Psyllid ID: psy3507

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MHNYLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHccccccccccccHHHHcccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHcHHHEHHHHcccccccccccccccEcccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MHNYLVCTAsiglknpftlatCIHCRLLLVPTAEELMYhcktcstvshpnisykytcyacDYHTLMSEDMKKHmrkhtgekpykceycaysctqssaLKIHErkhtgdkpyicqqcRDTFSSLYLFRNRLQSHG
Flexible Loop (DISEMBL)
MHNYLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCstvshpnisYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG
Low Complexity Region (SEG)
MHNYLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG
Disordered region (IsUnstruct)
***YLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMS************EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN******
Disordered Region (DISOPRED)
MHNYLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ***
Disordered Region (DISEMBL)
MHNYLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG
Disordered Region (DISPRO)
MHNYLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHNYLVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q9QZ48	569	Zinc finger and BTB domai	yes	N/A	0.552	0.130	0.428	4e-16
O88939	569	Zinc finger and BTB domai	yes	N/A	0.552	0.130	0.428	4e-16
O95365	584	Zinc finger and BTB domai	yes	N/A	0.552	0.126	0.428	5e-16
O93567	546	Zinc finger and BTB domai	yes	N/A	0.455	0.111	0.484	1e-15
Q5R5U3	672	Zinc finger protein 271 O	yes	N/A	0.417	0.083	0.567	3e-15
Q14591	655	Zinc finger protein 271 O	no	N/A	0.649	0.132	0.459	6e-15
Q13360	481	Zinc finger protein 177 O	no	N/A	0.529	0.147	0.430	3e-14
Q8TC21	504	Zinc finger protein 596 O	no	N/A	0.462	0.123	0.465	4e-13
Q14584	549	Zinc finger protein 266 O	no	N/A	0.537	0.131	0.455	4e-13
Q9Z1D9	521	Zinc finger protein 394 O	no	N/A	0.723	0.186	0.370	4e-13

>sp|Q9QZ48|ZBT7A_RAT Zinc finger and BTB domain-containing protein 7A OS=Rattus norvegicus GN=Zbtb7a PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity). Specifically represses the transcription of the CDKN2A gene. Efficiently abrogates E2F1-dependent CDKN2A transactivation/de-repression. Binds to the consensus sequence 5'-[GA][CA]GACCCCCCCCC-3'.
Rattus norvegicus (taxid: 10116)

>sp|O88939|ZBT7A_MOUSE Zinc finger and BTB domain-containing protein 7A OS=Mus musculus GN=Zbtb7a PE=1 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals. Specifically represses the transcription of the CDKN2A gene. Efficiently abrogates E2F1-dependent CDKN2A transactivation/de-repression. Binds to the consensus sequence 5'-[GA][CA]GACCCCCCCCC-3'.

Mus musculus (taxid: 10090)

>sp|O95365|ZBT7A_HUMAN Zinc finger and BTB domain-containing protein 7A OS=Homo sapiens GN=ZBTB7A PE=1 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 384 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 443

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 444 GAAFAHNYDLKNHMRVH 460

Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity). Specifically represses the transcription of the CDKN2A gene. Efficiently abrogates E2F1-dependent CDKN2A transactivation/de-repression. Binds to the consensus sequence 5'-[GA][CA]GACCCCCCCCC-3'.

Homo sapiens (taxid: 9606)

>sp|O93567|ZBT7A_CHICK Zinc finger and BTB domain-containing protein 7A OS=Gallus gallus GN=ZBTB7A PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 43/64 (67%)

Query: 70  MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNR 129
           + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC   F+  Y  +N 
Sbjct: 374 LPRHIRTHTGEKPYECNICNVRFTRQDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLKNH 433

Query: 130 LQSH 133
           ++ H
Sbjct: 434 MRVH 437

May be involved in transcriptional regulation.

Gallus gallus (taxid: 9031)

>sp|Q5R5U3|ZN271_PONAB Zinc finger protein 271 OS=Pongo abelii GN=ZNF271 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 47/67 (70%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           YTC  C+ H   S D+ KH R HTGEKPYKC+ CA + +QSS L +H+R HTG+KPY C 
Sbjct: 219 YTCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDVCAKAFSQSSDLILHQRIHTGEKPYPCN 278

Query: 115 QCRDTFS 121
           QC  +FS
Sbjct: 279 QCSKSFS 285

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q14591|ZN271_HUMAN Zinc finger protein 271 OS=Homo sapiens GN=ZNF271 PE=2 SV=4

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 55/98 (56%), Gaps = 11/98 (11%)

Query: 35  ELMYHCKTCST--------VSHPNI---SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPY 83
           E  Y C+ CS         V H  I      YTC  C+ H   S D+ KH R HTGEKPY
Sbjct: 171 EKPYQCRHCSKSFSQRSDLVKHQRIHTGEKPYTCNQCNKHFSQSSDVIKHQRIHTGEKPY 230

Query: 84  KCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           KC+ C  + +QSS L +H+R HTG+KPY C QC  +FS
Sbjct: 231 KCDVCGKAFSQSSDLILHQRIHTGEKPYPCNQCSKSFS 268

May be involved in transcriptional regulation. Plays a role in the EBV-mediated transformation process.

Homo sapiens (taxid: 9606)

>sp|Q13360|ZN177_HUMAN Zinc finger protein 177 OS=Homo sapiens GN=ZNF177 PE=2 SV=4

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 50/79 (63%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           Y C  C    +    +KKHMR HTGEKPY+C++C  S +QSS L +H+R HTG+KPY C+
Sbjct: 284 YECSDCGKAFIFQSSLKKHMRSHTGEKPYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCK 343

Query: 115 QCRDTFSSLYLFRNRLQSH 133
           +C   F+     +  +++H
Sbjct: 344 ECGKAFTVPSSLQKHVRTH 362

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8TC21|ZN596_HUMAN Zinc finger protein 596 OS=Homo sapiens GN=ZNF596 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 43/73 (58%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           Y C+ C      S D+++H R HTGEKPY+C  C  +   SS L+ HER HTG+KPY C 
Sbjct: 391 YECHVCGKAFTESSDLRRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHTGEKPYECN 450

Query: 115 QCRDTFSSLYLFR 127
            C   F+  Y FR
Sbjct: 451 ICGKAFNRSYNFR 463

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q14584|ZN266_HUMAN Zinc finger protein 266 OS=Homo sapiens GN=ZNF266 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 48/79 (60%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           +TC  C         +  HMR HTGEKPYKC+ C  S + S++ ++HER HTG+KPY C+
Sbjct: 464 FTCMECGKAFKFPTCVNLHMRIHTGEKPYKCKQCGKSFSYSNSFQLHERTHTGEKPYECK 523

Query: 115 QCRDTFSSLYLFRNRLQSH 133
           +C   FSS   FRN  + H
Sbjct: 524 ECGKAFSSSSSFRNHERRH 542

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9Z1D9|ZN394_MOUSE Zinc finger protein 394 OS=Mus musculus GN=Znf394 PE=2 SV=3

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 33  AEELMYHCKTCSTVSHPNISYK----------YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
           A E  Y C+ C  + H +  ++          Y C  C+       D+ KH R HTGEKP
Sbjct: 406 ASEKYYKCEECGEIVHVSSLFRHQRLHRGERPYKCGDCEKSFRQRSDLFKHQRTHTGEKP 465

Query: 83  YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF-SSLYLFRNR 129
           Y C  C    +QS+ L  H+R HTG+KPY C QC + F  S +L R++
Sbjct: 466 YACVVCGRRFSQSATLIKHQRTHTGEKPYKCFQCGERFRQSTHLVRHQ 513

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
72028083	939	PREDICTED: uncharacterized protein LOC59	0.694	0.099	0.411	5e-15
18539217	939	enhancer binding protein [Paracentrotus	0.694	0.099	0.411	6e-15
291223509	852	PREDICTED: enhancer binding protein-like	0.723	0.113	0.411	8e-15
16758916	569	zinc finger and BTB domain-containing pr	0.552	0.130	0.428	3e-14
3599511	565	leukemia/lymphoma related factor LRF [Mu	0.552	0.130	0.428	3e-14
149034453	569	zinc finger and BTB domain containing 7a	0.552	0.130	0.428	3e-14
402903754	584	PREDICTED: zinc finger and BTB domain-co	0.552	0.126	0.428	3e-14
74191949	569	unnamed protein product [Mus musculus]	0.552	0.130	0.428	3e-14
117647238	569	zinc finger and BTB domain-containing pr	0.552	0.130	0.428	3e-14
7705375	584	zinc finger and BTB domain-containing pr	0.552	0.126	0.428	3e-14

>gi|72028083|ref|XP_797592.1| PREDICTED: uncharacterized protein LOC593001 [Strongylocentrotus purpuratus]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 9/102 (8%)

Query: 32  TAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS 91
           T+ EL  H K   T   P     + C  CDY ++ +  +K+HMR HTGEKPYKC  C Y+
Sbjct: 511 TSGELGRHMKYMHTHEKP-----HKCPLCDYLSVEASKIKRHMRSHTGEKPYKCTLCEYA 565

Query: 92  CTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
            T +  LK H R HTG++P+ C QC  +FS     ++ L+ H
Sbjct: 566 STDNYKLKRHMRVHTGERPFNCSQCDQSFSQ----KSSLKEH 603

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|18539217|emb|CAD22532.1| enhancer binding protein [Paracentrotus lividus]

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 32  TAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS 91
           T+ EL  H K   T   P     + C  CDY ++ +  +K+HMR HTGEKPYKC  C Y 
Sbjct: 512 TSGELGRHMKYMHTHEKP-----HKCPLCDYLSVEASKIKRHMRSHTGEKPYKCTLCEYC 566

Query: 92  CTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
            T +  LK H R HTG++P+ C QC   FS     ++ L+ H
Sbjct: 567 STDNYKLKRHMRVHTGERPFSCSQCDQAFSQ----KSSLKEH 604

Source: Paracentrotus lividus

Species: Paracentrotus lividus

Genus: Paracentrotus

Family: Echinidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|291223509|ref|XP_002731752.1| PREDICTED: enhancer binding protein-like [Saccoglossus kowalevskii]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 5/102 (4%)

Query: 32  TAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS 91
           T+ EL  H K   T   P     + C  CDY ++ S  +K+HMR HTGEKP+KC+ CAY+
Sbjct: 455 TSGELARHTKYIHTHEKP-----HKCPLCDYISVESSKIKRHMRSHTGEKPFKCQLCAYA 509

Query: 92  CTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
            T +  LK H R HTG+KP+ C  C   FS     +  +  H
Sbjct: 510 STDNYKLKRHMRVHTGEKPFKCPDCDMAFSQKSSLKEHMWKH 551

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|16758916|ref|NP_446454.1| zinc finger and BTB domain-containing protein 7A [Rattus norvegicus] gi|46397077|sp|Q9QZ48.1|ZBT7A_RAT RecName: Full=Zinc finger and BTB domain-containing protein 7A; AltName: Full=Leukemia/lymphoma-related factor; AltName: Full=Osteoclast-derived zinc finger protein gi|6329066|dbj|BAA86393.1| osteoclast-derived zinc finger (OCZF) protein [Rattus norvegicus]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|3599511|gb|AAC35367.1| leukemia/lymphoma related factor LRF [Mus musculus]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149034453|gb|EDL89190.1| zinc finger and BTB domain containing 7a [Rattus norvegicus]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402903754|ref|XP_003914723.1| PREDICTED: zinc finger and BTB domain-containing protein 7A isoform 1 [Papio anubis] gi|402903756|ref|XP_003914724.1| PREDICTED: zinc finger and BTB domain-containing protein 7A isoform 2 [Papio anubis] gi|387539686|gb|AFJ70470.1| zinc finger and BTB domain-containing protein 7A [Macaca mulatta]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 384 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 443

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 444 GAAFAHNYDLKNHMRVH 460

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74191949|dbj|BAE32917.1| unnamed protein product [Mus musculus]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|117647238|ref|NP_034861.3| zinc finger and BTB domain-containing protein 7A [Mus musculus] gi|205371830|sp|O88939.2|ZBT7A_MOUSE RecName: Full=Zinc finger and BTB domain-containing protein 7A; AltName: Full=Leukemia/lymphoma-related factor; AltName: Full=POZ and Krueppel erythroid myeloid ontogenic factor; Short=POK erythroid myeloid ontogenic factor; Short=Pokemon gi|148699508|gb|EDL31455.1| mCG12141 [Mus musculus] gi|187952921|gb|AAI38525.1| Zbtb7a protein [Mus musculus] gi|219518614|gb|AAI45312.1| Zinc finger and BTB domain containing 7a [Mus musculus]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|7705375|ref|NP_056982.1| zinc finger and BTB domain-containing protein 7A [Homo sapiens] gi|114674703|ref|XP_524058.2| PREDICTED: zinc finger and BTB domain-containing protein 7A [Pan troglodytes] gi|46397100|sp|O95365.1|ZBT7A_HUMAN RecName: Full=Zinc finger and BTB domain-containing protein 7A; AltName: Full=Factor binding IST protein 1; Short=FBI-1; AltName: Full=Factor that binds to inducer of short transcripts protein 1; AltName: Full=HIV-1 1st-binding protein 1; AltName: Full=Leukemia/lymphoma-related factor; AltName: Full=POZ and Krueppel erythroid myeloid ontogenic factor; Short=POK erythroid myeloid ontogenic factor; Short=Pokemon; AltName: Full=TTF-I-interacting peptide 21; Short=TIP21; AltName: Full=Zinc finger protein 857A gi|3860089|gb|AAC72973.1| HIV-1 inducer of short transcripts binding protein [Homo sapiens] gi|109731291|gb|AAI13512.1| Zinc finger and BTB domain containing 7A [Homo sapiens] gi|119589673|gb|EAW69267.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589674|gb|EAW69268.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589676|gb|EAW69270.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589677|gb|EAW69271.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589678|gb|EAW69272.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|307686181|dbj|BAJ21021.1| zinc finger and BTB domain containing 7A [synthetic construct] gi|410214634|gb|JAA04536.1| zinc finger and BTB domain containing 7A [Pan troglodytes] gi|410248790|gb|JAA12362.1| zinc finger and BTB domain containing 7A [Pan troglodytes] gi|410340211|gb|JAA39052.1| zinc finger and BTB domain containing 7A [Pan troglodytes]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 57  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 384 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 443

Query: 117 RDTFSSLYLFRNRLQSH 133
              F+  Y  +N ++ H
Sbjct: 444 GAAFAHNYDLKNHMRVH 460

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
ZFIN|ZDB-GENE-050913-150	188	zgc:113372 "zgc:113372" [Danio	0.783	0.558	0.428	7.5e-18
ZFIN|ZDB-GENE-050913-148	315	zgc:113377 "zgc:113377" [Danio	0.783	0.333	0.392	3.2e-17
ZFIN|ZDB-GENE-050913-91	309	zgc:113886 "zgc:113886" [Danio	0.783	0.339	0.392	4.1e-17
ZFIN|ZDB-GENE-080219-33	334	zgc:171599 "zgc:171599" [Danio	0.753	0.302	0.428	4.5e-17
UNIPROTKB|Q14591	655	ZNF271 "Zinc finger protein 27	0.649	0.132	0.459	6.3e-17
UNIPROTKB|F1SAJ6	670	ZNF35 "Uncharacterized protein	0.708	0.141	0.445	8.4e-17
UNIPROTKB|J9P3X3	703	LOC100684599 "Uncharacterized	0.708	0.135	0.445	9.1e-17
UNIPROTKB|G3MXV1	319	ZNF705A "Uncharacterized prote	0.589	0.247	0.455	1.3e-16
UNIPROTKB|G3N2G8	759	ZNF397 "Zinc finger protein 39	0.708	0.125	0.436	1.7e-16
ZFIN|ZDB-GENE-071004-118	281	zgc:174224 "zgc:174224" [Danio	0.783	0.373	0.398	1.8e-16

ZFIN|ZDB-GENE-050913-150 zgc:113372 "zgc:113372" [Danio rerio (taxid:7955)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 48/112 (42%), Positives = 59/112 (52%)

Query:    22 CIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEK 81
             C+ C    V TA +L  H      V H   + KYTC  C       +++K+H R HTGEK
Sbjct:    77 CMTCSQTFV-TAGQLKRH-----QVIHAGET-KYTCSHCGKAFTQVQNLKRHERIHTGEK 129

Query:    82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
             PYKC +C  S TQ   LK HER HTG+KPY CQQC   F+ L   +     H
Sbjct:   130 PYKCSHCDKSFTQLPNLKCHERIHTGEKPYRCQQCLKRFTQLSQLKKHTNMH 181

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-050913-148 zgc:113377 "zgc:113377" [Danio rerio (taxid:7955)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 44/112 (39%), Positives = 60/112 (53%)

Query:    22 CIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEK 81
             C+ C+   V TA +L  H +   T   P     YTC  C+     S  +K H   HTGEK
Sbjct:   204 CLECQQTFV-TAGQLKQH-QRIHTGEKP-----YTCSHCNKRFNQSGSLKTHEMIHTGEK 256

Query:    82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
             PYKC +C    +QS ++K HER HTG+KPY C QC  +F+ L+     ++ H
Sbjct:   257 PYKCSHCNKRFSQSGSMKAHERIHTGEKPYSCDQCPKSFTHLFQRNKHMKIH 308

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-050913-91 zgc:113886 "zgc:113886" [Danio rerio (taxid:7955)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 44/112 (39%), Positives = 56/112 (50%)

Query:    22 CIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEK 81
             C HC      +A  L  H +   T   P     Y C  CD     +  +K H R HTGEK
Sbjct:   198 CSHCNKRFSQSAN-LKKH-ERIHTGEKP-----YKCSHCDKRFSQTGHLKTHERIHTGEK 250

Query:    82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
             PYKC +C    +QS  +K HER HTG+KPY C QC  +FS L   +  ++ H
Sbjct:   251 PYKCSHCDKRFSQSGDMKTHERNHTGEKPYTCDQCLKSFSQLITLKKHMKIH 302

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080219-33 zgc:171599 "zgc:171599" [Danio rerio (taxid:7955)]

 Score = 211 (79.3 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 48/112 (42%), Positives = 60/112 (53%)

Query:    22 CIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEK 81
             C  C    V TA +L  H +   T   P     YTC  CD      +++K+H   H+GEK
Sbjct:   223 CSECEKTFV-TAGQLKQH-QVIHTGEKP-----YTCSHCDKRFTQVQNLKRHEVIHSGEK 275

Query:    82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
             PYKC +C  S TQ   LK HER HTG+KPY CQQC   F+ L    ++LQ H
Sbjct:   276 PYKCSHCDKSFTQLPNLKCHERIHTGEKPYRCQQCLKRFTQL----SQLQKH 323

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q14591 ZNF271 "Zinc finger protein 271" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 45/98 (45%), Positives = 55/98 (56%)

Query:    35 ELMYHCKTCST--------VSHPNI---SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPY 83
             E  Y C+ CS         V H  I      YTC  C+ H   S D+ KH R HTGEKPY
Sbjct:   171 EKPYQCRHCSKSFSQRSDLVKHQRIHTGEKPYTCNQCNKHFSQSSDVIKHQRIHTGEKPY 230

Query:    84 KCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
             KC+ C  + +QSS L +H+R HTG+KPY C QC  +FS
Sbjct:   231 KCDVCGKAFSQSSDLILHQRIHTGEKPYPCNQCSKSFS 268

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SAJ6 ZNF35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 8.4e-17, P = 8.4e-17
 Identities = 49/110 (44%), Positives = 60/110 (54%)

Query:    23 IHCRLLLVPTAEELMYHCKTCST--------VSHPNI---SYKYTCYACDYHTLMSEDMK 71
             IH R   + T E+  Y C  CS         V H  I      YTC  C+ H   S D+ 
Sbjct:   180 IHQR---IHTGEK-PYQCSHCSKSFSQRSDLVKHQRIHTGEKPYTCNQCNKHFSQSSDVI 235

Query:    72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
             KH R HTGEKPYKC+ C  + +QSS L +H+R HTG+KPY C QC  +FS
Sbjct:   236 KHQRIHTGEKPYKCDVCGKAFSQSSDLILHQRIHTGEKPYPCNQCSKSFS 285

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P3X3 LOC100684599 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 9.1e-17, P = 9.1e-17
 Identities = 49/110 (44%), Positives = 60/110 (54%)

Query:    23 IHCRLLLVPTAEELMYHCKTCST--------VSHPNI---SYKYTCYACDYHTLMSEDMK 71
             IH R   + T E+  Y C  CS         V H  I      YTC  C+ H   S D+ 
Sbjct:   197 IHQR---IHTGEK-PYQCSHCSKSFSQRSDLVKHQRIHTGEKPYTCNQCNKHFSQSSDVI 252

Query:    72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
             KH R HTGEKPYKC+ C  + +QSS L +H+R HTG+KPY C QC  +FS
Sbjct:   253 KHQRIHTGEKPYKCDVCGKAFSQSSDLILHQRIHTGEKPYPCNQCSKSFS 302

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MXV1 ZNF705A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 36/79 (45%), Positives = 48/79 (60%)

Query:    55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
             Y C+ C    + S D++KH   HTGEKPY+C  C  + +QSS L+ HER HTG++PY CQ
Sbjct:   197 YECHICGNAFIQSSDLRKHNLTHTGEKPYECHLCGKAFSQSSNLRQHERTHTGEQPYECQ 256

Query:   115 QCRDTFSSLYLFRNRLQSH 133
              C  TFS     R   ++H
Sbjct:   257 LCGKTFSKCSALRRHERTH 275

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3N2G8 ZNF397 "Zinc finger protein 397" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 48/110 (43%), Positives = 60/110 (54%)

Query:    23 IHCRLLLVPTAEELMYHCKTCST--------VSHPNI---SYKYTCYACDYHTLMSEDMK 71
             IH R   + T E+  Y C  CS         + H  I      YTC  C+ H   S D+ 
Sbjct:   348 IHQR---IHTGEK-PYQCGHCSKSFSQRSDLIKHQRIHTGEKPYTCSLCNKHFSQSSDVI 403

Query:    72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
             KH R HTGEKPYKC+ C  + +QSS L +H+R HTG+KPY C QC  +FS
Sbjct:   404 KHQRIHTGEKPYKCDVCGKAFSQSSDLILHQRIHTGEKPYRCNQCNKSFS 453

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-071004-118 zgc:174224 "zgc:174224" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 45/113 (39%), Positives = 59/113 (52%)

Query:    22 CIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEK 81
             C  C    V TAE L  H +   T   P     Y C  CD        +K H R HTGEK
Sbjct:   168 CFECGKSFV-TAEHLKQH-QRIHTGEKP-----YKCSHCDKAFNQLIHLKIHERTHTGEK 220

Query:    82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ-SH 133
             PYKC +C  + +QS  LK H R HTG++PY+C +C ++F+ L   R  ++ SH
Sbjct:   221 PYKCSHCGKTFSQSPTLKAHSRTHTGERPYVCVECGESFNHLLSLRIHIRKSH 273

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R5U3	ZN271_PONAB	No assigned EC number	0.5671	0.4179	0.0833	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	4e-04

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 69 DMKKHMRKHTGEKPYKCEYCAYSCTQ 94
          ++++HMR HTGEKPYKC  C  S + 
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG2462|consensus	279		99.95
KOG2462|consensus	279		99.94
KOG1074|consensus	958		99.76
KOG3608|consensus	467		99.75
KOG3576|consensus	267		99.72
KOG3576|consensus	267		99.7
KOG1074|consensus	958		99.69
KOG3623|consensus	1007		99.68
KOG3623|consensus	1007		99.63
KOG3608|consensus	467		99.48
PHA00733	128	hypothetical protein	99.34
PLN03086	567	PRLI-interacting factor K; Provisional	99.32
PLN03086	567	PRLI-interacting factor K; Provisional	99.22
PHA02768	55	hypothetical protein; Provisional	99.19
PHA00733	128	hypothetical protein	99.12
PHA02768	55	hypothetical protein; Provisional	99.1
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.01
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.89
KOG3993|consensus	500		98.81
PHA00732	79	hypothetical protein	98.73
KOG3993|consensus	500		98.65
PHA00616	44	hypothetical protein	98.65
PHA00616	44	hypothetical protein	98.58
PHA00732	79	hypothetical protein	98.53
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.52
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.34
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.31
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.29
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.26
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.23
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.21
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.93
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.9
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.89
smart00355	26	ZnF_C2H2 zinc finger.	97.84
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.56
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.56
PRK04860	160	hypothetical protein; Provisional	97.39
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.37
smart00355	26	ZnF_C2H2 zinc finger.	97.36
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.19
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.09
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.06
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.01
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.97
PRK04860	160	hypothetical protein; Provisional	96.87
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.75
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	96.71
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.68
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.59
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.08
KOG2893|consensus	341		96.0
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	95.87
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	95.21
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.11
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	95.01
KOG2231|consensus	669		94.93
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.8
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.71
COG4049	65	Uncharacterized protein containing archaeal-type C	94.56
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.53
COG5048	467	FOG: Zn-finger [General function prediction only]	94.3
COG5048	467	FOG: Zn-finger [General function prediction only]	94.23
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	94.18
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	94.12
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	94.0
KOG2893|consensus	341		93.99
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.94
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.93
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	93.87
KOG1146|consensus	1406		93.68
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	93.55
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.92
KOG2186|consensus	276		92.8
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	92.56
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	92.52
KOG1146|consensus	1406		92.42
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	92.38
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	92.36
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	92.28
KOG2907|consensus	116		91.96
KOG2482|consensus	423		91.66
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	91.47
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	91.2
KOG2231|consensus	669		91.13
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.06
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	90.74
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	90.63
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.39
KOG4173|consensus	253		90.15
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	90.09
COG4049	65	Uncharacterized protein containing archaeal-type C	89.96
PF14353	128	CpXC: CpXC protein	89.63
PHA00626	59	hypothetical protein	89.51
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	89.31
COG1592	166	Rubrerythrin [Energy production and conversion]	88.96
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	88.91
smart00531	147	TFIIE Transcription initiation factor IIE.	88.41
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	87.78
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	87.08
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	86.82
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	86.7
COG1198	730	PriA Primosomal protein N' (replication factor Y)	86.67
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	86.65
PRK00432	50	30S ribosomal protein S27ae; Validated	86.4
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	86.21
PRK06266	178	transcription initiation factor E subunit alpha; V	85.7
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	85.68
TIGR00595	505	priA primosomal protein N'. All proteins in this f	85.6
KOG2785|consensus	390		85.52
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	85.48
PRK06266	178	transcription initiation factor E subunit alpha; V	85.21
COG1773	55	Rubredoxin [Energy production and conversion]	84.91
smart00531	147	TFIIE Transcription initiation factor IIE.	84.81
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	83.73
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	83.49
KOG4167|consensus	907		83.38
KOG2807|consensus	378		83.38
PRK09678	72	DNA-binding transcriptional regulator; Provisional	83.26
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	83.0
PRK10220	111	hypothetical protein; Provisional	82.9
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	82.9
KOG2186|consensus	276		82.85
COG4530	129	Uncharacterized protein conserved in bacteria [Fun	82.8
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	81.86
PF14369	35	zf-RING_3: zinc-finger	81.71
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	81.56
COG1198	730	PriA Primosomal protein N' (replication factor Y)	81.21
PRK03681	114	hypA hydrogenase nickel incorporation protein; Val	81.07
PF05191	36	ADK_lid: Adenylate kinase, active site lid; InterP	80.97
COG4957	148	Predicted transcriptional regulator [Transcription	80.11
PRK04023	1121	DNA polymerase II large subunit; Validated	80.09

>KOG2462|consensus

Probab=99.95  E-value=1.3e-28  Score=163.95  Aligned_cols=114  Identities=23%  Similarity=0.448  Sum_probs=100.1

Q ss_pred             ceecCccccc----------ccccCCC---CccccCCCCCCccc---------CCCCcceeeCCCCCccCChHHHHHHHH
Q psy3507          18 TLATCIHCRL----------LLVPTAE---ELMYHCKTCSTVSH---------PNISYKYTCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        18 ~~~~C~~C~~----------h~~~h~~---~~~~~C~~C~~~f~---------~~~~~~~~C~~C~~~f~~~~~l~~H~~   75 (134)
                      ..++|+.|++          |..+|..   .+.+.|++||+.|.         .+...+++|.+||+.|...-.|..|++
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiR  208 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIR  208 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccc
Confidence            3577888844          4444432   67799999999998         445578999999999999999999999


Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      +|+||+||.|+.|+++|..+++|+.|+++|.+.|+|+|..|+|+|...+.|.+|..
T Consensus       209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999975

>KOG2462|consensus

Probab=99.94  E-value=1.2e-27  Score=159.34  Aligned_cols=98  Identities=28%  Similarity=0.604  Sum_probs=91.3

Q ss_pred             CccccCCCCCCcccCCC--------------CcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHH
Q psy3507          35 ELMYHCKTCSTVSHPNI--------------SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKI  100 (134)
Q Consensus        35 ~~~~~C~~C~~~f~~~~--------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  100 (134)
                      ...|+|++||+.+....              .+.+.|++|++.|.+-..|++|+++|.  .+++|.+||+.|.++.-|+.
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhc
Confidence            45699999999998433              567999999999999999999999997  67999999999999999999


Q ss_pred             HhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         101 HERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       101 H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+|+|+|||||.|+.|+|+|..+++|+.||+||+
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS  239 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHS  239 (279)
T ss_pred             ccccccCCCCccCCcccchhcchHHHHHHHHhhc
Confidence            9999999999999999999999999999999995

>KOG1074|consensus

Probab=99.76  E-value=1.2e-19  Score=135.65  Aligned_cols=81  Identities=26%  Similarity=0.565  Sum_probs=73.3

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCC----CeecC---cChhhhcCHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK----PYICQ---QCRDTFSSLYLF  126 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~~C~---~C~~~F~~~~~l  126 (134)
                      +-+|-+|.++..-++.|+.|.++|+|++||+|.+||++|.++.+|+.|+.+|...-    +|.|+   +|-+.|...-.|
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l  684 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL  684 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence            47899999999999999999999999999999999999999999999999887643    48899   899999999999


Q ss_pred             HHHHHhcC
Q psy3507         127 RNRLQSHG  134 (134)
Q Consensus       127 ~~H~~~H~  134 (134)
                      ..|+++|+
T Consensus       685 pQhIriH~  692 (958)
T KOG1074|consen  685 PQHIRIHL  692 (958)
T ss_pred             cceEEeec
Confidence            99999884

>KOG3608|consensus

Probab=99.75  E-value=4.6e-19  Score=122.08  Aligned_cols=107  Identities=24%  Similarity=0.512  Sum_probs=96.3

Q ss_pred             ccccccCCCCccccCCCCCCccc-------------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccc
Q psy3507          26 RLLLVPTAEELMYHCKTCSTVSH-------------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC   92 (134)
Q Consensus        26 ~~h~~~h~~~~~~~C~~C~~~f~-------------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   92 (134)
                      +.|.++|+++|...|+.||..|.             .....+|.|..|.+.|.+...|..|+..|..  .|+|+.|+.+.
T Consensus       196 reH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc  273 (467)
T KOG3608|consen  196 REHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTC  273 (467)
T ss_pred             HHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCC
Confidence            66999999999999999999998             2223479999999999999999999998874  59999999999


Q ss_pred             cCchhHHHHhhh-cCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          93 TQSSALKIHERK-HTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        93 ~~~~~l~~H~~~-h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ..+++|..|++. |..++||+|..|++.|.+.+.|.+|+.+|+
T Consensus       274 ~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  274 SSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             CChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence            999999999885 888999999999999999999999999885

>KOG3576|consensus

Probab=99.72  E-value=1.6e-18  Score=111.43  Aligned_cols=77  Identities=27%  Similarity=0.626  Sum_probs=44.0

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~  130 (134)
                      .|.|.+|++.|.....|.+|++.|...+.+-|..||+.|...-.|++|+++|+|.+||+|..|+++|..+-+|..|+
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            35555555555555555555555555555555555555555555555555555555555555555555555555554

>KOG3576|consensus

Probab=99.70  E-value=4.3e-18  Score=109.49  Aligned_cols=100  Identities=29%  Similarity=0.545  Sum_probs=89.5

Q ss_pred             CCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHh
Q psy3507          34 EELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE  102 (134)
Q Consensus        34 ~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  102 (134)
                      +...|.|.+|++.|.           +...+.+.|..||+.|.+.-+|++|+++|+|.+||+|..|+++|.++-+|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            345699999999998           667778999999999999999999999999999999999999999999999997


Q ss_pred             hh-cC----------CCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         103 RK-HT----------GDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       103 ~~-h~----------~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +. |.          .++.|.|+.||.+-.....+..|++.|
T Consensus       194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~  235 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLH  235 (267)
T ss_pred             HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhc
Confidence            75 43          245699999999999999999998876

>KOG1074|consensus

Probab=99.69  E-value=8.7e-18  Score=125.95  Aligned_cols=52  Identities=33%  Similarity=0.695  Sum_probs=49.8

Q ss_pred             eeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          83 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ..|.+|++.|...+.|..|+++|++++||.|..|++.|..+.+|+.||.+|.
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~  931 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHM  931 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhcccc
Confidence            3699999999999999999999999999999999999999999999999984

>KOG3623|consensus

Probab=99.68  E-value=6.6e-18  Score=125.22  Aligned_cols=82  Identities=27%  Similarity=0.639  Sum_probs=77.9

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHH
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNR  129 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H  129 (134)
                      ..+.+|.|+.|++.|...+.|.+|.--|+|.+||+|.+|.++|..+-.|..|+|.|.|+|||+|..|+|+|....++..|
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQH  969 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQH  969 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhh
Confidence            33457999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH
Q psy3507         130 LQ  131 (134)
Q Consensus       130 ~~  131 (134)
                      |.
T Consensus       970 MN  971 (1007)
T KOG3623|consen  970 MN  971 (1007)
T ss_pred             hc
Confidence            84

>KOG3623|consensus

Probab=99.63  E-value=3.8e-17  Score=121.23  Aligned_cols=94  Identities=24%  Similarity=0.594  Sum_probs=83.3

Q ss_pred             ccCCCCCCccc-------------CCCCcceeeCCCCCccCChHHHHHHHHHhcCC-------------CceeccccCcc
Q psy3507          38 YHCKTCSTVSH-------------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGE-------------KPYKCEYCAYS   91 (134)
Q Consensus        38 ~~C~~C~~~f~-------------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------~~~~C~~C~~~   91 (134)
                      .+|++|.+.+.             ...+..|.|..|..+|..+..|.+||.+|...             +.|+|.+||++
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA  290 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA  290 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence            67888888776             33445689999999999999999999988532             44999999999


Q ss_pred             ccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507          92 CTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus        92 f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      |..+-.|+.|+|+|.|+|||.|+.|+|+|....++..||.
T Consensus       291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             hhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            9999999999999999999999999999999999999874

>KOG3608|consensus

Probab=99.48  E-value=1.8e-14  Score=99.64  Aligned_cols=81  Identities=27%  Similarity=0.576  Sum_probs=44.6

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc--cCccccCchhHHHHhhh-cCCC--CCeecCcChhhhcCH
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERK-HTGD--KPYICQQCRDTFSSL  123 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~-h~~~--~~~~C~~C~~~F~~~  123 (134)
                      +...++|+|+.|++.+.+.+.|.+|..+|+ +..|.|+.  |...+.+...+..|++. |.|.  .+|.|..|++.|++-
T Consensus       287 Hs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G  365 (467)
T KOG3608|consen  287 HSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSG  365 (467)
T ss_pred             hccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccc
Confidence            444455555555555555555555555554 33455544  55555555555555443 2232  336777777777777


Q ss_pred             HHHHHHH
Q psy3507         124 YLFRNRL  130 (134)
Q Consensus       124 ~~l~~H~  130 (134)
                      .+|.+|+
T Consensus       366 ~~L~~HL  372 (467)
T KOG3608|consen  366 KSLSAHL  372 (467)
T ss_pred             hhHHHHH
Confidence            7777775

>PHA00733 hypothetical protein

Probab=99.34  E-value=8.3e-13  Score=81.17  Aligned_cols=79  Identities=15%  Similarity=0.280  Sum_probs=62.9

Q ss_pred             CcceeeCCCCCccCChHHHHHH--HH---HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHH
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKH--MR---KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF  126 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l  126 (134)
                      .+++.|.+|...|..+..|..+  +.   .+.+.+||.|+.|++.|.+...|..|++.+  +.+|.|..|++.|.....|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            4456777777777666665554  11   234578999999999999999999999876  4579999999999999999


Q ss_pred             HHHHHh
Q psy3507         127 RNRLQS  132 (134)
Q Consensus       127 ~~H~~~  132 (134)
                      .+|+..
T Consensus       116 ~~H~~~  121 (128)
T PHA00733        116 LDHVCK  121 (128)
T ss_pred             HHHHHH
Confidence            999854

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.32  E-value=7.4e-12  Score=92.76  Aligned_cols=73  Identities=21%  Similarity=0.466  Sum_probs=32.8

Q ss_pred             CCCccc-CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhh
Q psy3507          43 CSTVSH-PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF  120 (134)
Q Consensus        43 C~~~f~-~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F  120 (134)
                      ||..|. ...+..+.|+.|++.|. ...|..|+..++  .++.|+ |+..+ .+..|..|+.+|.+++++.|..|++.|
T Consensus       441 Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        441 CGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             ccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            444444 22223344555554443 344445544432  344454 54332 334444454444444555555555444

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.22  E-value=6.4e-11  Score=87.88  Aligned_cols=102  Identities=17%  Similarity=0.342  Sum_probs=82.1

Q ss_pred             cccccccCCCCccccCCCCCCcccC--------CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccC--
Q psy3507          25 CRLLLVPTAEELMYHCKTCSTVSHP--------NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQ--   94 (134)
Q Consensus        25 C~~h~~~h~~~~~~~C~~C~~~f~~--------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~--   94 (134)
                      |+..++....++.+.|+.|++.|..        .-..++.|+ |++.+ .+..|..|+.+|.+.+++.|+.|++.+..  
T Consensus       441 Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~  518 (567)
T PLN03086        441 CGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGG  518 (567)
T ss_pred             ccceeeccccccCccCCCCCCccchHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCc
Confidence            5666666666778999999999871        113678999 99755 67999999999999999999999999852  


Q ss_pred             --------chhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHH
Q psy3507          95 --------SSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus        95 --------~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~  130 (134)
                              .+.|..|.... |.+++.|..||+.|..+ .|..|+
T Consensus       519 ~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~  560 (567)
T PLN03086        519 SAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQ  560 (567)
T ss_pred             cccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHH
Confidence                    35799998885 89999999999998754 566665

>PHA02768 hypothetical protein; Provisional

Probab=99.19  E-value=5.6e-12  Score=65.27  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=24.6

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL   98 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   98 (134)
                      .|+|+.||+.|...++|..|+++|.  ++++|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3556666666666666666666655  455566666655554443

>PHA00733 hypothetical protein

Probab=99.12  E-value=5.3e-11  Score=73.21  Aligned_cols=72  Identities=19%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             CCccccCCCCCCccc----------------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchh
Q psy3507          34 EELMYHCKTCSTVSH----------------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSA   97 (134)
Q Consensus        34 ~~~~~~C~~C~~~f~----------------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   97 (134)
                      ..+++.|.+|.+.|.                ..+..+|.|+.|++.|.....|..|++.+  +.+|.|+.|++.|.....
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence            356788999987776                34467899999999999999999999876  357999999999999999


Q ss_pred             HHHHhhhcCC
Q psy3507          98 LKIHERKHTG  107 (134)
Q Consensus        98 l~~H~~~h~~  107 (134)
                      |..|+...++
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            9999886543

>PHA02768 hypothetical protein; Provisional

Probab=99.10  E-value=4.5e-11  Score=61.91  Aligned_cols=43  Identities=19%  Similarity=0.358  Sum_probs=39.5

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHH
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF  126 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l  126 (134)
                      -|.|+.||+.|...++|..|+++|+  ++|+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3899999999999999999999998  699999999999977665

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.01  E-value=1.8e-10  Score=51.33  Aligned_cols=24  Identities=54%  Similarity=1.092  Sum_probs=14.9

Q ss_pred             HHHHhhhcCCCCCeecCcChhhhc
Q psy3507          98 LKIHERKHTGDKPYICQQCRDTFS  121 (134)
Q Consensus        98 l~~H~~~h~~~~~~~C~~C~~~F~  121 (134)
                      |..|+++|++++||.|+.|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            556666666666666666666654

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.89  E-value=1.9e-09  Score=47.96  Aligned_cols=26  Identities=58%  Similarity=1.258  Sum_probs=23.9

Q ss_pred             HHHHHHHHhcCCCceeccccCccccC
Q psy3507          69 DMKKHMRKHTGEKPYKCEYCAYSCTQ   94 (134)
Q Consensus        69 ~l~~H~~~h~~~~~~~C~~C~~~f~~   94 (134)
                      +|..|+++|++++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58899999999999999999999863

...

>KOG3993|consensus

Probab=98.81  E-value=7.6e-10  Score=78.58  Aligned_cols=24  Identities=21%  Similarity=0.552  Sum_probs=22.2

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhc
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      .|.|..|++.|.+...|+.|+.+|
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlth  379 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTH  379 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhh
Confidence            499999999999999999998877

>PHA00732 hypothetical protein

Probab=98.73  E-value=6.2e-09  Score=58.62  Aligned_cols=48  Identities=29%  Similarity=0.525  Sum_probs=37.3

Q ss_pred             ceeeCCCCCccCChHHHHHHHHH-hcCCCceeccccCccccCchhHHHHhhhcCC
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      +|.|+.|++.|.....|..|++. |.   ++.|+.|++.|.   .+..|.++...
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccCC
Confidence            47899999999999999999874 54   357999999887   47788765443

>KOG3993|consensus

Probab=98.65  E-value=7.4e-09  Score=73.68  Aligned_cols=120  Identities=19%  Similarity=0.295  Sum_probs=76.1

Q ss_pred             ccCCccceecCccccc----------ccccCCCCccccCCCCCCccc----------------------------C----
Q psy3507          12 GLKNPFTLATCIHCRL----------LLVPTAEELMYHCKTCSTVSH----------------------------P----   49 (134)
Q Consensus        12 ~~~~~~~~~~C~~C~~----------h~~~h~~~~~~~C~~C~~~f~----------------------------~----   49 (134)
                      +..|+...++|..|+.          |.-.-....-|+|++|+++|+                            .    
T Consensus       260 ~i~n~iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r  339 (500)
T KOG3993|consen  260 GIPNVIGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR  339 (500)
T ss_pred             cCcccHHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence            5567777788888833          222222223488888888887                            0    


Q ss_pred             ------------CCCcceeeCCCCCccCChHHHHHHHHHhcCCC------------------------------------
Q psy3507          50 ------------NISYKYTCYACDYHTLMSEDMKKHMRKHTGEK------------------------------------   81 (134)
Q Consensus        50 ------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------------------------------------   81 (134)
                                  ..+..|.|.+|++.|.....|+.|+.+|....                                    
T Consensus       340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~  419 (500)
T KOG3993|consen  340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGD  419 (500)
T ss_pred             hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccc
Confidence                        11224888888888888888888876654210                                    


Q ss_pred             ----------ceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507          82 ----------PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus        82 ----------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                                .-.++.++..+.++..-..+.+.-..+.-|.|..|..+|.+...|.+|+.
T Consensus       420 ~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin  479 (500)
T KOG3993|consen  420 EVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHIN  479 (500)
T ss_pred             ceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhh
Confidence                      01234444444444443344444344556899999999999999999974

>PHA00616 hypothetical protein

Probab=98.65  E-value=8.9e-09  Score=50.91  Aligned_cols=32  Identities=16%  Similarity=0.318  Sum_probs=16.2

Q ss_pred             eeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      |+|+.||+.|...+.|..|++.|++++++.|+
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            44555555555555555555555555544443

>PHA00616 hypothetical protein

Probab=98.58  E-value=2.8e-08  Score=49.17  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=31.8

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      ||+|+.||+.|...++|..|++.|++++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999999999999999999999998864

>PHA00732 hypothetical protein

Probab=98.53  E-value=9.2e-08  Score=53.87  Aligned_cols=46  Identities=28%  Similarity=0.640  Sum_probs=39.2

Q ss_pred             ceeccccCccccCchhHHHHhhh-cCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      ||.|+.|++.|.+...|..|++. |.   ++.|+.||+.|.+   |..|+++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~~---l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYRR---LNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeCC---hhhhhccc
Confidence            58899999999999999999985 65   3689999999984   88887654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.52  E-value=6e-08  Score=41.77  Aligned_cols=23  Identities=30%  Similarity=0.691  Sum_probs=17.9

Q ss_pred             eecCcChhhhcCHHHHHHHHHhc
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.|+.|++.|.+...|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            57788888888888888887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.34  E-value=9.3e-07  Score=46.28  Aligned_cols=47  Identities=26%  Similarity=0.528  Sum_probs=22.6

Q ss_pred             eeccccCccccCchhHHHHhhh-cCCC-CCeecCcChhhhcCHHHHHHHHHh
Q psy3507          83 YKCEYCAYSCTQSSALKIHERK-HTGD-KPYICQQCRDTFSSLYLFRNRLQS  132 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~F~~~~~l~~H~~~  132 (134)
                      |.|+.|++ ..+...|..|... |..+ +.+.|++|...+.  .+|..|+..
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            45555555 2334455555333 3332 3355555555433  255555543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.31  E-value=4.8e-07  Score=53.06  Aligned_cols=73  Identities=23%  Similarity=0.373  Sum_probs=20.5

Q ss_pred             eeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          56 TCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        56 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +|..|+..|.+...|..|+...++...   + ....+.....+..+++.-. ...+.|..|++.|.+...|..||+.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Ccccccccccccccccccccccccccc---c-ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            488999999999999999975443211   1 1112223334444433222 23689999999999999999999764

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.29  E-value=1.7e-06  Score=45.30  Aligned_cols=50  Identities=24%  Similarity=0.460  Sum_probs=39.2

Q ss_pred             ceeeCCCCCccCChHHHHHHHHH-hcCC-CceeccccCccccCchhHHHHhhhcC
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRK-HTGE-KPYKCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      .|.|+.|++ ..+...|..|... |..+ +.+.|++|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            488999999 5677899999775 5543 5699999998654  48999988654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.26  E-value=1e-06  Score=37.81  Aligned_cols=22  Identities=32%  Similarity=0.727  Sum_probs=13.5

Q ss_pred             eeeCCCCCccCChHHHHHHHHH
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRK   76 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~   76 (134)
                      |+|+.|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.23  E-value=6.7e-07  Score=39.95  Aligned_cols=24  Identities=46%  Similarity=0.912  Sum_probs=19.8

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhc
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      ||+|..|++.|.+..+|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            578888888888888888888776

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.21  E-value=1.1e-06  Score=37.80  Aligned_cols=23  Identities=26%  Similarity=0.683  Sum_probs=15.9

Q ss_pred             eecCcChhhhcCHHHHHHHHHhc
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.|+.|++.|.+...|+.|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            56777777777777777777765

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.93  E-value=1.3e-05  Score=34.34  Aligned_cols=23  Identities=26%  Similarity=0.686  Sum_probs=12.2

Q ss_pred             eeeCCCCCccCChHHHHHHHHHh
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      |.|+.|++.|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45566666666666666665544

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.90  E-value=7.9e-06  Score=36.35  Aligned_cols=24  Identities=38%  Similarity=0.863  Sum_probs=13.5

Q ss_pred             ceeccccCccccCchhHHHHhhhc
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      +|.|..|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            355555555555555555555544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.89  E-value=3.4e-06  Score=58.49  Aligned_cols=52  Identities=33%  Similarity=0.692  Sum_probs=36.5

Q ss_pred             CCceeccc--cCccccCchhHHHHhhh-c------------------CCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507          80 EKPYKCEY--CAYSCTQSSALKIHERK-H------------------TGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus        80 ~~~~~C~~--C~~~f~~~~~l~~H~~~-h------------------~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      ++||+|++  |++.+.....|+.|+.- |                  ...|||.|++|+|.|+....|+-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            36666655  66666666666666542 2                  23589999999999999888887753

>smart00355 ZnF_C2H2 zinc finger

Probab=97.84  E-value=1.6e-05  Score=34.62  Aligned_cols=23  Identities=26%  Similarity=0.746  Sum_probs=18.0

Q ss_pred             eecCcChhhhcCHHHHHHHHHhc
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46788888888888888888765

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.56  E-value=4.9e-05  Score=33.05  Aligned_cols=23  Identities=35%  Similarity=0.726  Sum_probs=15.9

Q ss_pred             eecCcChhhhcCHHHHHHHHHhc
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.|..|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56777777777777777777543

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.56  E-value=2.8e-05  Score=54.07  Aligned_cols=54  Identities=30%  Similarity=0.605  Sum_probs=44.7

Q ss_pred             CCCcceeeCC--CCCccCChHHHHHHHHH-hc------------------CCCceeccccCccccCchhHHHHhh
Q psy3507          50 NISYKYTCYA--CDYHTLMSEDMKKHMRK-HT------------------GEKPYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        50 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~-h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      .++++|+|++  |.+.+.....|+.|+.- |.                  ..+||+|++|++.+.....|+.|+.
T Consensus       345 ~d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ecCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            3458899988  99999999999999862 31                  2488999999999999999998854

>PRK04860 hypothetical protein; Provisional

Probab=97.39  E-value=0.00013  Score=46.55  Aligned_cols=38  Identities=29%  Similarity=0.771  Sum_probs=30.6

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCH
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSL  123 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~  123 (134)
                      +|.|. |+.   ....+..|.++|+++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            58887 876   566788888889888889999998887643

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.37  E-value=0.00018  Score=36.55  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=10.0

Q ss_pred             CceeccccCccccCchhHHHHhhhcCC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      .|-.|++|+..+.+..+|.+|+...++
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhc
Confidence            334444444444444444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.36  E-value=0.00025  Score=30.56  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=12.9

Q ss_pred             eeCCCCCccCChHHHHHHHHHh
Q psy3507          56 TCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        56 ~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      .|+.|++.|.....|..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            4556666666666666665544

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.19  E-value=0.00022  Score=30.93  Aligned_cols=21  Identities=29%  Similarity=0.692  Sum_probs=11.9

Q ss_pred             eeccccCccccCchhHHHHhh
Q psy3507          83 YKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |.|++|+..|.+...|..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            345555555555555555554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.09  E-value=0.00012  Score=32.54  Aligned_cols=21  Identities=24%  Similarity=0.672  Sum_probs=11.2

Q ss_pred             eecCcChhhhcCHHHHHHHHH
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            445555555555555555543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.06  E-value=0.0012  Score=33.62  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=23.2

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKP   82 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   82 (134)
                      ..+.+-.|++|+..+....+|.+|+...++.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            345678999999999999999999988777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.01  E-value=0.00061  Score=29.20  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=15.1

Q ss_pred             eecCcChhhhcCHHHHHHHHHhc
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |+|+.|+.... ...|.+|++.|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            67888887776 77888888764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.97  E-value=0.00095  Score=28.59  Aligned_cols=22  Identities=36%  Similarity=1.013  Sum_probs=12.6

Q ss_pred             eeeCCCCCccCChHHHHHHHHHh
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      |.|+.|+.... +..|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            45666666665 66666666654

>PRK04860 hypothetical protein; Provisional

Probab=96.87  E-value=0.00086  Score=42.89  Aligned_cols=39  Identities=26%  Similarity=0.635  Sum_probs=33.8

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQS   95 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   95 (134)
                      .+|.|. |+.   ....+..|.++|.++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            469998 987   667889999999999999999999987654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.75  E-value=0.00066  Score=30.05  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=16.7

Q ss_pred             eeccccCccccCchhHHHHhhh
Q psy3507          83 YKCEYCAYSCTQSSALKIHERK  104 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      |.|+.|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5678888888888888777664

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>TIGR00622 ssl1 transcription factor ssl1

Probab=96.71  E-value=0.0037  Score=37.42  Aligned_cols=89  Identities=18%  Similarity=0.399  Sum_probs=55.7

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCCccCChHHHHHHHHHhc-------CCCc-------eeccccCccccCchhHHHHhh
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHT-------GEKP-------YKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------~~~~-------~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |.|+.|+...   -+.|-.|+.|+-.......|.+.-  |+       .+.+       -.|-.|...|........  .
T Consensus         2 Y~CPrC~skv---C~LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~   74 (112)
T TIGR00622         2 YFCPQCRAKV---CELPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--D   74 (112)
T ss_pred             ccCCCCCCCc---cCCCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCcccccc--c
Confidence            7788887653   456778888888888877777532  21       0111       137778888876431110  0


Q ss_pred             hcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         104 KHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       104 ~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      .-.....|+|+.|...|-..-+.-.|...|
T Consensus        75 ~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        75 ELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ccccccceeCCCCCCccccccchhhhhhcc
Confidence            012234688999988887777777776666

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.68  E-value=0.0015  Score=28.43  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=14.0

Q ss_pred             eecCcChhhhcCHHHHHHHHHh
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQS  132 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~  132 (134)
                      ..|+.||+.| ..+.|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3577777777 56677777653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.59  E-value=0.003  Score=36.64  Aligned_cols=23  Identities=30%  Similarity=0.736  Sum_probs=17.5

Q ss_pred             ceeccccCccccCchhHHHHhhh
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERK  104 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      .+.|..|++.|.+...|..|++.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHcC
Confidence            57888888888888888888775

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.08  E-value=0.0053  Score=28.65  Aligned_cols=22  Identities=23%  Similarity=0.535  Sum_probs=14.7

Q ss_pred             CeecCcChhhhcCHHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      +|.|..|++.|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4667777777776667766663

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893|consensus

Probab=96.00  E-value=0.0027  Score=42.85  Aligned_cols=48  Identities=23%  Similarity=0.439  Sum_probs=39.8

Q ss_pred             eeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHH-hhhcC
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHT  106 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~  106 (134)
                      -+|-+|++.|....-|.+|++.    +.|+|.+|.+.+.+.-.|..| +.+|.
T Consensus        11 pwcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             ceeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhh
Confidence            4688999999999999998875    349999999988888888888 66553

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=95.87  E-value=0.012  Score=30.89  Aligned_cols=10  Identities=40%  Similarity=1.408  Sum_probs=6.5

Q ss_pred             CceeccccCc
Q psy3507          81 KPYKCEYCAY   90 (134)
Q Consensus        81 ~~~~C~~C~~   90 (134)
                      .+|.|+.||.
T Consensus        47 ~~Y~CP~CGF   56 (59)
T PRK14890         47 NPYTCPKCGF   56 (59)
T ss_pred             CceECCCCCC
Confidence            4577777764

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=95.21  E-value=0.018  Score=30.28  Aligned_cols=47  Identities=19%  Similarity=0.537  Sum_probs=22.8

Q ss_pred             cCCCCCCccc-CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCc
Q psy3507          39 HCKTCSTVSH-PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY   90 (134)
Q Consensus        39 ~C~~C~~~f~-~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   90 (134)
                      .|.-||.... ......|.|+.||..--.+...-     .....+|.|+.||.
T Consensus        11 ~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~C-----Rk~g~~Y~Cp~CGF   58 (61)
T COG2888          11 VCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKC-----RKLGNPYRCPKCGF   58 (61)
T ss_pred             eeccCCCEeccCCceeEeeCCCCCceeeehhhhH-----HHcCCceECCCcCc
Confidence            4555555552 33334566666664333322211     11235677777774

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.11  E-value=0.021  Score=26.51  Aligned_cols=22  Identities=14%  Similarity=0.425  Sum_probs=15.0

Q ss_pred             ceeeCCCCCccCChHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~   75 (134)
                      +|.|+.|++.|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4667777777777777766654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=95.01  E-value=0.02  Score=28.63  Aligned_cols=28  Identities=21%  Similarity=0.489  Sum_probs=15.9

Q ss_pred             cccCCCCCCcccCCCCc-ceeeCCCCCcc
Q psy3507          37 MYHCKTCSTVSHPNISY-KYTCYACDYHT   64 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~~-~~~C~~C~~~f   64 (134)
                      .|.|+.||..|...... ...|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEYGTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCCCCceECCCCCCeE
Confidence            46677777766522221 56677776543

>KOG2231|consensus

Probab=94.93  E-value=0.063  Score=41.69  Aligned_cols=91  Identities=22%  Similarity=0.400  Sum_probs=54.6

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCCccCChHHHHHHHH-HhcCCCceeccccC---------ccccCchhHHHHhhhcC-
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCEYCA---------YSCTQSSALKIHERKHT-  106 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~---------~~f~~~~~l~~H~~~h~-  106 (134)
                      +.|.+|+..|...-. .-.|..| -.|.+...|+.|+. .|..   +.|.+|-         ...-+...|..|+..-- 
T Consensus       100 ~~C~~C~~~~~~~~~-~~~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~  174 (669)
T KOG2231|consen  100 HSCHICDRRFRALYN-KKECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP  174 (669)
T ss_pred             hhcCccccchhhhcc-cCCCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHHHHHHHHhcCCC
Confidence            668888887742111 2357777 67778889999985 4432   3333322         12234466777765421 


Q ss_pred             CCCC----eecCcChhhhcCHHHHHHHHHhc
Q psy3507         107 GDKP----YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       107 ~~~~----~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +++.    -.|..|...|.....|.+|++.+
T Consensus       175 d~~s~rGhp~C~~C~~~fld~~el~rH~~~~  205 (669)
T KOG2231|consen  175 DDESCRGHPLCKFCHERFLDDDELYRHLRFD  205 (669)
T ss_pred             ccccccCCccchhhhhhhccHHHHHHhhccc
Confidence            1222    35777888888888888887643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.80  E-value=0.0058  Score=43.44  Aligned_cols=76  Identities=21%  Similarity=0.398  Sum_probs=40.3

Q ss_pred             ceeeCC--CCCccCChHHHHHHHHHhcCCCceeccccCc---------cccCchhHHHHhhhcCCCCCe----ecCcChh
Q psy3507          54 KYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY---------SCTQSSALKIHERKHTGDKPY----ICQQCRD  118 (134)
Q Consensus        54 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~---------~f~~~~~l~~H~~~h~~~~~~----~C~~C~~  118 (134)
                      .|.|+.  |.........|..|.++.++.  +.|.+|-.         ...++..|..|......+.-|    .|..|..
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            366665  555555667777787764432  44554432         122334455554432222122    4666666


Q ss_pred             hhcCHHHHHHHHH
Q psy3507         119 TFSSLYLFRNRLQ  131 (134)
Q Consensus       119 ~F~~~~~l~~H~~  131 (134)
                      .|..-..|.+|++
T Consensus       229 ~FYdDDEL~~HcR  241 (493)
T COG5236         229 YFYDDDELRRHCR  241 (493)
T ss_pred             eecChHHHHHHHH
Confidence            6666666666654

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.71  E-value=0.024  Score=26.26  Aligned_cols=9  Identities=33%  Similarity=1.283  Sum_probs=4.6

Q ss_pred             CCeecCcCh
Q psy3507         109 KPYICQQCR  117 (134)
Q Consensus       109 ~~~~C~~C~  117 (134)
                      .++.|+.||
T Consensus        16 ~~~~CP~Cg   24 (33)
T cd00350          16 APWVCPVCG   24 (33)
T ss_pred             CCCcCcCCC
Confidence            345555554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.56  E-value=0.026  Score=29.23  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=13.0

Q ss_pred             CCCceeccccCccccCchhHHHHhh
Q psy3507          79 GEKPYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |+..+.|+.|+..|....++..|..
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhh
Confidence            4444555555555555555555543

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.53  E-value=0.029  Score=33.52  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=22.9

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCCccCCh
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDYHTLMS   67 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~~f~~~   67 (134)
                      ..|+.||++|.--+..|-.|+.||..|...
T Consensus        10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence            568888888886666777788888877665

The function of members of this family is unknown.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.30  E-value=0.012  Score=42.65  Aligned_cols=63  Identities=29%  Similarity=0.491  Sum_probs=51.9

Q ss_pred             cceeeCCCCCccCChHHHHHHHH--HhcCC--Cceecc--ccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMR--KHTGE--KPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      .++.|..|...|.....+..|.+  .|.++  +++.|+  .|++.|.....+..|...|.+..++.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL  356 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence            46788888888888888888888  78888  888888  78888888888888888888777665543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.23  E-value=0.0087  Score=43.39  Aligned_cols=54  Identities=33%  Similarity=0.615  Sum_probs=49.6

Q ss_pred             CceeccccCccccCchhHHHHhh--hcCCC--CCeecC--cChhhhcCHHHHHHHHHhcC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHER--KHTGD--KPYICQ--QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .++.|..|...|.....|..|.+  .|.++  +++.|+  .|++.|.+...+..|..+|+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc
Confidence            36889999999999999999999  89999  999999  79999999999999988774

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=94.18  E-value=0.045  Score=27.21  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=15.1

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCCc
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDYH   63 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~~   63 (134)
                      |.|..||..|.-....+..|+.||..
T Consensus         3 Y~C~~Cg~~~~~~~~~~irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIKSKDVVRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecCCCCceECCCCCce
Confidence            56666666665444445666666643

present in RNA polymerase I, II and III

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=94.12  E-value=0.052  Score=25.70  Aligned_cols=10  Identities=20%  Similarity=0.673  Sum_probs=5.0

Q ss_pred             cCCCCCCccc
Q psy3507          39 HCKTCSTVSH   48 (134)
Q Consensus        39 ~C~~C~~~f~   48 (134)
                      .|+.|+..|.
T Consensus         4 ~Cp~C~~~y~   13 (36)
T PF13717_consen    4 TCPNCQAKYE   13 (36)
T ss_pred             ECCCCCCEEe
Confidence            4555555544

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=94.00  E-value=0.05  Score=25.07  Aligned_cols=26  Identities=19%  Similarity=0.466  Sum_probs=13.5

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCCc
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDYH   63 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~~   63 (134)
                      |.|..||..+.-....+..|+.||..
T Consensus         1 Y~C~~Cg~~~~~~~~~~irC~~CG~R   26 (32)
T PF03604_consen    1 YICGECGAEVELKPGDPIRCPECGHR   26 (32)
T ss_dssp             EBESSSSSSE-BSTSSTSSBSSSS-S
T ss_pred             CCCCcCCCeeEcCCCCcEECCcCCCe
Confidence            45666666665444445566666643

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>KOG2893|consensus

Probab=93.99  E-value=0.011  Score=39.93  Aligned_cols=42  Identities=21%  Similarity=0.386  Sum_probs=34.1

Q ss_pred             eccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHH
Q psy3507          84 KCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNR  129 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H  129 (134)
                      -|-.|++.|.....|.+|++    .+-|+|.+|-+...+-..|..|
T Consensus        12 wcwycnrefddekiliqhqk----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence            47889999999999999987    4569999998877666666555

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.94  E-value=0.13  Score=27.12  Aligned_cols=41  Identities=22%  Similarity=0.673  Sum_probs=18.0

Q ss_pred             cCcccccccccCCCCccccCCCCCCccc------CCCCcceeeCCCC
Q psy3507          21 TCIHCRLLLVPTAEELMYHCKTCSTVSH------PNISYKYTCYACD   61 (134)
Q Consensus        21 ~C~~C~~h~~~h~~~~~~~C~~C~~~f~------~~~~~~~~C~~C~   61 (134)
                      .|..|+.-+..-..--.|.|+.||+.--      .....+|+|+.||
T Consensus        11 ~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CG   57 (61)
T COG2888          11 VCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCG   57 (61)
T ss_pred             eeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcCCceECCCcC
Confidence            3444444333333333455666653322      2223355666555

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.93  E-value=0.054  Score=25.79  Aligned_cols=10  Identities=30%  Similarity=0.783  Sum_probs=4.6

Q ss_pred             cCCCCCCccc
Q psy3507          39 HCKTCSTVSH   48 (134)
Q Consensus        39 ~C~~C~~~f~   48 (134)
                      .|+.|+..|.
T Consensus         4 ~CP~C~~~~~   13 (38)
T TIGR02098         4 QCPNCKTSFR   13 (38)
T ss_pred             ECCCCCCEEE
Confidence            4444444443

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=93.87  E-value=0.14  Score=26.95  Aligned_cols=10  Identities=30%  Similarity=0.946  Sum_probs=4.6

Q ss_pred             cccCCCCCCc
Q psy3507          37 MYHCKTCSTV   46 (134)
Q Consensus        37 ~~~C~~C~~~   46 (134)
                      .|.|+.||+.
T Consensus        25 ~F~CPnCG~~   34 (59)
T PRK14890         25 KFLCPNCGEV   34 (59)
T ss_pred             EeeCCCCCCe
Confidence            3445555443

>KOG1146|consensus

Probab=93.68  E-value=0.02  Score=47.18  Aligned_cols=70  Identities=29%  Similarity=0.548  Sum_probs=43.8

Q ss_pred             cceeeCCCCCccCChHHHHHHHHH-hcCCCceeccccCccccCchhHHHHhhh------cCCCCCeecCcChhhhcCHHH
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAYSCTQSSALKIHERK------HTGDKPYICQQCRDTFSSLYL  125 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~------h~~~~~~~C~~C~~~F~~~~~  125 (134)
                      +.+.|+.|+..|.....|..||+. |.....   .+|.       ..+.|.+.      -.+.++|.|..|...+....+
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~-------~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~  533 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCK-------AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGN  533 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccch---hHhH-------hccccccccccccccCCCCcccceeeeeeeecchH
Confidence            557777777777777777777775 322111   1221       11112111      123468999999999999999


Q ss_pred             HHHHHHh
Q psy3507         126 FRNRLQS  132 (134)
Q Consensus       126 l~~H~~~  132 (134)
                      |.+|++.
T Consensus       534 LsihlqS  540 (1406)
T KOG1146|consen  534 LSIHLQS  540 (1406)
T ss_pred             HHHHHHH
Confidence            9999863

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=93.55  E-value=0.068  Score=25.45  Aligned_cols=10  Identities=20%  Similarity=0.617  Sum_probs=4.3

Q ss_pred             eeccccCccc
Q psy3507          83 YKCEYCAYSC   92 (134)
Q Consensus        83 ~~C~~C~~~f   92 (134)
                      ..|+.|+..|
T Consensus        26 vrC~~C~~~f   35 (37)
T PF13719_consen   26 VRCPKCGHVF   35 (37)
T ss_pred             EECCCCCcEe
Confidence            4444444433

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.92  E-value=0.082  Score=24.67  Aligned_cols=24  Identities=17%  Similarity=0.470  Sum_probs=11.8

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCC
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      |.|..||..+.- .+.+..|++|+.
T Consensus         3 ~~C~~CG~i~~g-~~~p~~CP~Cg~   26 (34)
T cd00729           3 WVCPVCGYIHEG-EEAPEKCPICGA   26 (34)
T ss_pred             EECCCCCCEeEC-CcCCCcCcCCCC
Confidence            556666655431 123445655554

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=92.80  E-value=0.084  Score=36.07  Aligned_cols=51  Identities=22%  Similarity=0.415  Sum_probs=35.7

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCC
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      .|.|..||....- ..+.+|+..=.+ ..|.|..|++.|.. .++..|..--+.
T Consensus         3 ~FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCITE   53 (276)
T KOG2186|consen    3 FFTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCITE   53 (276)
T ss_pred             EEehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcch
Confidence            4788888876654 445668775544 56889999998888 567777664443

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=92.56  E-value=0.11  Score=22.68  Aligned_cols=9  Identities=33%  Similarity=0.851  Sum_probs=4.6

Q ss_pred             eeCCCCCcc
Q psy3507          56 TCYACDYHT   64 (134)
Q Consensus        56 ~C~~C~~~f   64 (134)
                      .|+.||..|
T Consensus        16 ~Cp~CG~~F   24 (26)
T PF10571_consen   16 FCPHCGYDF   24 (26)
T ss_pred             cCCCCCCCC
Confidence            355555554

Several members are annotated as putative helicases.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=92.52  E-value=0.093  Score=25.71  Aligned_cols=25  Identities=20%  Similarity=0.509  Sum_probs=13.5

Q ss_pred             ccCCCCCCccc----CCCCcceeeCCCCC
Q psy3507          38 YHCKTCSTVSH----PNISYKYTCYACDY   62 (134)
Q Consensus        38 ~~C~~C~~~f~----~~~~~~~~C~~C~~   62 (134)
                      |.|..||..|.    -.....-.|+.|+.
T Consensus         6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~   34 (42)
T PF09723_consen    6 YRCEECGHEFEVLQSISEDDPVPCPECGS   34 (42)
T ss_pred             EEeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence            56666666665    11134455666654

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>KOG1146|consensus

Probab=92.42  E-value=0.038  Score=45.67  Aligned_cols=19  Identities=16%  Similarity=0.378  Sum_probs=12.4

Q ss_pred             cCcChhhhcCHHHHHHHHH
Q psy3507         113 CQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       113 C~~C~~~F~~~~~l~~H~~  131 (134)
                      |..|...|.....|+.||+
T Consensus      1331 c~~c~~~~~~~~alqihm~ 1349 (1406)
T KOG1146|consen 1331 CLACEVLLSGREALQIHMR 1349 (1406)
T ss_pred             chHHHhhcchhHHHHHHHH
Confidence            6666666666666666664

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=92.38  E-value=0.15  Score=21.85  Aligned_cols=8  Identities=25%  Similarity=1.011  Sum_probs=3.2

Q ss_pred             ceeeCCCC
Q psy3507          54 KYTCYACD   61 (134)
Q Consensus        54 ~~~C~~C~   61 (134)
                      .|.|+.||
T Consensus        16 ~f~CPnCG   23 (24)
T PF07754_consen   16 PFPCPNCG   23 (24)
T ss_pred             eEeCCCCC
Confidence            34444443

It is likely to bind zinc via its four well-conserved cysteine residues.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=92.36  E-value=0.11  Score=25.01  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=12.7

Q ss_pred             ccCCCCCCccc----CCCCcceeeCCCCC
Q psy3507          38 YHCKTCSTVSH----PNISYKYTCYACDY   62 (134)
Q Consensus        38 ~~C~~C~~~f~----~~~~~~~~C~~C~~   62 (134)
                      |.|..||..|.    ......-.|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~   34 (41)
T smart00834        6 YRCEDCGHTFEVLQKISDDPLATCPECGG   34 (41)
T ss_pred             EEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence            56666666655    11123345666654

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=92.28  E-value=0.11  Score=31.72  Aligned_cols=34  Identities=9%  Similarity=-0.131  Sum_probs=25.8

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCCccCChHHHH
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMK   71 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~~l~   71 (134)
                      ..|+.||++|.--+..|..|+.||..|.....++
T Consensus        10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~~~~~   43 (129)
T TIGR02300        10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPEEALK   43 (129)
T ss_pred             ccCCCcCccccccCCCCccCCCcCCccCcchhhc
Confidence            5688889888877777888888888876654433

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>KOG2907|consensus

Probab=91.96  E-value=0.13  Score=30.70  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             eecCcccccccccCCCCccccCCCCCCccc
Q psy3507          19 LATCIHCRLLLVPTAEELMYHCKTCSTVSH   48 (134)
Q Consensus        19 ~~~C~~C~~h~~~h~~~~~~~C~~C~~~f~   48 (134)
                      ..-|..|+..+..........|..|+..+.
T Consensus         7 ~~FC~~CG~ll~~~~~~~~~~C~~Ck~~~~   36 (116)
T KOG2907|consen    7 LDFCSDCGSLLEEPSAQSTVLCIRCKIEYP   36 (116)
T ss_pred             cchhhhhhhhcccccccCceEeccccccCC
Confidence            456777877666666666677888888776

>KOG2482|consensus

Probab=91.66  E-value=0.2  Score=35.86  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=55.8

Q ss_pred             ceeeCCCCCccCChHHHHHHHHH--hcCC---------------------------------------------------
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRK--HTGE---------------------------------------------------   80 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~--h~~~---------------------------------------------------   80 (134)
                      .+.|-.|.+.|..+..|+.||+.  |..-                                                   
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            48899999999999999999973  3210                                                   


Q ss_pred             -Cc--eeccccCccccCchhHHHHhhh-cCC--------------------------CCCeecCcChhhhcCHHHHHHHH
Q psy3507          81 -KP--YKCEYCAYSCTQSSALKIHERK-HTG--------------------------DKPYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus        81 -~~--~~C~~C~~~f~~~~~l~~H~~~-h~~--------------------------~~~~~C~~C~~~F~~~~~l~~H~  130 (134)
                       .+  ..|-.|.....+...|..|+.. |.-                          ...-.|-.|.-.|.....|..||
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm  354 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHM  354 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhc
Confidence             11  3677788877778888888774 310                          11235777888888888888887


Q ss_pred             Hh
Q psy3507         131 QS  132 (134)
Q Consensus       131 ~~  132 (134)
                      ..
T Consensus       355 ~e  356 (423)
T KOG2482|consen  355 VE  356 (423)
T ss_pred             cc
Confidence            53

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=91.47  E-value=0.12  Score=32.93  Aligned_cols=13  Identities=23%  Similarity=0.391  Sum_probs=6.7

Q ss_pred             eeeCCCCCccCCh
Q psy3507          55 YTCYACDYHTLMS   67 (134)
Q Consensus        55 ~~C~~C~~~f~~~   67 (134)
                      ++|+.||.+|.+.
T Consensus        29 ~~c~~c~~~f~~~   41 (154)
T PRK00464         29 RECLACGKRFTTF   41 (154)
T ss_pred             eeccccCCcceEe
Confidence            5555555555443

>TIGR00622 ssl1 transcription factor ssl1

Probab=91.20  E-value=0.42  Score=28.73  Aligned_cols=49  Identities=16%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             eeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcC
Q psy3507          56 TCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        56 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      .|--|...|........-  .-.....|+|+.|...|--.-++..|...|.
T Consensus        57 ~C~~C~~~f~~~~~~~~~--~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPFD--ELKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             cccCcCCCCCCccccccc--ccccccceeCCCCCCccccccchhhhhhccC
Confidence            477888877654311100  0122346888888888888888888865553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2231|consensus

Probab=91.13  E-value=0.29  Score=38.23  Aligned_cols=71  Identities=24%  Similarity=0.525  Sum_probs=47.7

Q ss_pred             eeeCCCCCccCChHHHHHHHHHhcCCCceeccccC------ccccCchhHHHHhhhcCCCCCeecC--cCh-hhhcCHHH
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA------YSCTQSSALKIHERKHTGDKPYICQ--QCR-DTFSSLYL  125 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~------~~f~~~~~l~~H~~~h~~~~~~~C~--~C~-~~F~~~~~  125 (134)
                      -.|..|...|.....|..|++.++    |.|..|+      .-|.....|..|.+.++    |.|+  .|. +.|.....
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~  254 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFE  254 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehhH
Confidence            568899999999999999888654    5666663      45667788888877544    5666  453 34444445


Q ss_pred             HHHHHHhc
Q psy3507         126 FRNRLQSH  133 (134)
Q Consensus       126 l~~H~~~H  133 (134)
                      +..+++.|
T Consensus       255 ~ei~lk~~  262 (669)
T KOG2231|consen  255 LEIELKAH  262 (669)
T ss_pred             HHHHHHhh
Confidence            55665543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.06  E-value=0.079  Score=35.62  Aligned_cols=12  Identities=17%  Similarity=0.642  Sum_probs=8.9

Q ss_pred             eecCcChhhhcC
Q psy3507         111 YICQQCRDTFSS  122 (134)
Q Consensus       111 ~~C~~C~~~F~~  122 (134)
                      ..|+.||.+|..
T Consensus        49 ~vCP~CgyA~~~   60 (214)
T PF09986_consen   49 WVCPHCGYAAFE   60 (214)
T ss_pred             EECCCCCCcccc
Confidence            478888887754

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=90.74  E-value=0.16  Score=23.00  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=9.6

Q ss_pred             cCCCCCCcccCCCCcceeeCCCCC
Q psy3507          39 HCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        39 ~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      +|+.|+..+.......+.|+.|+.
T Consensus         4 ~Cp~C~se~~y~D~~~~vCp~C~~   27 (30)
T PF08274_consen    4 KCPLCGSEYTYEDGELLVCPECGH   27 (30)
T ss_dssp             --TTT-----EE-SSSEEETTTTE
T ss_pred             CCCCCCCcceeccCCEEeCCcccc
Confidence            466666666655555566666654

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=90.63  E-value=0.18  Score=25.73  Aligned_cols=11  Identities=27%  Similarity=0.842  Sum_probs=5.4

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      |.|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (52)
T TIGR02605         6 YRCTACGHRFE   16 (52)
T ss_pred             EEeCCCCCEeE
Confidence            44555555444

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.39  E-value=0.27  Score=33.11  Aligned_cols=14  Identities=14%  Similarity=0.406  Sum_probs=10.1

Q ss_pred             CccccCCCCCCccc
Q psy3507          35 ELMYHCKTCSTVSH   48 (134)
Q Consensus        35 ~~~~~C~~C~~~f~   48 (134)
                      ++.+.|+.|+..|.
T Consensus         3 ~k~~~CPvC~~~F~   16 (214)
T PF09986_consen    3 DKKITCPVCGKEFK   16 (214)
T ss_pred             CCceECCCCCCeee
Confidence            35577888888777

>KOG4173|consensus

Probab=90.15  E-value=0.11  Score=34.42  Aligned_cols=73  Identities=21%  Similarity=0.489  Sum_probs=40.7

Q ss_pred             eeeCC--CCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhh-c---------CCCCCeecCc--Chhhh
Q psy3507          55 YTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-H---------TGDKPYICQQ--CRDTF  120 (134)
Q Consensus        55 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C~~--C~~~F  120 (134)
                      +.|++  |...|........|-.+-++   -.|..|.+.|.+...|..|+.. |         .|..-|+|-+  |+..|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            44554  44556555555555443222   2566677777766666666542 2         2333366643  77777


Q ss_pred             cCHHHHHHHH
Q psy3507         121 SSLYLFRNRL  130 (134)
Q Consensus       121 ~~~~~l~~H~  130 (134)
                      .+...-..|+
T Consensus       157 kT~r~RkdH~  166 (253)
T KOG4173|consen  157 KTSRDRKDHM  166 (253)
T ss_pred             hhhhhhhhHH
Confidence            6666666664

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.09  E-value=0.31  Score=23.94  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=10.8

Q ss_pred             CCeecCcChhhhcCH----HHHHHHH
Q psy3507         109 KPYICQQCRDTFSSL----YLFRNRL  130 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~----~~l~~H~  130 (134)
                      ....|..|++.+...    +.|.+|+
T Consensus        15 ~~a~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   15 KKAKCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             S-EEETTTTEE-----SSTHHHHHHH
T ss_pred             CeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence            345666666665543    5666666

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.96  E-value=0.19  Score=26.10  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=24.7

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHh
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      ..++..+.|+-|+..|....++.+|...-
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKa   40 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKA   40 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHH
Confidence            45677799999999999999999998743

>PF14353 CpXC: CpXC protein

Probab=89.63  E-value=0.28  Score=30.08  Aligned_cols=10  Identities=20%  Similarity=0.587  Sum_probs=5.8

Q ss_pred             cCCCCCCccc
Q psy3507          39 HCKTCSTVSH   48 (134)
Q Consensus        39 ~C~~C~~~f~   48 (134)
                      +|+.|+..|.
T Consensus         3 tCP~C~~~~~   12 (128)
T PF14353_consen    3 TCPHCGHEFE   12 (128)
T ss_pred             CCCCCCCeeE
Confidence            4666666555

>PHA00626 hypothetical protein

Probab=89.51  E-value=0.42  Score=24.87  Aligned_cols=11  Identities=36%  Similarity=1.198  Sum_probs=5.2

Q ss_pred             ceeeCCCCCcc
Q psy3507          54 KYTCYACDYHT   64 (134)
Q Consensus        54 ~~~C~~C~~~f   64 (134)
                      .|+|+.|+..|
T Consensus        23 rYkCkdCGY~f   33 (59)
T PHA00626         23 DYVCCDCGYND   33 (59)
T ss_pred             ceEcCCCCCee
Confidence            34444444444

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=89.31  E-value=0.4  Score=33.95  Aligned_cols=91  Identities=22%  Similarity=0.413  Sum_probs=55.8

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCCccCChHHHHHHHHHhc-----CCC-------ceeccccCccccCchhHHHHhhhc
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHT-----GEK-------PYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-----~~~-------~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      |.|+.|....   -..|..|+.|+-.......|.+-..--.     .++       .-.|-.|...|.....-..-  .-
T Consensus       309 y~CP~CktkV---CsLPi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~--~~  383 (421)
T COG5151         309 YECPVCKTKV---CSLPISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFD--ES  383 (421)
T ss_pred             eeCCccccee---ecCCccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCccc--cc
Confidence            8888887653   4567889999877666666654321100     111       12377777777664321111  11


Q ss_pred             CCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         106 TGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       106 ~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +..-.|+|+.|...|-.--+.-.|...|
T Consensus       384 ~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh  411 (421)
T COG5151         384 TSSGRYQCELCKSTFCSDCDVFIHETLH  411 (421)
T ss_pred             ccccceechhhhhhhhhhhHHHHHHHHh
Confidence            2234599999999998887777777665

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=88.96  E-value=0.28  Score=31.60  Aligned_cols=24  Identities=17%  Similarity=0.445  Sum_probs=15.4

Q ss_pred             cccCCCCCCcccCCCCcceeeCCCCC
Q psy3507          37 MYHCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      .|.|+.||..+.  ++.|-+||+|+-
T Consensus       134 ~~vC~vCGy~~~--ge~P~~CPiCga  157 (166)
T COG1592         134 VWVCPVCGYTHE--GEAPEVCPICGA  157 (166)
T ss_pred             EEEcCCCCCccc--CCCCCcCCCCCC
Confidence            477777776643  356667777763

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=88.91  E-value=0.52  Score=30.16  Aligned_cols=31  Identities=16%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             CCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhh
Q psy3507          80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDT  119 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  119 (134)
                      ..-|.|+.|+..|+...++.         .-|.|+.||..
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~  137 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM  137 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence            34577887877777666653         25788888764

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.41  E-value=0.48  Score=29.91  Aligned_cols=36  Identities=17%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC   92 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   92 (134)
                      .-|.|+.|+..|.....+..   ... ...|.|+.||...
T Consensus        98 ~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l  133 (147)
T smart00531       98 AYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEEL  133 (147)
T ss_pred             cEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCEE
Confidence            34667777666665443321   011 2337777777654

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=87.78  E-value=0.34  Score=24.42  Aligned_cols=11  Identities=36%  Similarity=0.963  Sum_probs=6.5

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      |+|..||.++.
T Consensus         2 y~C~~CgyvYd   12 (47)
T PF00301_consen    2 YQCPVCGYVYD   12 (47)
T ss_dssp             EEETTTSBEEE
T ss_pred             cCCCCCCEEEc
Confidence            55666665555

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>smart00614 ZnF_BED BED zinc finger

Probab=87.08  E-value=0.38  Score=24.36  Aligned_cols=21  Identities=24%  Similarity=0.448  Sum_probs=12.7

Q ss_pred             eecCcChhhhcCH-----HHHHHHHH
Q psy3507         111 YICQQCRDTFSSL-----YLFRNRLQ  131 (134)
Q Consensus       111 ~~C~~C~~~F~~~-----~~l~~H~~  131 (134)
                      -.|..|++.+...     +.|.+|++
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            4566666655443     56777776

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=86.82  E-value=0.42  Score=24.41  Aligned_cols=11  Identities=27%  Similarity=1.011  Sum_probs=7.2

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      |+|..||..|.
T Consensus         2 y~C~~CgyiYd   12 (50)
T cd00730           2 YECRICGYIYD   12 (50)
T ss_pred             cCCCCCCeEEC
Confidence            56666666665

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=86.70  E-value=0.48  Score=24.05  Aligned_cols=28  Identities=18%  Similarity=0.487  Sum_probs=15.9

Q ss_pred             ccccCCCCCCccc-CCCCcceeeCCCCCc
Q psy3507          36 LMYHCKTCSTVSH-PNISYKYTCYACDYH   63 (134)
Q Consensus        36 ~~~~C~~C~~~f~-~~~~~~~~C~~C~~~   63 (134)
                      ..|.|..||+.|. ........|+.||..
T Consensus         5 ~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~r   33 (49)
T COG1996           5 MEYKCARCGREVELDQETRGIRCPYCGSR   33 (49)
T ss_pred             EEEEhhhcCCeeehhhccCceeCCCCCcE
Confidence            3466666666665 233344666666643

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=86.67  E-value=0.5  Score=37.51  Aligned_cols=40  Identities=20%  Similarity=0.407  Sum_probs=29.8

Q ss_pred             ecCcccccccccCCCCccccCCCCCCcccCCCCcceeeCCCCCc
Q psy3507          20 ATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYH   63 (134)
Q Consensus        20 ~~C~~C~~h~~~h~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~~   63 (134)
                      .+|..|..-+..|.......|..||..    ...+..|+.||..
T Consensus       445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~----~~~p~~Cp~Cgs~  484 (730)
T COG1198         445 AECPNCDSPLTLHKATGQLRCHYCGYQ----EPIPQSCPECGSE  484 (730)
T ss_pred             ccCCCCCcceEEecCCCeeEeCCCCCC----CCCCCCCCCCCCC
Confidence            456667777777777778888888875    4567788888865

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=86.65  E-value=0.39  Score=27.40  Aligned_cols=30  Identities=13%  Similarity=0.244  Sum_probs=16.2

Q ss_pred             cccCCCCCCccc-CCCCcceeeCCCCCccCC
Q psy3507          37 MYHCKTCSTVSH-PNISYKYTCYACDYHTLM   66 (134)
Q Consensus        37 ~~~C~~C~~~f~-~~~~~~~~C~~C~~~f~~   66 (134)
                      .|.|+.|++.-. ......+.|..|+..|..
T Consensus        35 ~~~Cp~C~~~~VkR~a~GIW~C~kCg~~fAG   65 (89)
T COG1997          35 KHVCPFCGRTTVKRIATGIWKCRKCGAKFAG   65 (89)
T ss_pred             CCcCCCCCCcceeeeccCeEEcCCCCCeecc
Confidence            366666665522 233334666666666654

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=86.40  E-value=0.62  Score=23.76  Aligned_cols=24  Identities=21%  Similarity=0.605  Sum_probs=10.1

Q ss_pred             CCCCCCcccCCCCcceeeCCCCCc
Q psy3507          40 CKTCSTVSHPNISYKYTCYACDYH   63 (134)
Q Consensus        40 C~~C~~~f~~~~~~~~~C~~C~~~   63 (134)
                      |+.||..|.......+.|..|+..
T Consensus        23 CP~Cg~~~m~~~~~r~~C~~Cgyt   46 (50)
T PRK00432         23 CPRCGSGFMAEHLDRWHCGKCGYT   46 (50)
T ss_pred             CcCCCcchheccCCcEECCCcCCE
Confidence            455544333222234445555443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=86.21  E-value=0.61  Score=29.86  Aligned_cols=32  Identities=16%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccc
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC   92 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   92 (134)
                      ..-|.|+.|+..|+...++.         .-|.|+.||...
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML  138 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence            34577888887777777664         147888888643

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.70  E-value=0.83  Score=29.88  Aligned_cols=30  Identities=23%  Similarity=0.532  Sum_probs=17.6

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCCCCeecCcChhh
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDT  119 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  119 (134)
                      .-|.|+.|+..|+...++.         .-|.|+.||..
T Consensus       116 ~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~  145 (178)
T PRK06266        116 MFFFCPNCHIRFTFDEAME---------YGFRCPQCGEM  145 (178)
T ss_pred             CEEECCCCCcEEeHHHHhh---------cCCcCCCCCCC
Confidence            3466777776666554432         24677777654

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=85.68  E-value=0.56  Score=29.10  Aligned_cols=23  Identities=26%  Similarity=0.723  Sum_probs=15.7

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +....|-+||+.|..   |.+|+++|
T Consensus        70 ~d~i~clecGk~~k~---LkrHL~~~   92 (132)
T PF05443_consen   70 PDYIICLECGKKFKT---LKRHLRTH   92 (132)
T ss_dssp             SS-EE-TBT--EESB---HHHHHHHT
T ss_pred             cCeeEEccCCcccch---HHHHHHHc
Confidence            344789999999987   69999888

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>TIGR00595 priA primosomal protein N'

Probab=85.60  E-value=0.61  Score=35.49  Aligned_cols=39  Identities=23%  Similarity=0.488  Sum_probs=30.6

Q ss_pred             cCcccccccccCCCCccccCCCCCCcccCCCCcceeeCCCCCc
Q psy3507          21 TCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYH   63 (134)
Q Consensus        21 ~C~~C~~h~~~h~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~~   63 (134)
                      .|..|...+..|.......|..||...    ..+..|+.|+..
T Consensus       224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~----~~~~~Cp~C~s~  262 (505)
T TIGR00595       224 CCPNCDVSLTYHKKEGKLRCHYCGYQE----PIPKTCPQCGSE  262 (505)
T ss_pred             CCCCCCCceEEecCCCeEEcCCCcCcC----CCCCCCCCCCCC
Confidence            577777788888888889999999763    346789999864

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2785|consensus

Probab=85.52  E-value=1  Score=32.81  Aligned_cols=78  Identities=17%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             ceeeCCCCCccCChHHHHHHHHH--hcC---CCceec-cccCccccCchhHHHH-hh--hcCCCCCeecCcChhhhcCHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRK--HTG---EKPYKC-EYCAYSCTQSSALKIH-ER--KHTGDKPYICQQCRDTFSSLY  124 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~--h~~---~~~~~C-~~C~~~f~~~~~l~~H-~~--~h~~~~~~~C~~C~~~F~~~~  124 (134)
                      .|.|..|...|.+....+.|+++  |.-   .+...= ++-...|..+..-..- ..  .-.++-++.|..|.+.|.+..
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~   82 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK   82 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence            47899999999999888889873  421   000000 1111222221111000 00  122344577777777777777


Q ss_pred             HHHHHHH
Q psy3507         125 LFRNRLQ  131 (134)
Q Consensus       125 ~l~~H~~  131 (134)
                      ....|+.
T Consensus        83 a~~~hl~   89 (390)
T KOG2785|consen   83 AHENHLK   89 (390)
T ss_pred             hHHHHHH
Confidence            7777764

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=85.48  E-value=0.88  Score=23.72  Aligned_cols=40  Identities=20%  Similarity=0.513  Sum_probs=22.2

Q ss_pred             Cceeccc--cCccccCchhHHHHhhhcCCCCCeecCc----Chhhhc
Q psy3507          81 KPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ----CRDTFS  121 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~F~  121 (134)
                      .+..|+.  |...+. +..|..|+..--..++..|+.    |+..+.
T Consensus         8 ~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~   53 (60)
T PF02176_consen    8 RPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVP   53 (60)
T ss_dssp             SEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEE
T ss_pred             CEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccc
Confidence            4566766  444343 456778877655566777887    777665

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.21  E-value=0.56  Score=30.65  Aligned_cols=31  Identities=19%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC   92 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   92 (134)
                      .-|.|+.|+..|....++.         .-|.|+.||...
T Consensus       116 ~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L  146 (178)
T PRK06266        116 MFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML  146 (178)
T ss_pred             CEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence            3467777777766665542         247777777643

>COG1773 Rubredoxin [Energy production and conversion]

Probab=84.91  E-value=0.58  Score=24.35  Aligned_cols=12  Identities=25%  Similarity=0.736  Sum_probs=9.1

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|+|..||..|.
T Consensus         3 ~~~C~~CG~vYd   14 (55)
T COG1773           3 RWRCSVCGYVYD   14 (55)
T ss_pred             ceEecCCceEec
Confidence            477888888776

>smart00531 TFIIE Transcription initiation factor IIE

Probab=84.81  E-value=2.4  Score=26.71  Aligned_cols=38  Identities=24%  Similarity=0.552  Sum_probs=25.7

Q ss_pred             CCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhh
Q psy3507          79 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF  120 (134)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F  120 (134)
                      +...|.|+.|+..|.....+..   ... ...|.|+.||...
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCEE
Confidence            3456999999999886544332   011 3349999999765

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=83.73  E-value=0.8  Score=27.25  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             cCCCCCCcccCCCCcceeeCCCCCccCChH
Q psy3507          39 HCKTCSTVSHPNISYKYTCYACDYHTLMSE   68 (134)
Q Consensus        39 ~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~   68 (134)
                      .|+.|+..|.......|.|+.|+..+....
T Consensus         4 ~CP~C~seytY~dg~~~iCpeC~~EW~~~~   33 (109)
T TIGR00686         4 PCPKCNSEYTYHDGTQLICPSCLYEWNENE   33 (109)
T ss_pred             cCCcCCCcceEecCCeeECccccccccccc
Confidence            588999988877777899999998876553

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=83.49  E-value=0.78  Score=28.58  Aligned_cols=11  Identities=18%  Similarity=0.676  Sum_probs=5.8

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      +.|..||..|.
T Consensus        71 ~~C~~CG~~~~   81 (135)
T PRK03824         71 LKCRNCGNEWS   81 (135)
T ss_pred             EECCCCCCEEe
Confidence            55555555544

>KOG4167|consensus

Probab=83.38  E-value=0.37  Score=37.89  Aligned_cols=24  Identities=17%  Similarity=0.524  Sum_probs=22.3

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhc
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      -|.|..|+|.|..-.++..||++|
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~H  815 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTH  815 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHH
Confidence            399999999999999999999998

>KOG2807|consensus

Probab=83.38  E-value=2.1  Score=30.63  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=27.4

Q ss_pred             cccCCCCCCcccCCCCcceeeCCCCCccCChHHHHHH
Q psy3507          37 MYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKH   73 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~~l~~H   73 (134)
                      -|.|+.|+...   -+.|-+|+.|+-.......|.+-
T Consensus       276 Gy~CP~Ckakv---CsLP~eCpiC~ltLVss~hLARS  309 (378)
T KOG2807|consen  276 GYFCPQCKAKV---CSLPIECPICSLTLVSSPHLARS  309 (378)
T ss_pred             ceeCCcccCee---ecCCccCCccceeEecchHHHHH
Confidence            38899998764   55788999999998888888754

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=83.26  E-value=0.34  Score=26.77  Aligned_cols=41  Identities=15%  Similarity=0.292  Sum_probs=20.1

Q ss_pred             eeeCCCCCccCChHHHHHHHHHhcCCCceecc--ccCccccCchh
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSA   97 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~   97 (134)
                      +.|+.|+........-....  -..+..++|.  .||..|.....
T Consensus         2 m~CP~Cg~~a~irtSr~~s~--~~~~~Y~qC~N~eCg~tF~t~es   44 (72)
T PRK09678          2 FHCPLCQHAAHARTSRYITD--TTKERYHQCQNVNCSATFITYES   44 (72)
T ss_pred             ccCCCCCCccEEEEChhcCh--hhheeeeecCCCCCCCEEEEEEE
Confidence            45777775543222221111  1233456676  67777766543

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=83.00  E-value=1.3  Score=19.17  Aligned_cols=19  Identities=21%  Similarity=0.419  Sum_probs=10.6

Q ss_pred             ecCcChhhhcCHHHHHHHHH
Q psy3507         112 ICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       112 ~C~~C~~~F~~~~~l~~H~~  131 (134)
                      .|+.|++.+ ....+.+|+.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            466666665 4455555553

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PRK10220 hypothetical protein; Provisional

Probab=82.90  E-value=1.1  Score=26.64  Aligned_cols=30  Identities=23%  Similarity=0.407  Sum_probs=24.3

Q ss_pred             cCCCCCCcccCCCCcceeeCCCCCccCChH
Q psy3507          39 HCKTCSTVSHPNISYKYTCYACDYHTLMSE   68 (134)
Q Consensus        39 ~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~   68 (134)
                      .|+.|+..|.......|.|+.|+..+...+
T Consensus         5 ~CP~C~seytY~d~~~~vCpeC~hEW~~~~   34 (111)
T PRK10220          5 HCPKCNSEYTYEDNGMYICPECAHEWNDAE   34 (111)
T ss_pred             cCCCCCCcceEcCCCeEECCcccCcCCccc
Confidence            588999888877777899999998776654

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=82.90  E-value=1.1  Score=23.27  Aligned_cols=11  Identities=18%  Similarity=0.776  Sum_probs=4.9

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      ++|+.||..+.
T Consensus         3 ~~CP~CG~~ie   13 (54)
T TIGR01206         3 FECPDCGAEIE   13 (54)
T ss_pred             cCCCCCCCEEe
Confidence            34444444443

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>KOG2186|consensus

Probab=82.85  E-value=0.87  Score=31.32  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=11.4

Q ss_pred             ceeeCCCCCccCChHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~   75 (134)
                      .|.|-.|++.|.. ..+..|..
T Consensus        29 ~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen   29 YFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             eeEEeeccccccc-chhhhhhh
Confidence            3556666666655 44455544

>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.80  E-value=0.86  Score=27.19  Aligned_cols=28  Identities=0%  Similarity=-0.441  Sum_probs=22.7

Q ss_pred             cCCCCCCcccCCCCcceeeCCCCCccCC
Q psy3507          39 HCKTCSTVSHPNISYKYTCYACDYHTLM   66 (134)
Q Consensus        39 ~C~~C~~~f~~~~~~~~~C~~C~~~f~~   66 (134)
                      .|+.||+.|.--...|..|++||++|..
T Consensus        11 idPetg~KFYDLNrdPiVsPytG~s~P~   38 (129)
T COG4530          11 IDPETGKKFYDLNRDPIVSPYTGKSYPR   38 (129)
T ss_pred             cCccccchhhccCCCccccCcccccchH
Confidence            4788888888777788889999988843

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.86  E-value=1.3  Score=21.57  Aligned_cols=8  Identities=25%  Similarity=0.820  Sum_probs=3.3

Q ss_pred             eeeCCCCC
Q psy3507          55 YTCYACDY   62 (134)
Q Consensus        55 ~~C~~C~~   62 (134)
                      +.|..||.
T Consensus        20 ~vC~~CG~   27 (43)
T PF08271_consen   20 LVCPNCGL   27 (43)
T ss_dssp             EEETTT-B
T ss_pred             EECCCCCC
Confidence            44555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF14369 zf-RING_3: zinc-finger

Probab=81.71  E-value=1.4  Score=20.62  Aligned_cols=8  Identities=25%  Similarity=0.617  Sum_probs=4.4

Q ss_pred             CCCCCCcc
Q psy3507          40 CKTCSTVS   47 (134)
Q Consensus        40 C~~C~~~f   47 (134)
                      |+.|+..|
T Consensus        24 CP~C~~gF   31 (35)
T PF14369_consen   24 CPRCHGGF   31 (35)
T ss_pred             CcCCCCcE
Confidence            55555544

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=81.56  E-value=1.2  Score=30.80  Aligned_cols=88  Identities=19%  Similarity=0.336  Sum_probs=46.8

Q ss_pred             cCCCCCCcccCCCCcceeeCCCCCccCChHHHHHHHHH--hcCCCceeccccCccccCchh-------HHHHhhh----c
Q psy3507          39 HCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRK--HTGEKPYKCEYCAYSCTQSSA-------LKIHERK----H  105 (134)
Q Consensus        39 ~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~-------l~~H~~~----h  105 (134)
                      .|-+|.+..-..+.+.|.|..|....-....+ .|+..  -.....|+|..|++. .+.+-       -..|.+.    .
T Consensus       127 ~C~EC~R~vw~hGGrif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNrl-Gq~sCLRCK~cfCddHvrrKg~ky  204 (314)
T PF06524_consen  127 VCIECERGVWDHGGRIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNRL-GQYSCLRCKICFCDDHVRRKGFKY  204 (314)
T ss_pred             EeeeeecccccCCCeEEEeecCCCeeeccchh-hhhhhhhhhhcccccccccccc-cchhhhheeeeehhhhhhhccccc
Confidence            45556555556667788888887654443333 34431  222344677666642 11111       2244432    2


Q ss_pred             CCCCCeecCcChhhhcCHHHHHH
Q psy3507         106 TGDKPYICQQCRDTFSSLYLFRN  128 (134)
Q Consensus       106 ~~~~~~~C~~C~~~F~~~~~l~~  128 (134)
                      ...+++.|+.||..-.....|..
T Consensus       205 ~k~k~~PCPKCg~et~eTkdLSm  227 (314)
T PF06524_consen  205 EKGKPIPCPKCGYETQETKDLSM  227 (314)
T ss_pred             ccCCCCCCCCCCCccccccccee
Confidence            23467889999876555444443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=81.21  E-value=1.8  Score=34.55  Aligned_cols=8  Identities=25%  Similarity=1.057  Sum_probs=4.4

Q ss_pred             cCCCCCCc
Q psy3507          39 HCKTCSTV   46 (134)
Q Consensus        39 ~C~~C~~~   46 (134)
                      .|..||..
T Consensus       437 ~C~~Cg~v  444 (730)
T COG1198         437 LCRDCGYI  444 (730)
T ss_pred             ecccCCCc
Confidence            45556554

>PRK03681 hypA hydrogenase nickel incorporation protein; Validated

Probab=81.07  E-value=0.97  Score=27.28  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=16.2

Q ss_pred             ccccCCCCCCcccCCCCcceeeCCCCC
Q psy3507          36 LMYHCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        36 ~~~~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      -...|..||..|.......+.|+.||.
T Consensus        69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs   95 (114)
T PRK03681         69 AECWCETCQQYVTLLTQRVRRCPQCHG   95 (114)
T ss_pred             cEEEcccCCCeeecCCccCCcCcCcCC
Confidence            346677777766544333356777774

>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2

Probab=80.97  E-value=0.39  Score=22.69  Aligned_cols=10  Identities=30%  Similarity=0.923  Sum_probs=5.0

Q ss_pred             cCCCCCCccc
Q psy3507          39 HCKTCSTVSH   48 (134)
Q Consensus        39 ~C~~C~~~f~   48 (134)
                      .|+.||++|.
T Consensus         3 ~C~~Cg~~Yh   12 (36)
T PF05191_consen    3 ICPKCGRIYH   12 (36)
T ss_dssp             EETTTTEEEE
T ss_pred             CcCCCCCccc
Confidence            3555555554

7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=80.11  E-value=0.85  Score=28.26  Aligned_cols=20  Identities=30%  Similarity=0.629  Sum_probs=17.1

Q ss_pred             eecCcChhhhcCHHHHHHHHHhc
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      ..|-++|+.|.+   |++|+.+|
T Consensus        77 IicLEDGkkfKS---LKRHL~t~   96 (148)
T COG4957          77 IICLEDGKKFKS---LKRHLTTH   96 (148)
T ss_pred             EEEeccCcchHH---HHHHHhcc
Confidence            679999999875   89999886

>PRK04023 DNA polymerase II large subunit; Validated

Probab=80.09  E-value=2.5  Score=34.90  Aligned_cols=8  Identities=38%  Similarity=0.899  Sum_probs=3.9

Q ss_pred             eeccccCc
Q psy3507          83 YKCEYCAY   90 (134)
Q Consensus        83 ~~C~~C~~   90 (134)
                      +.|+.|+.
T Consensus       664 y~CPKCG~  671 (1121)
T PRK04023        664 DECEKCGR  671 (1121)
T ss_pred             CcCCCCCC
Confidence            34555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		6e-14
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-13
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-09
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-09
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-09
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-09
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-09
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-09
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		4e-09
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		5e-09
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		6e-09
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		6e-09
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		7e-09
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-08
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-08
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-08
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		5e-08
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		6e-08
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-07
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		3e-07
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		9e-07
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		5e-06
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		6e-06
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		7e-06
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		1e-05
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		4e-05
2yta_A	41	Solution Structure Of C2h2 Type Zinc Finger Domain		7e-05
2en1_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2ysv_A	42	Solution Structure Of C2h2 Type Zinc Finger Domain		4e-04
2ytr_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-04
2yth_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           Y C  C       +D+ +H R HTGEKPYKC  C  S +Q + L+ H+R HTG+KPY C 
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 115 QCRDTFSSLYLFRNRLQSH 133
           +C  +FS L   R   ++H
Sbjct: 110 ECGKSFSQLAHLRAHQRTH 128

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           Y C  C      S +++KH R HTGEKPYKC  C  S +QSS L+ H+R HTG+KPY C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 115 QCRDTFS-SLYLFRNR 129
           +C  +FS S +L R++
Sbjct: 65  ECGKSFSRSDHLSRHQ 80

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD       ++  H+R HTG+KP++C  C  + +Q ++L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 119 TFSSLY 124
            F++L+
Sbjct: 71  KFATLH 76

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           S  +K H+R HTGEKPY C++  C +   +S  L  H RKHTG +P+ CQ+C   FS
Sbjct: 21  SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 77

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 52  SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
           S  + C  C       + +K HMR HTG KPYKC+ C Y+   SS+L  H R H+ ++P+
Sbjct: 6   SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 112 ICQQCRDTFSSLYLFRNRLQ 131
            CQ C       Y  RN  Q
Sbjct: 66  KCQIC------PYASRNSSQ 79

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           S  +K H+R HTGEKPY C++  C +   +S  L  H RKHTG +P+ CQ+C   FS
Sbjct: 20  SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD     S D+ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
            F+
Sbjct: 71  KFA 73

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD       ++  H+R HTG+KP++C  C  + +Q + L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 119 TFSSLY 124
            F++L+
Sbjct: 71  KFATLH 76

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 44  STVSHPNISYKYTCYACDYHT-----LMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSS 96
           S  S P++  +   Y CDY         S  +K H+R HTGEKPYKC  E C +   +S 
Sbjct: 3   SGSSGPDLEKRRIHY-CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 97  ALKIHERKHTGDKPYICQQCRDTFS 121
            L  H RKHTG KP+ C  C  +FS
Sbjct: 62  ELTRHYRKHTGAKPFQCGVCNRSFS 86

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 10  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 119 TFS 121
            F+
Sbjct: 70  KFA 72

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
            F+
Sbjct: 71  KFA 73

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
            F+
Sbjct: 71  KFA 73

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQC 116
            C+        ++ H RKHTGEKPY+C++  C    ++S  LK H+R+HTG KP+ C+ C
Sbjct: 13  GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 117 RDTFS 121
           +  FS
Sbjct: 73  QRKFS 77

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD     S ++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
            F+
Sbjct: 71  KFA 73

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD     S ++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
            F+
Sbjct: 71  KFA 73

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
           +CD     S  + +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11  SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
            F+
Sbjct: 71  KFA 73

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 31/53 (58%)
Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
           Y C  C        DMKKH   HTGEKP+KC+ C  + +QSS L  H RKHTG
Sbjct: 30  YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 54  KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
           +Y C  C      S D+ KH R HTGEKPYKC+ C  +  Q S L  H R HTG  P
Sbjct: 18  RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 73  HMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSS 122
           HMR+HTGEKP+KC  E C  S ++   LK H R HTG+KPY+C+   C   FS+
Sbjct: 58  HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYI 112
           + C  C    + S  +K+H   HTGEKP++C  E C    +    L+ H R HTGD+PY+
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 113 C--QQCRDTFSSLYLFRNRLQSHG 134
           C    C   F+     ++ + +H 
Sbjct: 95  CPFDGCNKKFAQSTNLKSHILTHA 118

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 73  HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 114
           H+R HTGEKP+ C +  C     +S  LKIH+R HTG+KP+ C+
Sbjct: 81  HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 70  MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFS 121
           + +H   H+GEKPY C  C     +   +  H R H G   KPYICQ C   FS
Sbjct: 23  LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
           Y C  C      S  + +H R HTGEKPYKC  C  + +Q+S L  H+R HT
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
           H+R HTGEKPYKCE+C Y+  Q ++L+ H  +H
Sbjct: 23  HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 54  KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
           ++ C  C  H   S ++  H R HT E+PY C+ C  +  +   L+ H   H+ +KP+ C
Sbjct: 17  EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 114 QQCRDTF 120
           Q+C   F
Sbjct: 77  QECGKGF 83

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
           Y C  C        ++  H   HTGEKPY+C  C     + + LK H R H+G+KP
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 59  ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
           +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HT
Sbjct: 26  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc Finger Protein 32 Length = 41

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 78  TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
           +GEKPY+C+ C  S +Q  +L +HER HTG  P
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38

>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563- 595) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 80  EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
           EKP+KCE C    TQ+S L  H+R HTG+KP
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40

>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In Zinc Finger Protein 473 Length = 42

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 78  TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
           +GEKPY C+ C  + TQSS L IH R HTG+
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36

>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 760- 792) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 80  EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
           EKPYKC  C  + +Q+S L  H+R HTG+KP
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40

>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479- 511) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 80  EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
           EKP++CE C    TQ+S L  H+R HTG+KP
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 81  KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           KP++C  C  + ++S  L  H R HTG+KP+ C  C   F+
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-20
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-19
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-20
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-14
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-19
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-17
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-18
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-18
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-18
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	6e-10
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-18
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-18
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-17
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-13
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-17
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-15
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-10
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-17
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-11
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-16
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-16
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-17
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-11
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-16
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-16
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-15
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-16
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-16
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-15
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-15
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-16
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-13
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-16
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-14
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-16
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-13
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-14
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-15
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-10
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	6e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-12
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-12
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-15
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-14
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-14
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-14
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-14
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-14
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-14
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-14
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-14
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-14
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-14
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-14
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-14
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-14
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-14
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-14
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-14
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	5e-14
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-14
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-14
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-14
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-14
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-14
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	6e-14
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-14
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-14
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-14
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-14
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	7e-14
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-14
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	8e-14
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-14
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-14
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-14
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-14
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	9e-14
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-05
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-14
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	9e-14
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-13
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-13
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-13
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	9e-12
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-13
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-13
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-13
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-13
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-13
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-13
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	5e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-13
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-13
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-13
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-13
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-13
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-13
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-13
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	5e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-13
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-13
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	3e-13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	7e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-13
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-13
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	9e-10
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	5e-13
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-13
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-13
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-13
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-12
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-12
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-12
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-12
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-12
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	8e-12
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-11
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-10
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	3e-11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	9e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-10
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	7e-10
2epa_A	72	Krueppel-like factor 10; transforming growth facto	4e-10
2epa_A	72	Krueppel-like factor 10; transforming growth facto	6e-08
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	3e-09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	1e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	5e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	1e-07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	2e-07
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	5e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-06
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	1e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	8e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 77.5 bits (192), Expect = 3e-20
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
             C  C Y       ++ H R H  ++P+KC YC++   Q S L  H +K  GD   
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 75.2 bits (186), Expect = 2e-19
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 75  RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
              +   P KC  C+YSC+  +AL+IHER H  D+P+ C  C     
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
          + C  C + T    ++ KHM+K  G+     
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 77.1 bits (191), Expect = 6e-20
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           S  + +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C   F+
Sbjct: 19  SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 62.5 bits (153), Expect = 4e-14
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
           + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H + H   K
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 54.0 bits (131), Expect = 5e-11
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 80  EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           E+PY C  E C    +QS +L  H R HTG KP+ C+ C   FS
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS 45

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 76.3 bits (189), Expect = 1e-19
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           + C  C       + +K HMR HTG KPYKC+ C Y+   SS+L  H R H+ ++P+ CQ
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 115 QCRDTFS 121
            C     
Sbjct: 69  ICPYASR 75

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 70.1 bits (173), Expect = 4e-17
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
           Y C  CDY    S  + KH+R H+ E+P+KC+ C Y+   SS L +H R HTGD     
Sbjct: 37  YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 65.9 bits (162), Expect = 2e-15
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
                P+KCE C    ++   LK H R HTG KPY C+ C    +
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAA 47

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 73.7 bits (182), Expect = 1e-18
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 71  KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFS 121
               R H+GEKPY+C  C    TQS  +K+H  +        + C  C    +
Sbjct: 4   GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 65.6 bits (161), Expect = 2e-15
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDKPY 111
           Y CY C      S  MK H+ +   E    + C +C     + S L +H RK H+   P 
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 98  LKIHERKHTGDKPYICQQCRDTFS 121
                R H+G+KPY C  C   F+
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFT 26

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 74.1 bits (183), Expect = 2e-18
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFS 121
           S+ +K+H R+HTG KP++C+ C    ++S  LK H R HTG+KP+ C+   C+  F+
Sbjct: 51  SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 73.3 bits (181), Expect = 4e-18
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
              ++ H RKHTGEKPY+C++  C    ++S  LK H+R+HTG KP+ C+ C+  FS
Sbjct: 21  LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFS 77

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 56.0 bits (136), Expect = 2e-11
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 78  TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFS 121
           + ++P+ C Y  C     + S L++H RKHTG+KPY C  + C   FS
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFS 49

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 52.1 bits (126), Expect = 6e-10
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 105
           + C  C      S+ +K H R HTGEKP+ C +  C     +S  L  H   H
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 72.5 bits (179), Expect = 2e-18
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 66  MSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           M      H      +KPYKC+ C  S      L  H+  HTG+KPY C  C   F+
Sbjct: 1   MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 62.9 bits (154), Expect = 2e-14
 Identities = 22/57 (38%), Positives = 29/57 (50%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
           Y C  C        ++  H   HTGEKPY+C  C     + + LK H R H+G+KPY
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 72.1 bits (178), Expect = 8e-18
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
                   +K + C++C    T+S  L IHER HT ++PY C  C   F 
Sbjct: 7   GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR 56

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 70.9 bits (175), Expect = 2e-17
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           + C  C  H   S ++  H R HT E+PY C+ C  +  +   L+ H   H+ +KP+ CQ
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77

Query: 115 QCRDTFS 121
           +C   F 
Sbjct: 78  ECGKGFC 84

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 62.1 bits (152), Expect = 6e-14
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
            H   H+ EKP+KC+ C     QS  L +H+  H        
Sbjct: 63  DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 39.7 bits (94), Expect = 3e-05
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 95  SSALKIHERKHTGDKPYICQQCRDTFS 121
           SS            K +IC+ C   F+
Sbjct: 2   SSGSSGGRLPSKTKKEFICKFCGRHFT 28

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 70.9 bits (175), Expect = 1e-17
 Identities = 20/55 (36%), Positives = 27/55 (49%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           S    +   +    + YKC+ C  S + SS L  H R HTG+KPY C +C   F 
Sbjct: 3   SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 59.4 bits (145), Expect = 4e-13
 Identities = 24/45 (53%), Positives = 27/45 (60%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
           S D+ KH R HTGEKPYKC+ C  +  Q S L  H R HTG  P 
Sbjct: 31  SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.3 bits (98), Expect = 3e-06
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 94  QSSALKIHERKHTGDKPYICQQCRDTFS 121
            S +    E +    + Y C +C  +FS
Sbjct: 2   SSGSSGRSEWQQRERRRYKCDECGKSFS 29

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 71.4 bits (176), Expect = 2e-17
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK---HTGDKPY 111
             C  C    L    +K H RKHTGEKP++C  C     +   L  HE +   +  ++ +
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67

Query: 112 ICQQCRDTFS 121
            C  C++TF 
Sbjct: 68  TCSVCQETFR 77

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 68.3 bits (168), Expect = 4e-16
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 55  YTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
           + C  C       E++ +H  +   +  E+ + C  C  +  +   L++H   HTG+ PY
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95

Query: 112 ICQQCRDTFS 121
            C  C   F 
Sbjct: 96  KCSSCSQQFM 105

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 65.6 bits (161), Expect = 5e-15
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
            +G    +C  C         LK+H RKHTG+KP+ C +C   + 
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYF 46

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 52.5 bits (127), Expect = 5e-10
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDK 109
           +TC  C        +++ HM  HTGE PYKC  C+    Q   L+ H  + H+G  
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 70.1 bits (173), Expect = 3e-17
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
            H+  H+  +PY C+YC     Q S +K H   HTG+KP+ CQ C   FS
Sbjct: 19  THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 55.9 bits (136), Expect = 1e-11
 Identities = 24/41 (58%), Positives = 28/41 (68%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
             DMKKH   HTGEKP+KC+ C  + +QSS L  H RKHTG
Sbjct: 42  KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 47.4 bits (114), Expect = 2e-08
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 83  YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           + C+ C  S  +SS L  H   H+  +PY CQ C   F 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFH 40

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 72.1 bits (178), Expect = 5e-17
 Identities = 29/67 (43%), Positives = 39/67 (58%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           Y C  C        +++ H R HTGEKPY C  C  S +Q + L+ H+R HTG+KPY C 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137

Query: 115 QCRDTFS 121
           +C  +FS
Sbjct: 138 ECGKSFS 144

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 71.7 bits (177), Expect = 7e-17
 Identities = 26/50 (52%), Positives = 32/50 (64%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           +H R HTGEKPYKC  C  S +    L  H+R HTG+KPY C +C  +FS
Sbjct: 39  EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFS 88

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 71.7 bits (177), Expect = 8e-17
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           +H R HTGEKPYKC  C  S +Q + L+ H+R HTG+KPY C +C  +FS
Sbjct: 67  RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFS 116

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 71.3 bits (176), Expect = 1e-16
 Identities = 29/67 (43%), Positives = 37/67 (55%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           Y C  C         ++ H R HTGEKPYKC  C  S ++   L  H+R HTG+KPY C 
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165

Query: 115 QCRDTFS 121
           +C  +FS
Sbjct: 166 ECGKSFS 172

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 70.2 bits (173), Expect = 3e-16
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
                  GEKPY C  C  S ++S  L  H+R HTG+KPY C +C  +FS
Sbjct: 11  AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 57.8 bits (141), Expect = 1e-11
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
            H R HTGEKPYKC  C  S ++  AL +H+R HTG K 
Sbjct: 151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.4 bits (101), Expect = 6e-06
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 93  TQSSALKIHERKHTGDKPYICQQCRDTFS 121
             SS+         G+KPY C +C  +FS
Sbjct: 4   FGSSSSVAQAALEPGEKPYACPECGKSFS 32

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 69.1 bits (170), Expect = 9e-17
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H        P +  
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62

Query: 115 QCRDTFS 121
           +  +  S
Sbjct: 63  KVEELLS 69

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 56.0 bits (136), Expect = 1e-11
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 81  KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           KP++C  C  + ++S  L  H R HTG+KP+ C  C   F+
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 50.2 bits (121), Expect = 2e-09
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE---RKHTGDK 109
           + C  C      S++ K+H        P   +      +++  L+      +K  G++
Sbjct: 32  FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 69.1 bits (170), Expect = 1e-16
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 53  YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKP 110
           +      C      S  +K H+R HTGEKPY C  + C +   +S  L  H RKHTG +P
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65

Query: 111 YICQQCRDTFS 121
           + CQ+C   FS
Sbjct: 66  FQCQKCDRAFS 76

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 55.2 bits (134), Expect = 2e-11
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 76  KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFS 121
           K T         C  + T+SS LK H R HTG+KPY C    C   F+
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA 48

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 49.8 bits (120), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 28/39 (71%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
           S+++ +H RKHTG +P++C+ C  + ++S  L +H ++H
Sbjct: 50  SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 69.1 bits (170), Expect = 1e-16
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFS 121
           +H   H+GEKPY C  C     +   +  H R H G   KPYICQ C   FS
Sbjct: 25  RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 64.4 bits (158), Expect = 7e-15
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
            +G     CE C         L  H+  H+G+KPY C  C   F 
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFK 46

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 47.9 bits (115), Expect = 1e-08
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDK 109
           Y+C  C       + M  H+R H G   KPY C+ C    ++   L  H ++ H+G  
Sbjct: 36  YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 68.8 bits (169), Expect = 1e-16
 Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 67  SEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           S  +K H+R HTGEKPYKC  E C +   +S  L  H RKHTG KP+ C  C  +FS
Sbjct: 30  SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 53.0 bits (128), Expect = 2e-10
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
           S+++ +H RKHTG KP++C  C  S ++S  L +H ++H 
Sbjct: 60  SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 49.9 bits (120), Expect = 3e-09
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFS 121
           S    +  R H  + P     C    T+SS LK H R HTG+KPY C  + C   F+
Sbjct: 6   SGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 69.0 bits (170), Expect = 1e-16
 Identities = 19/50 (38%), Positives = 22/50 (44%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           +HM  H G +PY C  C         L  H + HTG KPY C  C   F 
Sbjct: 27  RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 65.5 bits (161), Expect = 3e-15
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 74  MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
               +G+K Y C+ C  S T  S    H   H G +PY C  C   F 
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK 48

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 65.5 bits (161), Expect = 4e-15
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
           Y C  C     M   +  HM+ HTG KPY+C  CA       +   H    +  K Y   
Sbjct: 38  YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95

Query: 115 QCRDTFS 121
           +     +
Sbjct: 96  KAEQNTT 102

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSAL 98
           H    +  K Y+      + T++S  
Sbjct: 82  HRHVTSCTKSYEAAKAEQNTTEASGP 107

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 67.1 bits (165), Expect = 3e-16
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
                H+GEKPY C  C  + ++SS L  H+R HTG+KPY C +C   FS
Sbjct: 4   GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 59.8 bits (146), Expect = 2e-13
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
           +H R HTGEKPYKC  C  + +Q+S L  H+R HT     
Sbjct: 32  QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 69.2 bits (170), Expect = 3e-16
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 55  YTCYACDYHTLM-----SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 107
           + C+       +        +  HMR+HTGEKP+KC +  C  S ++   LK H R HTG
Sbjct: 35  FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94

Query: 108 DKPYICQQ--CRDTFSSL 123
           +KPY+C+   C   FS+ 
Sbjct: 95  EKPYMCEHEGCSKAFSNA 112

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 64.9 bits (159), Expect = 2e-14
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIH-ERKHTGDKPYICQ--QCRDTFS 121
            E++K H+R HTGEKPY CE+  C+ + + +S    H  R H+ +KPY+C+   C   ++
Sbjct: 82  LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 67  SEDMKKHM-RKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 107
           + D  KH  R H+ EKPY C+   C    T  S+L+ H +   G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 80  EKPYKCEYCAYSCTQSSALKIH---ERKHTGDKPYICQQC 116
           E   + + C+        L  H   E  H   K ++C   
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG 40

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 67.5 bits (166), Expect = 9e-16
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYI 112
           + C  C    + S  +K+H   HTGEKP++C +  C    +    L+ H R HTGD+PY+
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94

Query: 113 C--QQCRDTFS 121
           C    C   F+
Sbjct: 95  CPFDGCNKKFA 105

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 64.5 bits (158), Expect = 1e-14
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFS 121
           +  M+KH+  H G + + C  C  +  +SS LK H+  HTG+KP+ C  + C   FS
Sbjct: 20  NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 60.6 bits (148), Expect = 4e-13
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPY 111
             +++ H+R HTG++PY C +  C     QS+ LK H   H   K  
Sbjct: 77  DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 80  EKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
            +   C +  C      +SA++ H   H G + ++C +C   F 
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFV 45

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 66.4 bits (163), Expect = 9e-16
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG----DKPYICQQCRDTFSSLYLFR 127
              R HTGEKPY C +C  +  Q   L +H +++         ++C +C  TF+     R
Sbjct: 5   SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR----R 60

Query: 128 NRLQSH 133
           N +  H
Sbjct: 61  NTMARH 66

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 63.3 bits (155), Expect = 1e-14
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGE----KPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
           Y C  CD      + +  H +++         + C  C  + T+ + +  H     G   
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 111 YICQQCRDTF 120
              +    + 
Sbjct: 76  VEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 98  LKIHERKHTGDKPYICQQCRDTFS 121
                R HTG+KPY C  C  TF 
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFR 26

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 65.6 bits (161), Expect = 1e-15
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 67  SEDMKKHMR-KHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 120
            + +  H + +H  +K + C    C  S      LK H + H+  + YIC+    + 
Sbjct: 22  RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 51.4 bits (124), Expect = 5e-10
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 77  HTGEKPYKCEY--CAYSCTQSSALKIHER-KHTGDKPYICQQ--CRDTFS 121
            +G     C++  C    +    L  H++ +H   K + C +  C  +F+
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFN 51

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKCE C         L +H++ HTG++P   
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 64.0 bits (156), Expect = 6e-15
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHT---GDKPYICQQCRDTFS 121
            +G    +CE C ++C Q ++L  H+RKH        + C+ C   F 
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE 49

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 59.7 bits (145), Expect = 3e-13
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHT---GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
             C  C +       +  H RKH        + CE+C     +  ++  H  K       
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 112 ICQQC 116
             Q+ 
Sbjct: 68  APQES 72

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 66.2 bits (162), Expect = 6e-15
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC 113
           SE++K H R HTGEKP+KCE+  C      SS  K H   HT DK    
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 65.0 bits (159), Expect = 1e-14
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 70  MKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFS 121
           +  H+R HTGEKP+ C +  C     +S  LKIH+R HTG+KP+ C+   C   F+
Sbjct: 78  LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFA 133

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY--SCT-------QSSALKIHERKH 105
               +CD       ++  H+       P +  +  Y   C            L  H R H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 106 TGDKPYIC--QQCRDTFSSL 123
           TG+KP+ C    C   F+  
Sbjct: 86  TGEKPFPCPFPGCGKIFARS 105

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 58.5 bits (142), Expect = 5e-12
 Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 9/61 (14%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY---------ICQQCRDTFSSL 123
                  +     + C  + +    L  H        P           C +   +F + 
Sbjct: 16  CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75

Query: 124 Y 124
           Y
Sbjct: 76  Y 76

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.9 bits (154), Expect = 7e-15
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC  C  + T+ S L IH++ HTG++    
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.5 bits (153), Expect = 1e-14
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                +GEKP+KCE C    TQ+S L  H+R HTG+KP     
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 62.2 bits (152), Expect = 1e-14
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                TGEKPY C+ C  S   +S L  H+R H+G+KP     
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 34.5 bits (80), Expect = 7e-04
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 101 HERKHTGDKPYICQQCRDTFS 121
                TG+KPY C++C  +F 
Sbjct: 3   SGSSGTGEKPYNCKECGKSFR 23

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.2 bits (152), Expect = 1e-14
 Identities = 20/42 (47%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC  C    TQ+S L  H+R HTG KP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.2 bits (152), Expect = 2e-14
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 +GEKPYKC  C     +   L  H+R HTG+K    
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 62.2 bits (152), Expect = 2e-14
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKP+KC  C    ++ SAL +H + HTG+KP   
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.2 bits (152), Expect = 2e-14
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPYKC  C  S T  S L+IH++ HTG++    
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.2 bits (152), Expect = 2e-14
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY+C  C  S T+ S L +H++ HTG+KP   
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 100 IHERKHTGDKPYICQQCRDTFS 121
                 TG+KPY C  C  +F+
Sbjct: 2   SSGSSGTGEKPYECSICGKSFT 23

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 62.1 bits (152), Expect = 2e-14
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPY+C  C  +    S L +H+R HTG+     
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 100 IHERKHTGDKPYICQQCRDTFS 121
                 TG+KPY C +C+  F+
Sbjct: 2   SSGSSGTGEKPYECNECQKAFN 23

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 61.8 bits (151), Expect = 2e-14
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                 GEK +KC  C    +Q+S+L++H+  H G+KP     
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 61.7 bits (151), Expect = 2e-14
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TG KPY C  C  +    S L IH R HTG+     
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 101 HERKHTGDKPYICQQCRDTFS 121
                TG KPY+C +C   F 
Sbjct: 3   SGSSGTGMKPYVCNECGKAFR 23

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                 +GEKPY C+YC  +   S+ L  H+R HTG+KP     
Sbjct: 2   SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY+C  C  S  + S L +H+R HTG+ P   
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY CE C  +    S L+ H+R HTG+KP   
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 61.0 bits (149), Expect = 3e-14
 Identities = 16/39 (41%), Positives = 18/39 (46%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
                 GEKPYKCE C     Q + L+ H   HTG  P 
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 GEK YKC+ C    +QSS L+ H+R HTG+KP   
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
                TGEKPYKC+ C  S    S+L +H+R HTG+KP    
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 19/42 (45%), Positives = 20/42 (47%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY C  C  S  Q S L  H R HTG+KP   
Sbjct: 2   SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 61.0 bits (149), Expect = 4e-14
 Identities = 17/41 (41%), Positives = 18/41 (43%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPYKCE C         L  H   HTG+KP   
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 4e-14
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 G+K +KC  C  + TQSS+L +H+R HTG+KP   
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 4e-14
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC  C  + +Q+S L  H+R HTG+KP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 4e-14
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKP++C  C  S + +S L +H+R HTG+ P   
Sbjct: 2   SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 4e-14
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                 +GEKPYKC  C  +  + + L  H R HTG +P     
Sbjct: 2   SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 61.1 bits (149), Expect = 5e-14
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQQCRDTFSS 122
                +  KPY C+ C    ++   L  H ++ HT ++P+ CQ      SS
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 5e-14
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKP+KC+ C  S    S L  H   HT +KP   
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 5e-14
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC  C  +    S+L IH+  H+G+KP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 5e-14
 Identities = 19/42 (45%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC  C    TQ+S L  H   HTG+KP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 60.6 bits (148), Expect = 5e-14
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TG++PY+C  C  +    S+L  H R HTG+KP   
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 60.6 bits (148), Expect = 5e-14
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKP++C  C  S + SS L  H+R HTG+KP   
Sbjct: 2   SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 6e-14
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGE+ Y+C  C  +  Q S L +H+R H G+KP   
Sbjct: 2   SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 6e-14
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEK Y C+ C  S +++  L  HER H+G+KP   
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 6e-14
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY+C  C  + +   +L +H+R H+G KP   
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 100 IHERKHTGDKPYICQQCRDTFS 121
                 TG+KPY C  C   FS
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFS 23

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 6e-14
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TG KPY+C  C  + +Q+S L  H+R HTG+KP   
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 100 IHERKHTGDKPYICQQCRDTFS 121
                 TG KPY C +C   FS
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFS 23

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 6e-14
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 +GEKP++CE C    TQ+S L  H+R HTG+KP   
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 7e-14
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                + EKPYKCE C     +   L +H+R H G+K    
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 60.2 bits (147), Expect = 7e-14
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                 G  PYKC  C  S +    L +H+R HT +KP     
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 7e-14
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGE+P+KC  C  S  QS+ L  H+R HTG+KP   
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 60.2 bits (147), Expect = 8e-14
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TG KPY C  CA + +  S L +H+R HTG KP   
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 101 HERKHTGDKPYICQQCRDTFS 121
                TG KPY C QC  TFS
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFS 23

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 8e-14
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPY+C  C  + T  S L  H++ HTG+KP   
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 60.3 bits (147), Expect = 8e-14
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
                +GEKP+KCE C      +S    H+R H+G+KP    
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 8e-14
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                +GEKPY C  C  + +Q S L  H+R HTG+KP   
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 100 IHERKHTGDKPYICQQCRDTFS 121
                 +G+KPY C +C  TFS
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFS 23

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 60.2 bits (147), Expect = 9e-14
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY+C+ C  + +Q++ L  H+R HTG+KP   
Sbjct: 2   SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 61.1 bits (149), Expect = 9e-14
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSS 122
              +K H   HT + PY+C +  C    +  S LK HE+ H G        C     +
Sbjct: 16  HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT 73

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 83  YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSS 122
           Y C +  C  +  + + LK+H+  HT   PY C    C   FS 
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL 45

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 53  YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK 104
           Y+     CD    +   +K+H + H G    K + C++     +    H  +
Sbjct: 32  YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 60.2 bits (147), Expect = 9e-14
 Identities = 16/39 (41%), Positives = 16/39 (41%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
                 GEKPY CE C         LK H R HTG  P 
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 83
          Y C  C       + +K H+R HTG  P 
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 59.9 bits (146), Expect = 9e-14
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
                 GEKPY+C+ C  + +Q  +L +H R HTG  P 
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 101 HERKHTGDKPYICQQCRDTFS 121
                 G+KPY C QC   FS
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFS 22

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-13
 Identities = 20/42 (47%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC  C    TQ+S L  H R HTG KP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-13
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 +GEKP+KC+ C  +  Q+  L  H R HTG+KP   
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 59.8 bits (146), Expect = 1e-13
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEK YKC  C    +++S L  H++ HTG+KP   
Sbjct: 2   SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-13
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
                TGE+PY C  C  + T  S L  H++ HTG+KP    
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 1e-13
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 GEKPY C  C  + +  S L IH R H+G+KP   
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 71  KKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFS 121
           + H+ KHTGEKP+ C+   C    T    L  H   HTG+K + C    C   F+
Sbjct: 31  QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT 85

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 72  KHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLY 124
                    K Y C +  C  +  ++  L+ H  KHTG+KP+ C++  C   F+SL+
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH 58

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 71  KKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGD---KPYICQQCRDTFSSL 123
           K H   HT + PY+C  E C    +  S LK HE+ H G    K   C     T++  
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 58.4 bits (142), Expect = 9e-12
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 71  KKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDK--PYIC--QQCRDTFS 121
            +H   HTGEK + C+   C    T  + +K H  +    K   Y+C  + C   F 
Sbjct: 61  TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFK 117

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 67  SEDMKKHMRKHTGEK--PYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTF 120
             +MKKH  +    K   Y C +  C  +  + + LK+H+  HT   PY C    C   F
Sbjct: 87  KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 146

Query: 121 SSLYLFRNRLQSH 133
           S      +RL+ H
Sbjct: 147 SL----PSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 71  KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK 104
           K+H + H G    K + C++     +    H  +
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-13
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKP+KC  C  S  Q   L  H+R HTG+KP   
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 1e-13
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY+C+ C+ + TQ + L  H++ HTG+KP   
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 9e-04
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 101 HERKHTGDKPYICQQCRDTFS 121
                TG+KPY C+ C   F+
Sbjct: 3   SGSSGTGEKPYECKVCSKAFT 23

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-13
 Identities = 19/41 (46%), Positives = 22/41 (53%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                +GEKPYKC  C    TQ+S L  H R HTG+KP   
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-13
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY C  C  +   S+ L  H R HT +     
Sbjct: 2   SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 1e-13
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPY+C  C  + +  S+L  H+  HTG KP   
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 59.6 bits (145), Expect = 1e-13
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 73  HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 114
                TGEKP+ C +  C +  ++S  L  H R H+G KP    
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 35.0 bits (81), Expect = 5e-04
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 67 SEDMKKHMRKHTGEKPYKCE 86
          S+++ +H R H+G KP    
Sbjct: 27 SDELSRHRRSHSGVKPSGPS 46

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 59.5 bits (145), Expect = 1e-13
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                  GE+ ++C  C     Q+S    H R HTG+KP   
Sbjct: 2   SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 2e-13
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKP++C  C  +    S L +H+R HTG+KP   
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 2e-13
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC+ C  +   SS L  H   H+G++P   
Sbjct: 2   SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-13
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TG KPY C  C  + +  S+L  H+  HTG+KP   
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 2e-13
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGE+ Y+C  C  +  + S L +H+R HTG+KP   
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 2e-13
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TG+KPYKC  C    TQ+S L  H   HTG+KP   
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 2e-13
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPY C  C  + T  S L  H++ HT  KP   
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.4 bits (145), Expect = 2e-13
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPY+C  C  +  Q + L  H+R HTG+KP   
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 59.1 bits (144), Expect = 2e-13
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TG+KP++C +C  S      L  H+R HTG+K    
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 100 IHERKHTGDKPYICQQCRDTFS 121
                 TG KP+ C  C  +F 
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFR 23

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 2e-13
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                TG K ++C  C  + T+ S L +H++ HTG+KP     
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.0 bits (144), Expect = 2e-13
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPYKC  C    TQ+S L  H   HTG+KP   
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 2e-13
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPYKC  C  +    S L  H+  HTG+KP   
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 2e-13
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPY+C+ C  + +  ++L  H+R H+G+KP   
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 100 IHERKHTGDKPYICQQCRDTFS 121
                 TG+KPY C  CR  FS
Sbjct: 2   SSGSSGTGEKPYECDVCRKAFS 23

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 2e-13
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKP+ C  C  + +    L  H R HTG+KP   
Sbjct: 2   SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 2e-13
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPYKC  C      +S L  H+R HTG+KP   
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.0 bits (144), Expect = 2e-13
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGE P+ C  C    T  + L IH++ HTG++P   
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 58.7 bits (143), Expect = 3e-13
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                +GEKPY+C  C  +    S L +HER H G      
Sbjct: 3   SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 101 HERKHTGDKPYICQQCRDTFS 121
                +G+KPY C +C   F 
Sbjct: 3   SGSSGSGEKPYECNECGKAFI 23

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 3e-13
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKPYKC  C  +   +S+   H+R HTG +P   
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.6 bits (143), Expect = 4e-13
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGEKPYKC  C     ++S L  H+  HTG+KP   
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 59.1 bits (144), Expect = 4e-13
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 75  RKHTGEKPYKCEYCAYSCTQSSALKIHER--KHTGDKPYICQQCRDTFS 121
               GE  Y+C+ C+   T  S    H         K Y C  C   F+
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT 51

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 50.2 bits (121), Expect = 9e-10
 Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)

Query: 55  YTCYACDYHTLMSEDMKKHMR--KHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
           Y C  C        +  +H         K Y C +C    T+   +  H +    
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 5e-13
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKP KC  C  +    S L +H+R H  DK    
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 6e-13
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGE PY+C  C  + ++   L  H+R H G+KP   
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 7e-13
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
                 +G+KPY+C+ C  +  Q   L  H+R HTG++      
Sbjct: 2   SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 9e-13
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 +GE+P+KC  C     + S L  H R H+ +K    
Sbjct: 2   SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.2 bits (139), Expect = 1e-12
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                TGEKP++C+ C  + + S +L  H R H    P   
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 9e-04
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 101 HERKHTGDKPYICQQCRDTFS 121
                TG+KP+ C++C   FS
Sbjct: 3   SGSSGTGEKPFQCKECGMNFS 23

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 2e-12
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                  GEKPY+C  C  S + S  L  H   HT +KP   
Sbjct: 2   SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 56.4 bits (137), Expect = 2e-12
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                +GEK + C+ C  +    SAL+IH+R H G+K    
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 56.4 bits (137), Expect = 3e-12
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
            +GEKP+ C  C  + +  S L +H++ H  +KP   
Sbjct: 5   SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 56.0 bits (136), Expect = 4e-12
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYIC 113
                TG+KPY+C  C  +  Q+++L  H R  HTG+KP   
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 55.2 bits (134), Expect = 8e-12
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 75  RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
              +GE PY+C  C  +  +   L  H+R H G+     
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 55.2 bits (134), Expect = 8e-12
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 +  K ++C  C    T  S L  H+R HTG+KP   
Sbjct: 2   SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 54.8 bits (133), Expect = 1e-11
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 TGE PY+C  C    ++   L  H++ H+G      
Sbjct: 2   SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 54.6 bits (132), Expect = 1e-11
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
                 GE PY C  C  S TQ  +L +H+R  +   P 
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.4 bits (132), Expect = 1e-11
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                +GE+PY C  C  +  + S L  H ++H  +K    
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 55.0 bits (133), Expect = 2e-11
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 67  SEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
             ++  ++      +PY C  E C    ++S  L  H R HTG KP+ C+ C   FS
Sbjct: 6   MNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 51.9 bits (125), Expect = 3e-10
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
           S+++ +H+R HTG+KP++C  C  + ++S  L  H R HT
Sbjct: 34  SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 53.7 bits (130), Expect = 3e-11
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 75  RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
              +G++ Y+C+ C  S  Q  +L +HER HTG  P 
Sbjct: 3   SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 54.0 bits (129), Expect = 3e-11
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 54  KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
           KY C  C         +KKH+R HT  +PY C YC +S      L  H +     K
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 45.1 bits (106), Expect = 9e-08
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 83  YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
           Y CE C     + S LK H R HT  +PY C  C  +F +       ++S 
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 52.5 bits (127), Expect = 1e-10
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 81  KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           + + CE C  +  +   LK H R HT +KPY C  C   F+
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 50.6 bits (122), Expect = 7e-10
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 55  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDK 109
           + C  C       E +K+H R HT EKPY C  C  + T+   L  H +K H+G+ 
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 51.6 bits (124), Expect = 4e-10
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFS 121
           S          +  + + C +  C  +  +SS LK H R HTG+KP+ C    C   F+
Sbjct: 2   SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.8 bits (109), Expect = 6e-08
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 67  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 105
           S  +K H R HTGEKP+ C +  C     +S  L  H R H
Sbjct: 32  SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
                 T  K Y C  C  + T+   L  H++ HT       
Sbjct: 2   SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 45.4 bits (108), Expect = 4e-08
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
            +GEKPY C  C  + + ++ L  H++ HT       
Sbjct: 5   SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 44.5 bits (105), Expect = 1e-07
 Identities = 11/42 (26%), Positives = 14/42 (33%)

Query: 75  RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
                 K   CE C         L  H+  H+G+KPY     
Sbjct: 5   SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH--ERKHTGDKPYICQQCRDTFSSLY 124
               K +    TG   ++C+ C+ +      L +H  E  H  D  +          S  
Sbjct: 4   GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63

Query: 125 LFRNRLQSHG 134
             R+ L+  G
Sbjct: 64  RKRSLLEMEG 73

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.1 bits (98), Expect = 5e-06
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 54  KYTCYACDYHTLMSEDMKKHMR-----KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
           K+ C  C        ++  HM      +    +        +S  +  +L   E K    
Sbjct: 19  KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78

Query: 109 KPYICQQCRDTFSSL 123
           K   C  C  +F SL
Sbjct: 79  KVLKCMYCGHSFESL 93

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 67  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
           S    K  + H G++  KC  C     + S         +  K  +C++CR    
Sbjct: 3   SGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSC 50

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 13/39 (33%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
                +  K   CE C     Q +AL   E   +G K  
Sbjct: 30  RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 43.7 bits (103), Expect = 2e-07
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
                  GE P+KC  C    TQ + L  HER H     
Sbjct: 2   SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
             R  TG KP++C  C  S ++S  L +H ++H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 9/68 (13%)

Query: 55  YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAY--------SCTQSSALKIHERKH 105
               +CD       ++  H+   H G        C +        S      L  H R H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 106 TGDKPYIC 113
           TG+K    
Sbjct: 86  TGEKSGPS 93

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 36

 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 78  TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
           +  KPYKC  C+Y+    + L +H RKHTG+K
Sbjct: 5   SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 35.9 bits (82), Expect = 8e-04
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 37  MYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMR-KHTG---EKPYKCEYCAYSC 92
           M H        +  +   Y C  C + T        H+  +H        Y C  C +  
Sbjct: 1   MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60

Query: 93  TQSSALKIHERK-HTGDKPYICQ 114
            +  AL  H  K H G++ +   
Sbjct: 61  KRYDALSEHNLKYHPGEENFKLT 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.92
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.92
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.91
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.91
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.9
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.9
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.9
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.89
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.88
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.86
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.85
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.84
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.82
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.81
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.81
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.78
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.78
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.77
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.76
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.75
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.74
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.74
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.74
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.73
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.72
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.71
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.7
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.7
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.7
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.69
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.69
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.68
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.68
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.68
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.67
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.66
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.66
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.66
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.66
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.65
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.65
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.64
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.62
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.61
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.61
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.6
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.6
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.59
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.59
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.59
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.59
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.55
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.54
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.54
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.54
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.52
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.51
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.48
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.48
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.47
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.47
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.47
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.47
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.47
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.46
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.45
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.44
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.44
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.43
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.42
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.41
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.39
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.39
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.38
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.38
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.38
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.37
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.37
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.36
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.36
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.36
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.35
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.35
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.34
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.32
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.32
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.31
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.3
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.27
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.25
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.24
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.23
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.21
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.21
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.21
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.2
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.2
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.2
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.2
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.15
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.15
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.12
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.09
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.08
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.07
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.06
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.05
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.04
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.03
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.03
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.02
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.01
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.99
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.98
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.96
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.96
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.96
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.94
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.94
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.92
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.89
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.89
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.87
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.87
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.87
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.83
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.82
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.79
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.77
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.72
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.72
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.71
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.7
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.15
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.69
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.69
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.68
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.67
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.66
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.61
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.61
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.6
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.6
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.59
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.58
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.58
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.56
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.55
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.54
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.54
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.54
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.94
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.93
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.5
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.5
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.49
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.48
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.47
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.47
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.46
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.46
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.84
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.45
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.44
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.44
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.43
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.81
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.43
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.38
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.59
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.17
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.14
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.91
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.56
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.43
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.92
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.91
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.9
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.22
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.09
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	94.35
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.64
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	93.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.59
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.44
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.32
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	92.45
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	91.61
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	90.91
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	90.86
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.77
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	90.56
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	90.37
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	89.87
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	89.77
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	89.61
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	89.48
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	89.45
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	89.35
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.17
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	89.16
1yk4_A	52	Rubredoxin, RD; electron transport; 0.69A {Pyrococ	88.8
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	88.32
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	88.3
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	88.23
2kn9_A	81	Rubredoxin; metalloprotein, ssgcid, structural gen	87.78
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	86.51
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	86.27
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	85.79
2v3b_B	55	Rubredoxin 2, rubredoxin; alkane degradation, iron	85.79
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	84.94
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	84.39
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	83.91
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.72
1dx8_A	70	Rubredoxin; electron transport, zinc-substitution;	83.62
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	82.48
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	81.3
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	80.96
1s24_A	87	Rubredoxin 2; electron transport; NMR {Pseudomonas	80.78
3qt1_I	133	DNA-directed RNA polymerases I, II, and III subun;	80.62

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=5.3e-30  Score=166.79  Aligned_cols=107  Identities=32%  Similarity=0.612  Sum_probs=75.0

Q ss_pred             ccccCCCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCch
Q psy3507          28 LLVPTAEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSS   96 (134)
Q Consensus        28 h~~~h~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   96 (134)
                      |++.|.++++|.|++|++.|.           +.++.+|.|+.|++.|.+...|..|+++|.++++|.|++|++.|.+..
T Consensus        68 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  147 (190)
T 2i13_A           68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED  147 (190)
T ss_dssp             HHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred             HHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHH
Confidence            444444445555555555554           445566777777777777777777777777777777777777777777


Q ss_pred             hHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          97 ALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        97 ~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .|..|+++|++++||.|+.|++.|.+...|..|+++|+
T Consensus       148 ~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          148 NLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC-
T ss_pred             HHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcC
Confidence            77777777777777777777777777777777777764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=7.8e-29  Score=161.27  Aligned_cols=109  Identities=31%  Similarity=0.594  Sum_probs=101.0

Q ss_pred             ccccccCCCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccC
Q psy3507          26 RLLLVPTAEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQ   94 (134)
Q Consensus        26 ~~h~~~h~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   94 (134)
                      ..|++.|.++++|.|+.|++.|.           +.++.+|.|+.|++.|.+...|..|++.|.++++|.|++|++.|.+
T Consensus        38 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  117 (190)
T 2i13_A           38 AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ  117 (190)
T ss_dssp             HHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred             HHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCC
Confidence            45899999999999999999998           5677899999999999999999999999999999999999999999


Q ss_pred             chhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          95 SSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        95 ~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ...|..|+++|++++||.|+.|++.|.+...|..|+++|+
T Consensus       118 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  157 (190)
T 2i13_A          118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT  157 (190)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999883

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.94  E-value=2.7e-27  Score=143.17  Aligned_cols=101  Identities=31%  Similarity=0.658  Sum_probs=95.9

Q ss_pred             CCCccccCCC--CCCccc-----------CCCCcceeeC--CCCCccCChHHHHHHHHHhcCCCceeccccCccccCchh
Q psy3507          33 AEELMYHCKT--CSTVSH-----------PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSA   97 (134)
Q Consensus        33 ~~~~~~~C~~--C~~~f~-----------~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   97 (134)
                      +++++|.|++  |++.|.           +.++.+|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.+...
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            5678999987  999998           6677899999  799999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCCeec--CcChhhhcCHHHHHHHHHhc
Q psy3507          98 LKIHERKHTGDKPYIC--QQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        98 l~~H~~~h~~~~~~~C--~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |..|+++|+++++|.|  +.|++.|.+...|.+|+++|
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999  89999999999999999987

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=2.5e-26  Score=139.77  Aligned_cols=102  Identities=21%  Similarity=0.462  Sum_probs=94.7

Q ss_pred             CCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHH---hcCCCceeccccCccccCchhH
Q psy3507          33 AEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSCTQSSAL   98 (134)
Q Consensus        33 ~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~~~~~l   98 (134)
                      +++++|+|++|++.|.           +.++++|.|+.|++.|.....|..|+..   +.++++|.|++|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            4678899999999998           6778899999999999999999999985   5778999999999999999999


Q ss_pred             HHHhhhcCCCCCeecCcChhhhcCHHHHHHHHH-hcC
Q psy3507          99 KIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ-SHG  134 (134)
Q Consensus        99 ~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~-~H~  134 (134)
                      ..|+++|++++||.|+.|++.|.+...|.+|++ .|+
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             HHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            999999999999999999999999999999997 563

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=1.1e-26  Score=143.58  Aligned_cols=97  Identities=23%  Similarity=0.372  Sum_probs=83.5

Q ss_pred             cccccCCCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCc
Q psy3507          27 LLLVPTAEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQS   95 (134)
Q Consensus        27 ~h~~~h~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   95 (134)
                      .+.++|.|+++|+|++||+.|.           +.++++|.|+.|++.|.....|..|+++|.+++||.|++|++.|.+.
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            3667888999999999999988           67788899999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhcCCCC------CeecCcChhhhcCH
Q psy3507          96 SALKIHERKHTGDK------PYICQQCRDTFSSL  123 (134)
Q Consensus        96 ~~l~~H~~~h~~~~------~~~C~~C~~~F~~~  123 (134)
                      ..|..|+++|++++      +|+|..|++.|...
T Consensus        92 ~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           92 QFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            99999988877653      58899999888754

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=1.8e-26  Score=150.11  Aligned_cols=109  Identities=28%  Similarity=0.503  Sum_probs=77.8

Q ss_pred             ccccccCCCCccccC--CCCCCccc-----------CCCCcceeeC--CCCCccCChHHHHHHH-HHh-cCCCceec--c
Q psy3507          26 RLLLVPTAEELMYHC--KTCSTVSH-----------PNISYKYTCY--ACDYHTLMSEDMKKHM-RKH-TGEKPYKC--E   86 (134)
Q Consensus        26 ~~h~~~h~~~~~~~C--~~C~~~f~-----------~~~~~~~~C~--~C~~~f~~~~~l~~H~-~~h-~~~~~~~C--~   86 (134)
                      ..|+++|.++++|.|  +.|++.|.           +.++++|.|+  .|++.|.+...|..|+ +.| .++++|.|  +
T Consensus        31 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~  110 (190)
T 1tf6_A           31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE  110 (190)
T ss_dssp             HHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSS
T ss_pred             HHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCC
Confidence            346667777777777  66777776           5566677777  6777777777777777 345 34567777  6


Q ss_pred             ccCccccCchhHHHHhhhcCCCCCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507          87 YCAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        87 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +|++.|.+...|..|+++|++++||.|+.  |++.|.+...|.+|+++|+
T Consensus       111 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A          111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             SSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSC
T ss_pred             CCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhC
Confidence            67777777777777777777777777766  7777777777777777764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=5.8e-27  Score=144.81  Aligned_cols=86  Identities=24%  Similarity=0.533  Sum_probs=83.1

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHH
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN  128 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~  128 (134)
                      +.|+++|.|++|++.|.....|..|+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.||+.|.+...|..
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~   96 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS   96 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHH
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q psy3507         129 RLQSHG  134 (134)
Q Consensus       129 H~~~H~  134 (134)
                      |+++|+
T Consensus        97 H~~~hh  102 (133)
T 2lt7_A           97 HIKSVH  102 (133)
T ss_dssp             HHHHHT
T ss_pred             HhHHhc
Confidence            998873

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=8.3e-26  Score=142.42  Aligned_cols=108  Identities=26%  Similarity=0.495  Sum_probs=98.5

Q ss_pred             cccc---cCCCCccccCCCC-----CCccc-----------CCCCcceeeCC--CCCccCChHHHHHHHHHhcCCCceec
Q psy3507          27 LLLV---PTAEELMYHCKTC-----STVSH-----------PNISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKC   85 (134)
Q Consensus        27 ~h~~---~h~~~~~~~C~~C-----~~~f~-----------~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C   85 (134)
                      .|++   +|.++++|.|+.|     ++.|.           +.++++|.|++  |++.|.....|..|+++|.++++|.|
T Consensus        21 ~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C  100 (155)
T 2gli_A           21 HHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC  100 (155)
T ss_dssp             HHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEEC
T ss_pred             HHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeC
Confidence            5776   7888999998753     48887           56778999985  99999999999999999999999999


Q ss_pred             cc--cCccccCchhHHHHh-hhcCCCCCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507          86 EY--CAYSCTQSSALKIHE-RKHTGDKPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        86 ~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++  |++.|.+...|..|+ +.|.+++||.|+.  |++.|.+...|..|+++|+
T Consensus       101 ~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             CSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            98  999999999999998 7899999999998  9999999999999999874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.92  E-value=3.5e-25  Score=143.93  Aligned_cols=106  Identities=24%  Similarity=0.415  Sum_probs=99.3

Q ss_pred             ccccccCCCCccccCC--CCCCccc------------C-CCCcceee--CCCCCccCChHHHHHHHHHhcCCCceeccc-
Q psy3507          26 RLLLVPTAEELMYHCK--TCSTVSH------------P-NISYKYTC--YACDYHTLMSEDMKKHMRKHTGEKPYKCEY-   87 (134)
Q Consensus        26 ~~h~~~h~~~~~~~C~--~C~~~f~------------~-~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-   87 (134)
                      ..|+++|.++++|.|+  .|++.|.            + .+..+|.|  +.|++.|.+...|..|+++|.++++|.|++ 
T Consensus        61 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~  140 (190)
T 1tf6_A           61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHE  140 (190)
T ss_dssp             HHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSS
T ss_pred             HHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCC
Confidence            4589999999999999  8999998            3 45678999  999999999999999999999999999988 


Q ss_pred             -cCccccCchhHHHHhhhcCCCCCeecCc---ChhhhcCHHHHHHHHHhcC
Q psy3507          88 -CAYSCTQSSALKIHERKHTGDKPYICQQ---CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        88 -C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~F~~~~~l~~H~~~H~  134 (134)
                       |++.|.+...|..|+++|++   |.|..   |++.|.+...|..|+++|+
T Consensus       141 ~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          141 GCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             SCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC
T ss_pred             CCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhc
Confidence             99999999999999999998   99999   9999999999999999985

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.92  E-value=1.3e-25  Score=136.79  Aligned_cols=101  Identities=29%  Similarity=0.637  Sum_probs=91.9

Q ss_pred             CCccccCC--CCCCccc----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc--cCccccCchhHH
Q psy3507          34 EELMYHCK--TCSTVSH----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALK   99 (134)
Q Consensus        34 ~~~~~~C~--~C~~~f~----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~   99 (134)
                      ++++|.|+  .|++.|.          ..+..+|.|+.|++.|.....|..|+++|.++++|.|++  |++.|.+...|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            35689998  8999998          226788999999999999999999999999999999986  999999999999


Q ss_pred             HHhhhcCCCCCeecC--cChhhhcCHHHHHHHHHhcC
Q psy3507         100 IHERKHTGDKPYICQ--QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       100 ~H~~~h~~~~~~~C~--~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .|+++|.++++|.|+  .|++.|.+...|.+|+++|+
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            999999999999996  59999999999999999985

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.92  E-value=5.7e-25  Score=138.69  Aligned_cols=104  Identities=28%  Similarity=0.494  Sum_probs=94.7

Q ss_pred             cCCCCccccCCCCCCccc------------CCCCcc--------eeeCCCCCccCChHHHHHHHHHhcCCCceeccc--c
Q psy3507          31 PTAEELMYHCKTCSTVSH------------PNISYK--------YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--C   88 (134)
Q Consensus        31 ~h~~~~~~~C~~C~~~f~------------~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C   88 (134)
                      +...+.+|.|+.|++.|.            +.+..+        |.|+.|++.|.....|..|+++|.++++|.|++  |
T Consensus        19 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   98 (155)
T 2rpc_A           19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGC   98 (155)
T ss_dssp             CCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTT
T ss_pred             echhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCC
Confidence            355678899999999998            333332        799999999999999999999999999999998  9


Q ss_pred             CccccCchhHHHHhhhcCCCCCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507          89 AYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        89 ~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++.|.+...|..|+++|++++||.|..  |++.|.+...|.+|+++|+
T Consensus        99 ~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  146 (155)
T 2rpc_A           99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT  146 (155)
T ss_dssp             CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTT
T ss_pred             CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhc
Confidence            999999999999999999999999997  9999999999999999985

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.91  E-value=1.5e-24  Score=122.99  Aligned_cols=81  Identities=31%  Similarity=0.605  Sum_probs=78.8

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +|.|+.|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|.++++|.|+.|++.|.+...|.+|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q psy3507         134 G  134 (134)
Q Consensus       134 ~  134 (134)
                      +
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=3.1e-24  Score=125.22  Aligned_cols=85  Identities=35%  Similarity=0.620  Sum_probs=81.7

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHH
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNR  129 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H  129 (134)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|.++++|.|..|++.|.+...|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q psy3507         130 LQSHG  134 (134)
Q Consensus       130 ~~~H~  134 (134)
                      +++|+
T Consensus        84 ~~~h~   88 (96)
T 2dmd_A           84 LRSHT   88 (96)
T ss_dssp             HTTCC
T ss_pred             HHHhc
Confidence            99984

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.90  E-value=1.3e-23  Score=124.70  Aligned_cols=86  Identities=27%  Similarity=0.542  Sum_probs=81.9

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHH
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN  128 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~  128 (134)
                      ...+++|.|+.|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|.++++|.|..|++.|.+...|..
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q psy3507         129 RLQSHG  134 (134)
Q Consensus       129 H~~~H~  134 (134)
                      |+++|+
T Consensus        92 H~~~H~   97 (106)
T 2ee8_A           92 HKTLHM   97 (106)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            999984

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.90  E-value=3.8e-24  Score=123.39  Aligned_cols=84  Identities=32%  Similarity=0.682  Sum_probs=79.4

Q ss_pred             CCcceeeC--CCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHH
Q psy3507          51 ISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN  128 (134)
Q Consensus        51 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~  128 (134)
                      ++++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.+...|..|+++|++++||.|..|++.|.+...|.+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            35789998  5999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q psy3507         129 RLQSHG  134 (134)
Q Consensus       129 H~~~H~  134 (134)
                      |+++|+
T Consensus        81 H~~~H~   86 (90)
T 1a1h_A           81 HTKIHL   86 (90)
T ss_dssp             HHGGGG
T ss_pred             HHHHhc
Confidence            999984

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=2.3e-23  Score=121.24  Aligned_cols=85  Identities=31%  Similarity=0.602  Sum_probs=80.6

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCC--CCeecCcChhhhcCHHHHH
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD--KPYICQQCRDTFSSLYLFR  127 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~F~~~~~l~  127 (134)
                      .++.+|.|+.|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|+++  ++|.|..|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999987  8999999999999999999


Q ss_pred             HHHH-hcC
Q psy3507         128 NRLQ-SHG  134 (134)
Q Consensus       128 ~H~~-~H~  134 (134)
                      .|++ +|+
T Consensus        83 ~H~~~~H~   90 (95)
T 2yt9_A           83 GHIKQVHS   90 (95)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhcC
Confidence            9985 774

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.89  E-value=2.8e-23  Score=124.01  Aligned_cols=84  Identities=29%  Similarity=0.509  Sum_probs=80.8

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHH
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN  128 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~  128 (134)
                      +.++++|.| .|++.|.....|..|++.|.++++|.|++|++.|.+...|..|+++|.++++|.|..|++.|.....|.+
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHH
Confidence            567788999 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q psy3507         129 RLQSH  133 (134)
Q Consensus       129 H~~~H  133 (134)
                      |+++|
T Consensus        84 H~~~~   88 (110)
T 2csh_A           84 HVTSC   88 (110)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99987

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5e-23  Score=129.62  Aligned_cols=100  Identities=32%  Similarity=0.528  Sum_probs=90.9

Q ss_pred             CccccCCCCCCccc--------------CCCCcceeeCCC-----CCccCChHHHHHHHHHhcCCCceeccc--cCcccc
Q psy3507          35 ELMYHCKTCSTVSH--------------PNISYKYTCYAC-----DYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCT   93 (134)
Q Consensus        35 ~~~~~C~~C~~~f~--------------~~~~~~~~C~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~   93 (134)
                      +.+|.|+.|++.|.              +.++++|.|++|     ++.|.....|..|++.|.++++|.|++  |++.|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCS
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCccc
Confidence            45799999999998              456678888753     499999999999999999999999985  999999


Q ss_pred             CchhHHHHhhhcCCCCCeecCc--ChhhhcCHHHHHHHH-HhcC
Q psy3507          94 QSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNRL-QSHG  134 (134)
Q Consensus        94 ~~~~l~~H~~~h~~~~~~~C~~--C~~~F~~~~~l~~H~-~~H~  134 (134)
                      +...|..|+++|.+++||.|+.  |++.|.+...|..|+ ++|+
T Consensus        81 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           81 RLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             SHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            9999999999999999999998  999999999999998 7874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.88  E-value=9.3e-23  Score=117.25  Aligned_cols=83  Identities=37%  Similarity=0.708  Sum_probs=79.5

Q ss_pred             CcceeeCC--CCCccCChHHHHHHHHHhcCCCceecc--ccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHH
Q psy3507          52 SYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFR  127 (134)
Q Consensus        52 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~  127 (134)
                      ..+|.|+.  |++.|.....|..|++.|.++++|.|+  .|++.|.+...|..|+++|.++++|.|+.|++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            46799999  999999999999999999999999997  59999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q psy3507         128 NRLQSHG  134 (134)
Q Consensus       128 ~H~~~H~  134 (134)
                      .|+++|.
T Consensus        83 ~H~~~H~   89 (89)
T 2wbs_A           83 LHMKRHF   89 (89)
T ss_dssp             HHGGGGC
T ss_pred             HHHHhhC
Confidence            9999985

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.87  E-value=3.7e-22  Score=117.05  Aligned_cols=85  Identities=36%  Similarity=0.639  Sum_probs=80.1

Q ss_pred             CCCcceeeCC--CCCccCChHHHHHHHHHhcCCCceecc--ccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHH
Q psy3507          50 NISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYL  125 (134)
Q Consensus        50 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~  125 (134)
                      ...++|.|+.  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|+++|+++++|.|..|++.|.....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            3456799997  999999999999999999999999996  699999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy3507         126 FRNRLQSHG  134 (134)
Q Consensus       126 l~~H~~~H~  134 (134)
                      |..|+++|+
T Consensus        91 l~~H~~~H~   99 (100)
T 2ebt_A           91 LALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999985

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=6e-22  Score=119.52  Aligned_cols=85  Identities=34%  Similarity=0.718  Sum_probs=81.2

Q ss_pred             CCCcceeeCC--CCCccCChHHHHHHHHHhcCCCceecc--ccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHH
Q psy3507          50 NISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYL  125 (134)
Q Consensus        50 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~  125 (134)
                      .++++|.|++  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|+++|.++++|.|..|++.|.+...
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            4678999997  999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy3507         126 FRNRLQSHG  134 (134)
Q Consensus       126 l~~H~~~H~  134 (134)
                      |..|+++|+
T Consensus        82 l~~H~~~h~   90 (119)
T 2jp9_A           82 LKTHTRTHT   90 (119)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999883

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=3.7e-22  Score=118.65  Aligned_cols=83  Identities=20%  Similarity=0.333  Sum_probs=69.7

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHH
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN  128 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~  128 (134)
                      +.++++|.|++|++.|.....|..|+++|.  ++|.|++|++.|.....|..|++ |.+++||.|..|++.|.+...|.+
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~   87 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWR   87 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHH
Confidence            345566777778888888889999998884  68999999999999999999985 888899999999999999999999


Q ss_pred             HHH-hcC
Q psy3507         129 RLQ-SHG  134 (134)
Q Consensus       129 H~~-~H~  134 (134)
                      |++ +|+
T Consensus        88 H~~~~H~   94 (107)
T 1wjp_A           88 HQVEVHN   94 (107)
T ss_dssp             HHHHTSC
T ss_pred             HHHHHcC
Confidence            986 764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=120.82  Aligned_cols=84  Identities=18%  Similarity=0.232  Sum_probs=74.2

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHH--hcCCCcee-ccccCccc--cCchhHHHHhhhcCCCCCeecCcChhhhcCHHH
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRK--HTGEKPYK-CEYCAYSC--TQSSALKIHERKHTGDKPYICQQCRDTFSSLYL  125 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~-C~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~  125 (134)
                      ++++|.|+.|++.|.....|..|++.  |.+.+++. |++|++.|  .....|..|+++|++++||.|..|++.|.+...
T Consensus        16 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~   95 (115)
T 2dmi_A           16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQD   95 (115)
T ss_dssp             CCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHH
T ss_pred             CCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHH
Confidence            34556777777788899999999998  77777654 99999999  899999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy3507         126 FRNRLQSHG  134 (134)
Q Consensus       126 l~~H~~~H~  134 (134)
                      |.+|+++|.
T Consensus        96 L~~H~~~hh  104 (115)
T 2dmi_A           96 LSVHMIKTK  104 (115)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999998873

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=1.6e-21  Score=118.33  Aligned_cols=85  Identities=31%  Similarity=0.550  Sum_probs=80.4

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhh---cCCCCCeecCcChhhhcCHHHH
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK---HTGDKPYICQQCRDTFSSLYLF  126 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~F~~~~~l  126 (134)
                      .++.+|.|+.|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.   +.++++|.|+.|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            4678899999999999999999999999999999999999999999999999985   5788999999999999999999


Q ss_pred             HHHHHhcC
Q psy3507         127 RNRLQSHG  134 (134)
Q Consensus       127 ~~H~~~H~  134 (134)
                      ..|+++|+
T Consensus        83 ~~H~~~h~   90 (124)
T 2dlq_A           83 RLHMVSHT   90 (124)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcC
Confidence            99999884

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.85  E-value=6.5e-22  Score=105.87  Aligned_cols=58  Identities=21%  Similarity=0.430  Sum_probs=39.4

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      ++||.|++|++.|.....|..|+++|++++||.|++|++.|...+.|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4566777777777777777777767766667777777777777777777766666653

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.84  E-value=4e-22  Score=114.66  Aligned_cols=81  Identities=25%  Similarity=0.480  Sum_probs=76.5

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      +++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|++ .+|.|..|++.|.+...|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            46899999999999999999999999999999999999999999999999999885 78999999999999999999996


Q ss_pred             hc
Q psy3507         132 SH  133 (134)
Q Consensus       132 ~H  133 (134)
                      .+
T Consensus        80 ~~   81 (88)
T 1llm_C           80 RL   81 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.84  E-value=5.2e-21  Score=108.84  Aligned_cols=78  Identities=28%  Similarity=0.533  Sum_probs=75.0

Q ss_pred             ceee--CCCCCccCChHHHHHHHHHhcCCCceeccc--cCccccCchhHHHHhhhcCCCCCeecCc---ChhhhcCHHHH
Q psy3507          54 KYTC--YACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ---CRDTFSSLYLF  126 (134)
Q Consensus        54 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~F~~~~~l  126 (134)
                      +|.|  +.|++.|.....|..|+++|.++++|.|++  |++.|.+...|..|+++|++   |.|..   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5889  899999999999999999999999999988  99999999999999999988   99999   99999999999


Q ss_pred             HHHHHhcC
Q psy3507         127 RNRLQSHG  134 (134)
Q Consensus       127 ~~H~~~H~  134 (134)
                      .+|+++|+
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999985

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=5.7e-21  Score=120.28  Aligned_cols=89  Identities=29%  Similarity=0.385  Sum_probs=80.9

Q ss_pred             cccccc-CCCCcc--------ccCCCCCCccc-----------CCCCcceeeCC--CCCccCChHHHHHHHHHhcCCCce
Q psy3507          26 RLLLVP-TAEELM--------YHCKTCSTVSH-----------PNISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPY   83 (134)
Q Consensus        26 ~~h~~~-h~~~~~--------~~C~~C~~~f~-----------~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~   83 (134)
                      ..|++. |.++.+        |.|++|++.|.           +.++++|.|+.  |++.|.....|..|+++|.++++|
T Consensus        42 ~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~  121 (155)
T 2rpc_A           42 VTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF  121 (155)
T ss_dssp             HHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSB
T ss_pred             HHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCc
Confidence            447776 766654        89999999998           56778999998  999999999999999999999999


Q ss_pred             eccc--cCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          84 KCEY--CAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        84 ~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      .|++  |++.|.+...|..|+++|++++||.|.
T Consensus       122 ~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          122 KCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             cCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9997  999999999999999999999999985

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.83  E-value=7.1e-21  Score=101.81  Aligned_cols=55  Identities=29%  Similarity=0.676  Sum_probs=53.9

Q ss_pred             CCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+||.|++|++.|...+.|..|+++|++++||.|..||+.|...+.|.+|+++|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            7899999999999999999999999999999999999999999999999999995

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.83  E-value=1.7e-20  Score=114.00  Aligned_cols=81  Identities=31%  Similarity=0.589  Sum_probs=76.4

Q ss_pred             CcceeeC--CCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc--ChhhhcCHHHHH
Q psy3507          52 SYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFR  127 (134)
Q Consensus        52 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~F~~~~~l~  127 (134)
                      +++|.|+  .|++.|.+...|..|+++| ++++|.|++|++.|.+...|..|+++|.++++|.|..  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            5689999  8999999999999999999 8899999999999999999999999999999999986  999999999999


Q ss_pred             HHHHhc
Q psy3507         128 NRLQSH  133 (134)
Q Consensus       128 ~H~~~H  133 (134)
                      .|+++|
T Consensus        82 ~H~~~h   87 (124)
T 1ubd_C           82 THVRIH   87 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999987

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=2.5e-20  Score=110.39  Aligned_cols=82  Identities=24%  Similarity=0.454  Sum_probs=76.6

Q ss_pred             CCCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHH
Q psy3507          32 TAEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKI  100 (134)
Q Consensus        32 h~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  100 (134)
                      ...+++|.|++|++.|.           +.++++|.|++|++.|.....|..|+++|.++++|.|++|++.|.+...|..
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            45678899999999998           6777899999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCCCeec
Q psy3507         101 HERKHTGDKPYIC  113 (134)
Q Consensus       101 H~~~h~~~~~~~C  113 (134)
                      |+++|.+++||..
T Consensus        92 H~~~H~~~~~~~~  104 (106)
T 2ee8_A           92 HKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHTTSCCCCCC
T ss_pred             HHHHhCCCCCCcC
Confidence            9999999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.8e-20  Score=106.61  Aligned_cols=80  Identities=34%  Similarity=0.682  Sum_probs=74.2

Q ss_pred             CCCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHH
Q psy3507          32 TAEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKI  100 (134)
Q Consensus        32 h~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  100 (134)
                      +.++++|.|++|++.|.           +.++++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            46788999999999998           6677899999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCCCe
Q psy3507         101 HERKHTGDKPY  111 (134)
Q Consensus       101 H~~~h~~~~~~  111 (134)
                      |+++|+++++.
T Consensus        83 H~~~h~~~~~p   93 (96)
T 2dmd_A           83 HLRSHTGDSGP   93 (96)
T ss_dssp             HHTTCCSCCCC
T ss_pred             HHHHhcCCCCC
Confidence            99999988753

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=2.6e-20  Score=110.64  Aligned_cols=86  Identities=16%  Similarity=0.253  Sum_probs=78.1

Q ss_pred             ccccCCCCccccCCCCCCcccC---------CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhH
Q psy3507          28 LLVPTAEELMYHCKTCSTVSHP---------NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL   98 (134)
Q Consensus        28 h~~~h~~~~~~~C~~C~~~f~~---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   98 (134)
                      ++++|.++++|.|++|++.|..         .-.++|.|++|++.|.....|..|++ |.++++|.|++|++.|.....|
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            5788999999999999999981         11368999999999999999999996 9999999999999999999999


Q ss_pred             HHHhh-hcCCCCCeecC
Q psy3507          99 KIHER-KHTGDKPYICQ  114 (134)
Q Consensus        99 ~~H~~-~h~~~~~~~C~  114 (134)
                      ..|++ .|.++++|.+.
T Consensus        86 ~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           86 WRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHcCCCCCCCCC
Confidence            99997 89999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=3e-20  Score=104.50  Aligned_cols=72  Identities=22%  Similarity=0.393  Sum_probs=67.9

Q ss_pred             CCCcceeeCC--CCCccCChHHHHHHHH-HhcCCCceeccc--cCccccCchhHHHHhhhcCCCCCeecCcChhhhc
Q psy3507          50 NISYKYTCYA--CDYHTLMSEDMKKHMR-KHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS  121 (134)
Q Consensus        50 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~  121 (134)
                      .++++|.|..  |++.|.....|..|++ .|.++++|.|++  |++.|.+...|..|+++|++++||.|..|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            4667899987  9999999999999999 799999999999  9999999999999999999999999999999984

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.80  E-value=8.6e-20  Score=104.93  Aligned_cols=76  Identities=29%  Similarity=0.562  Sum_probs=68.4

Q ss_pred             CCccccCC--CCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHH
Q psy3507          34 EELMYHCK--TCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKI  100 (134)
Q Consensus        34 ~~~~~~C~--~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  100 (134)
                      ++++|.|+  .|++.|.           +.++.+|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            36789998  6999998           5677899999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCC
Q psy3507         101 HERKHTGDK  109 (134)
Q Consensus       101 H~~~h~~~~  109 (134)
                      |+++|++++
T Consensus        81 H~~~H~~~k   89 (90)
T 1a1h_A           81 HTKIHLRQK   89 (90)
T ss_dssp             HHGGGGC--
T ss_pred             HHHHhcccC
Confidence            999999875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.78  E-value=2.6e-19  Score=101.12  Aligned_cols=71  Identities=42%  Similarity=0.704  Sum_probs=66.3

Q ss_pred             cccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhc
Q psy3507          37 MYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        37 ~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      ||.|++|++.|.           +.++++|.|+.|++.|.....|..|++.|.++++|.|++|++.|.+...|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            589999999998           567789999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q psy3507         106 TG  107 (134)
Q Consensus       106 ~~  107 (134)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.78  E-value=1.6e-20  Score=115.00  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=80.4

Q ss_pred             ccCCCCccccCCCCCCccc------------CCCCcceeeCCCCCccC------ChHHHHHHHHHhcCCCceeccccCcc
Q psy3507          30 VPTAEELMYHCKTCSTVSH------------PNISYKYTCYACDYHTL------MSEDMKKHMRKHTGEKPYKCEYCAYS   91 (134)
Q Consensus        30 ~~h~~~~~~~C~~C~~~f~------------~~~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~C~~C~~~   91 (134)
                      ..+++.++|.|...+....            ....+.+.|++|.+.|.      ....|..|+ .|.+++||.|++|++.
T Consensus         5 ~~~~~~k~~~~~~k~~~~~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~   83 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMP   83 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCE
T ss_pred             hhcccccccccccCCeeeeecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcc
Confidence            3466677777765554322            11223466777665554      667777777 6888999999999999


Q ss_pred             ccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          92 CTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        92 f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |.....|..|+++|  ++||.|..|++.|.+...|.+|+++|+
T Consensus        84 f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           84 FSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             ESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             cCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            99999999999999  889999999999999999999999885

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=8.7e-19  Score=98.14  Aligned_cols=65  Identities=42%  Similarity=0.664  Sum_probs=60.5

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      ..++++|.|++|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|++++||.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            44567899999999999999999999999999999999999999999999999999999999987

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=2.1e-18  Score=100.08  Aligned_cols=77  Identities=25%  Similarity=0.534  Sum_probs=70.4

Q ss_pred             CCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCC--CceeccccCccccCchhHH
Q psy3507          33 AEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALK   99 (134)
Q Consensus        33 ~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~   99 (134)
                      +++++|.|++|++.|.           +.++++|.|+.|++.|.....|..|++.|.++  ++|.|++|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            5678899999999998           67788999999999999999999999999987  8999999999999999999


Q ss_pred             HHhh-hcCCCC
Q psy3507         100 IHER-KHTGDK  109 (134)
Q Consensus       100 ~H~~-~h~~~~  109 (134)
                      .|++ .|.++.
T Consensus        83 ~H~~~~H~~~~   93 (95)
T 2yt9_A           83 GHIKQVHSGPS   93 (95)
T ss_dssp             HHHHHTSCCCS
T ss_pred             HHHHHhcCCCC
Confidence            9986 687653

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=8.1e-20  Score=109.69  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             cccccCCCCccccCCCCCCccc-------------CCCCcc-eeeCCCCCcc--CChHHHHHHHHHhcCCCceeccccCc
Q psy3507          27 LLLVPTAEELMYHCKTCSTVSH-------------PNISYK-YTCYACDYHT--LMSEDMKKHMRKHTGEKPYKCEYCAY   90 (134)
Q Consensus        27 ~h~~~h~~~~~~~C~~C~~~f~-------------~~~~~~-~~C~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~~   90 (134)
                      .|+++|.++++|.|++|++.|.             +.+..+ +.|+.|++.|  .....|..|+++|.++++|.|++|++
T Consensus         9 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k   88 (115)
T 2dmi_A            9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGH   88 (115)
T ss_dssp             CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCC
T ss_pred             hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCC
Confidence            5899999999999999999998             222333 4599999999  89999999999999999999999999


Q ss_pred             cccCchhHHHHhhhcCCCCCeecC
Q psy3507          91 SCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        91 ~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      .|.....|..|++.|........+
T Consensus        89 ~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           89 SFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             BCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             ccCCHHHHHHHHHHhCCcccCCCC
Confidence            999999999999998776555443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1e-18  Score=102.04  Aligned_cols=73  Identities=14%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             CCccCChHHHHHHHHHhcCCCceeccccCccc-cCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHH-HHhcC
Q psy3507          61 DYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC-TQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNR-LQSHG  134 (134)
Q Consensus        61 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H-~~~H~  134 (134)
                      ...|.....|..|++.+.++++|.|++|++.| .+...|..|+++| +++||.|.+|++.|.....|..| +++|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            44677888899999999999999999999999 9999999999999 99999999999999999999999 88885

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.8e-18  Score=101.83  Aligned_cols=69  Identities=20%  Similarity=0.423  Sum_probs=63.1

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHH-Hh---cCCCceeccccCccccCchhHHHH-hhhcCCCCCeecCcCh
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMR-KH---TGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDKPYICQQCR  117 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~  117 (134)
                      ..++++|.|+.|++.|.....|..|++ .|   .+++||.|++|++.|...+.|..| +++|++++||.|..+.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            357789999999999999999999998 58   568999999999999999999999 8999999999998754

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=2e-18  Score=102.79  Aligned_cols=77  Identities=26%  Similarity=0.472  Sum_probs=71.6

Q ss_pred             ccCCCCccccCCCCCCccc-----------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhH
Q psy3507          30 VPTAEELMYHCKTCSTVSH-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL   98 (134)
Q Consensus        30 ~~h~~~~~~~C~~C~~~f~-----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   98 (134)
                      ..|+++++|.| .|++.|.           +.++++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.....|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHH
Confidence            46889999999 9999998           66778999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCC
Q psy3507          99 KIHERKHTG  107 (134)
Q Consensus        99 ~~H~~~h~~  107 (134)
                      ..|++.|..
T Consensus        82 ~~H~~~~~~   90 (110)
T 2csh_A           82 HRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHccc
Confidence            999998753

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=1.6e-19  Score=105.77  Aligned_cols=72  Identities=17%  Similarity=0.188  Sum_probs=55.6

Q ss_pred             ccCChHHHHHHHHHhcCCCceeccccCcccc-CchhHHHHhhhcCC-CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          63 HTLMSEDMKKHMRKHTGEKPYKCEYCAYSCT-QSSALKIHERKHTG-DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        63 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .+.....+..|+++|.++++|.|++|++.|. ....|..|+++|++ +++|.|..|++.|.+...|.+|+++|+
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHc
Confidence            3444555677778888888888888888888 88888888888777 778888888888888888888887763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.74  E-value=5.6e-18  Score=94.12  Aligned_cols=63  Identities=35%  Similarity=0.741  Sum_probs=51.6

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCe
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY  111 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  111 (134)
                      ..++++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            345667888888888888888888888888888888888888888888888888888888775

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=3.1e-18  Score=94.74  Aligned_cols=58  Identities=43%  Similarity=0.768  Sum_probs=40.8

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +|.++++|.|++|++.|.....|..|+++|.+++||.|..|++.|.+...|.+|+++|
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            4666667777777777777777777777777777777777777777777777777666

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.6e-17  Score=94.55  Aligned_cols=69  Identities=14%  Similarity=0.320  Sum_probs=60.6

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCC----CceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhh
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGE----KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF  120 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F  120 (134)
                      +++|.|++|++.|.....|..|++.+...    ++|.|++|++.|.....|..|+++|++++++.|..|+..|
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            34566677777888999999999887765    7899999999999999999999999999999999999865

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.71  E-value=5.6e-18  Score=89.39  Aligned_cols=54  Identities=33%  Similarity=0.645  Sum_probs=34.4

Q ss_pred             CCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      +++|.|++|++.|.+...|..|+++|++++||.|+.|++.|.....|..|+++|
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH   55 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHh
Confidence            456666666666666666666666666666666666666666666666666665

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=1.2e-17  Score=95.24  Aligned_cols=58  Identities=19%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHh-hhcCCC
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE-RKHTGD  108 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~  108 (134)
                      ..++|.|++|++.|.....|..|+++|++++||.|++|++.|.+...|..|+ +.|++|
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            3345566666666666666666666665666666666666666666666664 335443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.2e-18  Score=96.50  Aligned_cols=63  Identities=32%  Similarity=0.583  Sum_probs=45.9

Q ss_pred             HHHHHHhcCCCceeccccCccccCchhHHHHhh-hcCCC-CCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          71 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHER-KHTGD-KPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        71 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      ..|+++|.++++|.|++|++.|.....|..|++ .|.++ ++|.|+.|++.|.+...|..|+++|
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~   68 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ   68 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHh
Confidence            346667777777777777777777777777775 46653 6777777777777777777777664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.2e-17  Score=90.73  Aligned_cols=63  Identities=29%  Similarity=0.604  Sum_probs=43.9

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCe
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY  111 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  111 (134)
                      +.++++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|++++|.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            345566777777777777777777777777777777777777777777777777776666553

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=6.7e-18  Score=91.72  Aligned_cols=60  Identities=23%  Similarity=0.385  Sum_probs=49.7

Q ss_pred             HHhcCCCceeccccCccccCchhHHHHhhh-c-CCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          75 RKHTGEKPYKCEYCAYSCTQSSALKIHERK-H-TGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        75 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++|.++++|.|++|++.|.+...|..|++. | .+++||.|+.|++.|.+...|..|+++|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            357778888888888888888888888887 6 57888888888888888888888887763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=2.3e-17  Score=91.59  Aligned_cols=59  Identities=32%  Similarity=0.658  Sum_probs=56.3

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .+.++++|.|++|++.|.....|..|+++|.++++|.|..|++.|.....|.+|+++|+
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcC
Confidence            46678999999999999999999999999999999999999999999999999999985

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.69  E-value=7e-17  Score=92.41  Aligned_cols=72  Identities=26%  Similarity=0.650  Sum_probs=66.3

Q ss_pred             CccccCCC--CCCccc-----------CCCCcceeeC--CCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHH
Q psy3507          35 ELMYHCKT--CSTVSH-----------PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALK   99 (134)
Q Consensus        35 ~~~~~C~~--C~~~f~-----------~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   99 (134)
                      ..+|.|+.  |++.|.           +.++.+|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            46799998  999997           6777899997  59999999999999999999999999999999999999999


Q ss_pred             HHhhhcC
Q psy3507         100 IHERKHT  106 (134)
Q Consensus       100 ~H~~~h~  106 (134)
                      .|+++|.
T Consensus        83 ~H~~~H~   89 (89)
T 2wbs_A           83 LHMKRHF   89 (89)
T ss_dssp             HHGGGGC
T ss_pred             HHHHhhC
Confidence            9999873

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.69  E-value=8.9e-17  Score=93.88  Aligned_cols=75  Identities=31%  Similarity=0.689  Sum_probs=67.9

Q ss_pred             CCCccccCCC--CCCccc-----------CCCCcceeeC--CCCCccCChHHHHHHHHHhcCCCceeccccCccccCchh
Q psy3507          33 AEELMYHCKT--CSTVSH-----------PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSA   97 (134)
Q Consensus        33 ~~~~~~~C~~--C~~~f~-----------~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   97 (134)
                      ...++|.|+.  |++.|.           +.++++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            3456799986  999997           6777899996  699999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCC
Q psy3507          98 LKIHERKHTG  107 (134)
Q Consensus        98 l~~H~~~h~~  107 (134)
                      |..|+++|.+
T Consensus        91 l~~H~~~H~~  100 (100)
T 2ebt_A           91 LALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999999864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=4e-17  Score=89.67  Aligned_cols=58  Identities=31%  Similarity=0.678  Sum_probs=55.5

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|..|++.|.....|.+|+++|
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h   60 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF   60 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=7.8e-18  Score=95.83  Aligned_cols=65  Identities=26%  Similarity=0.553  Sum_probs=59.9

Q ss_pred             HHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCC----CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          70 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD----KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        70 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |..|+++|.++++|.|++|++.|.....|..|++.++++    ++|.|..|++.|.....|..|+++|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHcc
Confidence            456888999999999999999999999999999887665    78999999999999999999999984

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.68  E-value=4.9e-17  Score=85.71  Aligned_cols=56  Identities=34%  Similarity=0.706  Sum_probs=34.5

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      +|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            35566666666666666666666666666666666666666666666666655543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=5.9e-17  Score=90.60  Aligned_cols=59  Identities=34%  Similarity=0.685  Sum_probs=55.8

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .+.++++|.|++|++.|.....|..|+++|.+++||.|..|++.|.....|.+|+++|+
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhC
Confidence            35578899999999999999999999999999999999999999999999999999985

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.3e-16  Score=88.10  Aligned_cols=61  Identities=38%  Similarity=0.569  Sum_probs=56.3

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|+++.
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            5567788899999999999999999999999999999999999999999999999998764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.66  E-value=1.3e-16  Score=84.04  Aligned_cols=57  Identities=37%  Similarity=0.702  Sum_probs=50.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCC
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999999999999999999998763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.66  E-value=1.7e-16  Score=90.41  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=54.8

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHH-HhcC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRL-QSHG  134 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~-~~H~  134 (134)
                      .+...++|.|++|++.|.+...|..|+++|++++||.|..|++.|.+...|.+|+ ++|+
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            4667788999999999999999999999999999999999999999999999997 5674

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=6.1e-17  Score=89.54  Aligned_cols=59  Identities=31%  Similarity=0.614  Sum_probs=53.9

Q ss_pred             HhcCCCceecc--ccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          76 KHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        76 ~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++.++++|.|+  .|++.|.....|..|+++|.+++||.|..|++.|.+...|.+|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            46788899997  599999999999999999999999999999999999999999999986

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.65  E-value=2.5e-16  Score=82.91  Aligned_cols=53  Identities=32%  Similarity=0.602  Sum_probs=51.2

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ||.|++|++.|.+...|..|+++|.+++||.|+.|++.|.+...|.+|+++|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999984

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.6e-16  Score=84.62  Aligned_cols=54  Identities=35%  Similarity=0.714  Sum_probs=31.5

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHh-hhcCC
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE-RKHTG  107 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~  107 (134)
                      +|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..|+ +.|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            4556666666666666666666665555566666666666666666664 34544

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1e-16  Score=89.73  Aligned_cols=65  Identities=18%  Similarity=0.365  Sum_probs=52.1

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcC---CCceeccccCccccCchhHHHHh-hhcCCCCCeec
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTG---EKPYKCEYCAYSCTQSSALKIHE-RKHTGDKPYIC  113 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C  113 (134)
                      +.++++|.|++|++.|.....|..|+++|.+   +++|.|++|++.|.....|..|+ +.|.++++..-
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            4567888888888888888888888888875   78888888888888888888887 45776666543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=6.2e-16  Score=89.52  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHH-hcCCCc--------eeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRK-HTGEKP--------YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      ...++|+.|++.|.....|..|++. |.++++        |.|++|++.|.+...|..|+++|++++||.|..
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3467899999999999999999998 888877        999999999999999999999999999999963

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.2e-16  Score=92.27  Aligned_cols=63  Identities=22%  Similarity=0.339  Sum_probs=54.5

Q ss_pred             CCcceeeCCCCCccC-ChHHHHHHHHHhcC-CCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          51 ISYKYTCYACDYHTL-MSEDMKKHMRKHTG-EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      ++++|.|++|++.|. ....|..|+++|.+ +++|.|++|++.|.....|..|+++|++++|..-
T Consensus        21 ~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A           21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             TTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             cCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            344566666777788 88999999999998 8999999999999999999999999999988654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.2e-15  Score=88.87  Aligned_cols=63  Identities=19%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CCCcceeeCCCCCcc-CChHHHHHHHHHhcCCCceeccccCccccCchhHHHH-hhhcCCCCCeec
Q psy3507          50 NISYKYTCYACDYHT-LMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDKPYIC  113 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C  113 (134)
                      .++++|.|+.|++.| .....|..|+++| ++++|.|++|++.|.....|..| +++|+++..|.+
T Consensus        30 ~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           30 VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             HHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             cCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            345678999999999 9999999999999 99999999999999999999999 888987655543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=84.79  Aligned_cols=58  Identities=28%  Similarity=0.618  Sum_probs=53.8

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCC---CCCeecCcChhhhcCHHHHHHHHH-hc
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTG---DKPYICQQCRDTFSSLYLFRNRLQ-SH  133 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~F~~~~~l~~H~~-~H  133 (134)
                      +|.++++|.|++|++.|.....|..|+++|.+   +++|.|..|++.|.....|.+|++ .|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            37789999999999999999999999999986   899999999999999999999994 44

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=1.1e-15  Score=82.87  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=53.4

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHH-h-cCCCceeccccCccccCchhHHHHhhhcCC
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRK-H-TGEKPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      +.++++|.|+.|++.|.....|..|++. | .++++|.|++|++.|.+...|..|++.+++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4567789999999999999999999998 7 588999999999999999999999998775

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=8.2e-16  Score=90.45  Aligned_cols=57  Identities=21%  Similarity=0.522  Sum_probs=53.0

Q ss_pred             cCCCceeccccCccccCchhHHHHhh-hc---CCCCCeecCcChhhhcCHHHHHHH-HHhcC
Q psy3507          78 TGEKPYKCEYCAYSCTQSSALKIHER-KH---TGDKPYICQQCRDTFSSLYLFRNR-LQSHG  134 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~F~~~~~l~~H-~~~H~  134 (134)
                      .+++||.|+.|++.|...+.|..|++ .|   .+++||.|..||+.|.....|..| +++|+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC
Confidence            57899999999999999999999997 58   668999999999999999999999 88885

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=2e-15  Score=80.21  Aligned_cols=54  Identities=31%  Similarity=0.661  Sum_probs=51.1

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHH-HhcC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRL-QSHG  134 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~-~~H~  134 (134)
                      +||.|++|++.|.+...|..|+++|++++||.|+.|++.|.+...|.+|+ ++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            47999999999999999999999999999999999999999999999997 6774

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.1e-16  Score=88.20  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             cccccCCCCccccCCCCCCcccCCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcC
Q psy3507          27 LLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        27 ~h~~~h~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      .|+++|.++++|.|++|++.|........                        +++|.|++|++.|.....|..|+++|+
T Consensus         8 ~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------------------------~~~~~C~~C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A            8 KRQKIHLGDRSQKCSKCGIIFIRRSTLSR------------------------RKTPMCEKCRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             CCCCCCCCCSEEECSSSCCEEECCCCCCC------------------------SSSCCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred             HHHHHhCCCCCeeCCcccchhCCHHHhCc------------------------CCCCCCCCCChhhcCHHHHHHHHHhhc
Confidence            58889999999999999998875544322                        578999999999999999999999999


Q ss_pred             CCCCeecCcC
Q psy3507         107 GDKPYICQQC  116 (134)
Q Consensus       107 ~~~~~~C~~C  116 (134)
                      +++||.|+.|
T Consensus        64 ~~~~~~C~~C   73 (73)
T 2ctu_A           64 GKKTSGPSSG   73 (73)
T ss_dssp             CCCCSSCCCC
T ss_pred             CCCCCCCCCC
Confidence            9999999987

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.59  E-value=9.2e-16  Score=87.77  Aligned_cols=55  Identities=29%  Similarity=0.626  Sum_probs=52.6

Q ss_pred             CCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||.|++|++.|.+...|..|+++|.+++||.|+.|++.|.+...|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC
Confidence            4789999999999999999999999999999999999999999999999998874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.59  E-value=1.9e-15  Score=85.52  Aligned_cols=67  Identities=24%  Similarity=0.570  Sum_probs=61.9

Q ss_pred             cccC--CCCCCccc-----------CCCCcceeeCC--CCCccCChHHHHHHHHHhcCCCceeccc---cCccccCchhH
Q psy3507          37 MYHC--KTCSTVSH-----------PNISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEY---CAYSCTQSSAL   98 (134)
Q Consensus        37 ~~~C--~~C~~~f~-----------~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l   98 (134)
                      ||.|  +.|++.|.           +.++++|.|+.  |++.|.....|..|+++|.+   |.|+.   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5889  99999998           66778999988  99999999999999999987   99999   99999999999


Q ss_pred             HHHhhhcC
Q psy3507          99 KIHERKHT  106 (134)
Q Consensus        99 ~~H~~~h~  106 (134)
                      ..|+++|+
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99998864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-15  Score=82.74  Aligned_cols=57  Identities=14%  Similarity=0.273  Sum_probs=42.1

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCCCceecc-ccCccccCchhHHHHhhhcCCCCC
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE-YCAYSCTQSSALKIHERKHTGDKP  110 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~~~  110 (134)
                      .++|.|+.|++.|. ...|..|+++ .+++||.|+ .|++.|...+.|..|+++|...+|
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            45677777777777 7777777777 777777777 777777777777777777765544

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.8e-14  Score=80.32  Aligned_cols=60  Identities=32%  Similarity=0.546  Sum_probs=48.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHH-HhcCC-CceeccccCccccCchhHHHHhhhc-CCCCC
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMR-KHTGE-KPYKCEYCAYSCTQSSALKIHERKH-TGDKP  110 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~~  110 (134)
                      ++++|.|++|++.|.....|..|++ .|.++ ++|.|++|++.|.....|..|++.+ ..+.|
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3445666677778889999999997 67764 8999999999999999999999974 44444

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.54  E-value=6e-15  Score=81.22  Aligned_cols=56  Identities=30%  Similarity=0.590  Sum_probs=41.9

Q ss_pred             cCCCceeccc--cCccccCchhHHHHhhhcCCCCCeecCc--ChhhhcCHHHHHHHHHhc
Q psy3507          78 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        78 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H  133 (134)
                      ...++|.|+.  |++.|.....|..|+++|++++||.|..  |++.|.....|.+|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3456677776  7777777777777777777777777754  888888888888887766

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.1e-14  Score=80.30  Aligned_cols=58  Identities=34%  Similarity=0.702  Sum_probs=53.2

Q ss_pred             CCCCcceeeC--CCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcC
Q psy3507          49 PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        49 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      +.++++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            4566788997  599999999999999999999999999999999999999999999874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=78.68  Aligned_cols=54  Identities=19%  Similarity=0.404  Sum_probs=51.4

Q ss_pred             cCCCceeccccCccccCchhHHHHhhhcCCCCCeecC-cChhhhcCHHHHHHHHHhc
Q psy3507          78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ-QCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~F~~~~~l~~H~~~H  133 (134)
                      .++++|.|+.|++.|. ...|..|+++ ++++||.|+ .||+.|..++.|..|+++|
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            4678999999999999 9999999999 999999999 9999999999999999998

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.5e-14  Score=80.81  Aligned_cols=57  Identities=19%  Similarity=0.574  Sum_probs=53.3

Q ss_pred             cCCCceeccc--cCccccCchhHHHHhh-hcCCCCCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507          78 TGEKPYKCEY--CAYSCTQSSALKIHER-KHTGDKPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        78 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +++++|.|+.  |++.|.+...|..|++ .|.++++|.|..  |++.|.+...|.+|+++|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~   64 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS   64 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhC
Confidence            4678899997  9999999999999999 799999999999  9999999999999999883

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.8e-15  Score=73.88  Aligned_cols=44  Identities=41%  Similarity=0.563  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            56778899999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.8e-15  Score=73.90  Aligned_cols=44  Identities=32%  Similarity=0.529  Sum_probs=40.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.8e-15  Score=73.86  Aligned_cols=44  Identities=34%  Similarity=0.634  Sum_probs=40.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            66778899999999999999999999999999999999999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.7e-15  Score=73.43  Aligned_cols=44  Identities=27%  Similarity=0.511  Sum_probs=37.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45568888889999999999999999999888888889988876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.48  E-value=7.9e-15  Score=73.89  Aligned_cols=44  Identities=39%  Similarity=0.628  Sum_probs=39.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.48  E-value=8.2e-15  Score=73.75  Aligned_cols=45  Identities=38%  Similarity=0.545  Sum_probs=41.1

Q ss_pred             HHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        72 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      .|+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366788999999999999999999999999999999999999887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.8e-15  Score=73.86  Aligned_cols=44  Identities=41%  Similarity=0.595  Sum_probs=40.4

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.48  E-value=8.2e-15  Score=73.78  Aligned_cols=44  Identities=32%  Similarity=0.560  Sum_probs=40.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|...+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            66788899999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.2e-14  Score=73.17  Aligned_cols=45  Identities=38%  Similarity=0.623  Sum_probs=41.0

Q ss_pred             HHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        72 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      .|+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            366788999999999999999999999999999999999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7.8e-15  Score=73.83  Aligned_cols=44  Identities=41%  Similarity=0.548  Sum_probs=39.3

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888999999999999999999999999999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1e-14  Score=73.45  Aligned_cols=44  Identities=39%  Similarity=0.526  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1e-14  Score=73.39  Aligned_cols=44  Identities=41%  Similarity=0.667  Sum_probs=39.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66778899999999999999999999999999999999999877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=8.6e-15  Score=73.68  Aligned_cols=44  Identities=36%  Similarity=0.545  Sum_probs=39.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            56678888999999999999999999999999999999999877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.47  E-value=1.1e-14  Score=73.24  Aligned_cols=44  Identities=39%  Similarity=0.577  Sum_probs=40.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66788999999999999999999999999999999999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.3e-14  Score=73.10  Aligned_cols=45  Identities=36%  Similarity=0.456  Sum_probs=40.2

Q ss_pred             HHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        72 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      .|+++|.++++|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366788899999999999999999999999999999999999876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.2e-14  Score=73.12  Aligned_cols=45  Identities=42%  Similarity=0.638  Sum_probs=41.4

Q ss_pred             HHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        72 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      .|+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=8.6e-15  Score=73.68  Aligned_cols=44  Identities=45%  Similarity=0.588  Sum_probs=39.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66778889999999999999999999999999999999999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1e-14  Score=73.48  Aligned_cols=44  Identities=32%  Similarity=0.489  Sum_probs=39.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1e-14  Score=73.47  Aligned_cols=44  Identities=39%  Similarity=0.548  Sum_probs=39.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.5e-15  Score=73.55  Aligned_cols=44  Identities=34%  Similarity=0.534  Sum_probs=39.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778889999999999999999999999999999999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.2e-14  Score=73.18  Aligned_cols=44  Identities=34%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778899999999999999999999999999999999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.3e-15  Score=73.58  Aligned_cols=44  Identities=41%  Similarity=0.590  Sum_probs=41.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.47  E-value=9.6e-15  Score=73.53  Aligned_cols=44  Identities=36%  Similarity=0.550  Sum_probs=39.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66778899999999999999999999999999999999999877

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.46  E-value=8.7e-15  Score=73.73  Aligned_cols=44  Identities=39%  Similarity=0.622  Sum_probs=38.4

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|...+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678888899999999999999999999989999999998876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=8.8e-15  Score=73.70  Aligned_cols=45  Identities=29%  Similarity=0.384  Sum_probs=40.7

Q ss_pred             HHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        72 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      +|+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366788899999999999999999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=9.1e-15  Score=73.63  Aligned_cols=44  Identities=32%  Similarity=0.557  Sum_probs=38.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678888899999999999999999999999999999999877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.1e-14  Score=73.34  Aligned_cols=44  Identities=41%  Similarity=0.588  Sum_probs=38.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678888899999999999999999999989999999999877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.1e-14  Score=73.31  Aligned_cols=44  Identities=34%  Similarity=0.545  Sum_probs=38.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            56678888999999999999999999999999999999999877

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.1e-14  Score=73.27  Aligned_cols=44  Identities=36%  Similarity=0.571  Sum_probs=39.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1e-14  Score=73.43  Aligned_cols=44  Identities=36%  Similarity=0.515  Sum_probs=38.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678888899999999999999999999999999999999877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.1e-14  Score=73.34  Aligned_cols=44  Identities=36%  Similarity=0.531  Sum_probs=40.0

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66778899999999999999999999999999999999999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-14  Score=73.28  Aligned_cols=44  Identities=32%  Similarity=0.419  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778899999999999999999999999999999999999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.46  E-value=4.6e-14  Score=73.50  Aligned_cols=46  Identities=30%  Similarity=0.496  Sum_probs=32.9

Q ss_pred             hcCCCceeccccCccccCchhHHHHhh-hcCCCCCeecCcChhhhcC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHER-KHTGDKPYICQQCRDTFSS  122 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~F~~  122 (134)
                      |.++++|.|++|++.|.....|..|++ +|.+++||.|..|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            455667777777777777777777765 6777777777777777754

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1e-14  Score=73.39  Aligned_cols=44  Identities=43%  Similarity=0.582  Sum_probs=38.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            56678888899999999999999999999999999999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.4e-15  Score=73.75  Aligned_cols=44  Identities=34%  Similarity=0.494  Sum_probs=38.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|...+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678888889999999999999999999888888889988876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1e-14  Score=73.35  Aligned_cols=44  Identities=43%  Similarity=0.650  Sum_probs=39.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66778899999999999999999999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.9e-15  Score=73.65  Aligned_cols=44  Identities=45%  Similarity=0.607  Sum_probs=39.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.5e-14  Score=72.78  Aligned_cols=44  Identities=34%  Similarity=0.547  Sum_probs=38.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55678888999999999999999999999999999999999877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=8.3e-15  Score=73.79  Aligned_cols=44  Identities=25%  Similarity=0.384  Sum_probs=38.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56678888899999999999999999999888988999998876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-14  Score=72.90  Aligned_cols=44  Identities=23%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678888899999999999999999999999999999999877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.45  E-value=1.9e-14  Score=72.47  Aligned_cols=44  Identities=32%  Similarity=0.486  Sum_probs=39.4

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45678889999999999999999999999999999999999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.1e-14  Score=73.31  Aligned_cols=44  Identities=36%  Similarity=0.625  Sum_probs=39.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=9.4e-15  Score=73.56  Aligned_cols=44  Identities=36%  Similarity=0.566  Sum_probs=38.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678888889999999999999999999888888889988876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.4e-14  Score=72.92  Aligned_cols=44  Identities=39%  Similarity=0.631  Sum_probs=38.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            56678888889999999999999999999888998899998876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=2.1e-14  Score=72.22  Aligned_cols=44  Identities=39%  Similarity=0.597  Sum_probs=39.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999865

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=74.68  Aligned_cols=57  Identities=33%  Similarity=0.648  Sum_probs=51.8

Q ss_pred             CCCCcceeeCC--CCCccCChHHHHHHHHHhcCCCceeccc--cCccccCchhHHHHhhhc
Q psy3507          49 PNISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH  105 (134)
Q Consensus        49 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  105 (134)
                      ....++|.|..  |++.|.....|..|+++|.++++|.|++  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            44567899988  9999999999999999999999999965  999999999999998875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.3e-14  Score=73.13  Aligned_cols=44  Identities=36%  Similarity=0.550  Sum_probs=35.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45567788888888888888888888888888888888888776

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.43  E-value=8.2e-14  Score=84.87  Aligned_cols=73  Identities=21%  Similarity=0.250  Sum_probs=64.8

Q ss_pred             CCccccCCCCCCccc----------------CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchh
Q psy3507          34 EELMYHCKTCSTVSH----------------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSA   97 (134)
Q Consensus        34 ~~~~~~C~~C~~~f~----------------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   97 (134)
                      .++.+.|++|++.|.                +.++++|.|+.|++.|.....|..|+++|  ++||.|++|++.|.....
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~  115 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDS  115 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHH
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHH
Confidence            456688888876655                55678999999999999999999999999  789999999999999999


Q ss_pred             HHHHhhhcCCC
Q psy3507          98 LKIHERKHTGD  108 (134)
Q Consensus        98 l~~H~~~h~~~  108 (134)
                      |..|+++|++.
T Consensus       116 l~~H~~~h~~~  126 (129)
T 2wbt_A          116 ALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHCCc
Confidence            99999999875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.8e-14  Score=72.54  Aligned_cols=44  Identities=34%  Similarity=0.514  Sum_probs=36.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45567788888888888888888888888888888888888876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=2.7e-14  Score=72.09  Aligned_cols=44  Identities=36%  Similarity=0.517  Sum_probs=39.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhh-hcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHER-KHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|++ +|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5667888999999999999999999999998 8999999999887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=4.3e-14  Score=71.12  Aligned_cols=44  Identities=36%  Similarity=0.544  Sum_probs=37.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678888889999999999999999999888999999988764

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.39  E-value=7.4e-14  Score=68.80  Aligned_cols=42  Identities=26%  Similarity=0.537  Sum_probs=36.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            456788889999999999999999999999999999999884

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.39  E-value=2.3e-13  Score=69.02  Aligned_cols=42  Identities=26%  Similarity=0.460  Sum_probs=33.2

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChh
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD  118 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  118 (134)
                      +.++++|.|++|++.|.....|..|+++|++++||.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            456677888888888888888888888888888888888874

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.38  E-value=6.1e-14  Score=73.01  Aligned_cols=52  Identities=21%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             CCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCee
Q psy3507          61 DYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYI  112 (134)
Q Consensus        61 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  112 (134)
                      ++.|.....|..|+++|.++++|.|++|++.|...+.|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            3567777777888888888888888888888888888888888888888763

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3.3e-13  Score=77.87  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             ceeccccCccccCchhHHHHhhh-cCCCCC--------eecCcChhhhcCHHHHHHHHHhcC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERK-HTGDKP--------YICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .+.|++|++.|.....|..|+++ |.++++        |.|..|++.|.....|.+|+++|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~   86 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT   86 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC
Confidence            46899999999999999999998 999887        999999999999999999999984

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1e-13  Score=68.30  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=35.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            345678888888888888888888888888888888888874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=6.6e-13  Score=69.04  Aligned_cols=46  Identities=22%  Similarity=0.493  Sum_probs=42.4

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHH-HhcCCCceeccccCccccC
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCEYCAYSCTQ   94 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~   94 (134)
                      +.++++|.|++|++.|.....|..|++ +|.++++|.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            456788999999999999999999997 8999999999999999976

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.37  E-value=9.6e-14  Score=69.81  Aligned_cols=43  Identities=42%  Similarity=0.631  Sum_probs=37.3

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888889999999999999999999999999999998864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1e-13  Score=69.68  Aligned_cols=43  Identities=35%  Similarity=0.591  Sum_probs=36.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667888888999999999999999999988899888988864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.37  E-value=3.6e-15  Score=80.04  Aligned_cols=53  Identities=17%  Similarity=0.275  Sum_probs=42.4

Q ss_pred             HHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHH
Q psy3507          71 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF  126 (134)
Q Consensus        71 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l  126 (134)
                      ..|+++|.+++||.|+.|++.|.....|.   ++|++++||.|..||+.|....++
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            34667788888899999999888877775   778888899999999888765543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.1e-13  Score=69.58  Aligned_cols=43  Identities=44%  Similarity=0.600  Sum_probs=38.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999874

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.3e-13  Score=69.27  Aligned_cols=43  Identities=44%  Similarity=0.617  Sum_probs=38.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            5677889999999999999999999999999999999999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.2e-13  Score=69.49  Aligned_cols=43  Identities=35%  Similarity=0.593  Sum_probs=38.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.2e-13  Score=69.37  Aligned_cols=43  Identities=40%  Similarity=0.636  Sum_probs=38.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5677889999999999999999999999999999999999864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.2e-13  Score=69.38  Aligned_cols=43  Identities=40%  Similarity=0.661  Sum_probs=37.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667888889999999999999999999998999999998864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.36  E-value=2.6e-13  Score=67.84  Aligned_cols=42  Identities=26%  Similarity=0.522  Sum_probs=29.4

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcCh
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCR  117 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  117 (134)
                      +|.++++|.|++|++.|.....|..|+++|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            356666777777777777777777777777777777777664

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.2e-13  Score=69.38  Aligned_cols=43  Identities=40%  Similarity=0.675  Sum_probs=36.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888999999999999899999988888888888864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.3e-13  Score=69.22  Aligned_cols=43  Identities=37%  Similarity=0.641  Sum_probs=37.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888899999999999999999999999999999998864

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.1e-16  Score=87.10  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        67 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ...|..|+++|.++++|.|++|++.|.....|..       +++|.|+.|++.|.+...|..|+++|+
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhc
Confidence            3456778889999999999999999999988776       789999999999999999999999884

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.3e-13  Score=69.32  Aligned_cols=42  Identities=45%  Similarity=0.737  Sum_probs=36.0

Q ss_pred             HHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        75 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      ++|.++++|.|++|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            457788888898899889888888888888888888888876

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.5e-13  Score=69.04  Aligned_cols=43  Identities=35%  Similarity=0.590  Sum_probs=37.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            5667888899999999999999999999999999999998864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-13  Score=68.97  Aligned_cols=43  Identities=42%  Similarity=0.665  Sum_probs=38.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5677888999999999999999999999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.3e-13  Score=69.31  Aligned_cols=43  Identities=33%  Similarity=0.576  Sum_probs=37.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888899999999999999999999999999999998864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=69.19  Aligned_cols=43  Identities=37%  Similarity=0.593  Sum_probs=38.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4567888999999999999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=69.15  Aligned_cols=43  Identities=40%  Similarity=0.664  Sum_probs=37.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888899999999999999999999999999999998864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.9e-13  Score=67.97  Aligned_cols=42  Identities=31%  Similarity=0.452  Sum_probs=37.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            567788999999999999999999999999999999999884

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.5e-13  Score=69.10  Aligned_cols=43  Identities=42%  Similarity=0.627  Sum_probs=38.0

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.6e-13  Score=68.95  Aligned_cols=43  Identities=30%  Similarity=0.529  Sum_probs=36.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888889999999999999999999998999999988863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.2e-13  Score=69.39  Aligned_cols=43  Identities=44%  Similarity=0.610  Sum_probs=37.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5667888899999999999999999999999999999998864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.6e-13  Score=68.91  Aligned_cols=43  Identities=40%  Similarity=0.645  Sum_probs=38.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.8e-13  Score=68.04  Aligned_cols=42  Identities=36%  Similarity=0.617  Sum_probs=36.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            566788888999999999999999999999899999898884

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.3e-13  Score=68.62  Aligned_cols=42  Identities=26%  Similarity=0.484  Sum_probs=37.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            567788899999999999999999999999999999999884

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.6e-13  Score=68.94  Aligned_cols=43  Identities=40%  Similarity=0.617  Sum_probs=36.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567888888888888888888888888888888888888864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.3e-13  Score=69.25  Aligned_cols=43  Identities=42%  Similarity=0.661  Sum_probs=36.5

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667888888889889988888888888888888888888864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.5e-13  Score=69.01  Aligned_cols=43  Identities=40%  Similarity=0.598  Sum_probs=37.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888899999999999999999999999999999998864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.6e-13  Score=68.25  Aligned_cols=42  Identities=36%  Similarity=0.524  Sum_probs=37.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            566788889999999999999999999999999999999884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.5e-13  Score=69.06  Aligned_cols=43  Identities=33%  Similarity=0.440  Sum_probs=36.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888999999999999999999988899888988863

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.5e-13  Score=67.61  Aligned_cols=41  Identities=37%  Similarity=0.682  Sum_probs=36.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            56678889999999999999999999999999999999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.8e-13  Score=68.06  Aligned_cols=43  Identities=35%  Similarity=0.664  Sum_probs=38.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567888999999999999999999999999999999999863

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.7e-13  Score=68.84  Aligned_cols=43  Identities=40%  Similarity=0.647  Sum_probs=36.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            5667888888999999999999999999988899888988863

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-13  Score=69.38  Aligned_cols=42  Identities=36%  Similarity=0.483  Sum_probs=32.9

Q ss_pred             HHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        75 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      ++|.++++|.|++|++.|.+...|..|+++|++++||.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456777788888888888888888888888888888888776

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.4e-13  Score=67.61  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=37.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            567788899999999999999999999999999999999884

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.5e-13  Score=68.27  Aligned_cols=43  Identities=30%  Similarity=0.316  Sum_probs=38.4

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCC-CCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG-DKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++ ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999 99999863

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.32  E-value=2.8e-13  Score=66.66  Aligned_cols=41  Identities=32%  Similarity=0.540  Sum_probs=33.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      |+++|.++++|.|++|++.|.+.+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            44567788888888888888888888888888888888876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2e-13  Score=67.21  Aligned_cols=41  Identities=39%  Similarity=0.612  Sum_probs=35.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      |+++|.++++|.|++|++.|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45678888899999999999999999999999999998877

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.5e-13  Score=68.19  Aligned_cols=43  Identities=37%  Similarity=0.598  Sum_probs=38.1

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999863

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.2e-13  Score=67.77  Aligned_cols=42  Identities=24%  Similarity=0.311  Sum_probs=37.9

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            567788999999999999999999999999999999999884

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.9e-13  Score=67.31  Aligned_cols=41  Identities=39%  Similarity=0.605  Sum_probs=33.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      |+++|.++++|.|++|++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45567788888888888888888888888888888888876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.30  E-value=5.3e-13  Score=69.38  Aligned_cols=46  Identities=13%  Similarity=0.257  Sum_probs=43.2

Q ss_pred             CccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          89 AYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        89 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++.|.....|..|+++|++++||.|..|++.|...+.|..|+++|+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            4678889999999999999999999999999999999999999985

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.2e-13  Score=66.76  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            445677788888888888888888888888888888888874

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-13  Score=68.34  Aligned_cols=42  Identities=31%  Similarity=0.471  Sum_probs=36.8

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566788889999999999999999999999999988999885

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-13  Score=68.41  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            556778888888888888888888888888888888888886

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.6e-13  Score=65.63  Aligned_cols=42  Identities=33%  Similarity=0.528  Sum_probs=35.7

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      |+++|.++++|.|++|++.|...+.|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            566788888899999999999999999998889888888763

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9e-13  Score=66.63  Aligned_cols=42  Identities=36%  Similarity=0.625  Sum_probs=36.6

Q ss_pred             HHhcCCCceecc--ccCccccCchhHHHHhhhcCCCCCeecCcC
Q psy3507          75 RKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQC  116 (134)
Q Consensus        75 ~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  116 (134)
                      ++|.++++|.|+  .|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467888899997  899999999999999999999999999876

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=2.9e-12  Score=64.88  Aligned_cols=42  Identities=21%  Similarity=0.319  Sum_probs=39.1

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY   90 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   90 (134)
                      +..+++|.|++|++.|.....|..|+++|.++++|.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            456788999999999999999999999999999999999985

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=7e-12  Score=62.50  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=38.2

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccC
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA   89 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   89 (134)
                      +.++++|.|+.|++.|.....|..|+++|.++++|.|++||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            56778899999999999999999999999999999999996

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=2.6e-12  Score=63.56  Aligned_cols=39  Identities=21%  Similarity=0.390  Sum_probs=28.8

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      +|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            456677777777777777777777777777777777775

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.7e-12  Score=65.17  Aligned_cols=40  Identities=33%  Similarity=0.467  Sum_probs=30.8

Q ss_pred             HHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecC
Q psy3507          75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ  114 (134)
Q Consensus        75 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  114 (134)
                      ++|.++++|.|++|++.|.....|..|+++|++++||.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            3566777788888888888888888887778877787775

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=5e-12  Score=61.74  Aligned_cols=38  Identities=37%  Similarity=0.700  Sum_probs=33.2

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      +|.++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            57788889999999999999999999888998888877

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=9.3e-12  Score=61.70  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      +.++++|.|+.|++.|...+.|..|+++|.++++|.|++|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3456678888888899999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.24  E-value=1.1e-11  Score=62.05  Aligned_cols=38  Identities=29%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556667777788899999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=62.09  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=32.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566777777888999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=61.93  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            44556677777788899999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=62.01  Aligned_cols=38  Identities=29%  Similarity=0.372  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566777777788899999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.5e-11  Score=61.53  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34556677777788899999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.2e-11  Score=61.88  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456677777788899999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=62.04  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|++|++.|...+.|..|+++|.+++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            8 TGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344567777778889999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=61.97  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.+++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            44556677777888899999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-11  Score=61.77  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            44566777778888999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.22  E-value=1.1e-11  Score=62.06  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666677778889999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.2e-11  Score=61.92  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566777778888899999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=62.06  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=32.9

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44566777778889999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=61.80  Aligned_cols=39  Identities=23%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            8 SGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345567777788889999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=62.04  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=33.5

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            8 TGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345566777788889999999999999999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.3e-11  Score=61.84  Aligned_cols=39  Identities=28%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            8 SGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            445667777888889999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=62.03  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            44556677777788899999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=61.96  Aligned_cols=39  Identities=28%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            8 TGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344567777788889999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.6e-11  Score=61.40  Aligned_cols=38  Identities=16%  Similarity=0.129  Sum_probs=32.5

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566677777788899999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.5e-11  Score=61.53  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44567777778889999999999999999999999986

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.4e-12  Score=62.91  Aligned_cols=41  Identities=34%  Similarity=0.592  Sum_probs=33.1

Q ss_pred             HHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCc
Q psy3507          75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ  115 (134)
Q Consensus        75 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  115 (134)
                      ++|.++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            35777888888888888888888888888888888888863

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.2e-11  Score=61.90  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            8 SGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            345567777888889999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=9.6e-12  Score=62.24  Aligned_cols=38  Identities=26%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            34556677777788899999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.1e-11  Score=62.04  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=33.2

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|++|++.|...+.|..|+++|.+++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            8 AGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344566777777888999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1e-11  Score=62.08  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=33.0

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.+++||.|++|
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            9 GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44567777788888999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.1e-11  Score=62.12  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            8 SVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344566677777888899999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1e-11  Score=62.17  Aligned_cols=38  Identities=26%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556777777788899999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.21  E-value=1.2e-11  Score=61.90  Aligned_cols=38  Identities=26%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34556667777788899999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=8.7e-14  Score=77.39  Aligned_cols=52  Identities=21%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCC
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      +++.|+.|++.|. ...|..|+ .+.+++++.|+.|++.|. ...|..|++++.+
T Consensus        16 r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A           16 RLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             cccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccC
Confidence            4455555555552 44555554 444555555555555444 2445555544444

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1e-11  Score=62.20  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=33.4

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            8 TGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344567777788889999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.21  E-value=1.3e-11  Score=61.76  Aligned_cols=39  Identities=26%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            8 AGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345567777788889999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.1e-11  Score=62.05  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            34556777777888899999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.4e-11  Score=61.60  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566777777888999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.2e-11  Score=61.88  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            9 GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556677777888999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=62.04  Aligned_cols=39  Identities=28%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344567777788888999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.5e-11  Score=61.50  Aligned_cols=38  Identities=32%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            9 GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34556677777788899999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.20  E-value=1.2e-11  Score=61.87  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      +++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            3456666677788899999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.20  E-value=1e-11  Score=62.11  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|...+.|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566777778888999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-11  Score=61.68  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456667777788899999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.2e-11  Score=61.97  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=32.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566777777888999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.3e-11  Score=61.67  Aligned_cols=38  Identities=29%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34456666777788889999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-11  Score=61.98  Aligned_cols=38  Identities=26%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34556677777788889999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.4e-11  Score=61.58  Aligned_cols=38  Identities=24%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34556677778888999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=61.82  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            8 TGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             SSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            345567777888889999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.18  E-value=1.5e-11  Score=61.46  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            9 GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44566777777888999999999999999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.6e-11  Score=61.41  Aligned_cols=40  Identities=28%  Similarity=0.361  Sum_probs=36.0

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      +.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4566778888899999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.5e-11  Score=61.53  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=33.4

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            8 SGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344567777788889999999999999999999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.2e-11  Score=61.87  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=35.6

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4556778888888999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.8e-11  Score=60.01  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            8 SGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344567777777888899999999999999999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=62.07  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566777777888899999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.7e-11  Score=60.55  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566777778888999999999999999999999875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.15  E-value=1.8e-11  Score=58.30  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=27.3

Q ss_pred             HhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         101 HERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       101 H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+++|++++||.|+.|++.|.....|..|+++|+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            6677888888888888888888888888888774

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.7e-11  Score=60.74  Aligned_cols=38  Identities=29%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHH-HhcCCCceecccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCEYC   88 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C   88 (134)
                      ++++|.|+.|++.|.....|..|++ +|.+++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3455667777778899999999999 9999999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=8.4e-11  Score=57.94  Aligned_cols=39  Identities=15%  Similarity=0.243  Sum_probs=35.0

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      +.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            456778899999999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.1e-10  Score=58.27  Aligned_cols=38  Identities=26%  Similarity=0.433  Sum_probs=32.1

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      .++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            8 TGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34456777778888999999999999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.1e-10  Score=58.27  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=31.8

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      .++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            8 TGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            34456677777888899999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.09  E-value=1e-10  Score=58.42  Aligned_cols=37  Identities=30%  Similarity=0.450  Sum_probs=31.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            9 GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4455667777788889999999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.09  E-value=6.7e-11  Score=56.99  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=26.2

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCCCCeec
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      |.++++|.|++|++.|...+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4566777777777777777777777777777777654

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.2e-10  Score=58.05  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            4456677777788899999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.3e-10  Score=58.03  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=31.1

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3455667777778899999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=58.09  Aligned_cols=39  Identities=28%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      +.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            455677888888999999999999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.7e-11  Score=59.16  Aligned_cols=35  Identities=26%  Similarity=0.520  Sum_probs=32.8

Q ss_pred             HHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         100 IHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       100 ~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .|+++|++++||.|..|++.|.....|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA   36 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhc
Confidence            47889999999999999999999999999999985

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.7e-10  Score=56.34  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=31.7

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      .++++|.|+.|++.|...+.|..|+++|.++++|.|.
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4556677778888899999999999999999999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=58.09  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=31.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4456667777788889999999999999999999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=58.03  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4456677777888899999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.07  E-value=1.4e-10  Score=56.74  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      +.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            34556778888888999999999999999999999985

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=58.17  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            3445667777778889999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.1e-10  Score=58.35  Aligned_cols=38  Identities=29%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      .++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            8 TGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34456677777788899999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=58.16  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            9 GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4455667777788999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.4e-10  Score=57.91  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            8 TGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             SSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            34456777777888899999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.4e-10  Score=57.80  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=31.2

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3455667777888899999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.6e-11  Score=59.34  Aligned_cols=35  Identities=29%  Similarity=0.505  Sum_probs=32.6

Q ss_pred             HHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         100 IHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       100 ~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .|+++|++++||.|+.|++.|.....|.+|+++|+
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT   35 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhC
Confidence            37889999999999999999999999999999984

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=4.4e-11  Score=58.58  Aligned_cols=34  Identities=29%  Similarity=0.658  Sum_probs=32.0

Q ss_pred             HhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         101 HERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       101 H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+++|++++||.|..|++.|.+.+.|.+|+++|+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT   35 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC
Confidence            6788999999999999999999999999999984

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.3e-10  Score=58.01  Aligned_cols=37  Identities=30%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3445666677778889999999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2e-10  Score=57.34  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3455666777778899999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=58.00  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=34.8

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      +.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            456678889999999999999999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.8e-10  Score=57.52  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            8 TGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34456777778888999999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.1e-10  Score=56.56  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            445667777788889999999999999999999985

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.2e-10  Score=58.07  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            3455666777778889999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.5e-10  Score=57.78  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=30.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3455666677778889999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1e-10  Score=58.42  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=31.9

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      .++++|.|++|++.|.....|..|+++|.++++|.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            8 TGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            34556677777888899999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.3e-10  Score=57.95  Aligned_cols=37  Identities=30%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            9 GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            3455677777788889999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.5e-10  Score=57.82  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=30.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3455666677778889999999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.04  E-value=2.5e-10  Score=55.74  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceec
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   85 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   85 (134)
                      .++++|.|+.|++.|...+.|..|+++|.+++||.|
T Consensus         7 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            7 GGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            445667788888889999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=2.6e-10  Score=56.32  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            8 AAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3455677777888888999999999999999999984

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.04  E-value=2.5e-11  Score=64.76  Aligned_cols=45  Identities=11%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHH
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKI  100 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  100 (134)
                      ++|.|+.|++.|.....|.   ++|.++++|.|++|++.|....++..
T Consensus        13 k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~   57 (62)
T 1vd4_A           13 ASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMP   57 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSC
T ss_pred             CCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccccc
Confidence            3444445555555556665   78999999999999999988766543

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.2e-10  Score=57.14  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            3455667777788889999999999999999999973

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.6e-10  Score=57.63  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=31.0

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            9 GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3455667777788889999999999999999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.8e-10  Score=57.94  Aligned_cols=40  Identities=23%  Similarity=0.447  Sum_probs=34.5

Q ss_pred             CCCCcceeeC--CCCCccCChHHHHHHHHHhcCCCceecccc
Q psy3507          49 PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   88 (134)
Q Consensus        49 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   88 (134)
                      +.++++|.|.  .|++.|.....|..|+++|.++++|.|++|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3455667776  788899999999999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.9e-10  Score=57.43  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=30.9

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3455666777788889999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.7e-10  Score=57.53  Aligned_cols=37  Identities=27%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3445666677778889999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2e-10  Score=56.64  Aligned_cols=36  Identities=25%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            344566667777888999999999999999999985

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=56.15  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceec
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   85 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   85 (134)
                      +.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4567889999999999999999999999999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.8e-10  Score=56.84  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      .++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            8 TGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3445667777788889999999999999999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=57.48  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      .++++|.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            8 TGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34456777777888889999999999999999999964

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.3e-10  Score=55.16  Aligned_cols=33  Identities=18%  Similarity=0.448  Sum_probs=17.3

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      |.++++|.|++|++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            444555555555555555555555555555443

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3e-10  Score=56.07  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            445566777777888899999999999999999884

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.2e-10  Score=55.95  Aligned_cols=37  Identities=22%  Similarity=0.411  Sum_probs=31.8

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceec
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   85 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   85 (134)
                      +.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            3455677888888899999999999999999999987

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.9e-10  Score=55.35  Aligned_cols=30  Identities=17%  Similarity=0.344  Sum_probs=20.0

Q ss_pred             cCCCCCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507         105 HTGDKPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       105 h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +++++||.|..  |++.|...+.|.+|+++|+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            45666777764  7777777777777776664

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=2.1e-10  Score=57.27  Aligned_cols=37  Identities=22%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcC-CCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTG-EKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.+ +++|.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            9 KEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556677777788899999999999999 99999974

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.5e-10  Score=55.08  Aligned_cols=32  Identities=19%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             hhcCCCCCeecCcChhhhcCHHHHHHH-HHhcC
Q psy3507         103 RKHTGDKPYICQQCRDTFSSLYLFRNR-LQSHG  134 (134)
Q Consensus       103 ~~h~~~~~~~C~~C~~~F~~~~~l~~H-~~~H~  134 (134)
                      ++|++++||.|..|++.|.....|..| +++|+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            356667777777777777777777777 66663

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.5e-10  Score=56.35  Aligned_cols=36  Identities=14%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            445667777777888999999999999999999884

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.8e-10  Score=56.70  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   87 (134)
                      ++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4456777778888999999999999999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=8.6e-11  Score=55.82  Aligned_cols=32  Identities=19%  Similarity=0.539  Sum_probs=21.5

Q ss_pred             hhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         103 RKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       103 ~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++|++++||.|..|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            34666667777777777777777777766663

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=4.7e-11  Score=68.22  Aligned_cols=55  Identities=16%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCC
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      +.++++|.|+.|++.|.....|..|+++|.+++||.|..|.    ....|..|.+.|.+
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            45567788888888899999999999999999999997654    45667778888776

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.97  E-value=3.7e-10  Score=52.79  Aligned_cols=32  Identities=28%  Similarity=0.517  Sum_probs=16.2

Q ss_pred             cCCCceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      .++++|.|++|++.|.+.+.|..|+++|++++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            34445555555555555555555555554443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.96  E-value=4.1e-10  Score=52.69  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      |.++++|.|++|++.|.....|..|+++|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            445556666666666666666666666665554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.96  E-value=1.5e-10  Score=54.95  Aligned_cols=36  Identities=33%  Similarity=0.617  Sum_probs=30.2

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |+++|.+++||.|+.|++.|.....|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            556788888899999999999999999998888764

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.5e-10  Score=56.38  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      ++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            345566777777888899999999999999999986

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.96  E-value=4.7e-10  Score=52.48  Aligned_cols=30  Identities=23%  Similarity=0.667  Sum_probs=19.9

Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |++++||.|..|++.|.....|.+|+++|+
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            556666666666666666666666666663

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.95  E-value=4.6e-10  Score=52.47  Aligned_cols=31  Identities=23%  Similarity=0.525  Sum_probs=28.8

Q ss_pred             hcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         104 KHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       104 ~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +|++++||.|..|++.|.....|..|+++|+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            3788999999999999999999999999985

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.5e-10  Score=55.83  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      .++++|.|++|++.|.....|..|+++|.+++||.|.
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            8 TDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445677778888899999999999999999999884

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=1.1e-11  Score=70.78  Aligned_cols=56  Identities=11%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             HHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          74 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        74 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      .++|.++++|.|++|++.|.....|..|+++|++++||.|..|.+.    ..|..|+++|
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~----~~~~~~~~~~   72 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR----KQLLSKQKYA   72 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCC----CCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhH----HHHHhhhccc
Confidence            3468899999999999999999999999999999999999877643    3344555444

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=6.9e-10  Score=59.90  Aligned_cols=38  Identities=16%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             CCCCcceeeCC--CCCccCChHHHHHHH-HHhcCCCceecc
Q psy3507          49 PNISYKYTCYA--CDYHTLMSEDMKKHM-RKHTGEKPYKCE   86 (134)
Q Consensus        49 ~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~   86 (134)
                      .++++||.|..  |++.|...+.|..|+ ++|++++|+.|.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            34555566643  666666666666664 356666655554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=6.5e-10  Score=52.37  Aligned_cols=30  Identities=20%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             hcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         104 KHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       104 ~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      .|.+++||.|..|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            355566666666666666666666666655

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=5.4e-10  Score=52.67  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=17.7

Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.+++||.|..|++.|.....|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            45556666666666666666666666655

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.92  E-value=7.4e-10  Score=51.31  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=15.6

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCCCCe
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGDKPY  111 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  111 (134)
                      ||.|++|++.|...+.|..|+++|++++||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            445555555555555555555555555544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=9.2e-10  Score=51.76  Aligned_cols=29  Identities=28%  Similarity=0.480  Sum_probs=16.9

Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.+++||.|..|++.|.....|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            45555566666666666555666665555

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=9.3e-10  Score=60.88  Aligned_cols=63  Identities=17%  Similarity=0.311  Sum_probs=56.1

Q ss_pred             HHHHHHHHhcCCCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          69 DMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        69 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .|..|++.+.+++++.|+.|++.|. ...|..|+ .+.+++|+.|+.|++.|. +..|..|+++|+
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHcc
Confidence            4566777889999999999999995 89999999 899999999999999987 599999998874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.89  E-value=1.2e-09  Score=52.42  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHHHhcCCCceec
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   85 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   85 (134)
                      .++++|.|+.|++.|...+.|..|+++|.++++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            567889999999999999999999999999998865

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.87  E-value=1.3e-09  Score=47.86  Aligned_cols=27  Identities=26%  Similarity=0.704  Sum_probs=23.0

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||.|..||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468888889999988889999988885

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.87  E-value=1.2e-09  Score=55.14  Aligned_cols=34  Identities=24%  Similarity=0.576  Sum_probs=24.1

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhh-hcCCCC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHER-KHTGDK  109 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~  109 (134)
                      +|.++++|.|++|++.|.....|..|++ +|+++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            3667777888888888888888888877 777654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.87  E-value=1.1e-09  Score=48.30  Aligned_cols=27  Identities=30%  Similarity=0.652  Sum_probs=23.1

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||.|..||+.|...+.|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468889999999999999999988885

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=5.2e-10  Score=53.05  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=15.0

Q ss_pred             cCCCCCeecCcChhhhcCH-HHHHHHHHhc
Q psy3507         105 HTGDKPYICQQCRDTFSSL-YLFRNRLQSH  133 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~-~~l~~H~~~H  133 (134)
                      |.+++||.|..|++.|... ..|.+|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            4445555555555555555 5555555544

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.5e-09  Score=51.01  Aligned_cols=29  Identities=21%  Similarity=0.407  Sum_probs=17.2

Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.+++||.|..|++.|.....|.+|+++|
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            45555666666666666666666666555

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=1.4e-09  Score=51.83  Aligned_cols=34  Identities=26%  Similarity=0.593  Sum_probs=18.5

Q ss_pred             cCCCceecc--ccCccccCchhHHHHhhhcCCCCCe
Q psy3507          78 TGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPY  111 (134)
Q Consensus        78 ~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  111 (134)
                      .++++|.|+  .|++.|.+.+.|..|+++|++++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            345555555  3555555555555555555555544

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=2.4e-09  Score=50.34  Aligned_cols=29  Identities=21%  Similarity=0.471  Sum_probs=15.4

Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |.+++||.|..|++.|.....|..|+++|
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            34445555555555555555555555554

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.82  E-value=4.4e-09  Score=48.61  Aligned_cols=32  Identities=25%  Similarity=0.501  Sum_probs=29.6

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCcee
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYK   84 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   84 (134)
                      ++|.|+.|++.|...+.|..|+++|.++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47899999999999999999999999999875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=3.1e-09  Score=50.97  Aligned_cols=31  Identities=29%  Similarity=0.457  Sum_probs=16.7

Q ss_pred             cCCCceeccc--cCccccCchhHHHHhhhcCCC
Q psy3507          78 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        78 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      .+++||.|+.  |++.|.+.+.|..|+++|+++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4455555543  555555555555555555543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=2.9e-09  Score=49.99  Aligned_cols=32  Identities=44%  Similarity=0.924  Sum_probs=20.8

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.++++|.|++|++.|.....|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            45566666666666666666666666666654

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=7.3e-09  Score=55.91  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=35.3

Q ss_pred             hcCCCceeccc--cCccccCchhHHHHh-hhcCCCCCeecCc
Q psy3507          77 HTGEKPYKCEY--CAYSCTQSSALKIHE-RKHTGDKPYICQQ  115 (134)
Q Consensus        77 h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~  115 (134)
                      ..+++||.|+.  |+++|.+.+.|..|+ ++|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            57899999975  999999999999997 6899999998864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.5e-09  Score=49.75  Aligned_cols=32  Identities=34%  Similarity=0.780  Sum_probs=21.7

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.++++|.|++|++.|.....|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            55666677777777777777777776666654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=4.3e-09  Score=49.41  Aligned_cols=32  Identities=16%  Similarity=0.251  Sum_probs=22.9

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.++++|.|++|++.|...+.|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            55667777777777777777777777777654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.77  E-value=4.2e-09  Score=46.54  Aligned_cols=27  Identities=26%  Similarity=0.544  Sum_probs=22.2

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            467888888888888888888888874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.4e-09  Score=51.58  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=23.8

Q ss_pred             HhcCCCceeccccCccccCchhHHHH-hhhcCCC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGD  108 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~  108 (134)
                      +|.+++||.|+.|++.|...+.|..| ++.|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            46677777777777777777777777 6667653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=3.6e-09  Score=50.04  Aligned_cols=33  Identities=27%  Similarity=0.565  Sum_probs=23.2

Q ss_pred             HhcCCCceeccccCccccCc-hhHHHHhhhcCCC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQS-SALKIHERKHTGD  108 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~  108 (134)
                      +|.++++|.|++|++.|... +.|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            45666777777777777777 7777777776654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=4.6e-09  Score=49.24  Aligned_cols=32  Identities=28%  Similarity=0.473  Sum_probs=18.4

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.++++|.|++|++.|.....|..|+++|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            44555566666666666666666665555544

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=6.9e-09  Score=48.69  Aligned_cols=32  Identities=31%  Similarity=0.587  Sum_probs=19.1

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.++++|.|++|++.|.....|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            44555666666666666666666666666554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.72  E-value=6.5e-09  Score=52.31  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=16.6

Q ss_pred             CCCcceeeCCCCCccCChHHHHHHHH-HhcCC
Q psy3507          50 NISYKYTCYACDYHTLMSEDMKKHMR-KHTGE   80 (134)
Q Consensus        50 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   80 (134)
                      .++++|.|.+|++.|.....|..|++ +|.++
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            34455555555555555555555555 55543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=6.9e-09  Score=55.89  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      +.+++||.|.+|++.|.....|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            556788888888888888888888888888754

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.71  E-value=6.5e-10  Score=55.78  Aligned_cols=32  Identities=19%  Similarity=0.442  Sum_probs=15.6

Q ss_pred             hcCCCceecc--ccCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCE--YCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.++++|.|+  .|++.|...+.|..|+++|+++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            4444555553  3555555555555555544443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.70  E-value=7.7e-10  Score=50.86  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=24.3

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCCCCe
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPY  111 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  111 (134)
                      +||.|++|++.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            3677888888888888888888888887776

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.15  E-value=1.9e-09  Score=46.93  Aligned_cols=26  Identities=31%  Similarity=0.818  Sum_probs=21.5

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|+.||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47888888888888888888888874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.69  E-value=7.1e-09  Score=49.09  Aligned_cols=29  Identities=24%  Similarity=0.455  Sum_probs=16.8

Q ss_pred             cCCCCCeecCc--ChhhhcCHHHHHHHHHhc
Q psy3507         105 HTGDKPYICQQ--CRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       105 h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H  133 (134)
                      |++++||.|..  |++.|...+.|.+|+++|
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            44555666653  666666666666666555

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.69  E-value=4.8e-09  Score=49.67  Aligned_cols=24  Identities=21%  Similarity=0.487  Sum_probs=10.4

Q ss_pred             CCCceeccccCccccCchhHHHHh
Q psy3507          79 GEKPYKCEYCAYSCTQSSALKIHE  102 (134)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~  102 (134)
                      +++||.|++|+++|.+.+.|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            334444444444444444444443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.68  E-value=9.7e-09  Score=48.59  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=25.0

Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      +.+++||.|..||++|.+.++|.+|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            568999999999999999999999984

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.67  E-value=1.4e-08  Score=45.32  Aligned_cols=27  Identities=33%  Similarity=0.602  Sum_probs=21.2

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            467888888888888888888888774

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=2.4e-08  Score=47.35  Aligned_cols=35  Identities=14%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             CCCCcceeeC--CCCCccCChHHHHHHHHHhcCCCce
Q psy3507          49 PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPY   83 (134)
Q Consensus        49 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~   83 (134)
                      +.++++|.|+  .|++.|...+.|..|+++|.++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3567889999  5999999999999999999998876

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.61  E-value=1.8e-08  Score=47.66  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=16.8

Q ss_pred             hcCCCceeccc--cCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEY--CAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.++++|.|++  |++.|...+.|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34455555552  555555555555555555443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.61  E-value=2.2e-08  Score=44.35  Aligned_cols=26  Identities=19%  Similarity=0.648  Sum_probs=20.3

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            46788888888888888888887774

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.60  E-value=2.2e-08  Score=43.65  Aligned_cols=25  Identities=20%  Similarity=0.485  Sum_probs=19.1

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ||.|..|++.|.....|.+|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5778888888888888888887774

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.60  E-value=3.5e-08  Score=43.92  Aligned_cols=27  Identities=33%  Similarity=0.763  Sum_probs=13.9

Q ss_pred             CceeccccCccccCchhHHHHhhhcCC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            345555555555555555555555544

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.59  E-value=3.3e-08  Score=43.75  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=12.2

Q ss_pred             ceeccccCccccCchhHHHHhhhcCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      ||.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            34444444444444444444444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.58  E-value=1.6e-08  Score=44.85  Aligned_cols=26  Identities=15%  Similarity=0.358  Sum_probs=24.4

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|+.|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            58999999999999999999999984

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.58  E-value=4e-09  Score=52.80  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             HHHHhhhcCCCCCeecC--cChhhhcCHHHHHHHHHhcC
Q psy3507          98 LKIHERKHTGDKPYICQ--QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        98 l~~H~~~h~~~~~~~C~--~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +..|...|++++||.|.  .|++.|...+.|.+|+++|+
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            34455668899999995  69999999999999999885

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=2.7e-08  Score=45.24  Aligned_cols=27  Identities=30%  Similarity=0.598  Sum_probs=19.1

Q ss_pred             CCCeecC--cChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQ--QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~--~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||.|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            3567777  67777777777777777764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.55  E-value=4.6e-08  Score=43.23  Aligned_cols=26  Identities=31%  Similarity=0.645  Sum_probs=13.8

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcC
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTG   79 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~   79 (134)
                      +|.|+.|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            35555555555555555555555544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.54  E-value=3.9e-08  Score=44.38  Aligned_cols=26  Identities=19%  Similarity=0.632  Sum_probs=20.7

Q ss_pred             CCeecC--cChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQ--QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~--~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|.  .||+.|...+.|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            477887  78888888888888888774

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.54  E-value=7.6e-08  Score=43.67  Aligned_cols=28  Identities=25%  Similarity=0.654  Sum_probs=17.9

Q ss_pred             Cceecc--ccCccccCchhHHHHhhhcCCC
Q psy3507          81 KPYKCE--YCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      +||.|+  .|++.|...+.|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            456666  5666666666666666666654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.54  E-value=5.8e-08  Score=43.15  Aligned_cols=25  Identities=36%  Similarity=0.877  Sum_probs=11.3

Q ss_pred             eeccccCccccCchhHHHHhhhcCC
Q psy3507          83 YKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      |.|++|++.|...+.|..|+++|++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHcc
Confidence            4444444444444444444444443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=9.5e-09  Score=45.95  Aligned_cols=26  Identities=27%  Similarity=0.732  Sum_probs=20.1

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|..|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            57788888888888888888877764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=1e-08  Score=45.55  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            46788888888888888888887774

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.50  E-value=7.5e-08  Score=42.25  Aligned_cols=26  Identities=31%  Similarity=0.712  Sum_probs=14.9

Q ss_pred             CceeccccCccccCchhHHHHhhhcC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45556666666655555655555554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.50  E-value=7.7e-08  Score=43.37  Aligned_cols=27  Identities=44%  Similarity=0.974  Sum_probs=15.1

Q ss_pred             ceecc--ccCccccCchhHHHHhhhcCCC
Q psy3507          82 PYKCE--YCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      ||.|+  .|++.|...+.|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            45554  5555555555555555555544

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.49  E-value=5.1e-08  Score=43.01  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=9.2

Q ss_pred             eeeCCCCCccCChHHHHHHHHHh
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      |.|+.|++.|.....|..|+++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHHHHh
Confidence            33444444444444444443333

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.48  E-value=9.5e-08  Score=41.61  Aligned_cols=25  Identities=36%  Similarity=0.733  Sum_probs=12.2

Q ss_pred             CceeccccCccccCchhHHHHhhhc
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      +||.|+.|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3445555555555555555554443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.47  E-value=7.9e-08  Score=42.41  Aligned_cols=26  Identities=19%  Similarity=0.524  Sum_probs=21.2

Q ss_pred             CCeecC--cChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQ--QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~--~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|.  .|++.|...+.|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            468888  88888888888888888874

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=6.5e-08  Score=42.61  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=9.3

Q ss_pred             eeeCCCCCccCChHHHHHHHHHh
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      |.|+.|++.|.....|..|+++|
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHHHh
Confidence            33444444444444444444333

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.46  E-value=1e-07  Score=51.20  Aligned_cols=41  Identities=12%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             CCCCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCc
Q psy3507          49 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY   90 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   90 (134)
                      +..+++|.|..|++.|.....|..|+++|+++. ..+.+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~~   48 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYIDL   48 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-cccccccC
Confidence            456789999999999999999999999998864 45555543

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.46  E-value=7.9e-08  Score=41.99  Aligned_cols=25  Identities=32%  Similarity=0.890  Sum_probs=13.5

Q ss_pred             CceeccccCccccCchhHHHHhhhc
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      +||.|+.|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3455555555555555555555544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.84  E-value=2.1e-08  Score=44.55  Aligned_cols=27  Identities=44%  Similarity=0.827  Sum_probs=15.6

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      ||.|++|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            455666666666666666665555543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.45  E-value=1.2e-07  Score=41.20  Aligned_cols=25  Identities=44%  Similarity=0.775  Sum_probs=14.6

Q ss_pred             eeccccCccccCchhHHHHhhhcCC
Q psy3507          83 YKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      |.|++|++.|.....|..|+++|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            5556666666666666666555544

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.44  E-value=2e-07  Score=41.26  Aligned_cols=30  Identities=20%  Similarity=0.613  Sum_probs=26.6

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKP   82 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   82 (134)
                      ++|.|+.|++.|.....|..|+++|.++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            368999999999999999999999987653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.44  E-value=1.9e-07  Score=41.06  Aligned_cols=29  Identities=45%  Similarity=0.731  Sum_probs=26.5

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      ++|.|++|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47999999999999999999999998764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.43  E-value=1.6e-07  Score=41.80  Aligned_cols=27  Identities=30%  Similarity=0.683  Sum_probs=14.7

Q ss_pred             ceeccccCccccCchhHHHH-hhhcCCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIH-ERKHTGD  108 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~  108 (134)
                      ||.|+.|++.|...+.|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            45555555555555555555 4555543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.6e-08  Score=44.47  Aligned_cols=28  Identities=43%  Similarity=0.770  Sum_probs=16.5

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      +||.|+.|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            3556666666666666666666655543

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.43  E-value=4e-09  Score=48.35  Aligned_cols=31  Identities=23%  Similarity=0.466  Sum_probs=28.4

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCce
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPY   83 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   83 (134)
                      ++|.|+.|++.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4689999999999999999999999998876

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=2.2e-07  Score=40.77  Aligned_cols=29  Identities=34%  Similarity=0.494  Sum_probs=26.3

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47999999999999999999999998763

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.38  E-value=9e-08  Score=42.62  Aligned_cols=26  Identities=27%  Similarity=0.562  Sum_probs=23.8

Q ss_pred             CCeecCcChhhhcCHHHHHHH-HHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNR-LQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H-~~~H~  134 (134)
                      +||.|..|++.|.....|..| +++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            489999999999999999999 78884

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=1.1e-07  Score=41.04  Aligned_cols=24  Identities=50%  Similarity=0.808  Sum_probs=12.7

Q ss_pred             ceeccccCccccCchhHHHHhhhc
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      ||.|++|++.|...+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555555555555555555443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.17  E-value=1e-06  Score=38.57  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=13.0

Q ss_pred             ceecc--ccCccccCchhHHHHhhhcC
Q psy3507          82 PYKCE--YCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~h~  106 (134)
                      +|.|+  .|++.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            34555  55555555555555555443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.14  E-value=4.1e-06  Score=44.61  Aligned_cols=46  Identities=20%  Similarity=0.366  Sum_probs=28.3

Q ss_pred             cCccccCchhHHHHh-hhcCCCC------CeecC--cChhhhcCHHHHHHHHHhc
Q psy3507          88 CAYSCTQSSALKIHE-RKHTGDK------PYICQ--QCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        88 C~~~f~~~~~l~~H~-~~h~~~~------~~~C~--~C~~~F~~~~~l~~H~~~H  133 (134)
                      |++.|.+...|..|+ +.|.+.+      +|.|.  .|++.+.....|.+|+++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            555555555555554 2344433      67776  5777777777777777654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.91  E-value=3.8e-05  Score=40.77  Aligned_cols=49  Identities=16%  Similarity=0.407  Sum_probs=41.7

Q ss_pred             eCCCCCccCChHHHHHHHH-HhcCCC------ceecc--ccCccccCchhHHHHhhhc
Q psy3507          57 CYACDYHTLMSEDMKKHMR-KHTGEK------PYKCE--YCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        57 C~~C~~~f~~~~~l~~H~~-~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~h  105 (134)
                      ...|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3459999999999999985 787665      79997  7999999999999998863

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.56  E-value=1.5e-05  Score=47.71  Aligned_cols=30  Identities=17%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             hhcCCCCCeecCcChhhhcCHHHHHHHHHh
Q psy3507         103 RKHTGDKPYICQQCRDTFSSLYLFRNRLQS  132 (134)
Q Consensus       103 ~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~  132 (134)
                      ..|+|++||.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            457788888888899999888888888764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.43  E-value=5e-05  Score=45.90  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             cceeeCCCCCccCChHHHHHHH--HHhcCC-Cceeccc------cCccccCchhHHHHhhhcCCCCCeecCcChhhhcCH
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHM--RKHTGE-KPYKCEY------CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSL  123 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~-~~~~C~~------C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~  123 (134)
                      .++.|.+|...|.+.+.+..|.  +.|... +.+.+..      =+..+....    +.....+...|.|..|++.|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            4688999999999999999998  345321 1222210      012222111    22335567789999999999999


Q ss_pred             HHHHHHHH
Q psy3507         124 YLFRNRLQ  131 (134)
Q Consensus       124 ~~l~~H~~  131 (134)
                      ..|..|+.
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999974

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.92  E-value=0.00021  Score=42.76  Aligned_cols=27  Identities=33%  Similarity=0.422  Sum_probs=16.3

Q ss_pred             hcCCCceeccccCccccCchhHHHHhh
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |+|+++|.|..|++.|.+...|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            445556666666666666666666654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.91  E-value=0.0011  Score=41.87  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             cCCCCCCcccCC------------CCcceee--CCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhh
Q psy3507          39 HCKTCSTVSHPN------------ISYKYTC--YACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK  104 (134)
Q Consensus        39 ~C~~C~~~f~~~------------~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      .|+.|...+...            .+....|  .-|+.... ...|..|.. .-...+..|+.|+..+ ....|..|+..
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~  131 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILK  131 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHH
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhh
Confidence            788887776521            1234667  45766554 455677753 3344678899999877 56779999887


Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      .-..++-.|+.|+..+. ...|..|+.++
T Consensus       132 ~C~~r~~~C~~C~~~~~-~~~l~~H~~~~  159 (170)
T 3hcs_A          132 DCPRRQVSCDNCAASMA-FEDKEIHDQNC  159 (170)
T ss_dssp             TCTTCEEECTTTCCEEE-GGGHHHHHTTC
T ss_pred             hCCCCCeECCCCCCccC-HHHHHhHHHhC
Confidence            77788899999998775 56778888765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.90  E-value=0.00054  Score=33.53  Aligned_cols=21  Identities=24%  Similarity=0.578  Sum_probs=10.5

Q ss_pred             CeecCcChhhhcCHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~  130 (134)
                      +|.|+.|+..|.....|++||
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hm   32 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHM   32 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhh
Confidence            344555555555555555554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.22  E-value=0.0043  Score=30.36  Aligned_cols=24  Identities=21%  Similarity=0.402  Sum_probs=21.5

Q ss_pred             cceeeCCCCCccCChHHHHHHHHH
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRK   76 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~   76 (134)
                      .+|.|+.|+..|...+.|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            578999999999999999999983

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.09  E-value=0.024  Score=35.57  Aligned_cols=74  Identities=19%  Similarity=0.292  Sum_probs=53.4

Q ss_pred             ccccC--CCCCCccc------CC---CCcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhh
Q psy3507          36 LMYHC--KTCSTVSH------PN---ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK  104 (134)
Q Consensus        36 ~~~~C--~~C~~~f~------~~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      ....|  ..|+....      |.   .-.+..|+.|+..+ ....|..|+...-..+...|+.|+..+.. ..|..|..+
T Consensus        81 l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~  158 (170)
T 3hcs_A           81 LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQN  158 (170)
T ss_dssp             SEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTT
T ss_pred             cccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHh
Confidence            34667  56877765      11   12357899999887 56778999987777888899999987755 678999999


Q ss_pred             cCCCCCe
Q psy3507         105 HTGDKPY  111 (134)
Q Consensus       105 h~~~~~~  111 (134)
                      +.|+.++
T Consensus       159 ~~~~~~~  165 (170)
T 3hcs_A          159 CPLALEH  165 (170)
T ss_dssp             CCC----
T ss_pred             CcChhhh
Confidence            9887654

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=94.35  E-value=0.032  Score=32.18  Aligned_cols=29  Identities=21%  Similarity=0.431  Sum_probs=21.5

Q ss_pred             ccccCCCCCCcccCCCCcceeeCCCCCcc
Q psy3507          36 LMYHCKTCSTVSHPNISYKYTCYACDYHT   64 (134)
Q Consensus        36 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~f   64 (134)
                      .+|+|..||..|.....++-.|+.|....
T Consensus        66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           66 KPAQCRKCGFVFKAEINIPSRCPKCKSEW   94 (105)
T ss_dssp             CCCBBTTTCCBCCCCSSCCSSCSSSCCCC
T ss_pred             ECcChhhCcCeecccCCCCCCCcCCCCCc
Confidence            56888888888855556677888887543

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.64  E-value=0.065  Score=24.55  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=16.1

Q ss_pred             CCeecCcChhhhcCHHHHHHHHH
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      ..+.|..|+-+|.+...+..|.+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            45677777777777777777764

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=93.61  E-value=0.044  Score=29.87  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhh
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      ..|.|+.|+.++.- ..+..|...=.+...|.|.+|+..|.. ..++.|..
T Consensus         9 V~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Hts   57 (79)
T 1wjv_A            9 VFFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHVK   57 (79)
T ss_dssp             CEEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCCC
T ss_pred             eEEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCC-CCEeCEee
Confidence            45899999976654 567888654334456899999999985 44556643

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.59  E-value=0.059  Score=32.26  Aligned_cols=27  Identities=11%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             hcCCCceeccccCccccCchhHHHHhh
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      +.+...|.|.+|+..|.+...+..|..
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            344566888888888888888888865

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.44  E-value=0.043  Score=24.97  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=17.6

Q ss_pred             CeecCcChhhhcCHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~  130 (134)
                      .|.|+.|.+.|.+...|..|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHH
Confidence            488888888888888888885

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.32  E-value=0.065  Score=24.37  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=13.9

Q ss_pred             eeccccCccccCchhHHHHhh
Q psy3507          83 YKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |.|++|.+.|.+...|..|..
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHH
Confidence            666666666666666666644

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=92.45  E-value=0.12  Score=27.00  Aligned_cols=28  Identities=18%  Similarity=0.539  Sum_probs=14.5

Q ss_pred             ccccCCCCCCcccCCCCcceeeCCCCCc
Q psy3507          36 LMYHCKTCSTVSHPNISYKYTCYACDYH   63 (134)
Q Consensus        36 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~   63 (134)
                      ..|.|..||..+.-....+..|+.||..
T Consensus        20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~R   47 (63)
T 3h0g_L           20 MIYLCADCGARNTIQAKEVIRCRECGHR   47 (63)
T ss_dssp             CCCBCSSSCCBCCCCSSSCCCCSSSCCC
T ss_pred             eEEECCCCCCeeecCCCCceECCCCCcE
Confidence            3355555655555333344555555543

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=91.61  E-value=0.11  Score=27.84  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=11.3

Q ss_pred             ccCCCCCCcccCCCCcceeeCCCCC
Q psy3507          38 YHCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        38 ~~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      |.|..||..|.........|+.||.
T Consensus        29 Y~C~~CG~~~e~~~~d~irCp~CG~   53 (70)
T 1twf_L           29 YICAECSSKLSLSRTDAVRCKDCGH   53 (70)
T ss_dssp             EECSSSCCEECCCTTSTTCCSSSCC
T ss_pred             EECCCCCCcceeCCCCCccCCCCCc
Confidence            5555555554432222334555554

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=90.91  E-value=0.073  Score=29.46  Aligned_cols=30  Identities=20%  Similarity=0.356  Sum_probs=17.5

Q ss_pred             cccCCCCCCccc-CCCCcceeeCCCCCccCC
Q psy3507          37 MYHCKTCSTVSH-PNISYKYTCYACDYHTLM   66 (134)
Q Consensus        37 ~~~C~~C~~~f~-~~~~~~~~C~~C~~~f~~   66 (134)
                      .|.|+.||+... ..+...+.|+.|+..|..
T Consensus        27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag   57 (83)
T 1vq8_Z           27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTG   57 (83)
T ss_dssp             CEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred             cCcCCCCCCcceeccCCCeEECCCCCCEecC
Confidence            477777776322 333445677777766543

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=90.86  E-value=0.22  Score=24.22  Aligned_cols=27  Identities=22%  Similarity=0.526  Sum_probs=13.9

Q ss_pred             cccCCCCCCcccCCCC---cceeeCCCCCc
Q psy3507          37 MYHCKTCSTVSHPNIS---YKYTCYACDYH   63 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~---~~~~C~~C~~~   63 (134)
                      .|.|-.||+.|+...-   ..-+|+.||..
T Consensus         3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHHHhhCCCcccCccCcE
Confidence            3667777777763222   12456666643

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.77  E-value=0.55  Score=21.47  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=13.5

Q ss_pred             ceeeCCCCCccCChHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~   75 (134)
                      .+.|..|+.+|..-..+..|.+
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhe
Confidence            4556666666666666666654

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=90.56  E-value=0.14  Score=24.98  Aligned_cols=11  Identities=27%  Similarity=0.748  Sum_probs=5.7

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      |+|..||..+.
T Consensus         5 y~C~vCGyvyd   15 (46)
T 6rxn_A            5 YVCNVCGYEYD   15 (46)
T ss_dssp             EEETTTCCEEC
T ss_pred             EECCCCCeEEe
Confidence            55555555544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=90.37  E-value=0.13  Score=28.00  Aligned_cols=40  Identities=18%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSS  122 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~  122 (134)
                      .|.|+.|+..+.. ..+..|...-.+...|.|-.|++.|..
T Consensus        10 ~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A           10 FFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             EEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             EEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCC
Confidence            4788888876654 457778665555556888888888863

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=89.87  E-value=0.73  Score=25.43  Aligned_cols=10  Identities=30%  Similarity=1.072  Sum_probs=5.7

Q ss_pred             CceeccccCc
Q psy3507          81 KPYKCEYCAY   90 (134)
Q Consensus        81 ~~~~C~~C~~   90 (134)
                      ..|.|..|+.
T Consensus        66 ~GWSC~~Cen   75 (89)
T 1wil_A           66 TGWSCHYCDN   75 (89)
T ss_dssp             SSCCCTTTCC
T ss_pred             CCccccccch
Confidence            3466666654

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=89.77  E-value=0.17  Score=32.86  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=22.7

Q ss_pred             CCCeecCcChhhhcC-HHHHHHHHHhc
Q psy3507         108 DKPYICQQCRDTFSS-LYLFRNRLQSH  133 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~-~~~l~~H~~~H  133 (134)
                      ..|..|..|+..|.+ ...|+.|+..|
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            458999999999987 99999999765

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=89.61  E-value=0.27  Score=24.56  Aligned_cols=12  Identities=25%  Similarity=0.736  Sum_probs=7.9

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|.|..||..+.
T Consensus         3 ~y~C~~CGyvYd   14 (52)
T 1e8j_A            3 IYVCTVCGYEYD   14 (52)
T ss_dssp             CEECSSSCCCCC
T ss_pred             cEEeCCCCeEEc
Confidence            366777776665

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=89.48  E-value=0.06  Score=29.81  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=24.3

Q ss_pred             ceecCcccccccccCCCCccccCCCCCCccc
Q psy3507          18 TLATCIHCRLLLVPTAEELMYHCKTCSTVSH   48 (134)
Q Consensus        18 ~~~~C~~C~~h~~~h~~~~~~~C~~C~~~f~   48 (134)
                      ..+.|+.|+.....-.+...+.|+.|+..|.
T Consensus        26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred             ccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence            4578999977665555566799999999986

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=89.45  E-value=0.21  Score=27.79  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=16.7

Q ss_pred             eeccccCccccCchhHHHHhhhcCCCCC
Q psy3507          83 YKCEYCAYSCTQSSALKIHERKHTGDKP  110 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~  110 (134)
                      ..|-+||+.|..   |..|+..++|..|
T Consensus        22 iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             eEecccchhhHH---HHHHHHHccCCCH
Confidence            567777777764   6677777666554

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=89.35  E-value=0.1  Score=30.56  Aligned_cols=30  Identities=20%  Similarity=0.383  Sum_probs=18.0

Q ss_pred             cccCCCCCC-cccCCCCcceeeCCCCCccCC
Q psy3507          37 MYHCKTCST-VSHPNISYKYTCYACDYHTLM   66 (134)
Q Consensus        37 ~~~C~~C~~-~f~~~~~~~~~C~~C~~~f~~   66 (134)
                      .|.|+.||+ .+.......+.|..|++.|..
T Consensus        60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAG   90 (116)
T 3cc2_Z           60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTG   90 (116)
T ss_dssp             CEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred             CCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence            377777776 333333345677777776543

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.17  E-value=0.057  Score=29.52  Aligned_cols=13  Identities=23%  Similarity=0.570  Sum_probs=8.0

Q ss_pred             ceeccccCccccC
Q psy3507          82 PYKCEYCAYSCTQ   94 (134)
Q Consensus        82 ~~~C~~C~~~f~~   94 (134)
                      .|.|+.||.-|.-
T Consensus        51 ~FkCP~CgEEFyG   63 (95)
T 2k5c_A           51 VFKCPVCGEEFYG   63 (95)
T ss_dssp             EEECTTTCCEEET
T ss_pred             hhcCCCccHHHhc
Confidence            3667777765543

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=89.16  E-value=0.2  Score=25.28  Aligned_cols=12  Identities=25%  Similarity=0.813  Sum_probs=7.1

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|.|..||..+.
T Consensus         3 ~y~C~vCGyvYd   14 (54)
T 4rxn_A            3 KYTCTVCGYIYD   14 (54)
T ss_dssp             CEEETTTCCEEC
T ss_pred             ceECCCCCeEEC
Confidence            356666666554

>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...

Probab=88.80  E-value=0.19  Score=25.17  Aligned_cols=12  Identities=25%  Similarity=0.670  Sum_probs=7.2

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|+|..||.++.
T Consensus         2 ~~~C~~CGyvYd   13 (52)
T 1yk4_A            2 KLSCKICGYIYD   13 (52)
T ss_dssp             EEEESSSSCEEE
T ss_pred             cEEeCCCCeEEC
Confidence            356666666654

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=88.32  E-value=0.25  Score=26.40  Aligned_cols=12  Identities=33%  Similarity=1.010  Sum_probs=5.5

Q ss_pred             CceeccccCccc
Q psy3507          81 KPYKCEYCAYSC   92 (134)
Q Consensus        81 ~~~~C~~C~~~f   92 (134)
                      ++..|..|+..+
T Consensus        43 r~v~C~~C~~~~   54 (76)
T 2yuc_A           43 RRLKCEFCGCDF   54 (76)
T ss_dssp             SCCCCSSSCCCC
T ss_pred             cceECCCCCCcc
Confidence            334455554444

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=88.30  E-value=0.11  Score=32.87  Aligned_cols=38  Identities=26%  Similarity=0.615  Sum_probs=27.0

Q ss_pred             hhHHHHhhhc--CCCC-----CeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          96 SALKIHERKH--TGDK-----PYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        96 ~~l~~H~~~h--~~~~-----~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ..|..|++.-  .|+.     -|+|..||+ +..-.+|.+||+.|+
T Consensus       133 grlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~Hg  177 (226)
T 2czr_A          133 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  177 (226)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             HHHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHHcC
Confidence            4577787642  3332     278999997 566788999999885

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=88.23  E-value=0.25  Score=31.15  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=13.0

Q ss_pred             ccccCCCCCCcccCCCCcceeeCCCC
Q psy3507          36 LMYHCKTCSTVSHPNISYKYTCYACD   61 (134)
Q Consensus        36 ~~~~C~~C~~~f~~~~~~~~~C~~C~   61 (134)
                      ..|.|+.||.++.  ++.|-.|+.|+
T Consensus       137 ~~~~C~~CG~i~~--~~~p~~CP~Cg  160 (170)
T 3pwf_A          137 KVYICPICGYTAV--DEAPEYCPVCG  160 (170)
T ss_dssp             CEEECTTTCCEEE--SCCCSBCTTTC
T ss_pred             CeeEeCCCCCeeC--CCCCCCCCCCC
Confidence            3466666666554  33444566665

>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}

Probab=87.78  E-value=0.31  Score=26.77  Aligned_cols=13  Identities=15%  Similarity=0.567  Sum_probs=8.4

Q ss_pred             ccccCCCCCCccc
Q psy3507          36 LMYHCKTCSTVSH   48 (134)
Q Consensus        36 ~~~~C~~C~~~f~   48 (134)
                      ..|+|..||.++.
T Consensus        26 ~~y~C~vCGyvYD   38 (81)
T 2kn9_A           26 KLFRCIQCGFEYD   38 (81)
T ss_dssp             CEEEETTTCCEEE
T ss_pred             ceEEeCCCCEEEc
Confidence            3477777776665

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=86.51  E-value=0.55  Score=25.12  Aligned_cols=30  Identities=20%  Similarity=0.456  Sum_probs=16.6

Q ss_pred             cccCCCCCCccc-CCCCcceeeCCCCCccCC
Q psy3507          37 MYHCKTCSTVSH-PNISYKYTCYACDYHTLM   66 (134)
Q Consensus        37 ~~~C~~C~~~f~-~~~~~~~~C~~C~~~f~~   66 (134)
                      .|.|+.||+.-- ....-.+.|..|++.|..
T Consensus        26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             CBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred             CccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence            366777775422 222334667777766643

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=86.27  E-value=0.37  Score=31.19  Aligned_cols=24  Identities=17%  Similarity=0.294  Sum_probs=12.9

Q ss_pred             cccCCCCCCcccCCCCcceeeCCCCC
Q psy3507          37 MYHCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      .|.|..||..+.  +..|..|+.|+.
T Consensus       171 ~~~C~~CG~i~~--g~~p~~CP~C~~  194 (202)
T 1yuz_A          171 FHLCPICGYIHK--GEDFEKCPICFR  194 (202)
T ss_dssp             EEECSSSCCEEE--SSCCSBCTTTCC
T ss_pred             EEEECCCCCEEc--CcCCCCCCCCCC
Confidence            466666665543  244455555553

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=85.79  E-value=0.23  Score=26.72  Aligned_cols=30  Identities=20%  Similarity=0.493  Sum_probs=16.1

Q ss_pred             cccCCCCCCc-ccCCCCcceeeCCCCCccCC
Q psy3507          37 MYHCKTCSTV-SHPNISYKYTCYACDYHTLM   66 (134)
Q Consensus        37 ~~~C~~C~~~-f~~~~~~~~~C~~C~~~f~~   66 (134)
                      .|.|+.||+. ......-.+.|..|++.|..
T Consensus        27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG   57 (73)
T 1ffk_W           27 KYKCPVCGFPKLKRASTSIWVCGHCGYKIAG   57 (73)
T ss_pred             CccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence            4667777652 22223334666666666544

>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}

Probab=85.79  E-value=0.34  Score=24.54  Aligned_cols=12  Identities=17%  Similarity=0.694  Sum_probs=7.5

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|.|..||..+.
T Consensus         3 ~y~C~~CGyvYd   14 (55)
T 2v3b_B            3 KWQCVVCGFIYD   14 (55)
T ss_dssp             EEEETTTCCEEE
T ss_pred             cEEeCCCCeEEC
Confidence            366666666655

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=84.94  E-value=0.14  Score=25.67  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=12.9

Q ss_pred             eecCcChhhhcCHHHHHHHH
Q psy3507         111 YICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~  130 (134)
                      -.|..|+..|..+.+|+.|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            36666666666666666665

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=84.39  E-value=0.46  Score=27.95  Aligned_cols=26  Identities=35%  Similarity=0.781  Sum_probs=14.7

Q ss_pred             cccCCCCCCcccCCCCcce-eeCCCCCc
Q psy3507          37 MYHCKTCSTVSHPNISYKY-TCYACDYH   63 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~~~~-~C~~C~~~   63 (134)
                      .|.|..||..|.. ...++ .|+.|+..
T Consensus        73 ~~~C~~CG~~~e~-~~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVFKP-NALDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEECS-CCSTTCCCSSSSSC
T ss_pred             eEEcCCCCCEEeC-CCCCCCcCccccCC
Confidence            3666677666654 22345 56666543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=83.91  E-value=1.8  Score=24.68  Aligned_cols=38  Identities=21%  Similarity=0.467  Sum_probs=23.5

Q ss_pred             ccCCCCCCccc----CCCCcceeeC---CCCCccCChHHHHHHHH
Q psy3507          38 YHCKTCSTVSH----PNISYKYTCY---ACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        38 ~~C~~C~~~f~----~~~~~~~~C~---~C~~~f~~~~~l~~H~~   75 (134)
                      -.|+.|...+.    ...+..|.|.   .|.++|.+..+|..|+.
T Consensus        38 k~Cp~C~~~V~rVe~~~~~~if~C~~~~~CkrtyLs~rdlqaHI~   82 (101)
T 3vk6_A           38 KMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQRDLQAHIN   82 (101)
T ss_dssp             CBCTTTCCBCSEEEEEEGGGCCCCCCCCCCCCCCSSHHHHHHHHH
T ss_pred             CCCcCcCCeeeeeEEeccCCEEECCCCCCHHHHhcCHHHHHHHHH
Confidence            45777776655    2223446666   47777777777777766

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=83.72  E-value=0.68  Score=20.49  Aligned_cols=21  Identities=14%  Similarity=0.494  Sum_probs=15.9

Q ss_pred             eecCcChhhhcCHHHHHHHHH
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      -.|..|.+.|+.-.+|..|++
T Consensus        10 qhcrfckkkysdvknlikhir   30 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIR   30 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            357778888888888888875

>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A

Probab=83.62  E-value=0.72  Score=24.55  Aligned_cols=12  Identities=25%  Similarity=0.880  Sum_probs=7.3

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|.|..||.++.
T Consensus         7 ~y~C~vCGyiYd   18 (70)
T 1dx8_A            7 KYECEACGYIYE   18 (70)
T ss_dssp             CEEETTTCCEEC
T ss_pred             eEEeCCCCEEEc
Confidence            466666666655

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=82.48  E-value=1.1  Score=19.25  Aligned_cols=21  Identities=19%  Similarity=0.649  Sum_probs=14.7

Q ss_pred             ceeeCCCCCccCChHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHM   74 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~   74 (134)
                      .+.|++|.....+...|..|.
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~   23 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHV   23 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHH
Confidence            466777777777777777664

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=81.30  E-value=3.7  Score=20.55  Aligned_cols=20  Identities=15%  Similarity=0.499  Sum_probs=9.7

Q ss_pred             eeCCCCCccCChHHHHHHHH
Q psy3507          56 TCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        56 ~C~~C~~~f~~~~~l~~H~~   75 (134)
                      .|++|...--+...|..|..
T Consensus         5 vC~~C~~ECET~kEl~~H~~   24 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQ   24 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHH
T ss_pred             hhhHHHhhhhhHHHHHHHhc
Confidence            34455444444445555544

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=80.96  E-value=2.4  Score=22.09  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=17.4

Q ss_pred             ccCCccceecCcccccccccCCCCccccCCCCCCccc
Q psy3507          12 GLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSH   48 (134)
Q Consensus        12 ~~~~~~~~~~C~~C~~h~~~h~~~~~~~C~~C~~~f~   48 (134)
                      +.+++.....|.+|+.      +.....|+.|.+.|.
T Consensus         5 ~~~~~~~~~~C~vC~~------~~~ll~Cd~C~~~~H   35 (66)
T 2lri_C            5 GQQNLAPGARCGVCGD------GTDVLRCTHCAAAFH   35 (66)
T ss_dssp             TTTCCCTTCCCTTTSC------CTTCEECSSSCCEEC
T ss_pred             cccCCCCCCCcCCCCC------CCeEEECCCCCCcee
Confidence            3344444556666642      233556777777766

>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1

Probab=80.78  E-value=0.57  Score=26.07  Aligned_cols=13  Identities=31%  Similarity=0.759  Sum_probs=8.6

Q ss_pred             ccccCCCCCCccc
Q psy3507          36 LMYHCKTCSTVSH   48 (134)
Q Consensus        36 ~~~~C~~C~~~f~   48 (134)
                      ..|.|..||.++.
T Consensus        34 ~~y~C~vCGyvYD   46 (87)
T 1s24_A           34 LKWICITCGHIYD   46 (87)
T ss_dssp             CEEEETTTTEEEE
T ss_pred             ceEECCCCCeEec
Confidence            3477777776665

>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}

Probab=80.62  E-value=1  Score=27.15  Aligned_cols=37  Identities=16%  Similarity=0.428  Sum_probs=0.0

Q ss_pred             eeccccCccccCchhHHHHhhhc-CCC-CCeecCcChhhhc
Q psy3507          83 YKCEYCAYSCTQSSALKIHERKH-TGD-KPYICQQCRDTFS  121 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~h-~~~-~~~~C~~C~~~F~  121 (134)
                      ..|+.|+..  ....++...+.- .+. .-|.|..|+..+.
T Consensus        93 ~~CpkCg~~--~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~  131 (133)
T 3qt1_I           93 RECPKCHSR--ENVFFQLQIRSADEPMTTFYKCVNCGHRWK  131 (133)
T ss_dssp             -----------------------------------------
T ss_pred             CCCCCCCCc--eEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence            689999853  222222222321 111 2389999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	4e-11
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.004
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	4e-10
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-09
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-09
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-09
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-09
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-07
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	4e-07
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	6e-07
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	7e-07
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	7e-07
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.004
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	2e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	1e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-05
d2dmda3	29	g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {	5e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	9e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	7e-04
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	2e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	2e-04
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	3e-04
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	5e-04

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 4e-11
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 72  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
           +   +    + YKC+ C  S + SS L  H R HTG
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.9 bits (70), Expect = 0.004
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 101 HERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
            E +    + Y C +C  +FS         ++H
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (118), Expect = 4e-10
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
           H+GEKPY C  C  + ++SS L  H+R HTG
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 1e-09
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 78  TGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQ 114
           +  KPY C+ C    ++   L  H ++ HT ++P+ CQ
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 2e-05
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 55 YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCE 86
          Y C +C       + +  H+++ HT E+P+KC+
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (114), Expect = 2e-09
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 73  HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
             R  TG KP++C  C  S ++S  L +H ++H  
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (113), Expect = 3e-09
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 75  RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
           R H+GEKPY+C  C    TQS  +K+H  +   + 
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 3e-09
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 75  RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
           R HTGEKPY C +C  +  Q   L +H +++    
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.1 bits (99), Expect = 2e-07
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 77  HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
            +G++P+ C  C  + T  +    H + HT 
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 41.5 bits (98), Expect = 4e-07
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 81  KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
           + + CE C  +  +   LK H R HT +K
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (97), Expect = 6e-07
 Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 64  TLMSEDMKKHMRKHTGEKPYKCEYCA--YSCTQSSALKIHERKHTGDK 109
           TL    + K++ K   +K ++C +     +  +   ++ H + H  D+
Sbjct: 1   TLPRGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (97), Expect = 7e-07
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 80  EKPYKCEYCAYSCTQSSALKIHERKHTG 107
           +KP++C  C  + ++S  L  H R HTG
Sbjct: 1   QKPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 7e-07
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 81  KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
           K + C  C     +S  L  H + H   K
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.8 bits (70), Expect = 0.004
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
          + C  C    + S+ + KH++ H  +K
Sbjct: 3  FACPECPKRFMRSDHLSKHIKTHQNKK 29

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY 87
          S+     AC       + +K+HM+ H+  + Y CE+
Sbjct: 1  SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 83  YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 114
           + C    C  S      LK H + H+  + YIC+
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 2e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 81  KPYKCEY--CAYSCTQSSALKIHERKHTGDK 109
           +P+ C +  C    T+S  L+ H+R HTG+K
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 5e-05
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 80  EKPYKCEYCAYSCTQSSALKIHERKHTGD 108
           E+P+KC+ C Y+   SS L +H R HTGD
Sbjct: 1   ERPFKCQICPYASRNSSQLTVHLRSHTGD 29

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 9e-05
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 81  KPYKCEY--CAYSCTQSSALKIHERKHTGD 108
           KP+KC +  C  S ++   LK H R HTG+
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 80  EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
           +K Y C+ C  S T  S    H   H G +PY C  C   F   +     ++ H
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 7e-04
 Identities = 12/46 (26%), Positives = 15/46 (32%)

Query: 60  CDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
           C           +HM  H G +PY C  C         L  H + H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (79), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 81  KPYKCEY--CAYSCTQSSALKIHERKHTG 107
           +PY C    C    ++S+ L  H R HTG
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (79), Expect = 2e-04
 Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 80  EKPYKCEY--CAYSCTQSSALKIHERKHTG 107
           ++PY C++  C  +  ++  L  H++ H  
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 81  KPYKCEYCAYSCTQSSALKIHERKHT 106
           KPYKC  C  + +Q+S L  H+R HT
Sbjct: 1   KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 81  KPYKCEY--CAYSCTQSSALKIHERKHTGD 108
           KP++C +  C    +    L+ H R HTGD
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.81
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.76
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.5
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.49
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.45
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.45
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.44
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.38
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.34
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.33
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.32
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.3
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.27
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.26
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.23
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.21
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.2
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.18
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.14
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.13
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.13
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.1
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.09
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.08
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.01
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.98
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.97
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.96
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.93
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.91
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.88
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.86
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.85
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.85
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.7
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.68
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.63
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.56
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.43
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.38
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.26
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.22
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.22
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.19
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.1
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.09
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.09
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.05
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.03
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.02
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.99
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.98
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.89
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.85
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.82
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.79
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.76
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.72
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.7
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.65
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.52
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.52
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.45
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.41
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.36
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.34
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.34
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.24
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.21
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.21
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.19
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.13
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.05
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.98
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.98
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.93
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.9
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.88
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.88
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.85
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.59
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.57
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.42
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.35
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.27
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.21
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.14
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.97
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.63
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.53
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.46
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.34
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.24
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.2
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.18
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	95.11
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.09
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	94.69
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	94.52
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.22
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	94.03
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.94
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.02
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.01
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	92.6
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.26
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.88
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	91.78
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	91.02
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	91.02
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.64
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	90.37
d2dkta1	74	RING finger and CHY zinc finger domain-containing	90.3
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	90.17
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	90.13
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	90.06
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	90.0
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.9
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	89.35
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	88.91
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	88.76
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	88.55
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	88.46
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	87.95
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	87.91
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	87.12
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	86.85
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	86.48
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	85.61
d1fu9a_	36	U-shaped transcription factor, different fingers {	84.31
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	83.63
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	80.98

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5e-21  Score=98.71  Aligned_cols=53  Identities=30%  Similarity=0.563  Sum_probs=41.8

Q ss_pred             CCceeccccCccccCchhHHHHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507          80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |+||.|+ ||+.|.....|..|+++|++++||.|..||++|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4678884 8888888888888887888888888888888888888888888776

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.6e-19  Score=91.19  Aligned_cols=53  Identities=26%  Similarity=0.509  Sum_probs=50.7

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCccccCchhHHHHhhhc
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      +++|+|+ ||+.|.....|..|+++|++++||.|++||++|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5789995 9999999999999999999999999999999999999999999876

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.3e-15  Score=69.91  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             HhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         101 HERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       101 H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |.|+|+|++||+|..|++.|...++|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            6788999999999999999999999999999884

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.2e-15  Score=70.82  Aligned_cols=35  Identities=20%  Similarity=0.428  Sum_probs=28.6

Q ss_pred             HHhhhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         100 IHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       100 ~H~~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +|+++|++++||.|+.||++|...++|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            46778888888888888888888888888888885

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-14  Score=67.57  Aligned_cols=35  Identities=34%  Similarity=0.724  Sum_probs=23.1

Q ss_pred             CCceeccccCccccCchhHHHHhh-hcCCCCCeecC
Q psy3507          80 EKPYKCEYCAYSCTQSSALKIHER-KHTGDKPYICQ  114 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~  114 (134)
                      ++||.|++||+.|...++|..|++ +|++++||+|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            466666666666666666666654 46666666665

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-14  Score=67.06  Aligned_cols=32  Identities=38%  Similarity=0.776  Sum_probs=22.3

Q ss_pred             hhcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         103 RKHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       103 ~~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+|+|++||+|.+||++|...+.|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            45677777777777777777777777777663

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-14  Score=65.54  Aligned_cols=31  Identities=32%  Similarity=0.699  Sum_probs=22.2

Q ss_pred             hcCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         104 KHTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       104 ~h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +|++++||+|..||++|...+.|.+|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            3667777777777777777777777777774

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3e-14  Score=65.77  Aligned_cols=30  Identities=23%  Similarity=0.667  Sum_probs=22.3

Q ss_pred             cCCCCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         105 HTGDKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       105 h~~~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+|++||+|.+|++.|.++++|.+|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            567777777777777777777777777774

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=65.38  Aligned_cols=37  Identities=27%  Similarity=0.653  Sum_probs=34.2

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHH-HhcCCCceeccc
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCEY   87 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~   87 (134)
                      .++||+|+.||+.|...++|..|++ +|++++||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            5689999999999999999999986 699999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-14  Score=68.37  Aligned_cols=37  Identities=35%  Similarity=0.671  Sum_probs=33.0

Q ss_pred             HHHHHhcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        72 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      +|+++|++++||.|++||++|...++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3677899999999999999999999999999999886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=61.78  Aligned_cols=33  Identities=48%  Similarity=0.865  Sum_probs=25.8

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      +|++++||.|.+|+++|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            367788888888888888888888888888765

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.9e-13  Score=63.01  Aligned_cols=29  Identities=31%  Similarity=0.715  Sum_probs=20.8

Q ss_pred             hhcCCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507         103 RKHTGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       103 ~~h~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      |+|+|++||+|+.|++.|...++|.+|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            35777777777777777777777777754

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.1e-13  Score=59.65  Aligned_cols=27  Identities=26%  Similarity=0.640  Sum_probs=24.2

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+||+|+.|++.|..++.|.+|+++||
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.4e-13  Score=57.57  Aligned_cols=26  Identities=35%  Similarity=0.600  Sum_probs=23.3

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||+|.+||++|...+.|..|+++||
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999985

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-12  Score=61.17  Aligned_cols=34  Identities=38%  Similarity=0.725  Sum_probs=27.5

Q ss_pred             HHhcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        75 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      ++|+|++||.|.+|+++|...+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            3578888888888888888888888888888765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=4.8e-13  Score=62.74  Aligned_cols=35  Identities=34%  Similarity=0.662  Sum_probs=30.6

Q ss_pred             HHHHhcCCCceeccccCccccCchhHHHHhhhcCC
Q psy3507          73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        73 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      |.++|++++||.|++|++.|.++++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            55788999999999999999999999999988864

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.4e-12  Score=58.69  Aligned_cols=32  Identities=25%  Similarity=0.569  Sum_probs=22.5

Q ss_pred             hcCCCceeccccCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |+|++||.|++|++.|.+.++|..|+++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            46677777777777777777777777777654

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.21  E-value=3.2e-12  Score=56.44  Aligned_cols=27  Identities=33%  Similarity=0.674  Sum_probs=11.6

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      ||.|++|++.|.+.+.|..|+++|+||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            344444444444444444444444443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.20  E-value=3.9e-12  Score=56.14  Aligned_cols=26  Identities=19%  Similarity=0.648  Sum_probs=25.1

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|++||+.|...+.|.+|+++||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            69999999999999999999999996

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.9e-12  Score=55.46  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=13.3

Q ss_pred             ceeccccCccccCchhHHHHhhhcCCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      ||.|++|++.|.+++.|..|+++|+|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            444455555555555555554444444

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.8e-12  Score=57.91  Aligned_cols=26  Identities=35%  Similarity=0.649  Sum_probs=13.5

Q ss_pred             cCccccCchhHHHHhhhcCCCCCeec
Q psy3507          88 CAYSCTQSSALKIHERKHTGDKPYIC  113 (134)
Q Consensus        88 C~~~f~~~~~l~~H~~~h~~~~~~~C  113 (134)
                      |++.|.+...|..|+++|+|++||+|
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeC
Confidence            55555555555555555555555554

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.4e-12  Score=58.11  Aligned_cols=31  Identities=42%  Similarity=0.785  Sum_probs=23.2

Q ss_pred             HhcCCCceeccccCccccCchhHHHHhhhcC
Q psy3507          76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        76 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      +|+|++||.|++|++.|.+.++|..|++.++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            5777888888888888888888888865433

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=9.9e-13  Score=64.76  Aligned_cols=32  Identities=19%  Similarity=0.536  Sum_probs=18.6

Q ss_pred             hcCCCceeccc--cCccccCchhHHHHhhhcCCC
Q psy3507          77 HTGEKPYKCEY--CAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        77 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |.+++||.|++  |++.|...++|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            55555555544  555555555555555555554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=2.7e-11  Score=52.78  Aligned_cols=26  Identities=27%  Similarity=0.556  Sum_probs=13.7

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHT   78 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~   78 (134)
                      +||+|++|++.|..++.|..|+++|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            44555555555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.4e-12  Score=64.21  Aligned_cols=38  Identities=26%  Similarity=0.499  Sum_probs=32.5

Q ss_pred             hhHHHHhhhcCCCCCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507          96 SALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        96 ~~l~~H~~~h~~~~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      ..|..|++ |++++||.|..  |++.|...++|.+|+++|+
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            45566764 99999999977  9999999999999999996

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.2e-11  Score=55.77  Aligned_cols=32  Identities=28%  Similarity=0.737  Sum_probs=30.2

Q ss_pred             eeeCC--CCCccCChHHHHHHHHHhcCCCceecc
Q psy3507          55 YTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE   86 (134)
Q Consensus        55 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~   86 (134)
                      |.|+.  |++.|...+.|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67876  999999999999999999999999997

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.6e-11  Score=52.53  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=27.2

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCC
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEK   81 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   81 (134)
                      +||.|++|++.|..++.|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999999875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.5e-11  Score=52.15  Aligned_cols=26  Identities=38%  Similarity=0.736  Sum_probs=22.9

Q ss_pred             CCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|+.  |+++|...+.|++|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            5889988  9999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.7e-11  Score=50.11  Aligned_cols=24  Identities=25%  Similarity=0.535  Sum_probs=12.1

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHh
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      ||+|++||+.|...+.|..|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            445555555555555555555444

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9e-11  Score=51.97  Aligned_cols=26  Identities=31%  Similarity=0.681  Sum_probs=22.6

Q ss_pred             CCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|+.  |+++|...+.|.+|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            5889977  9999999999999999885

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=1.2e-10  Score=52.21  Aligned_cols=27  Identities=30%  Similarity=0.625  Sum_probs=21.3

Q ss_pred             CCCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      |+||.|..  |++.|...+.|.+|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            57788877  8888888888888888875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.7e-10  Score=50.32  Aligned_cols=26  Identities=46%  Similarity=0.847  Sum_probs=13.1

Q ss_pred             ceeccc--cCccccCchhHHHHhhhcCC
Q psy3507          82 PYKCEY--CAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        82 ~~~C~~--C~~~f~~~~~l~~H~~~h~~  107 (134)
                      ||.|+.  |+++|.+.+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            444544  55555555555555555544

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.6e-11  Score=51.15  Aligned_cols=26  Identities=23%  Similarity=0.756  Sum_probs=20.3

Q ss_pred             CCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|+.  ||++|...++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5777876  8888888888888888775

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=2.4e-10  Score=50.08  Aligned_cols=26  Identities=27%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             CCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|..  |++.|.+.+.|.+|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            5888877  8888888888888888884

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1e-09  Score=48.44  Aligned_cols=26  Identities=27%  Similarity=0.643  Sum_probs=14.4

Q ss_pred             ceeeCC--CCCccCChHHHHHHHHHhcC
Q psy3507          54 KYTCYA--CDYHTLMSEDMKKHMRKHTG   79 (134)
Q Consensus        54 ~~~C~~--C~~~f~~~~~l~~H~~~h~~   79 (134)
                      ||.|++  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            455544  55555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.1e-10  Score=49.19  Aligned_cols=21  Identities=43%  Similarity=0.770  Sum_probs=9.8

Q ss_pred             cCccccCchhHHHHhhhcCCC
Q psy3507          88 CAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        88 C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      |++.|.+.++|..|+++|+|+
T Consensus        10 C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_          10 CGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCcCChhHhhhhcCccccc
Confidence            444444444444444444443

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.4e-10  Score=49.55  Aligned_cols=26  Identities=19%  Similarity=0.632  Sum_probs=24.1

Q ss_pred             CCeecC--cChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQ--QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~--~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|+  .|++.|...++|.+|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            689996  59999999999999999996

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=2e-09  Score=45.03  Aligned_cols=27  Identities=22%  Similarity=0.485  Sum_probs=23.4

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||.|..||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            578999999999999999999988883

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=6.9e-09  Score=46.33  Aligned_cols=28  Identities=25%  Similarity=0.701  Sum_probs=17.6

Q ss_pred             CCceeccc--cCccccCchhHHHHhhhcCC
Q psy3507          80 EKPYKCEY--CAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        80 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  107 (134)
                      ++||.|++  |++.|.+.+.|..|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            35666655  66666666666666666654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=3e-09  Score=46.43  Aligned_cols=25  Identities=40%  Similarity=0.739  Sum_probs=13.0

Q ss_pred             ceeccc--cCccccCchhHHHHhhhcC
Q psy3507          82 PYKCEY--CAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        82 ~~~C~~--C~~~f~~~~~l~~H~~~h~  106 (134)
                      ||.|++  |++.|.+.+.|..|+++|+
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccC
Confidence            455544  5555555555555555554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.1e-08  Score=41.45  Aligned_cols=25  Identities=24%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      |.+|+.|++.|+.+..|..|++.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5678888888888888888888875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-08  Score=44.18  Aligned_cols=26  Identities=38%  Similarity=0.779  Sum_probs=15.1

Q ss_pred             Cceeccc--cCccccCchhHHHHhhhcC
Q psy3507          81 KPYKCEY--CAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  106 (134)
                      +||.|+.  |++.|.+.++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            3555655  6666666666666665553

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.8e-08  Score=41.48  Aligned_cols=31  Identities=35%  Similarity=0.679  Sum_probs=22.0

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCCCCe
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPY  111 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  111 (134)
                      +...|+.||+.|.....|.+|...|.+++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3456777777777777777777777777776

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.7e-08  Score=38.87  Aligned_cols=23  Identities=43%  Similarity=0.733  Sum_probs=11.6

Q ss_pred             eccccCccccCchhHHHHhhhcC
Q psy3507          84 KCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      +|+.|++.|+++..|..|++.|+
T Consensus         3 kc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             ccchhhhHhcchhHHHHHhhccC
Confidence            44555555555555555555444

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.2e-07  Score=39.56  Aligned_cols=25  Identities=32%  Similarity=0.725  Sum_probs=13.4

Q ss_pred             CceeccccCccccCchhHHHHhhhc
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKH  105 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h  105 (134)
                      +||.|++||+.|.......+|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4555555555555555555555544

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.2e-07  Score=39.28  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=21.3

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ++||+|..|...-...+.|..|++.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            467888888888788888888888775

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.3e-07  Score=40.02  Aligned_cols=26  Identities=31%  Similarity=0.609  Sum_probs=21.5

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhc
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      ++||.|++|+..|..+..+.-|.++|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            57888888888888888888888877

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.8e-07  Score=37.70  Aligned_cols=27  Identities=48%  Similarity=1.072  Sum_probs=16.5

Q ss_pred             CceeccccCccccCchhHHHHhhhcCC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      +||+|.+|...-...+.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            456666666666666666666666655

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6e-07  Score=37.93  Aligned_cols=29  Identities=28%  Similarity=0.592  Sum_probs=20.5

Q ss_pred             CcceeeCCCCCccCChHHHHHHHHHhcCC
Q psy3507          52 SYKYTCYACDYHTLMSEDMKKHMRKHTGE   80 (134)
Q Consensus        52 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   80 (134)
                      ++||.|++|...|..+..+..|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            35677777777777777777777777653

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5e-07  Score=37.04  Aligned_cols=26  Identities=27%  Similarity=0.584  Sum_probs=22.1

Q ss_pred             CCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||+|..|+..-...++|..|+++|+
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68888888888888888888888884

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.2e-07  Score=41.19  Aligned_cols=26  Identities=35%  Similarity=0.618  Sum_probs=21.9

Q ss_pred             CCCCCeecCcChhhhcCHHHHHHHHH
Q psy3507         106 TGDKPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       106 ~~~~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      +|.+||.|..|++.|.++.++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46789999999999999999988863

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4.9e-07  Score=37.17  Aligned_cols=25  Identities=16%  Similarity=0.402  Sum_probs=20.3

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .+.|..||+.|...+.|++|+.+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            3578888888888888888888875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.8e-07  Score=39.12  Aligned_cols=32  Identities=28%  Similarity=0.508  Sum_probs=29.0

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCCCcee
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYK   84 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   84 (134)
                      +...|+.||+.|.....|.+|...|++++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            45679999999999999999999999999973

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.1e-06  Score=37.02  Aligned_cols=25  Identities=24%  Similarity=0.752  Sum_probs=20.2

Q ss_pred             CCeecCc--ChhhhcCHHHHHHHHHhc
Q psy3507         109 KPYICQQ--CRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       109 ~~~~C~~--C~~~F~~~~~l~~H~~~H  133 (134)
                      +||.|..  |++++...++|++|++++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            5788877  888888888888888853

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.09  E-value=1.1e-06  Score=36.43  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=21.4

Q ss_pred             CCeecCc--ChhhhcCHHHHHHHHHhc
Q psy3507         109 KPYICQQ--CRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       109 ~~~~C~~--C~~~F~~~~~l~~H~~~H  133 (134)
                      .||+|+.  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788876  899999999999998887

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.09  E-value=9.3e-07  Score=35.27  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=18.7

Q ss_pred             eecCcChhhhcCHHHHHHHHHhc
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |+|..|.+.|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57888888888888888888876

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=1.4e-06  Score=35.31  Aligned_cols=24  Identities=46%  Similarity=0.682  Sum_probs=12.2

Q ss_pred             eCCCCCccCChHHHHHHHHHhcCC
Q psy3507          57 CYACDYHTLMSEDMKKHMRKHTGE   80 (134)
Q Consensus        57 C~~C~~~f~~~~~l~~H~~~h~~~   80 (134)
                      |+.|.+.|.++..|+.|-+.|+|+
T Consensus         3 cp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             CcchHHHHHHhHhhhhccccccCC
Confidence            455555555555555555555443

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.9e-06  Score=34.77  Aligned_cols=26  Identities=35%  Similarity=0.659  Sum_probs=14.3

Q ss_pred             eeeCCCCCccCChHHHHHHHHHhcCC
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRKHTGE   80 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~h~~~   80 (134)
                      |.|+.|+.....++-|+.|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            45555555555555555555555543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2e-06  Score=35.65  Aligned_cols=27  Identities=41%  Similarity=0.677  Sum_probs=19.4

Q ss_pred             eeccccCccccCchhHHHHhhhcCCCC
Q psy3507          83 YKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      |.|+.|+.....++-|+.|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            567777777777777777777777653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.1e-06  Score=34.74  Aligned_cols=24  Identities=42%  Similarity=0.649  Sum_probs=13.8

Q ss_pred             eccccCccccCchhHHHHhhhcCC
Q psy3507          84 KCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      .|..||++|...+.|++|..+|+|
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            455555555555555555555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=5.1e-06  Score=33.59  Aligned_cols=27  Identities=41%  Similarity=0.717  Sum_probs=24.2

Q ss_pred             eeccccCccccCchhHHHHhhhcCCCC
Q psy3507          83 YKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      .+|+.|.+.|.++..|..|-+.|+|++
T Consensus         1 vqcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           1 VECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CcCcchHHHHHHhHhhhhccccccCCC
Confidence            058999999999999999999999975

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.89  E-value=3.5e-06  Score=35.82  Aligned_cols=21  Identities=29%  Similarity=0.641  Sum_probs=16.0

Q ss_pred             CeecCcChhhhcCHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~  130 (134)
                      ||.|..|++.|..+..|.+|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~   21 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHA   21 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHHH
Confidence            677777777777777777775

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=7.5e-06  Score=33.87  Aligned_cols=26  Identities=27%  Similarity=0.638  Sum_probs=12.9

Q ss_pred             ceeccccCccccCchhHHHHhhhcCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      .|.|..|...|.++..|+.|+..|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            34455555555555555555544444

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.8e-06  Score=34.39  Aligned_cols=24  Identities=33%  Similarity=0.726  Sum_probs=12.8

Q ss_pred             ceeccc--cCccccCchhHHHHhhhc
Q psy3507          82 PYKCEY--CAYSCTQSSALKIHERKH  105 (134)
Q Consensus        82 ~~~C~~--C~~~f~~~~~l~~H~~~h  105 (134)
                      ||.|.+  |++.+..+++|+.|++.+
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhh
Confidence            455544  555555555555555543

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=1.2e-05  Score=36.31  Aligned_cols=28  Identities=25%  Similarity=0.479  Sum_probs=18.2

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcCC
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTGE   80 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   80 (134)
                      +.|+|.+|++.|.+..+|-.||+.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            3566777777777777777776666543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=8e-06  Score=33.83  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=19.4

Q ss_pred             CeecCcChhhhcCHHHHHHHHHh
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQS  132 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~  132 (134)
                      ||.|..|...|.+..+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68888888888888888888864

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.72  E-value=1.1e-05  Score=32.09  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=11.0

Q ss_pred             eeCCCCCccCChHHHHHHHHHh
Q psy3507          56 TCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        56 ~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      +|..|.++|..++.|.+|+++|
T Consensus         2 kcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGT
T ss_pred             cccchHHHHHHHHHHHHHHHhh
Confidence            4445555555555555554444

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=1.7e-05  Score=32.81  Aligned_cols=27  Identities=26%  Similarity=0.610  Sum_probs=24.9

Q ss_pred             CCCeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      +..|.|..|...|..+-.|+.||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            567999999999999999999999885

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.65  E-value=2.3e-05  Score=35.32  Aligned_cols=29  Identities=28%  Similarity=0.614  Sum_probs=21.1

Q ss_pred             CceeccccCccccCchhHHHHhhhcCCCC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHTGDK  109 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  109 (134)
                      +.|.|.+|++.|.+..+|--|++.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            45777777777777777777777776543

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4.8e-05  Score=31.57  Aligned_cols=23  Identities=26%  Similarity=0.792  Sum_probs=13.2

Q ss_pred             ceeeCCCCCccCChHHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRK   76 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~   76 (134)
                      ||.|..|.......++|+.|+++
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            45555555555555555555554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=6.1e-05  Score=30.67  Aligned_cols=26  Identities=38%  Similarity=0.812  Sum_probs=16.5

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHT   78 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~   78 (134)
                      +||+|..|...-...++|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            45666666666666666666666653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.45  E-value=8.5e-05  Score=30.56  Aligned_cols=24  Identities=29%  Similarity=0.665  Sum_probs=13.6

Q ss_pred             ceeeCC--CCCccCChHHHHHHHHHh
Q psy3507          54 KYTCYA--CDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        54 ~~~C~~--C~~~f~~~~~l~~H~~~h   77 (134)
                      ||.|+.  |++.|..++.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            455543  556666666666665554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.41  E-value=5e-05  Score=32.17  Aligned_cols=26  Identities=35%  Similarity=0.735  Sum_probs=16.9

Q ss_pred             ceeccccCccccCchhHHHHhh-hcCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHER-KHTG  107 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~-~h~~  107 (134)
                      ||.|.+|++.|.++.-|.+|.. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            5677777777777777777743 3544

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00013  Score=30.24  Aligned_cols=26  Identities=38%  Similarity=0.880  Sum_probs=23.2

Q ss_pred             CceeccccCccccCchhHHHHhhhcC
Q psy3507          81 KPYKCEYCAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~h~  106 (134)
                      +||+|..|.......++|..|+++.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            58999999999999999999998743

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=1.4e-05  Score=33.91  Aligned_cols=24  Identities=29%  Similarity=0.732  Sum_probs=11.1

Q ss_pred             CeecCc--ChhhhcCHHHHHHHH-Hhc
Q psy3507         110 PYICQQ--CRDTFSSLYLFRNRL-QSH  133 (134)
Q Consensus       110 ~~~C~~--C~~~F~~~~~l~~H~-~~H  133 (134)
                      ||.|+.  |.|+|+..+.-.+|+ ++|
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CccccCCChhhhhcchhhhhhhccccc
Confidence            444444  444444444444443 444

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0001  Score=30.43  Aligned_cols=23  Identities=26%  Similarity=0.706  Sum_probs=14.5

Q ss_pred             ceeeCCCCCccCChHHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRK   76 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~   76 (134)
                      ||.|..|...|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45666666666666666666653

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.0001  Score=29.19  Aligned_cols=21  Identities=24%  Similarity=0.679  Sum_probs=18.3

Q ss_pred             CeecCcChhhhcCHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~  130 (134)
                      ||+|..|...|..+..|+.|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            788888888888888888886

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00012  Score=33.18  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=19.1

Q ss_pred             CCCceeccccCccccCchhHHHHhh
Q psy3507          79 GEKPYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |-+||.|.+|++.|..+.++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5678888888888888888877754

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=9.9e-05  Score=31.22  Aligned_cols=26  Identities=38%  Similarity=0.787  Sum_probs=16.6

Q ss_pred             Cceeccc--cCccccCchhHHHHh-hhcC
Q psy3507          81 KPYKCEY--CAYSCTQSSALKIHE-RKHT  106 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~  106 (134)
                      +||.|+.  |.++|+..+....|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3566655  677777776666665 5554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00014  Score=32.44  Aligned_cols=26  Identities=27%  Similarity=0.664  Sum_probs=14.1

Q ss_pred             CCCeec--CcChhhhcCHHHHHHHHHhc
Q psy3507         108 DKPYIC--QQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       108 ~~~~~C--~~C~~~F~~~~~l~~H~~~H  133 (134)
                      ++||.|  +-|+..|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            455555  23555555555555555444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00012  Score=34.40  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=18.6

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhcC
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .|.|..|||.|.....|+.|...|+
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4677778888887777877777663

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00017  Score=29.19  Aligned_cols=22  Identities=14%  Similarity=0.394  Sum_probs=17.9

Q ss_pred             CeecCcChhhhcCHHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      ||+|..||+.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6888888888888888888853

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=29.61  Aligned_cols=19  Identities=42%  Similarity=1.039  Sum_probs=7.6

Q ss_pred             eeccccCccccCchhHHHH
Q psy3507          83 YKCEYCAYSCTQSSALKIH  101 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H  101 (134)
                      |+|..|...-.++++|..|
T Consensus         3 FkC~~CsFDtkq~SnL~kH   21 (29)
T d1x5wa2           3 FKCNYCSFDTKQPSNLSKH   21 (29)
T ss_dssp             EECSSSSCEESSHHHHHHH
T ss_pred             cccceecccccCcchHHHH
Confidence            3444444333333444443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.98  E-value=0.00023  Score=29.38  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=7.9

Q ss_pred             cCccccCchhHHHHhhhcC
Q psy3507          88 CAYSCTQSSALKIHERKHT  106 (134)
Q Consensus        88 C~~~f~~~~~l~~H~~~h~  106 (134)
                      |++.|.+...|.+|..+|+
T Consensus        10 c~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhcccc
Confidence            4444444444444433333

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00061  Score=30.36  Aligned_cols=27  Identities=19%  Similarity=0.416  Sum_probs=16.6

Q ss_pred             Ccceee--CCCCCccCChHHHHHHHHHhc
Q psy3507          52 SYKYTC--YACDYHTLMSEDMKKHMRKHT   78 (134)
Q Consensus        52 ~~~~~C--~~C~~~f~~~~~l~~H~~~h~   78 (134)
                      ++||.|  +-|+.+|.+...|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            456666  346666666666666665553

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0004  Score=28.25  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=16.3

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhc
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      |-+|+.|.....++..|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            446677777777777777777666

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0006  Score=28.09  Aligned_cols=27  Identities=30%  Similarity=0.727  Sum_probs=23.2

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhcC
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHTG   79 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   79 (134)
                      +||+|..|.......++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            489999999999999999999985444

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00041  Score=28.32  Aligned_cols=19  Identities=32%  Similarity=0.691  Sum_probs=17.0

Q ss_pred             ChhhhcCHHHHHHHHHhcC
Q psy3507         116 CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       116 C~~~F~~~~~l~~H~~~H~  134 (134)
                      |++.|+..+.+++|+-+|+
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            8899999999999998885

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.85  E-value=0.00012  Score=30.23  Aligned_cols=26  Identities=31%  Similarity=0.709  Sum_probs=22.8

Q ss_pred             CCeecCc--ChhhhcCHHHHHHHHHhcC
Q psy3507         109 KPYICQQ--CRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       109 ~~~~C~~--C~~~F~~~~~l~~H~~~H~  134 (134)
                      +||.|..  |.+.|.+...|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            5788875  9999999999999998874

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.001  Score=26.16  Aligned_cols=22  Identities=27%  Similarity=0.718  Sum_probs=14.3

Q ss_pred             ceeeCCCCCccCChHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~   75 (134)
                      ||+|..|...|-.+.+|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00061  Score=29.40  Aligned_cols=22  Identities=18%  Similarity=0.609  Sum_probs=18.9

Q ss_pred             CeecCcChhhhcCHHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      .|.|..||++|..+..+.+|..
T Consensus         4 afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhh
Confidence            5889999999999999988864

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00093  Score=26.96  Aligned_cols=22  Identities=27%  Similarity=0.603  Sum_probs=17.5

Q ss_pred             ceeccccCccccCchhHHHHhh
Q psy3507          82 PYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      ||+|..||+.+.++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5788888888888888888754

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.35  E-value=0.0014  Score=25.91  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=17.5

Q ss_pred             eecCcChhhhcCHHHHHHHHHh
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQS  132 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~~  132 (134)
                      |.|+.|-+.|..+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6788888888888888888754

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0024  Score=25.86  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=10.9

Q ss_pred             eeCCCCCccCChHHHHHHHHHh
Q psy3507          56 TCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        56 ~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      +|+.|+.+.+++..|+.|.++|
T Consensus         4 kc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGG
T ss_pred             cCcccccccCcHHHHHHhhccc
Confidence            4455555555555555554444

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0019  Score=26.10  Aligned_cols=23  Identities=13%  Similarity=0.362  Sum_probs=18.3

Q ss_pred             CeecCcChhhhcCHHHHHHHHHh
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQS  132 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~  132 (134)
                      .|+|+.|+-....++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            47888888888888888888753

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.14  E-value=0.0033  Score=24.76  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=17.5

Q ss_pred             eeeCCCCCccCChHHHHHHHHH
Q psy3507          55 YTCYACDYHTLMSEDMKKHMRK   76 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~~   76 (134)
                      |+|+.|-+.|..+.++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6788888888888888888764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0035  Score=29.25  Aligned_cols=26  Identities=15%  Similarity=0.255  Sum_probs=21.3

Q ss_pred             cceeeCCCCCccCChHHHHHHHHHhc
Q psy3507          53 YKYTCYACDYHTLMSEDMKKHMRKHT   78 (134)
Q Consensus        53 ~~~~C~~C~~~f~~~~~l~~H~~~h~   78 (134)
                      ..|.|..|++.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35789999999999999999887763

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0025  Score=27.66  Aligned_cols=17  Identities=35%  Similarity=0.405  Sum_probs=8.0

Q ss_pred             ccCChHHHHHHHHHhcC
Q psy3507          63 HTLMSEDMKKHMRKHTG   79 (134)
Q Consensus        63 ~f~~~~~l~~H~~~h~~   79 (134)
                      .|.....|..||++|+|
T Consensus        16 pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          16 PFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CCSSHHHHHHHTHHHHC
T ss_pred             cchhHHHHHHHHhhcCC
Confidence            34444444444444444

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.015  Score=23.70  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=16.9

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHh
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKH   77 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h   77 (134)
                      .|.|..|++...+...++.|+...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEeec
Confidence            467777777777777777776543

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.46  E-value=0.0036  Score=26.64  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=17.9

Q ss_pred             CeecCcChhhhcCHHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      .|-|.-||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4788888888888888888863

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0091  Score=24.02  Aligned_cols=21  Identities=29%  Similarity=0.630  Sum_probs=12.7

Q ss_pred             eeeCCCCCccCChHHHHHHHH
Q psy3507          55 YTCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        55 ~~C~~C~~~f~~~~~l~~H~~   75 (134)
                      |.|+.|+-....+++|..|++
T Consensus         3 ~qcphc~tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhh
Confidence            556666666666666666655

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0074  Score=26.11  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.1

Q ss_pred             cCccccCchhHHHHhhhcCCC
Q psy3507          88 CAYSCTQSSALKIHERKHTGD  108 (134)
Q Consensus        88 C~~~f~~~~~l~~H~~~h~~~  108 (134)
                      =++.|.....|..|+|+|+||
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            356789999999999999986

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.20  E-value=0.0044  Score=24.80  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=14.4

Q ss_pred             cChhhhcCHHHHHHHHHhcC
Q psy3507         115 QCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus       115 ~C~~~F~~~~~l~~H~~~H~  134 (134)
                      .|++.|.....|+.|+-+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            47777777777777776653

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0031  Score=32.24  Aligned_cols=21  Identities=14%  Similarity=0.347  Sum_probs=14.9

Q ss_pred             eecCcChhhhcCHHHHHHHHH
Q psy3507         111 YICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       111 ~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      |.|..|++.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            667777777777777777764

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0071  Score=30.31  Aligned_cols=35  Identities=14%  Similarity=0.394  Sum_probs=18.0

Q ss_pred             ceeeCCCCCccCChHHHHHHHHHhcCCCceeccccCcc
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS   91 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   91 (134)
                      .|.|+.|++.|..-..+.   ..-.....|.|..|+..
T Consensus        14 ~y~Cp~C~~~ys~Lda~~---L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          14 SFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCB
T ss_pred             ceECCCCCCCcchhhHHH---hcCcCCCeEEecCCCCE
Confidence            466666666665433322   23333345666666643

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0092  Score=25.57  Aligned_cols=26  Identities=19%  Similarity=0.534  Sum_probs=17.1

Q ss_pred             ceeccccCccccCchhHHHHhhhcCC
Q psy3507          82 PYKCEYCAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~h~~  107 (134)
                      .|.|..|++.|.++..+.+|...-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            36777777777777777777655443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0096  Score=29.72  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=15.8

Q ss_pred             CeecCcChhhhcCHHHHHHHHHhc
Q psy3507         110 PYICQQCRDTFSSLYLFRNRLQSH  133 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~~~H  133 (134)
                      .|+|.+|+..|.+...|..|+..|
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhc
Confidence            466666666666666666666555

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.52  E-value=0.021  Score=26.49  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=9.4

Q ss_pred             ceeccccCccccCchhHHHHhh
Q psy3507          82 PYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |-.|++|+....+..+|.+|+.
T Consensus        24 patcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          24 PATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHH
Confidence            3444444444444444444433

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.22  E-value=0.015  Score=25.90  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=15.1

Q ss_pred             ccccCCCCCCcccCCCCcceeeCCCCC
Q psy3507          36 LMYHCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        36 ~~~~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      +.|.|..||..+.  ++.|-.|++|+.
T Consensus         4 ~~~~C~vCG~i~~--g~~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGYTAV--DEAPEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCCEEE--SCCCSBCTTTCC
T ss_pred             cEEECCCCCCEec--CCCCCcCCCCCC
Confidence            4466777776654  345566776664

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.03  E-value=0.023  Score=26.35  Aligned_cols=26  Identities=19%  Similarity=0.430  Sum_probs=23.1

Q ss_pred             CCCCeecCcChhhhcCHHHHHHHHHh
Q psy3507         107 GDKPYICQQCRDTFSSLYLFRNRLQS  132 (134)
Q Consensus       107 ~~~~~~C~~C~~~F~~~~~l~~H~~~  132 (134)
                      .+.|-.|+.|+.......+|++|+..
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999853

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.94  E-value=0.021  Score=24.16  Aligned_cols=22  Identities=14%  Similarity=0.486  Sum_probs=16.3

Q ss_pred             ceeeCCCCCccCChHHHHHHHH
Q psy3507          54 KYTCYACDYHTLMSEDMKKHMR   75 (134)
Q Consensus        54 ~~~C~~C~~~f~~~~~l~~H~~   75 (134)
                      .|.|.-||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4778888888888887777753

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.02  E-value=0.03  Score=23.19  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=10.7

Q ss_pred             cCccccCchhHHHHhhhcCC
Q psy3507          88 CAYSCTQSSALKIHERKHTG  107 (134)
Q Consensus        88 C~~~f~~~~~l~~H~~~h~~  107 (134)
                      |+..|...-.|..|+-.|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            55555555555555555544

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.013  Score=29.76  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=15.4

Q ss_pred             ceeccccCccccCchhHHHHhh
Q psy3507          82 PYKCEYCAYSCTQSSALKIHER  103 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      .|-|..|++.|.+...|..|.+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            3667777777777777777765

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.60  E-value=0.034  Score=24.54  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=14.1

Q ss_pred             CccccCCCCCCcccCCCCcceeeCCCCC
Q psy3507          35 ELMYHCKTCSTVSHPNISYKYTCYACDY   62 (134)
Q Consensus        35 ~~~~~C~~C~~~f~~~~~~~~~C~~C~~   62 (134)
                      ++.|.|..||....  ++.|-+|++|+.
T Consensus         3 ~~~~vC~vCGyi~~--g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIHK--GEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEEE--SSCCSBCTTTCC
T ss_pred             CCEEECCCCCCEee--CCCCCcCCCCCC
Confidence            34466666666543  234555666654

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.26  E-value=0.038  Score=23.64  Aligned_cols=23  Identities=17%  Similarity=0.599  Sum_probs=15.7

Q ss_pred             CCCeecCcChhhhcCHHHHHHHH
Q psy3507         108 DKPYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus       108 ~~~~~C~~C~~~F~~~~~l~~H~  130 (134)
                      +..|.|..|.+.+..-+++-+|.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHy   28 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHY   28 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHH
Confidence            34577777777777777777764

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.061  Score=26.74  Aligned_cols=28  Identities=18%  Similarity=0.562  Sum_probs=14.6

Q ss_pred             CccccCCCCCCccc--------CCCCcceeeCCCCC
Q psy3507          35 ELMYHCKTCSTVSH--------PNISYKYTCYACDY   62 (134)
Q Consensus        35 ~~~~~C~~C~~~f~--------~~~~~~~~C~~C~~   62 (134)
                      ...|.|+.|+++|.        ......|.|..|+.
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHHhcCcCCCeEEecCCCC
Confidence            34466666666665        23333456666553

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.78  E-value=0.043  Score=24.39  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             cCCCCCCcccCCCCcceeeCCCCCccC
Q psy3507          39 HCKTCSTVSHPNISYKYTCYACDYHTL   65 (134)
Q Consensus        39 ~C~~C~~~f~~~~~~~~~C~~C~~~f~   65 (134)
                      .|+.|+..|.......+.|+.|+..+.
T Consensus         5 ~CP~C~seytYedg~l~vCPeC~hEW~   31 (38)
T d2akla2           5 PCPQCNSEYTYEDGALLVCPECAHEWS   31 (38)
T ss_dssp             CCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred             cCCCCCCcceEcCCCEEECCcccCcCC
Confidence            488888888877777788888886554

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.02  E-value=0.062  Score=25.85  Aligned_cols=12  Identities=25%  Similarity=0.836  Sum_probs=7.4

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|+|..||..|.
T Consensus         3 ky~C~~CgyiYd   14 (53)
T d1iroa_           3 KYTCTVCGYIYN   14 (53)
T ss_dssp             CEEETTTCCEEC
T ss_pred             CeEcCCCCcEEC
Confidence            366666666665

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=91.02  E-value=0.056  Score=25.07  Aligned_cols=7  Identities=29%  Similarity=1.103  Sum_probs=3.9

Q ss_pred             eeccccC
Q psy3507          83 YKCEYCA   89 (134)
Q Consensus        83 ~~C~~C~   89 (134)
                      |.|++|+
T Consensus        30 w~CP~C~   36 (45)
T d6rxna_          30 WCCPVCG   36 (45)
T ss_dssp             CBCTTTC
T ss_pred             CCCcCCC
Confidence            5555555

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.18  Score=24.93  Aligned_cols=29  Identities=21%  Similarity=0.508  Sum_probs=24.0

Q ss_pred             CCcceeeCCCCCccCChHHHHHHHHHhcC
Q psy3507          51 ISYKYTCYACDYHTLMSEDMKKHMRKHTG   79 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   79 (134)
                      ....|.|..|+..|.+...|..|+..|..
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhccH
Confidence            34569999999999999999999888753

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=90.37  E-value=0.031  Score=33.57  Aligned_cols=38  Identities=26%  Similarity=0.615  Sum_probs=27.2

Q ss_pred             hhHHHHhhhc--CCCC-----CeecCcChhhhcCHHHHHHHHHhcC
Q psy3507          96 SALKIHERKH--TGDK-----PYICQQCRDTFSSLYLFRNRLQSHG  134 (134)
Q Consensus        96 ~~l~~H~~~h--~~~~-----~~~C~~C~~~F~~~~~l~~H~~~H~  134 (134)
                      ..|..|++..  .|..     -|+|..||+ +..-.+|.+||+.|+
T Consensus       125 grlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         125 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             HHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHcC
Confidence            4577787642  3332     279999997 566788999999885

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.30  E-value=0.083  Score=27.20  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=11.6

Q ss_pred             ccccCCCCCCcccCCCCcceeeCCCCCcc
Q psy3507          36 LMYHCKTCSTVSHPNISYKYTCYACDYHT   64 (134)
Q Consensus        36 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~f   64 (134)
                      +...|..||....    .+-.|+.|+..|
T Consensus        50 ~~l~CH~Cg~~~~----~~~~C~~Cgs~F   74 (74)
T d2dkta1          50 KEVQCINCEKLQH----AQQTCEDCSTLF   74 (74)
T ss_dssp             CCEEESSSCCEEC----SCSBCSSSCCBS
T ss_pred             CEEEeccCCCccc----CCCcCCCCCCCC
Confidence            4455555555432    122355555443

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=90.17  E-value=0.052  Score=24.07  Aligned_cols=11  Identities=9%  Similarity=0.060  Sum_probs=5.5

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      +.|+.||..|.
T Consensus         3 ~vc~~cG~~Yh   13 (37)
T d2ak3a2           3 WIHPGSGRVYN   13 (37)
T ss_dssp             EEETTTTEEEE
T ss_pred             eeeCCcCChhh
Confidence            34555555554

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.15  Score=21.80  Aligned_cols=23  Identities=22%  Similarity=0.605  Sum_probs=17.5

Q ss_pred             CCeecCcChhhhcCHHHHHHHHH
Q psy3507         109 KPYICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       109 ~~~~C~~C~~~F~~~~~l~~H~~  131 (134)
                      +-|.|+.|-+-..+...|++|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            45778888888888888888874

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=90.06  E-value=0.046  Score=26.62  Aligned_cols=13  Identities=31%  Similarity=0.759  Sum_probs=7.7

Q ss_pred             ccccCCCCCCccc
Q psy3507          36 LMYHCKTCSTVSH   48 (134)
Q Consensus        36 ~~~~C~~C~~~f~   48 (134)
                      +.|+|..||..+.
T Consensus         3 kky~C~~CgyiYd   15 (56)
T d1s24a_           3 LKWICITCGHIYD   15 (56)
T ss_dssp             CEEEETTTTEEEE
T ss_pred             ccEECCCCCcEEC
Confidence            3466666666654

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.00  E-value=0.11  Score=28.51  Aligned_cols=28  Identities=21%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             cccCCCCCCcccCCCCcceeeCCCCCcc
Q psy3507          37 MYHCKTCSTVSHPNISYKYTCYACDYHT   64 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~~~~~C~~C~~~f   64 (134)
                      |-.|..||..|.....+|-.|+.|...+
T Consensus        67 Pp~CrkCGfvFr~~~kkPSRCP~CKSE~   94 (105)
T d2gmga1          67 PAQCRKCGFVFKAEINIPSRCPKCKSEW   94 (105)
T ss_dssp             CCBBTTTCCBCCCCSSCCSSCSSSCCCC
T ss_pred             ChhhhhcCCeecccCCCCCCCCCCCCcc
Confidence            4568888888865556677888886543

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.90  E-value=0.18  Score=20.41  Aligned_cols=15  Identities=13%  Similarity=0.388  Sum_probs=7.5

Q ss_pred             ChhhhcCHHHHHHHH
Q psy3507         116 CRDTFSSLYLFRNRL  130 (134)
Q Consensus       116 C~~~F~~~~~l~~H~  130 (134)
                      |+-.|.++.+++.|.
T Consensus        10 cdl~fttkanmkkhf   24 (31)
T d1tf3a3          10 CDLRFTTKANMKKHF   24 (31)
T ss_dssp             CCCEESSHHHHHHHH
T ss_pred             cceEEeehHHHHHHH
Confidence            444555555555543

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.076  Score=22.94  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=17.9

Q ss_pred             CeecCcChhhhcCHHHHHHHH
Q psy3507         110 PYICQQCRDTFSSLYLFRNRL  130 (134)
Q Consensus       110 ~~~C~~C~~~F~~~~~l~~H~  130 (134)
                      ...|-.|-++|.+..++.+|+
T Consensus         3 kltclecmrtfkssfsiwrhq   23 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQ   23 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhh
Confidence            357888999999999999997

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=88.91  E-value=0.12  Score=24.72  Aligned_cols=12  Identities=25%  Similarity=0.736  Sum_probs=7.3

Q ss_pred             cccCCCCCCccc
Q psy3507          37 MYHCKTCSTVSH   48 (134)
Q Consensus        37 ~~~C~~C~~~f~   48 (134)
                      .|+|..||..|.
T Consensus         3 ~y~C~~CgyiYd   14 (52)
T d2dsxa1           3 IYVCTVCGYEYD   14 (52)
T ss_dssp             CEEETTTCCEEC
T ss_pred             eEEeCCCCeEEC
Confidence            366666666654

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.76  E-value=0.099  Score=25.09  Aligned_cols=11  Identities=27%  Similarity=0.842  Sum_probs=6.4

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      |+|..||..|.
T Consensus         3 y~C~~CgyiYd   13 (53)
T d1brfa_           3 WVCKICGYIYD   13 (53)
T ss_dssp             EEETTTCCEEE
T ss_pred             eECCCCCcEEC
Confidence            55666665554

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.49  Score=24.63  Aligned_cols=16  Identities=13%  Similarity=0.231  Sum_probs=8.8

Q ss_pred             CCcceeeCCCCCccCC
Q psy3507          51 ISYKYTCYACDYHTLM   66 (134)
Q Consensus        51 ~~~~~~C~~C~~~f~~   66 (134)
                      ++..|+|.+|++.|-+
T Consensus        26 ~~~l~pCRvCtRv~H~   41 (89)
T d1wila_          26 AESLFPCRVCTRVFHD   41 (89)
T ss_dssp             SSCCSSCSSSSSCCCH
T ss_pred             ccceecceeecchhhH
Confidence            3344566666666543

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.46  E-value=0.19  Score=23.22  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=14.1

Q ss_pred             cccCCCCCCcccCCCCcceeeCCCCCc
Q psy3507          37 MYHCKTCSTVSHPNISYKYTCYACDYH   63 (134)
Q Consensus        37 ~~~C~~C~~~f~~~~~~~~~C~~C~~~   63 (134)
                      .|.|.+||..+.-....+..|..||..
T Consensus         4 ~YiCgeCg~~~~l~~~d~irCreCG~R   30 (46)
T d1twfl_           4 KYICAECSSKLSLSRTDAVRCKDCGHR   30 (46)
T ss_dssp             CEECSSSCCEECCCTTSTTCCSSSCCC
T ss_pred             EEEcccCCCceEeCCCCcEEeccCCcE
Confidence            355555555555444445555555543

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.13  Score=20.72  Aligned_cols=16  Identities=19%  Similarity=0.351  Sum_probs=10.1

Q ss_pred             cChhhhcCHHHHHHHH
Q psy3507         115 QCRDTFSSLYLFRNRL  130 (134)
Q Consensus       115 ~C~~~F~~~~~l~~H~  130 (134)
                      -||+.|+++.-|..|.
T Consensus         7 gc~kifsnrqylnhh~   22 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHK   22 (30)
T ss_dssp             TTCCEESSHHHHHHHH
T ss_pred             CchhhhccHHHHHhHH
Confidence            3666666666666664

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.91  E-value=0.16  Score=22.58  Aligned_cols=27  Identities=4%  Similarity=-0.216  Sum_probs=12.9

Q ss_pred             ccCCCCCCccc---CCCCcceeeCCCCCcc
Q psy3507          38 YHCKTCSTVSH---PNISYKYTCYACDYHT   64 (134)
Q Consensus        38 ~~C~~C~~~f~---~~~~~~~~C~~C~~~f   64 (134)
                      ..|+.||+.|.   ......-.|+.|+..+
T Consensus         3 r~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L   32 (38)
T d1akya2           3 LIHPASGRSYHKIFNPPKEDMKDDVTGEAL   32 (38)
T ss_dssp             EECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             cCCcCccchhhhhccCcCcCCccCCCCCEe
Confidence            34666666655   2222234555555443

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.85  E-value=0.15  Score=22.22  Aligned_cols=11  Identities=27%  Similarity=0.827  Sum_probs=5.8

Q ss_pred             ccCCCCCCccc
Q psy3507          38 YHCKTCSTVSH   48 (134)
Q Consensus        38 ~~C~~C~~~f~   48 (134)
                      +.|+.||..|.
T Consensus         3 r~C~~CG~~Yh   13 (35)
T d1zina2           3 RICRNCGATYH   13 (35)
T ss_dssp             EEETTTCCEEE
T ss_pred             cCCcCcCchhc
Confidence            34555555554

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=86.48  E-value=0.22  Score=25.27  Aligned_cols=13  Identities=23%  Similarity=0.700  Sum_probs=8.3

Q ss_pred             ccccCCCCCCccc
Q psy3507          36 LMYHCKTCSTVSH   48 (134)
Q Consensus        36 ~~~~C~~C~~~f~   48 (134)
                      ..|+|..||..|.
T Consensus         6 ~ky~C~~CgyiYD   18 (70)
T d1dx8a_           6 GKYECEACGYIYE   18 (70)
T ss_dssp             SCEEETTTCCEEC
T ss_pred             CeEEcCCCCeEEC
Confidence            3467777776665

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=85.61  E-value=0.18  Score=21.89  Aligned_cols=10  Identities=50%  Similarity=0.999  Sum_probs=5.2

Q ss_pred             cCCCCCCccc
Q psy3507          39 HCKTCSTVSH   48 (134)
Q Consensus        39 ~C~~C~~~f~   48 (134)
                      .|+.||..|.
T Consensus         4 ~C~~CG~~Yh   13 (35)
T d1s3ga2           4 ICKVCGTSYH   13 (35)
T ss_dssp             EETTTCCEEE
T ss_pred             CCcCcCchhc
Confidence            4555555554

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.31  E-value=0.29  Score=21.06  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=14.6

Q ss_pred             ecCcChhhhcCHHHHHHHHH
Q psy3507         112 ICQQCRDTFSSLYLFRNRLQ  131 (134)
Q Consensus       112 ~C~~C~~~F~~~~~l~~H~~  131 (134)
                      -|..|+-.|.+...+..|.+
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHH
T ss_pred             HHhhCCceehhHHHHHHHHH
Confidence            47777777777777777764

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.63  E-value=0.2  Score=25.59  Aligned_cols=29  Identities=17%  Similarity=0.375  Sum_probs=16.4

Q ss_pred             cccCCCCCCc-ccCCCCcceeeCCCCCccC
Q psy3507          37 MYHCKTCSTV-SHPNISYKYTCYACDYHTL   65 (134)
Q Consensus        37 ~~~C~~C~~~-f~~~~~~~~~C~~C~~~f~   65 (134)
                      .|.|+.||+. ......-.+.|..|++.|.
T Consensus        27 ky~Cp~Cgk~~vkR~a~GIW~C~kC~~~~A   56 (73)
T d1jj2y_          27 KHKCPVCGFKKLKRAGTGIWMCGHCGYKIA   56 (73)
T ss_dssp             CBCCSSSCCSCEEEEETTEEEETTTCCEEE
T ss_pred             CccCCCCCCCceEEEEEEEEECCCCCCEEe
Confidence            3677777743 2233333566777776654

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=80.98  E-value=0.35  Score=20.93  Aligned_cols=10  Identities=20%  Similarity=0.142  Sum_probs=5.0

Q ss_pred             cCCCCCCccc
Q psy3507          39 HCKTCSTVSH   48 (134)
Q Consensus        39 ~C~~C~~~f~   48 (134)
                      .|+.||+.|.
T Consensus         4 ~c~~cG~~Yh   13 (35)
T d1e4va2           4 VHAPSGRVYH   13 (35)
T ss_dssp             EETTTTEEEE
T ss_pred             CCcCcCChhh
Confidence            3455555544