=11%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .+.++ |.|.+|++.|.....|.+|+++|++++||.
T Consensus         8 ~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (48)
T 2epr_A            8 RTRKQ-VACEICGKIFRDVYHLNRHKLSHSGEKPYS   42 (48)
T ss_dssp             CCCCS-EEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             CCCcC-eeCCCCCcccCCHHHHHHHHHhcCCCCCcc
Confidence            44455 999999999999999999999999999985

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=7.6e-09  Score=45.28  Aligned_cols=31  Identities=23%  Similarity=0.516  Sum_probs=20.0

Q ss_pred             cCCCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          74 GKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        74 ~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      +.++ |.|..|++.|.....|..|+++|++++
T Consensus         6 ~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            6 SGKI-FTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCCC-EECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCC-EECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            3344 677777777777777777777666653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=2.7e-10  Score=60.44  Aligned_cols=56  Identities=13%  Similarity=0.242  Sum_probs=45.0

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      .+++++||.|..|++.|.....|..|++.|.++++ |.|..|.    ....|..|.++|.+
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ-KRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH-HHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC-cccchhh----hHHHHHhhhccccc
Confidence            45688999999999999999999999999998776 9998764    34445556666655

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.73  E-value=1.4e-08  Score=42.23  Aligned_cols=29  Identities=38%  Similarity=0.794  Sum_probs=24.8

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      +|.|..|++.|...+.|..|+++|+++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            38899999999999999999998888764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.6e-08  Score=51.90  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=46.3

Q ss_pred             cCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          10 VNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        10 ~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ..+.|++|. .|.....|..|++.+..        ..++++|.|..|++.|.....|..|++.++.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~--------~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRKHAE--------TVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHH--------HTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHHhhc--------cCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            346899999 89999999999887621        1136799999999999999999999965444

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.72  E-value=3.3e-09  Score=50.91  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCc
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGL   79 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~   79 (108)
                      ++++++|.|..|++.|.....|..|++.|.++++ |
T Consensus        19 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~   53 (54)
T 1yui_A           19 SQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP-G   53 (54)
T ss_dssp             HTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC-C
T ss_pred             cCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC-C
Confidence            4678899999999999999999999999998765 5

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=7.9e-09  Score=52.09  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=31.1

Q ss_pred             HhcCCCCccCCC--CccccCCchhHHHHH-HHhcCCCCCC
Q psy3491          72 ECGKEAGLQCPF--CPYKSKHKSNLKTHM-AIRHQNGLHV  108 (108)
Q Consensus        72 ~~~~~~~~~c~~--C~~~f~~~~~l~~H~-~~h~~~k~~~  108 (108)
                      ..++++ |.|..  |++.|...++|.+|+ ++|+++|||.
T Consensus        22 ~sGEKP-YkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~   60 (73)
T 1x3c_A           22 YSPYRP-YRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   60 (73)
T ss_dssp             SCSSCS-CBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             ccCCCC-eECCCCCcChhHcCHHHHHHHhhhhCCCCCCcc
Confidence            356676 99965  999999999999997 6899999984

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=9.6e-09  Score=45.18  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      .+++++||.|..|++.|.....|..|++.|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            3567899999999999999999999999998754

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.72  E-value=3.5e-09  Score=59.45  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             CCceeeccchhhhcc------CchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          46 QSALFMCESCHKTYK------AKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~------~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      +++.+.|..|++.|.      ....|..|+ .|.+.++ |.|.+|++.|.....|..|+++|  ++||.
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~-~~C~~C~k~f~~~~~l~~H~~~H--~~~~~  102 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ-FVCPLCLMPFSSSVSLKQHIRYT--EHTKV  102 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS-EECTTTCCEESSHHHHHHHHHHT--CCCCB
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC-eECCCCCcccCCHhHHHHHHHHC--CCCCC
Confidence            345688888887776      455666666 5777676 99999999999999999999998  77763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.72  E-value=2.4e-10  Score=49.15  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=26.8

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ||.|.+|++.|...+.|.+|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            488999999999999999999999999887

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.6e-08  Score=50.35  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             cCccCccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeecc-chhhhccCchHHHHHHhHHhcCC
Q psy3491           7 YRTVNIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCE-SCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus         7 ~~~~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      -+...+.|+.|. .|. ...|..|+++            .+++||.|. .|++.|.....|..|++.|....
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~------------~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ------------CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH------------CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH------------cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            344456899999 788 8999999864            256799999 99999999999999999887644

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.70  E-value=1.7e-08  Score=41.71  Aligned_cols=28  Identities=18%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ||.|..|++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            3888888888888888888888888764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=5.9e-09  Score=45.65  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=18.5

Q ss_pred             cCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          74 GKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        74 ~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      +.++ |.|.+|++.|...+.|.+|+++|+++
T Consensus         6 ~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            6 SGLL-YDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCCC-EECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCC-eECCCCCCccCCHHHHHHHHHHhcCC
Confidence            3344 66666666666666666666666554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.68  E-value=1.9e-08  Score=41.48  Aligned_cols=28  Identities=36%  Similarity=0.698  Sum_probs=23.5

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ||.|..|++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            3888888888888888888888888764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.68  E-value=1.3e-08  Score=44.09  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +.++++|.|..|++.|.....|..|++.|.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            357789999999999999999999999988754

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.68  E-value=1.5e-08  Score=43.95  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=29.5

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +++++||.|..|++.|.....|..|++.|.+.+
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            457889999999999999999999999988754

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.67  E-value=1.3e-08  Score=43.76  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCCCCcc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKEAGLQ   80 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~   80 (108)
                      +||.|..|++.|.....|..|+++|.++++ |.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGE-ER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCC-CC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCC-CC
Confidence            479999999999999999999999998776 64

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.65  E-value=1.4e-08  Score=42.07  Aligned_cols=27  Identities=22%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|..|++.|.....|..|+++|++++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            777777777777777777777777654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.9e-10  Score=58.33  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=34.1

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCC
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFC   84 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C   84 (108)
                      +++|.|..|++.|.....|..|++.|.++++ |.|++|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~-~~C~~C   73 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKT-SGPSSG   73 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC-SSCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC-CCCCCC
Confidence            5689999999999999999999999998877 999987

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=5.1e-09  Score=46.28  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=12.7

Q ss_pred             ccCCCCccccCCchhHHHH-HHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTH-MAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H-~~~h~~  103 (108)
                      |.|..|++.|...+.|.+| +++|++
T Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A           10 YYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             EECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHHccC
Confidence            5555555555555555555 444443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.64  E-value=1e-08  Score=48.05  Aligned_cols=31  Identities=23%  Similarity=0.443  Sum_probs=18.6

Q ss_pred             CCCceeeccchhhhccCchHHHHHHh-HHhcC
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKK-FECGK   75 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~-~~~~~   75 (108)
                      ++++||.|..|++.|.....|..|++ .|.++
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            45566666666666666666666666 55543

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.63  E-value=2e-08  Score=41.48  Aligned_cols=27  Identities=30%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|..|++.|.....|..|+++|++++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             ccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            778888888888888888888777764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.62  E-value=2.3e-08  Score=41.53  Aligned_cols=27  Identities=15%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|..|++.|.....|..|+++|++++
T Consensus         4 ~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            4 YQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             EECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             ccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            788888888888888888888777654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.62  E-value=2.4e-08  Score=44.00  Aligned_cols=27  Identities=19%  Similarity=0.343  Sum_probs=17.1

Q ss_pred             ccCCC--CccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPF--CPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~--C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|.+  |++.|...+.|.+|+++|++++
T Consensus         9 ~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            9 HICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            66653  6666666666666666666553

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.61  E-value=1.6e-08  Score=41.17  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      ||.|..|++.|.....|.+|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            478888888888888888888887763

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.1e-08  Score=44.30  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             cCCCceeeccc--hhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCES--CHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      ..+++||.|..  |++.|...+.|..|+++|++.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46789999986  999999999999999999863

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.61  E-value=4.2e-08  Score=49.53  Aligned_cols=51  Identities=16%  Similarity=0.370  Sum_probs=43.5

Q ss_pred             CccCCC--CC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccc--hhhhccCchHHHHHHhHH
Q psy3491          11 NIVDPV--CP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCES--CHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        11 ~~~~~~--c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~   72 (108)
                      .+.|+.  |. .|.....|..|++.+           .++++|.|..  |++.|.....|..|++.|
T Consensus        17 ~~~C~~~~C~k~f~~~~~L~~H~~~H-----------~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           17 SHICSHPGCGKTYFKSSHLKAHTRTH-----------TGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CEECSSTTTCCEESSHHHHHHHHHHH-----------SSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ceeCCCCCCccccCCHHHHHHHHHhc-----------CCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            358988  99 899999999998866           5678999965  999999999999998754

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=2.5e-08  Score=47.77  Aligned_cols=36  Identities=14%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             HhcCCCCccCCCCccccCCchhHHHHHH-HhcCCCCCC
Q psy3491          72 ECGKEAGLQCPFCPYKSKHKSNLKTHMA-IRHQNGLHV  108 (108)
Q Consensus        72 ~~~~~~~~~c~~C~~~f~~~~~l~~H~~-~h~~~k~~~  108 (108)
                      +.+.++ |.|.+|++.|.....|.+|++ +|+++++|.
T Consensus         7 ~~~~k~-~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~   43 (54)
T 2eps_A            7 GSVGKP-YICQSCGKGFSRPDHLNGHIKQVHTSERPHK   43 (54)
T ss_dssp             CCSSCC-EECSSSCCEESSHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCC-eECCCCCcccCCHHHHHHHHHHhcCCCCCcc
Confidence            345565 999999999999999999997 899999984

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=4.3e-08  Score=42.66  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +.+++||.|..|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            46788999999999999999999999998764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.58  E-value=3e-08  Score=41.80  Aligned_cols=28  Identities=14%  Similarity=0.403  Sum_probs=23.1

Q ss_pred             CccCC--CCccccCCchhHHHHHHHhcCCC
Q psy3491          78 GLQCP--FCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        78 ~~~c~--~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ||.|.  .|++.|...+.|..|+++|++++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            38887  88888888888888888888764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=5.8e-08  Score=42.59  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=29.2

Q ss_pred             ccCCCceeeccchhhhccCc-hHHHHHHhHHhcC
Q psy3491          43 KPLQSALFMCESCHKTYKAK-GSLERHKKFECGK   75 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~-~~l~~h~~~~~~~   75 (108)
                      .+.+++||.|..|++.|... ..|..|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            35678899999999999999 9999999998864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.58  E-value=1.7e-08  Score=44.61  Aligned_cols=25  Identities=36%  Similarity=0.762  Sum_probs=20.7

Q ss_pred             CCCceeeccchhhhccCchHHHHHH
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHK   69 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~   69 (108)
                      .+++||.|+.|++.|...+.|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            5678888888888888888888887

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=6.8e-09  Score=43.13  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|..|++.|...+.|..|+++|++++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            777778888887777888877777653

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.56  E-value=6.6e-08  Score=42.65  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             CCCceeecc--chhhhccCchHHHHHHhHHhcCCCCc
Q psy3491          45 LQSALFMCE--SCHKTYKAKGSLERHKKFECGKEAGL   79 (108)
Q Consensus        45 ~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~~~~   79 (108)
                      ++++||.|.  .|++.|.....|..|++.|.++++ |
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK-F   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT-T
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC-C
Confidence            467899999  599999999999999999998765 5

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=7.6e-08  Score=48.22  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=30.9

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCc
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCP   85 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~   85 (108)
                      ..+++||.|..|++.|.....|..|+++|++..  ..+.++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~--~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS--LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS--CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc--ccccccc
Confidence            456789999999999999999999999988743  4444443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.55  E-value=6.8e-08  Score=40.91  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             ccCC--CCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCP--FCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~--~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|.  .|++.|...+.|..|+++|++++
T Consensus         4 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            4 YSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            8887  78888888888888888887764

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.55  E-value=4.7e-08  Score=42.84  Aligned_cols=32  Identities=19%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      .+++++||.|+.|++.|.....|..|++.|.+
T Consensus         5 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             cCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            35678999999999999999999999998865

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=4.6e-08  Score=42.66  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=28.7

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +.+++||.|..|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            46788999999999999999999999988763

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.54  E-value=6.2e-09  Score=48.54  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             hHHhcCCCCccCC--CCccccCCchhHHHHHHHhcCCC
Q psy3491          70 KFECGKEAGLQCP--FCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        70 ~~~~~~~~~~~c~--~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ..|.++++ |.|.  .|++.|...+.|.+|+++|++++
T Consensus        11 ~~H~~~k~-~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           11 VKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CEEETTTE-EECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCC-eECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            34555554 7774  57777777777777777776654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=6.2e-08  Score=42.13  Aligned_cols=32  Identities=28%  Similarity=0.623  Sum_probs=28.8

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +.++++|.|..|++.|.....|..|++.|.++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            46778999999999999999999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4.5e-08  Score=42.68  Aligned_cols=32  Identities=22%  Similarity=0.432  Sum_probs=28.5

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +.+++||.|..|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            46788999999999999999999999988763

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=7.6e-08  Score=41.93  Aligned_cols=32  Identities=31%  Similarity=0.615  Sum_probs=28.5

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +.+++||.|..|++.|.....|..|++.|.++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            35678999999999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=6.2e-08  Score=42.63  Aligned_cols=32  Identities=25%  Similarity=0.491  Sum_probs=28.4

Q ss_pred             ccCCCceeeccchhhhccCchHHHHH-HhHHhc
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERH-KKFECG   74 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h-~~~~~~   74 (108)
                      .+++++||.|..|++.|.....|..| ++.|.+
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            35678999999999999999999999 888765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.90  E-value=1.4e-08  Score=42.38  Aligned_cols=27  Identities=19%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|..|++.|.....|..|+++|++++
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            4 YVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            777777777777777777777777653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.47  E-value=9.5e-08  Score=38.85  Aligned_cols=23  Identities=26%  Similarity=0.743  Sum_probs=16.8

Q ss_pred             ccCCCCccccCCchhHHHHHHHh
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      |.|..|++.|...+.|..|+++|
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            4 FSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHC
T ss_pred             ccCCCcChhhCCHHHHHHHHHHc
Confidence            77777777777777777777665

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.45  E-value=7.1e-08  Score=40.11  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             CccCCCCccccCCchhHHHH-HHHhcCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTH-MAIRHQNG  105 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H-~~~h~~~k  105 (108)
                      ||.|..|++.|...+.|..| +++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            37888888888888888888 57777653

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.45  E-value=1.6e-07  Score=41.20  Aligned_cols=32  Identities=25%  Similarity=0.616  Sum_probs=28.6

Q ss_pred             cCCCceeecc--chhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCE--SCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +++++||.|.  .|++.|...+.|..|++.|.++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4678899998  5999999999999999999874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.44  E-value=6.6e-08  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=28.0

Q ss_pred             HhcCCCCccCCCCccccCCchhHHHHHH-HhcCCC
Q psy3491          72 ECGKEAGLQCPFCPYKSKHKSNLKTHMA-IRHQNG  105 (108)
Q Consensus        72 ~~~~~~~~~c~~C~~~f~~~~~l~~H~~-~h~~~k  105 (108)
                      |.++++ |.|.+|++.|.....|.+|++ +|.++.
T Consensus         2 Ht~~kp-~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKP-YACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSC-EECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcC-EECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            556676 999999999999999999999 888865

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.43  E-value=7.8e-08  Score=39.39  Aligned_cols=24  Identities=21%  Similarity=0.513  Sum_probs=17.0

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|..|++.|.....|..|+++|+
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            4 YSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             EECSSSCCEESCHHHHHHHHTTSC
T ss_pred             ccCCCCCcccCCHHHHHHHHHhcC
Confidence            677777777777777777776654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.43  E-value=1.3e-07  Score=38.93  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=25.5

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|..|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999998764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.41  E-value=1e-08  Score=54.29  Aligned_cols=38  Identities=18%  Similarity=0.340  Sum_probs=33.2

Q ss_pred             HhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          69 KKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        69 ~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .+.|.+.++ |.|.+|++.|.....|..|+++|++++||
T Consensus        17 ~~~H~~~kp-y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~   54 (88)
T 1x6f_A           17 NGPRLQNST-YQCKHCDSKLQSTAELTSHLNIHNEEFQK   54 (88)
T ss_dssp             CCSCCCCSC-EECSSSCCEESSHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCC-CcCCCCCCEeCCHHHHHHHHHHhCCCCCc
Confidence            345677676 99999999999999999999999998775

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.40  E-value=2.6e-07  Score=46.26  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=29.0

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      ..+++ |.|.+|++.|.....|.+|+++|+++..
T Consensus         9 ~~ekp-y~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            9 REAGI-LPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCC-CCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCccC-cCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            44555 9999999999999999999999998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=1.5e-07  Score=38.93  Aligned_cols=29  Identities=17%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      ++||.|..|++.|.....|..|++.|.++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            36899999999999999999999988763

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=7.9e-08  Score=39.21  Aligned_cols=23  Identities=22%  Similarity=0.577  Sum_probs=15.1

Q ss_pred             ccCCCCccccCCchhHHHHHHHh
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      |.|..|++.|...+.|.+|+++|
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            4 YRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             EEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCCCCCCcccCCHHHHHHHHHhc
Confidence            66666666666666666666554

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.37  E-value=2.1e-07  Score=38.25  Aligned_cols=28  Identities=25%  Similarity=0.647  Sum_probs=25.2

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|..|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999998763

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=2.6e-07  Score=37.89  Aligned_cols=28  Identities=29%  Similarity=0.755  Sum_probs=25.5

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|..|++.|.....|..|++.|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4799999999999999999999998864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.37  E-value=1.5e-07  Score=38.24  Aligned_cols=26  Identities=15%  Similarity=0.428  Sum_probs=23.6

Q ss_pred             CceeeccchhhhccCchHHHHHHhHH
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      ++||.|..||+.|.....|..|++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            36899999999999999999999876

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=2.2e-07  Score=38.04  Aligned_cols=28  Identities=25%  Similarity=0.546  Sum_probs=25.5

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|..|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4799999999999999999999998874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.37  E-value=2.4e-07  Score=38.25  Aligned_cols=29  Identities=24%  Similarity=0.437  Sum_probs=25.9

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +||.|..|++.|.....|..|++.|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47999999999999999999999988754

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.33  E-value=1.5e-07  Score=38.52  Aligned_cols=27  Identities=22%  Similarity=0.519  Sum_probs=24.1

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHh
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      ++||.|..|++.|.....|..|++.|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            368999999999999999999998765

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.66  E-value=7e-08  Score=38.91  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=15.6

Q ss_pred             ccCCCCccccCCchhHHHHHHHh
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      |.|..|++.|...+.|..|+++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            66666777776666666666655

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.31  E-value=1.4e-07  Score=38.45  Aligned_cols=26  Identities=19%  Similarity=0.400  Sum_probs=23.3

Q ss_pred             CceeeccchhhhccCchHHHHHHhHH
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      ++||.|..|++.|.....|..|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            36899999999999999999998765

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.29  E-value=4.2e-07  Score=38.32  Aligned_cols=29  Identities=31%  Similarity=0.579  Sum_probs=25.9

Q ss_pred             Cceeecc--chhhhccCchHHHHHHhHHhcC
Q psy3491          47 SALFMCE--SCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        47 ~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      ++||.|.  .|++.|.....|..|++.|.++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3689999  8999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.62  E-value=9.2e-08  Score=39.49  Aligned_cols=28  Identities=25%  Similarity=0.449  Sum_probs=25.0

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|..|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4799999999999999999999988763

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.28  E-value=5.5e-07  Score=41.70  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=28.6

Q ss_pred             cCCCceeecc--chhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCE--SCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +.+++||.|.  .|++.|...+.|..|++.|.++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            5688999996  7999999999999999999874

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=1.1e-07  Score=39.50  Aligned_cols=28  Identities=25%  Similarity=0.781  Sum_probs=25.3

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|..|++.|.....|..|++.|.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            6899999999999999999999988763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.24  E-value=1.6e-08  Score=43.21  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=26.9

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCCC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKEA   77 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~   77 (108)
                      +||.|..|++.|...+.|..|++.|.++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            479999999999999999999999988665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.23  E-value=1e-08  Score=50.61  Aligned_cols=38  Identities=11%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             HHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCCC
Q psy3491          67 RHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLHV  108 (108)
Q Consensus        67 ~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~~  108 (108)
                      .|++.|.++++ |.|+.|++.|.....|.   ++|+++++|.
T Consensus         4 ~h~~~H~~~k~-~~C~~C~k~F~~~~~l~---~~H~~~k~~~   41 (62)
T 1vd4_A            4 TDERDSTNRAS-FKCPVCSSTFTDLEANQ---LFDPMTGTFR   41 (62)
T ss_dssp             CCSSSCCSSSE-EECSSSCCEEEHHHHHH---HEETTTTEEB
T ss_pred             hHHHHcCCCCC-ccCCCCCchhccHHHhH---hhcCCCCCEE
Confidence            46777888776 99999999999988886   7899998873

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.22  E-value=4.1e-07  Score=38.11  Aligned_cols=28  Identities=36%  Similarity=0.759  Sum_probs=25.0

Q ss_pred             ceeecc--chhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCE--SCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~--~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|.  .|++.|.....|..|++.|.++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            478998  9999999999999999998764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=37.82  Aligned_cols=25  Identities=24%  Similarity=0.628  Sum_probs=22.8

Q ss_pred             ceeeccchhhhccCchHHHHHHhHH
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      +||.|..||+.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4799999999999999999998876

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.20  E-value=6.4e-07  Score=39.43  Aligned_cols=26  Identities=23%  Similarity=0.306  Sum_probs=22.9

Q ss_pred             hcCCCCccCCCCccccCCchhHHHHHH
Q psy3491          73 CGKEAGLQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        73 ~~~~~~~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      .++++ |.|.+|++.|.+.++|.+|+.
T Consensus         4 ~gekp-~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            4 LKPAR-FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSCCC-CEETTTTEECSCHHHHHHHHH
T ss_pred             CCccC-eECCCCCCccCCHhHccCcCC
Confidence            45566 999999999999999999984

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.20  E-value=5.1e-07  Score=36.97  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=16.5

Q ss_pred             ccCC--CCccccCCchhHHHHHHHhc
Q psy3491          79 LQCP--FCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~--~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|.  .|++.|...+.|..|+++|+
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            6666  67777777777777766664

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.18  E-value=5.1e-07  Score=36.41  Aligned_cols=26  Identities=23%  Similarity=0.683  Sum_probs=22.8

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            58899999999999999999988764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.14  E-value=6.3e-07  Score=37.03  Aligned_cols=28  Identities=25%  Similarity=0.694  Sum_probs=24.0

Q ss_pred             ceeeccchhhhccCchHHHHH-HhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERH-KKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h-~~~~~~~   75 (108)
                      +||.|..|++.|.....|..| ++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            479999999999999999999 6777653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.04  E-value=1.9e-06  Score=35.14  Aligned_cols=27  Identities=30%  Similarity=0.886  Sum_probs=23.9

Q ss_pred             ceeecc--chhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCE--SCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~--~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ++|.|.  .|++.|.....|..|++.|.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            478999  999999999999999988753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.75  E-value=4.1e-05  Score=37.89  Aligned_cols=50  Identities=18%  Similarity=0.410  Sum_probs=40.6

Q ss_pred             cchhhhccCchHHHHHHh-HHhcCC-----CCccCC--CCccccCCchhHHHHHHHhc
Q psy3491          53 ESCHKTYKAKGSLERHKK-FECGKE-----AGLQCP--FCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        53 ~~c~~~f~~~~~l~~h~~-~~~~~~-----~~~~c~--~C~~~f~~~~~l~~H~~~h~  102 (108)
                      ..|++.|.+...|..|+. .|.+.+     .+|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            459999999999999984 666544     149995  89999888899999998764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.39  E-value=3.7e-06  Score=42.93  Aligned_cols=41  Identities=20%  Similarity=0.249  Sum_probs=34.2

Q ss_pred             HHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          64 SLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        64 ~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      .|..|+..+.+.++ +.|..|++.|. ...|..|+ .+.++++|
T Consensus         4 ~L~~H~~~~c~~r~-~~C~~C~~~~~-~~~L~~H~-~~c~~~~~   44 (75)
T 2d9k_A            4 GSSGHEETECPLRL-AVCQHCDLELS-ILKLKEHE-DYCGARTE   44 (75)
T ss_dssp             CCSCCCCCCCCCCC-EECSSSCCEEC-HHHHHHHH-HHHHHCEE
T ss_pred             HHHhhCcccCCCcc-cCCcccChHhh-HHHHHHHH-hHcCCCce
Confidence            45677778888787 99999999994 88999999 88887764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.83  E-value=0.00025  Score=39.53  Aligned_cols=30  Identities=17%  Similarity=0.342  Sum_probs=25.3

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHH
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      .++|.++|.|..|++.|.....|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            456888999999999999999999997643

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.63  E-value=0.00035  Score=38.97  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=24.4

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHH
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAI  100 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~  100 (108)
                      -+.|..+ |.|..|++.|.+...|..|.++
T Consensus        44 d~tGekp-fyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGL-HRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGC-SEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcc-eEcccCcchhCCHHHHHHHHhh
Confidence            3456566 9999999999999999999763

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.85  E-value=0.011  Score=33.06  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      |.|.+|.+.|.+...+..|..
T Consensus        94 ~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           94 KCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TEETTTTEECSSHHHHHHHHT
T ss_pred             eEcCCCCCEeCCHHHHHHHHC
Confidence            889999999999999998874

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.66  E-value=0.0092  Score=27.35  Aligned_cols=28  Identities=18%  Similarity=0.564  Sum_probs=22.0

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      .++.|+.|+..|.....|..|+....++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            4688888888888888888888865553

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.66  E-value=0.01  Score=27.17  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             ccCCCCccccCCchhHHHHHHHh
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      +.|+-|+..|+....|++|++.-
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhhhc
Confidence            99999999999999999999853

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.14  E-value=0.012  Score=34.35  Aligned_cols=57  Identities=19%  Similarity=0.362  Sum_probs=41.2

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ++..|+.|+..+ ....|..|....-..+. ..|+.|+..+.. ..+..|..++.|+.++
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~-~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQ-VSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCE-EECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCC-eECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            466888998777 44568889877666666 889999887654 5689999988887654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=94.02  E-value=0.12  Score=25.17  Aligned_cols=53  Identities=17%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             CCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeecc--chhhhccCchHHHHHHhHH
Q psy3491          16 VCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCE--SCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        16 ~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~   72 (108)
                      -|. .|.....|..|+...+.+...    .....+|.|.  .|+..+.....|..|++..
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~----~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDF----KHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCC----CCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCccc----CCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            366 788888898887433221110    0122379996  7999888888999998864

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.62  E-value=0.03  Score=29.15  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=13.3

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ..|.+||+.|.   .|.+|+..+||..
T Consensus        22 iiClecGK~fK---~LkRHL~~~hglt   45 (87)
T 2jsp_A           22 IVCLECGGSFK---SLKRHLTTHHSMT   45 (87)
T ss_dssp             EECTBTCCEES---BHHHHHHHTTCSC
T ss_pred             eEecccchhhH---HHHHHHHHccCCC
Confidence            45566666555   2456666655543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.03  E-value=0.097  Score=22.28  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=14.8

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|+.|-+.|.+...|..|-...|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcc
Confidence            566666666666666666655444

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=92.84  E-value=0.038  Score=28.18  Aligned_cols=22  Identities=14%  Similarity=-0.074  Sum_probs=10.1

Q ss_pred             CccCccCCCCCCCcChhHHHHH
Q psy3491           8 RTVNIVDPVCPAFVDAPWLYFL   29 (108)
Q Consensus         8 ~~~~~~~~~c~~~~~~~~~~~~   29 (108)
                      +.+.|.|..|..-..+..+..|
T Consensus         7 ~MV~F~C~~Cgd~lKK~kv~~H   28 (79)
T 1wjv_A            7 GMVFFTCNACGESVKKIQVEKH   28 (79)
T ss_dssp             CCCEEEESSSCCEEETTHHHHH
T ss_pred             ceeEEEcCCCCCeeecccchhH
Confidence            3444455555544444444444

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=91.78  E-value=0.023  Score=31.72  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=39.0

Q ss_pred             ccCCCCC-CCcChhHHHHHhhh--c-------C--C-------CCCcc----ccccCCCceeeccchhhhccCchHHHHH
Q psy3491          12 IVDPVCP-AFVDAPWLYFLLYS--F-------S--S-------GASFS----SFKPLQSALFMCESCHKTYKAKGSLERH   68 (108)
Q Consensus        12 ~~~~~c~-~~~~~~~~~~~~~~--~-------~--~-------~~~~~----~~~~~~~~~~~C~~c~~~f~~~~~l~~h   68 (108)
                      +.|.+|. .|.+...+..|...  +       .  .       ...+.    .....+...+-|..|+..|.....+..|
T Consensus        33 ~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~H  112 (127)
T 1zu1_A           33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESH  112 (127)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHHH
T ss_pred             CcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHHH
Confidence            5899999 89888888776521  0       0  0       00000    0112345578999999999999999888


Q ss_pred             Hh
Q psy3491          69 KK   70 (108)
Q Consensus        69 ~~   70 (108)
                      ..
T Consensus       113 ~~  114 (127)
T 1zu1_A          113 YI  114 (127)
T ss_dssp             HT
T ss_pred             HC
Confidence            65

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.04  E-value=0.23  Score=21.32  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=13.1

Q ss_pred             eeeccchhhhccCchHHHHHHhH
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKF   71 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~   71 (108)
                      .+.|..|.-.|.....+..|++.
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhee
Confidence            45566666666655555555543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=88.36  E-value=0.44  Score=22.37  Aligned_cols=20  Identities=20%  Similarity=0.632  Sum_probs=12.1

Q ss_pred             ccCCCCccccCCchhHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHM   98 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~   98 (108)
                      -.|..|+..|..+.+++.|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            45666666666666665554

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.45  E-value=0.4  Score=24.27  Aligned_cols=26  Identities=19%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             ccCCCCccccC-------CchhHHHHHHHhcCC
Q psy3491          79 LQCPFCPYKSK-------HKSNLKTHMAIRHQN  104 (108)
Q Consensus        79 ~~c~~C~~~f~-------~~~~l~~H~~~h~~~  104 (108)
                      -.|..|++.+.       ..+.|.+|++..|.+
T Consensus        29 A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           29 ATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             EEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             EECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            67778877765       356788998877653

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=86.05  E-value=0.52  Score=20.63  Aligned_cols=26  Identities=15%  Similarity=0.358  Sum_probs=19.5

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ..+.|+.||..+.. ..+..|.-.|..
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D~H~A   33 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMDYHFA   33 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhhHHHH
Confidence            46889999988887 456778777653

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=84.40  E-value=0.33  Score=22.11  Aligned_cols=35  Identities=20%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPY   86 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~   86 (108)
                      .|.|..||..+.....-.  .....--.. +.|++|+.
T Consensus         4 ~y~C~vCGyvyd~~~Gd~--t~f~~lP~d-w~CP~Cg~   38 (46)
T 6rxn_A            4 KYVCNVCGYEYDPAEHDN--VPFDQLPDD-WCCPVCGV   38 (46)
T ss_dssp             CEEETTTCCEECGGGGTT--CCGGGSCTT-CBCTTTCC
T ss_pred             EEECCCCCeEEeCCcCCC--cchhhCCCC-CcCcCCCC
Confidence            589999998886431100  111111123 78999984

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=84.10  E-value=0.12  Score=26.47  Aligned_cols=11  Identities=27%  Similarity=0.794  Sum_probs=9.0

Q ss_pred             ccCCCCccccC
Q psy3491          79 LQCPFCPYKSK   89 (108)
Q Consensus        79 ~~c~~C~~~f~   89 (108)
                      |+|+.||..|-
T Consensus        52 FkCP~CgEEFy   62 (95)
T 2k5c_A           52 FKCPVCGEEFY   62 (95)
T ss_dssp             EECTTTCCEEE
T ss_pred             hcCCCccHHHh
Confidence            88999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d1klra_	30	g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 96	0.002

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.001
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 50  FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
           + C+ C K++  K   +RH     G      C  C  K K K +L  HM I
Sbjct: 4   YPCQ-CGKSFTHKSQRDRHMSMHLGLRPY-GCGVCGKKFKMKHHLVGHMKI 52

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (70), Expect = 0.002
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 80  QCPFCPYKSKHKSNLKTHMAIRHQN 104
           QC +C ++S   SNLKTH+  +H  
Sbjct: 4   QCQYCEFRSADSSNLKTHIKTKHSK 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.73
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.37
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.29
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.28
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.23
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.21
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.18
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.15
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.13
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.12
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.12
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.11
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.11
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.1
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.09
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.05
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.04
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.04
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.03
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.02
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.0
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.0
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.96
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.94
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.83
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.76
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.74
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.7
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.66
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.6
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.58
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.53
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.47
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.36
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.32
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.3
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.25
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.08
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.9
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.85
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.83
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.81
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.81
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.75
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.74
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.71
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.66
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.6
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.59
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.56
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.5
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.46
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.45
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.36
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.32
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.3
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.26
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.21
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.14
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.13
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.12
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.09
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.09
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.02
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.98
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.92
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.9
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.84
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.75
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.75
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.73
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.7
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.48
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.06
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.02
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.99
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.69
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.64
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.62
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.6
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.37
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.43
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.39
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.1
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.94
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.83
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.76
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.64
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.32
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.08
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.97
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.72
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	88.22
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.78
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	87.05
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	83.25
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	83.09
d1fu9a_	36	U-shaped transcription factor, different fingers {	82.88

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-18  Score=83.40  Aligned_cols=53  Identities=32%  Similarity=0.605  Sum_probs=50.1

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccccCCchhHHHHHHHh
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      ++||.| .||+.|.....|..|+++|.++++ |.|.+|++.|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekp-y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccC-CcCCCcCCEecCHHHHHHHHhcC
Confidence            579999 599999999999999999999887 99999999999999999999876

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3e-14  Score=63.05  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=30.8

Q ss_pred             HHHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          67 RHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        67 ~h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      +|++.|.++++ |.|++||+.|...++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekp-y~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCS-SBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCC-EecCCCCceeeCHHHHHHhCccCCCC
Confidence            35677888776 99999999999999999999888886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-13  Score=57.36  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=23.4

Q ss_pred             HhcCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          72 ECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        72 ~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      |+++++ |.|.+||+.|...+.|.+|+++|+||
T Consensus         2 HTgekp-y~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKP-YGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCC-EECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCC-eeCCCCCCEeCchHHhHhhccccCCC
Confidence            556665 77777777777777777777777765

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.29  E-value=8.4e-13  Score=54.67  Aligned_cols=28  Identities=18%  Similarity=0.393  Sum_probs=25.5

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ||.|.+|++.|...+.|.+|+++|+|||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCCC
Confidence            4999999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=53.91  Aligned_cols=28  Identities=21%  Similarity=0.568  Sum_probs=25.2

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ||.|.+|++.|...+.|.+|+++|+++|
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCcC
Confidence            4999999999999999999999999886

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=57.48  Aligned_cols=29  Identities=17%  Similarity=0.361  Sum_probs=14.6

Q ss_pred             ccCCCCccccCCchhHHHHHH-HhcCCCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA-IRHQNGLH  107 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~-~h~~~k~~  107 (108)
                      |.|.+||+.|...++|++|++ +|++++||
T Consensus         6 y~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy   35 (39)
T d2epsa1           6 YICQSCGKGFSRPDHLNGHIKQVHTSERPH   35 (39)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSCCCCCC
T ss_pred             ccCCCCCCCcCChHHhhccCcCccCCCcCc
Confidence            555555555555555555543 35555554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.9e-12  Score=56.35  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      +|++++| |.|.+|++.|...+.|.+|+++|+++
T Consensus         2 ~HTgekP-y~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCC-EECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCC-EECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4555555 66666666666666666666666654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.6e-12  Score=56.67  Aligned_cols=37  Identities=22%  Similarity=0.538  Sum_probs=33.0

Q ss_pred             CCceeeccchhhhccCchHHHHHHh-HHhcCCCCccCCC
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKK-FECGKEAGLQCPF   83 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~-~~~~~~~~~~c~~   83 (108)
                      .++||.|..||+.|...+.|..|++ .|+++++ |.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp-y~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcC-cCCcC
Confidence            3689999999999999999999976 6999887 99974

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.7e-12  Score=54.14  Aligned_cols=32  Identities=19%  Similarity=0.454  Sum_probs=30.0

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      ++|++||.|..||++|...+.|..|+++|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            58999999999999999999999999999873

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=6.3e-12  Score=51.42  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |.|.+|++.|...++|.+|+++|+|
T Consensus         4 y~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           4 FQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             ccCCCCcCEecccccccccCCCccC
Confidence            7777777777777777777777765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.4e-12  Score=56.38  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=23.4

Q ss_pred             HHhHHhcCCCCccCCCCccccCCchhHHHHHHHhcC
Q psy3491          68 HKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        68 h~~~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |.+.|++++| |.|.+|++.|...++|.+|+++|.+
T Consensus         2 h~R~HTgeKP-y~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccC-eEeCCCCCEecCHHHHHHHHhcCcC
Confidence            4456666665 7777777777777777777766653

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-11  Score=58.19  Aligned_cols=50  Identities=22%  Similarity=0.257  Sum_probs=45.0

Q ss_pred             CccCCCCC-CCcChhHHHHHhhhcCCCCCccccccCCCceeeccchhhhccCchHHHHHHhHH
Q psy3491          11 NIVDPVCP-AFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        11 ~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      .+.|. |. +|.....|..|++++           +|++||.|..||+.|...+.|..|+++|
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~~H-----------t~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMSMH-----------LGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHHHH-----------SCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCCC-CCCeECCHHHhHHHhhcc-----------ccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            45784 99 999999999999877           7889999999999999999999999865

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-11  Score=49.53  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=19.2

Q ss_pred             CccCCCCccccCCchhHHHHHHHhc
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      ||+|.+||+.|...+.|.+|+++|+
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCCC
Confidence            3778888888888888888887774

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.6e-11  Score=50.18  Aligned_cols=28  Identities=21%  Similarity=0.551  Sum_probs=26.5

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ++||.|..|++.|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999975

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-11  Score=53.56  Aligned_cols=33  Identities=18%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             HHhcCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          71 FECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        71 ~~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      +|++++| |.|++|++.|...++|.+|++.+|++
T Consensus         2 ~HTgekP-~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKP-YECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCS-EECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCC-EeCCCCcccccchHHHHHHcccccCC
Confidence            3555554 66666666666666666666555544

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.2e-11  Score=52.87  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=30.0

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      .++|++||.|..||++|...+.|..|++.|++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            46899999999999999999999999999976

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=2.3e-11  Score=52.32  Aligned_cols=30  Identities=23%  Similarity=0.489  Sum_probs=16.2

Q ss_pred             CCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +|++||.|..|++.|.....|..|++.|.+
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccCC
Confidence            455555555555555555555555555543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.6e-11  Score=52.77  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=28.6

Q ss_pred             HhcCCCCccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          72 ECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        72 ~~~~~~~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      +++++| |.|.+|++.|...++|++|+++|+.+
T Consensus         2 ~TGekP-y~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRP-FVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcc-ccCCCCCCcccChHHHHHHccccCCc
Confidence            457676 99999999999999999999999864

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-11  Score=54.02  Aligned_cols=34  Identities=18%  Similarity=0.623  Sum_probs=30.9

Q ss_pred             cccCCCceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          42 FKPLQSALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        42 ~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      ..+++++||.|..||+.|...+.|..|+++|+++
T Consensus         5 ~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           5 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4568999999999999999999999999999873

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.2e-11  Score=47.82  Aligned_cols=26  Identities=19%  Similarity=0.553  Sum_probs=24.5

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHh
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      +||+|..||+.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999884

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.8e-11  Score=49.17  Aligned_cols=29  Identities=28%  Similarity=0.531  Sum_probs=26.9

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +||.|+.||+.|...+.|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999999853

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.7e-11  Score=51.17  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=17.8

Q ss_pred             ccCCC--CccccCCchhHHHHHHHhcCCCCC
Q psy3491          79 LQCPF--CPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        79 ~~c~~--C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      |.|+.  |++.|...+.|++|+++|++++||
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy   32 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY   32 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCE
Confidence            44543  666666666666666666666665

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=6.9e-12  Score=57.63  Aligned_cols=39  Identities=21%  Similarity=0.533  Sum_probs=27.5

Q ss_pred             HHHHHhHHhcCCCCccCCC--CccccCCchhHHHHHHHhcCCC
Q psy3491          65 LERHKKFECGKEAGLQCPF--CPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        65 l~~h~~~~~~~~~~~~c~~--C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      +..|+. +.++++ |.|.+  |++.|...++|.+|+++|+|+|
T Consensus         7 l~~h~~-h~gekp-y~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYVK-EMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCE-EETTTE-EECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchhh-ccCCCC-eECCcCCCCccccCchHHHhhcccccCCC
Confidence            444553 666665 88865  8888888888888888887775

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.03  E-value=3.6e-11  Score=49.60  Aligned_cols=29  Identities=24%  Similarity=0.638  Sum_probs=26.9

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCC
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +||.|+.|++.|...+.|..|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999853

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=6.7e-11  Score=51.64  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             cccCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          42 FKPLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        42 ~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +.++|++||.|..|++.|...+.|..|++.|..
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            457899999999999999999999999998864

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.5e-10  Score=47.97  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=23.4

Q ss_pred             CccCCC--CccccCCchhHHHHHHHhcCC
Q psy3491          78 GLQCPF--CPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        78 ~~~c~~--C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      ||.|.+  |++.|...+.|++|+++|+||
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            488977  999999999999999999886

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.4e-10  Score=50.22  Aligned_cols=32  Identities=16%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             ccCCCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          43 KPLQSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        43 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      .++|++||.|+.|++.|....+|..|++.+++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            46899999999999999999999999876554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.7e-10  Score=47.79  Aligned_cols=27  Identities=33%  Similarity=0.627  Sum_probs=21.4

Q ss_pred             CccCCC--CccccCCchhHHHHHHHhcCC
Q psy3491          78 GLQCPF--CPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        78 ~~~c~~--C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      ||.|++  |++.|...+.|.+|+++|+||
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCCC
Confidence            378865  888888888888888888875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.2e-10  Score=47.87  Aligned_cols=28  Identities=14%  Similarity=0.403  Sum_probs=24.1

Q ss_pred             CccCC--CCccccCCchhHHHHHHHhcCCC
Q psy3491          78 GLQCP--FCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        78 ~~~c~--~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      ||.|+  .|++.|...++|.+|+++|+|+|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            48884  69999999999999999999886

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.5e-09  Score=46.84  Aligned_cols=32  Identities=28%  Similarity=0.650  Sum_probs=29.4

Q ss_pred             eeccc--hhhhccCchHHHHHHhHHhcCCCCccCC
Q psy3491          50 FMCES--CHKTYKAKGSLERHKKFECGKEAGLQCP   82 (108)
Q Consensus        50 ~~C~~--c~~~f~~~~~l~~h~~~~~~~~~~~~c~   82 (108)
                      |.|+.  |++.|...+.|..|+++|+++++ |.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp-y~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC-EeCC
Confidence            67865  99999999999999999999887 9996

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.2e-09  Score=49.03  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=30.1

Q ss_pred             cCCCceeeccc--hhhhccCchHHHHHHhHHhcCC
Q psy3491          44 PLQSALFMCES--CHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        44 ~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +++++||.|..  |++.|...+.|..|+++|++++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            57899999977  9999999999999999999853

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.1e-09  Score=44.46  Aligned_cols=28  Identities=25%  Similarity=0.529  Sum_probs=25.6

Q ss_pred             ceeeccc--hhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCES--CHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~--c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|+.  |++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899976  999999999999999999873

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.7e-09  Score=44.68  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=25.7

Q ss_pred             ceeeccc--hhhhccCchHHHHHHhHHhcC
Q psy3491          48 ALFMCES--CHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        48 ~~~~C~~--c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +||.|+.  |++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899988  999999999999999999873

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.9e-09  Score=44.16  Aligned_cols=25  Identities=24%  Similarity=0.628  Sum_probs=18.2

Q ss_pred             ccCCC--CccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPF--CPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~--C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |.|.+  |++.|...++|.+|+++|+|
T Consensus         3 ~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           3 YACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             eECCCCCCCcEECchhHhhhhcCccCC
Confidence            77754  77777777777777777765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=6.7e-09  Score=43.44  Aligned_cols=26  Identities=15%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             ccCCC--CccccCCchhHHHHHHHhcCC
Q psy3491          79 LQCPF--CPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        79 ~~c~~--C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      |.|.+  |++.|...++|.+|+++|+.+
T Consensus         4 ~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             eECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            77765  777787777788887777653

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.9e-09  Score=42.00  Aligned_cols=25  Identities=36%  Similarity=0.711  Sum_probs=20.1

Q ss_pred             CccCCC--CccccCCchhHHHHHHHhc
Q psy3491          78 GLQCPF--CPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        78 ~~~c~~--C~~~f~~~~~l~~H~~~h~  102 (108)
                      ||.|..  |++.|...++|++|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            488865  8888888888888888875

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=5.7e-09  Score=42.69  Aligned_cols=27  Identities=22%  Similarity=0.671  Sum_probs=24.8

Q ss_pred             ceeeccc--hhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCES--CHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~~--c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +||.|+.  |++.|...++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899976  99999999999999999975

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6.7e-09  Score=43.21  Aligned_cols=29  Identities=34%  Similarity=0.747  Sum_probs=25.7

Q ss_pred             ceeecc--chhhhccCchHHHHHHhHHhcCC
Q psy3491          48 ALFMCE--SCHKTYKAKGSLERHKKFECGKE   76 (108)
Q Consensus        48 ~~~~C~--~c~~~f~~~~~l~~h~~~~~~~~   76 (108)
                      +||.|+  .|++.|...++|..|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589995  69999999999999999998853

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=9.6e-09  Score=39.12  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=18.3

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      ..|++|++.|+.+..|+.|+|.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            5677777777777777777777664

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1e-08  Score=41.77  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=22.6

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNGLH  107 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k~~  107 (108)
                      ..|..||+.|.--..|++|...|.+||||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            66777777777777777777777777777

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=2.2e-08  Score=41.85  Aligned_cols=28  Identities=29%  Similarity=0.554  Sum_probs=25.7

Q ss_pred             Cceeeccc--hhhhccCchHHHHHHhHHhc
Q psy3491          47 SALFMCES--CHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        47 ~~~~~C~~--c~~~f~~~~~l~~h~~~~~~   74 (108)
                      ++||.|..  |++.|...++|..|++.|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            57999987  99999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.6e-08  Score=40.86  Aligned_cols=26  Identities=19%  Similarity=0.487  Sum_probs=23.6

Q ss_pred             ceeeccc--hhhhccCchHHHHHHhHHh
Q psy3491          48 ALFMCES--CHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        48 ~~~~C~~--c~~~f~~~~~l~~h~~~~~   73 (108)
                      +||.|+.  ||+.|...++|..|++.|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899977  9999999999999999874

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=7.5e-08  Score=37.75  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=17.7

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|.+||+.|..+...++|.++|.
T Consensus         4 f~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           4 FACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHHGGGC
T ss_pred             cccchhhhhhhcchhhhhhhhhcc
Confidence            777777777777777777777664

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.5e-08  Score=36.98  Aligned_cols=26  Identities=31%  Similarity=0.630  Sum_probs=23.5

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      |+.|..|++.|+....|..|++.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57899999999999999999998864

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-07  Score=36.86  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      ..|.+||+.|...+.|++|+..|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46778888888888888888877765

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.8e-07  Score=36.66  Aligned_cols=27  Identities=22%  Similarity=0.575  Sum_probs=24.1

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHh
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      ++||.|..||+.|........|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            579999999999999999999988763

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=7.1e-07  Score=34.01  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             cCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          80 QCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        80 ~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      +|+.|.+.|.++..|+.|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            68999999999999999999999986

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.2e-07  Score=36.10  Aligned_cols=27  Identities=22%  Similarity=0.480  Sum_probs=12.8

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +||.|+.|+..|.....+..|.++|.+
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            344444444444444444444444443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.7e-07  Score=37.09  Aligned_cols=31  Identities=29%  Similarity=0.524  Sum_probs=28.0

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCCCCc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKEAGL   79 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~   79 (108)
                      +...|..||+.|.....|..|..+|.++++ |
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekp-y   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP-Y   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCC-C
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCC-C
Confidence            457899999999999999999999999876 6

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.6e-06  Score=34.39  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=24.9

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      ||.|++|...|..+..+..|.|.|-|.
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CcccchHHHHhhccccceEeeecccCc
Confidence            499999999999999999999999774

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.4e-06  Score=33.29  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      |.|+.|+..-..++-|++|+|.|+++.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888887788888888888887763

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.2e-06  Score=33.21  Aligned_cols=25  Identities=32%  Similarity=0.816  Sum_probs=13.3

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |+|+.|.......+.|..|.|.|+|
T Consensus         4 fkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           4 FKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             ceeeecccccCCchheEEeeecccC
Confidence            5555555444445555555555554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.8e-06  Score=32.38  Aligned_cols=26  Identities=27%  Similarity=0.703  Sum_probs=23.5

Q ss_pred             eeeccchhhhccCchHHHHHHhHHhc
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      .+.|..||++|...+.|.+|+..|++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccC
Confidence            36899999999999999999998876

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.83  E-value=4.2e-06  Score=31.34  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      |.|..|.++|-.++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578888888888888888888764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5.2e-06  Score=32.16  Aligned_cols=29  Identities=21%  Similarity=0.428  Sum_probs=25.9

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcC
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      ++||+|..|.....+.+.|..|.+.|+++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            47999999999999999999999998763

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.5e-06  Score=32.55  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=18.6

Q ss_pred             CccCCC--CccccCCchhHHHHHHHhcC
Q psy3491          78 GLQCPF--CPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        78 ~~~c~~--C~~~f~~~~~l~~H~~~h~~  103 (108)
                      ||.|.+  |++++...++|++|++.+||
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            377754  77777777778888777664

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.75  E-value=1e-05  Score=31.38  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=20.0

Q ss_pred             CccCC--CCccccCCchhHHHHHHHh
Q psy3491          78 GLQCP--FCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        78 ~~~c~--~C~~~f~~~~~l~~H~~~h  101 (108)
                      ||.|+  .|++.|...+.|++|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            48884  5899999999999998876

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=8.8e-06  Score=34.75  Aligned_cols=25  Identities=16%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             cCCCCccCCCCccccCCchhHHHHHH
Q psy3491          74 GKEAGLQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        74 ~~~~~~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      +-+| |.|..|++.|...+++.+|..
T Consensus         2 GiKP-YeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKP-YECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCC-EECSSSCCEESCHHHHHHHHH
T ss_pred             CCCc-eeccchhhhhhhHHHHHHhhh
Confidence            3355 889999999998888888864

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=8.6e-06  Score=34.78  Aligned_cols=26  Identities=23%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             CCCceeeccchhhhccCchHHHHHHh
Q psy3491          45 LQSALFMCESCHKTYKAKGSLERHKK   70 (108)
Q Consensus        45 ~~~~~~~C~~c~~~f~~~~~l~~h~~   70 (108)
                      +|-+||.|..|++.|....++..|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            36789999999999999999988854

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.3e-05  Score=31.15  Aligned_cols=26  Identities=23%  Similarity=0.517  Sum_probs=23.2

Q ss_pred             eeccchhhhccCchHHHHHHhHHhcC
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      |.|+.||......+.|..|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            67999999999999999999999874

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.60  E-value=1.3e-05  Score=31.91  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=18.3

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      ||.|.+|++.|..++.|.+|+..-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            47777777777777777777654443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.6e-05  Score=30.49  Aligned_cols=25  Identities=20%  Similarity=0.547  Sum_probs=12.8

Q ss_pred             ceeeccchhhhccCchHHHHHHhHH
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      +|+.|..|.......++|..|++.|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            3455555555555555555555444

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.56  E-value=2.5e-05  Score=33.00  Aligned_cols=25  Identities=16%  Similarity=0.541  Sum_probs=12.7

Q ss_pred             eeeccchhhhccCchHHHHHHhHHh
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      .|.|..|++.|.+...|-.|++.|.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             ccCCCCCCCccCCcccccchHhhhc
Confidence            3555555555555555555555443

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.4e-05  Score=30.85  Aligned_cols=27  Identities=33%  Similarity=0.669  Sum_probs=23.0

Q ss_pred             ceeeccc--hhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCES--CHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~~--c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +||.|..  |++++...++|+.|++.+++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5888965  99999999999999987653

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.46  E-value=3.3e-05  Score=32.64  Aligned_cols=29  Identities=21%  Similarity=0.560  Sum_probs=25.9

Q ss_pred             CCCccCCCCccccCCchhHHHHHHHhcCCC
Q psy3491          76 EAGLQCPFCPYKSKHKSNLKTHMAIRHQNG  105 (108)
Q Consensus        76 ~~~~~c~~C~~~f~~~~~l~~H~~~h~~~k  105 (108)
                      +. |.|.+|++.|.+..+|=.|++.|..++
T Consensus         4 r~-~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RS-YTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SS-EECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             Cc-cCCCCCCCccCCcccccchHhhhcchH
Confidence            44 999999999999999999999987765

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=5.7e-05  Score=29.27  Aligned_cols=26  Identities=19%  Similarity=0.509  Sum_probs=15.0

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      |.|.+|...|..+-.|+.|+..|+|+
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccCC
Confidence            55555555566555555565555553

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00015  Score=28.20  Aligned_cols=27  Identities=41%  Similarity=0.888  Sum_probs=18.7

Q ss_pred             CccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      ||.|+.|.....-.++|+.|+.+.|+.
T Consensus         2 py~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             Cccccccccccccchhhhhhhhccccc
Confidence            377777776666677777777765543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.2e-05  Score=28.80  Aligned_cols=25  Identities=28%  Similarity=0.648  Sum_probs=22.6

Q ss_pred             CccCCCCccccCCchhHHHHHHHhc
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      ||.|..|...-.-.++|+.|.|+|.
T Consensus         3 p~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CcccccccchhcchhhHhhhhhccc
Confidence            4999999988889999999999985

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3e-05  Score=30.89  Aligned_cols=21  Identities=29%  Similarity=0.801  Sum_probs=11.4

Q ss_pred             eeeccc--hhhhccCchHHHHHH
Q psy3491          49 LFMCES--CHKTYKAKGSLERHK   69 (108)
Q Consensus        49 ~~~C~~--c~~~f~~~~~l~~h~   69 (108)
                      ||.|..  |.+.|.+.++...|+
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            455543  555555555555554

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.30  E-value=4.3e-05  Score=28.50  Aligned_cols=24  Identities=25%  Similarity=0.740  Sum_probs=21.1

Q ss_pred             eeccchhhhccCchHHHHHHhHHh
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      |.|..|.++|...+.|..|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            579999999999999999998763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00012  Score=28.49  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +||+|..|.......++|..|+.+.++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            589999999888889999999887665

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00014  Score=28.14  Aligned_cols=28  Identities=25%  Similarity=0.604  Sum_probs=25.0

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +..|.|..|...|...-.|..|+..|++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccC
Confidence            3569999999999999999999999876

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00019  Score=30.07  Aligned_cols=27  Identities=22%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             Cceeec--cchhhhccCchHHHHHHhHHh
Q psy3491          47 SALFMC--ESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        47 ~~~~~C--~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      ++||.|  +.|+..|.+...|..|+.-|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            567777  557777777777777766554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00015  Score=28.08  Aligned_cols=23  Identities=35%  Similarity=0.752  Sum_probs=19.2

Q ss_pred             CccCCCCccccCCchhHHHHHHH
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAI  100 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~  100 (108)
                      ||.|..|.-.|..+.+|..|+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            48888888888888888888864

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00019  Score=26.65  Aligned_cols=21  Identities=29%  Similarity=0.656  Sum_probs=13.6

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      |.|..|...|..+..|+.|+.
T Consensus         3 ykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           3 YKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHH
Confidence            666666666666666666654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.09  E-value=0.00025  Score=27.47  Aligned_cols=26  Identities=15%  Similarity=0.236  Sum_probs=18.0

Q ss_pred             ccC--CCCccccCCchhHHHHHHHhcCC
Q psy3491          79 LQC--PFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        79 ~~c--~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      |.|  ..|.+-|-+...|.+|..+|+|+
T Consensus         3 fpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           3 FPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             EECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             cCcccccccccchhhhhhhhhhccccCC
Confidence            555  34777777777777777777764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00013  Score=28.28  Aligned_cols=24  Identities=33%  Similarity=0.754  Sum_probs=20.0

Q ss_pred             eeeccchhhhccCchHHHHHHhHH
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      ||.|..|+..|....+|..|+.+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688888998898888888888753

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.02  E-value=0.00012  Score=29.03  Aligned_cols=25  Identities=20%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             eeeccchhhhccCchHHHHHHhHHh
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      ||.|..|++.|....-|..|++..+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            7999999999999999999866433

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00013  Score=27.76  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=10.9

Q ss_pred             eeeccchhhhccCchHHHHH
Q psy3491          49 LFMCESCHKTYKAKGSLERH   68 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h   68 (108)
                      ||+|..||+.+....+|..|
T Consensus         1 pf~c~kcgkcyfrkenlleh   20 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEH   20 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHH
Confidence            35555555555555555544

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.92  E-value=0.00033  Score=27.00  Aligned_cols=25  Identities=28%  Similarity=0.663  Sum_probs=21.7

Q ss_pred             ceeeccc--hhhhccCchHHHHHHhHH
Q psy3491          48 ALFMCES--CHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        48 ~~~~C~~--c~~~f~~~~~l~~h~~~~   72 (108)
                      .||.|+.  |++.|...+.|.+|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4789964  999999999999998876

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0002  Score=28.41  Aligned_cols=26  Identities=15%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             CccCCC--CccccCCchhHHHHH-HHhcC
Q psy3491          78 GLQCPF--CPYKSKHKSNLKTHM-AIRHQ  103 (108)
Q Consensus        78 ~~~c~~--C~~~f~~~~~l~~H~-~~h~~  103 (108)
                      ||.|+.  |.|.|...+.-.+|+ |+|..
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CccccCCChhhhhcchhhhhhhccccccC
Confidence            489965  999999999999997 77754

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00053  Score=26.55  Aligned_cols=25  Identities=36%  Similarity=0.824  Sum_probs=15.4

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |+|..|.---.+.++|..|++.-|+
T Consensus         3 FkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           3 FKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             cccceecccccCcchHHHHHHHHcc
Confidence            6666665544566666666665554

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.75  E-value=0.00066  Score=26.26  Aligned_cols=27  Identities=30%  Similarity=0.599  Sum_probs=23.4

Q ss_pred             ceeecc--chhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCE--SCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~--~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +||+|.  .|.+.|.....|.+|...|++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            478885  599999999999999988876

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00034  Score=25.97  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             eeeccchhhhccCchHHHHHHh
Q psy3491          49 LFMCESCHKTYKAKGSLERHKK   70 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~   70 (108)
                      ||.|..|...|....+|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999974

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0006  Score=26.39  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=22.2

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +||+|..|..-..+.++|..|++--++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            489999998777888999999876554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00043  Score=26.47  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=18.3

Q ss_pred             ccCCCCccccCCchhHHHHHHHhc
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      .+|..|..+-.++..|+.|.|+|-
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            567778777778888888887764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00058  Score=25.70  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=16.5

Q ss_pred             eccchhhhccCchHHHHHHhHHhcC
Q psy3491          51 MCESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        51 ~C~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      +|+.|.+.|....-|..|-+.|+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4666777777776666666666653

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.0014  Score=24.83  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             CccCCCCccccCCchhHHHHHHH
Q psy3491          78 GLQCPFCPYKSKHKSNLKTHMAI  100 (108)
Q Consensus        78 ~~~c~~C~~~f~~~~~l~~H~~~  100 (108)
                      ||+|.-||+.+-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            59999999999999999988753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0033  Score=26.17  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=23.3

Q ss_pred             CCCCccC--CCCccccCCchhHHHHHHHhc
Q psy3491          75 KEAGLQC--PFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        75 ~~~~~~c--~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      +++ |.|  +.|+..|.....|..|...|.
T Consensus         4 dkP-F~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKP-FLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCC-EECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCc-eecCCCCccccccchHHHHHhhhhhe
Confidence            455 999  679999999999999998775

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.02  E-value=0.0031  Score=23.34  Aligned_cols=23  Identities=35%  Similarity=0.730  Sum_probs=13.4

Q ss_pred             ccCCCCccccCCchhHHHHHHHh
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      |.|+.|-+.|..+.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            45666666666666666665543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0021  Score=24.41  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=16.6

Q ss_pred             eeccchhhhccCchHHHHHHhHH
Q psy3491          50 FMCESCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~~~   72 (108)
                      |+|+.|+.....+++|..|++..
T Consensus         3 ~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHT
T ss_pred             ccCCcchhheeehhhhhHHhhhc
Confidence            67777777777777777776643

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.011  Score=22.64  Aligned_cols=26  Identities=19%  Similarity=0.507  Sum_probs=17.7

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      |.|..||+...+....+.|+..-|..
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             eechhHHHHHhhccCceEEEeecccC
Confidence            66777777777777777776655443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.64  E-value=0.01  Score=25.88  Aligned_cols=28  Identities=29%  Similarity=0.616  Sum_probs=17.3

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcCCCC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQNGL  106 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~~k~  106 (108)
                      -.|+.|+....+..+|.+|....|=.||
T Consensus        25 atcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          25 ATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            6666666666666666666665555444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0037  Score=23.75  Aligned_cols=25  Identities=24%  Similarity=0.604  Sum_probs=21.1

Q ss_pred             eeeccchhhhccCchHHHHHHhHHh
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      |-+|+.|.++......|..|.+.|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4578999999999999999988775

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0045  Score=25.15  Aligned_cols=19  Identities=21%  Similarity=0.079  Sum_probs=14.3

Q ss_pred             cccCCchhHHHHHHHhcCC
Q psy3491          86 YKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        86 ~~f~~~~~l~~H~~~h~~~  104 (108)
                      +.|.....|..|+|.|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4577777888888888775

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0039  Score=27.30  Aligned_cols=25  Identities=20%  Similarity=0.501  Sum_probs=21.6

Q ss_pred             eeeccchhhhccCchHHHHHHhHHh
Q psy3491          49 LFMCESCHKTYKAKGSLERHKKFEC   73 (108)
Q Consensus        49 ~~~C~~c~~~f~~~~~l~~h~~~~~   73 (108)
                      .+.|..|++.|.....|+.|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5889999999999999999977664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.01  Score=25.94  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.2

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |.|-.|+|.|.-...|+.|...|--
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeccccccccCCHHHHhHhHHhcCc
Confidence            8899999999999999999887643

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.019  Score=23.02  Aligned_cols=21  Identities=33%  Similarity=0.936  Sum_probs=10.9

Q ss_pred             eeccchhhhccCchHHHHHHh
Q psy3491          50 FMCESCHKTYKAKGSLERHKK   70 (108)
Q Consensus        50 ~~C~~c~~~f~~~~~l~~h~~   70 (108)
                      |.|..||+.|.....+.+|..
T Consensus         5 fvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHhh
Confidence            555555555555554444433

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.39  E-value=0.017  Score=21.61  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=15.8

Q ss_pred             CCCccccCCchhHHHHHHHhc
Q psy3491          82 PFCPYKSKHKSNLKTHMAIRH  102 (108)
Q Consensus        82 ~~C~~~f~~~~~l~~H~~~h~  102 (108)
                      ..|++.|..-..|+.|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            458888888778888877765

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.016  Score=23.45  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=17.9

Q ss_pred             cchhhhccCchHHHHHHhHHhcC
Q psy3491          53 ESCHKTYKAKGSLERHKKFECGK   75 (108)
Q Consensus        53 ~~c~~~f~~~~~l~~h~~~~~~~   75 (108)
                      .--++.|...+.|..|++.|+++
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCcchhHHHHHHHHhhcCCC
Confidence            33456688889999999999873

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.027  Score=21.46  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=16.3

Q ss_pred             CCCCccccCCchhHHHHHHHh
Q psy3491          81 CPFCPYKSKHKSNLKTHMAIR  101 (108)
Q Consensus        81 c~~C~~~f~~~~~l~~H~~~h  101 (108)
                      .+.|++.|+.+..|.-|++..
T Consensus         5 f~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           5 FPGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             STTTCCEESSHHHHHHHHHHG
T ss_pred             CCCchhhhccHHHHHhHHHHH
Confidence            357899999988888887643

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.83  E-value=0.019  Score=22.85  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=15.4

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      |.|.-||-.|++.+.|..|+.
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            777777777777777777653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.76  E-value=0.029  Score=22.55  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=17.5

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      |.|.+|.+.+..-+++-+|-.+.|.
T Consensus         9 yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           9 YRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             EEeehhhHHHHHHHHHHHHHHhhcc
Confidence            6777777777777777777665554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.038  Score=25.75  Aligned_cols=41  Identities=22%  Similarity=0.510  Sum_probs=27.1

Q ss_pred             cCCCceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCcccc
Q psy3491          44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKS   88 (108)
Q Consensus        44 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~f   88 (108)
                      .+....|.|+.|++.|.....+   +........ |.|..|+...
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~---~L~d~~~~~-F~C~~C~~el   49 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEAN---QLFDPMTGT-FRCTFCHTEV   49 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHH---HHEETTTTE-EBCSSSCCBC
T ss_pred             cccCCceECCCCCCCcchhhHH---HhcCcCCCe-EEecCCCCEE
Confidence            3456679999999998775433   232222244 9999997643

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.015  Score=27.66  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=13.1

Q ss_pred             ccCCCCccccCCchhHHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~   99 (108)
                      |-|..|++.|.+...|..|.+
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            566666666666666666543

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=0.067  Score=21.70  Aligned_cols=25  Identities=24%  Similarity=0.285  Sum_probs=17.9

Q ss_pred             ccCCCCccccCCchhHHHHHHHhcC
Q psy3491          79 LQCPFCPYKSKHKSNLKTHMAIRHQ  103 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~~~h~~  103 (108)
                      +.|.+|-+.|.+..++.+|+...|.
T Consensus         4 ltclecmrtfkssfsiwrhqvevhn   28 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVEVHN   28 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             ccHHHHHHHHHHHHHHHHhhheecc
Confidence            5677777888888777788765443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.19  Score=23.33  Aligned_cols=29  Identities=17%  Similarity=0.492  Sum_probs=24.7

Q ss_pred             CCceeeccchhhhccCchHHHHHHhHHhc
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKKFECG   74 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~~~~~   74 (108)
                      +...|+|..|...|.....|..|...|..
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhccH
Confidence            34469999999999999999999988864

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.72  E-value=0.17  Score=19.51  Aligned_cols=22  Identities=14%  Similarity=0.224  Sum_probs=11.6

Q ss_pred             CCccccCCchhHHHHHHHhcCC
Q psy3491          83 FCPYKSKHKSNLKTHMAIRHQN  104 (108)
Q Consensus        83 ~C~~~f~~~~~l~~H~~~h~~~  104 (108)
                      .|+-.|+..-.|..|.-.|+||
T Consensus        10 dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1          10 DCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             GGCCEESSHHHHHHHHHHHHCC
T ss_pred             CcchhhccchhhhHHhhhhcCC
Confidence            3555555555555555555543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.052  Score=25.67  Aligned_cols=26  Identities=19%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             CCceeeccchhhhccCchHHHHHHhH
Q psy3491          46 QSALFMCESCHKTYKAKGSLERHKKF   71 (108)
Q Consensus        46 ~~~~~~C~~c~~~f~~~~~l~~h~~~   71 (108)
                      |...|-|..|++.|.+...|..|.++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            44569999999999999999998764

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.11  Score=19.60  Aligned_cols=19  Identities=16%  Similarity=0.572  Sum_probs=15.3

Q ss_pred             chhhhccCchHHHHHHhHH
Q psy3491          54 SCHKTYKAKGSLERHKKFE   72 (108)
Q Consensus        54 ~c~~~f~~~~~l~~h~~~~   72 (108)
                      .|++.|...+.++.|+..|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            5888888888888887765

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.05  E-value=0.32  Score=21.06  Aligned_cols=20  Identities=20%  Similarity=0.632  Sum_probs=13.9

Q ss_pred             ccCCCCccccCCchhHHHHH
Q psy3491          79 LQCPFCPYKSKHKSNLKTHM   98 (108)
Q Consensus        79 ~~c~~C~~~f~~~~~l~~H~   98 (108)
                      -.|..|+..+..+.+++.|+
T Consensus         7 ~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccCcccceeeeeecchHhhh
Confidence            56777777777776666664

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=83.25  E-value=0.24  Score=20.29  Aligned_cols=27  Identities=22%  Similarity=0.529  Sum_probs=18.2

Q ss_pred             CceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccc
Q psy3491          47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYK   87 (108)
Q Consensus        47 ~~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~   87 (108)
                      ++-|.|..||...             .++ +|-.|++|+..
T Consensus         3 ~~~~vC~vCGyi~-------------~g~-~Pe~CPvCg~~   29 (36)
T d1yuza2           3 DKFHLCPICGYIH-------------KGE-DFEKCPICFRP   29 (36)
T ss_dssp             CCEEECSSSCCEE-------------ESS-CCSBCTTTCCB
T ss_pred             CCEEECCCCCCEe-------------eCC-CCCcCCCCCCc
Confidence            3568899998543             343 45889999753

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.09  E-value=0.23  Score=20.46  Aligned_cols=26  Identities=27%  Similarity=0.646  Sum_probs=17.9

Q ss_pred             ceeeccchhhhccCchHHHHHHhHHhcCCCCccCCCCccc
Q psy3491          48 ALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYK   87 (108)
Q Consensus        48 ~~~~C~~c~~~f~~~~~l~~h~~~~~~~~~~~~c~~C~~~   87 (108)
                      +-|.|..||..+             .++ +|..|++|+..
T Consensus         4 ~~~~C~vCG~i~-------------~g~-~P~~CPvCg~~   29 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDE-APEYCPVCGAP   29 (37)
T ss_dssp             CEEECTTTCCEE-------------ESC-CCSBCTTTCCB
T ss_pred             cEEECCCCCCEe-------------cCC-CCCcCCCCCCc
Confidence            458899998554             233 34889999753

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.88  E-value=0.67  Score=18.62  Aligned_cols=19  Identities=16%  Similarity=0.308  Sum_probs=9.7

Q ss_pred             CCCCccccCCchhHHHHHH
Q psy3491          81 CPFCPYKSKHKSNLKTHMA   99 (108)
Q Consensus        81 c~~C~~~f~~~~~l~~H~~   99 (108)
                      |..|.-.|++-..+..|+.
T Consensus        11 C~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHHH
Confidence            4455555555555555544