Psyllid ID: psy3509

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKLGMQTWP
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRheklgmqtwp
Flexible Loop (DISEMBL)
mkikgkhcqveierrlkefqVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKelrssifsrheklgmqtwp
Low Complexity Region (SEG)
MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKLGMQTWP
Disordered region (IsUnstruct)
*******CQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL********************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKLGMQTWP
Disordered Region (DISPRO)
****GKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKLGMQT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKLGMQTWP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
350546901	261	hypothetical protein GUU_03556 [Mycoplas	0.808	0.486	0.307	6e-12
351713825	343	S-antigen protein, partial [Heterocephal	0.872	0.399	0.283	2e-11
428185097	228	hypothetical protein GUITHDRAFT_100200 [	0.872	0.600	0.445	6e-09
431810374	481	hypothetical protein phi8074-B1_00016 [C	0.904	0.295	0.208	1e-08
420259332	384	hypothetical protein YWA314_11267 [Yersi	0.821	0.335	0.372	2e-08
410658712	71	Formate dehydrogenase O alpha subunit, s	0.420	0.929	0.409	3e-08
395530516	312	PREDICTED: uncharacterized protein LOC10	0.834	0.419	0.277	5e-08
156347492	311	hypothetical protein NEMVEDRAFT_v1g22174	0.834	0.421	0.442	7e-08
256820893	157	hypothetical protein Coch_2067 [Capnocyt	0.789	0.789	0.370	1e-07
428166335	259	hypothetical protein GUITHDRAFT_146615 [	0.828	0.501	0.248	2e-07

>gi|350546901|ref|ZP_08916258.1| hypothetical protein GUU_03556 [Mycoplasma iowae 695] gi|349503509|gb|EGZ31095.1| hypothetical protein GUU_03556 [Mycoplasma iowae 695]

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 87/127 (68%)

Query: 16  LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 75
           +K F+ E++  ++ F+ EI+  ++ F+ EI+  ++EF+ EI+  ++ F+ EI+  ++EF+
Sbjct: 132 MKSFKSEMKSEMESFKSEIKSEMESFKSEIKSEMEEFKSEIKSEMESFKSEIKSDMEEFK 191

Query: 76  VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 135
            EI+  ++ F+ E++  ++EF++EI+  ++EF+ EI+  ++ F+ EI+  + EF+ EI+ 
Sbjct: 192 TEIKSEMESFKSEMKSEMEEFKLEIKSDMEEFKTEIKSDMESFKSEIKSDMVEFKTEIKS 251

Query: 136 RLKELRS 142
            ++E +S
Sbjct: 252 NIEEFKS 258

Source: Mycoplasma iowae 695

Species: Mycoplasma iowae

Genus: Mycoplasma

Family: Mycoplasmataceae

Order: Mycoplasmatales

Class: Mollicutes

Phylum: Tenericutes

Superkingdom: Bacteria

>gi|351713825|gb|EHB16744.1| S-antigen protein, partial [Heterocephalus glaber]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 1   MKIKGKHCQVEIE--RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 58
           MK +G   + +IE   R  E  +E++ R  E  +E++ R  E  +E++ R  E  +E++ 
Sbjct: 8   MKTRG--SEGDIEMKTRGSEGDIEMKTRGSEGDIEMKTRGSEGDIEMKTRGSEGDIEMKT 65

Query: 59  RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 118
           R  E  +E++ R  E  +E++ R  E  +E++ R  E  +E++ R  E  +E++ R  E 
Sbjct: 66  RGSEGDIEMKTRGSEGDIEMKTRGSEGDIEMKTRGSEGDIEMKTRGSEGDIEMKTRGSEG 125

Query: 119 QVEIERRLKEFQVEIERRLKE 139
            +E++ R  E  +E++ R  E
Sbjct: 126 DIEMKSRGSEGDIEMKTRGSE 146

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|428185097|gb|EKX53950.1| hypothetical protein GUITHDRAFT_100200 [Guillardia theta CCMP2712]

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 75/137 (54%)

Query: 4   KGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 63
           + K   V+ ERR K   V+ ERR K   V+ ERR K   V+ ERR K   V+ ERR K  
Sbjct: 50  RDKTVLVQDERRDKTVLVQDERRDKTVLVQDERRYKTVLVQDERRDKTVLVQDERRYKTV 109

Query: 64  QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 123
            V+ ERR K   V+ ERR K   V+ ERR K   V+ ERR K   V+ ERR K   V+ E
Sbjct: 110 LVQDERRYKTVLVQDERRDKTVLVQDERRYKTVLVQDERRYKTVLVQDERRYKTVLVQDE 169

Query: 124 RRLKEFQVEIERRLKEL 140
           RR K   V+ ERR K +
Sbjct: 170 RRDKTVLVQDERRYKTV 186

Source: Guillardia theta CCMP2712

Species: Guillardia theta

Genus: Guillardia

Family: Geminigeraceae

Order: Pyrenomonadales

Class: Cryptophyta

Superkingdom: Eukaryota

>gi|431810374|ref|YP_007237256.1| hypothetical protein phi8074-B1_00016 [Clostridium phage phi8074-B1] gi|378835204|gb|AFC61948.1| hypothetical protein phi8074-B1_00016 [Clostridium phage phi8074-B1]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 11  EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
           E+   L +++   E   +  +VE++ ++  F   I  R   +Q E+ ++  EF   + + 
Sbjct: 70  EVATTLADYKSTYESDFRNHEVEVQNQIDAFTTNINDRFTAYQSEMNKQYSEFSTGVNQT 129

Query: 71  LKE-------FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 123
           LKE       F+  I  R+ +F+ ++  R++ F   +   +  F   I + + +F  E+ 
Sbjct: 130 LKEYKDQNDLFEKTITERVTKFETDVNARIEAFTTSLTEEMTTFTASITKTVTDFTTEVN 189

Query: 124 RRLKEFQVEIERRLKELRSSIFSRHEKLG 152
            +L+ ++ EI     E+ + +    ++LG
Sbjct: 190 GKLEGYEKEIGDHKAEITNILAQYQQQLG 218

Source: Clostridium phage phi8074-B1

Species: Clostridium phage phi8074-B1

Family: Siphoviridae

Order: Caudovirales

Superkingdom: Viruses

>gi|420259332|ref|ZP_14762043.1| hypothetical protein YWA314_11267 [Yersinia enterocolitica subsp. enterocolitica WA-314] gi|404513266|gb|EKA27090.1| hypothetical protein YWA314_11267 [Yersinia enterocolitica subsp. enterocolitica WA-314]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 60/129 (46%)

Query: 11  EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
           E +RR  E   E +RR  E   E +RR  E   E +RR  E   E +RR  E   E +RR
Sbjct: 17  EGQRRCGEEHHEGQRRCGEEHHEGQRRCGEEHHEGQRRCGEEHHEGQRRCGEEHHEGQRR 76

Query: 71  LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
             E   E +RR  E   E +RR  E   E +RR  E   E +RR  E   E +RR  E  
Sbjct: 77  CGEEHHEGQRRCGEEHHEGQRRCGEEHHEGQRRCGEEHHEGQRRCGEEHHEGQRRCGEEH 136

Query: 131 VEIERRLKE 139
            E +RR  E
Sbjct: 137 HEGQRRCGE 145

Source: Yersinia enterocolitica subsp. enterocolitica WA-314

Species: Yersinia enterocolitica

Genus: Yersinia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|410658712|ref|YP_006911083.1| Formate dehydrogenase O alpha subunit, selenocysteine-containing [Dehalobacter sp. DCA] gi|410661700|ref|YP_006914071.1| Formate dehydrogenase O alpha subunit, selenocysteine-containing [Dehalobacter sp. CF] gi|409021067|gb|AFV03098.1| Formate dehydrogenase O alpha subunit, selenocysteine-containing [Dehalobacter sp. DCA] gi|409024056|gb|AFV06086.1| Formate dehydrogenase O alpha subunit, selenocysteine-containing [Dehalobacter sp. CF]

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 46/66 (69%)

Query: 10 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 69
          +  +RR K+ +V  +RR+K+ QV  +RR+K+ QV  +RR+K+ +V  +RR+K+ QV   R
Sbjct: 1  MNSDRRAKDRRVNSDRRVKDHQVNSDRRVKDHQVNSDRRVKDRRVNSDRRVKDHQVNSGR 60

Query: 70 RLKEFQ 75
          R+K+ Q
Sbjct: 61 RVKDHQ 66

Source: Dehalobacter sp. DCA

Species: Dehalobacter sp. DCA

Genus: Dehalobacter

Family: Peptococcaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|395530516|ref|XP_003767339.1| PREDICTED: uncharacterized protein LOC100920122 [Sarcophilus harrisii]

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 16  LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 75
           + E    +ERR+ E +  +E R+ E    +E R+ E    +  R  E +  +E R+ E  
Sbjct: 1   MSELGDTLERRISELKGTLEHRMSELVGTLEHRMSELGGTLGHRTSELEGTVEHRISELG 60

Query: 76  VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 135
             ++RR+      + RRL         R  E    +E R  E  V ++ R  E    +E 
Sbjct: 61  WALKRRVSGLGGSLGRRLS------LHRTSELVGNLEYRTSELGVTLQYRDVELGRTLEC 114

Query: 136 RLKELRSSIFSRHEKLG 152
           RL ELR ++  R  +LG
Sbjct: 115 RLSELRGTVGHRVSELG 131

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156347492|ref|XP_001621648.1| hypothetical protein NEMVEDRAFT_v1g221748 [Nematostella vectensis] gi|156207802|gb|EDO29548.1| predicted protein [Nematostella vectensis]

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 61/131 (46%)

Query: 9   QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
             E+ RRL E   E  RRL E   E  RRL E   E  RRL E   E  RRL     E  
Sbjct: 69  GGELYRRLSERGGERYRRLSERGGEWYRRLSEGGGEWYRRLSERGGERYRRLSGRGGERY 128

Query: 69  RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 128
           RRL E   E  RRL E   E  RRL E   E  RRL E   E  RRL E   E  R+L E
Sbjct: 129 RRLSERGGERYRRLSERGGEWYRRLSERGGERYRRLSERGGERYRRLSERGGEWYRQLSE 188

Query: 129 FQVEIERRLKE 139
              E+ RRL E
Sbjct: 189 RGGELYRRLSE 199

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|256820893|ref|YP_003142172.1| hypothetical protein Coch_2067 [Capnocytophaga ochracea DSM 7271] gi|256582476|gb|ACU93611.1| hypothetical protein Coch_2067 [Capnocytophaga ochracea DSM 7271]

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 68/124 (54%)

Query: 14  RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 73
           RR K+ Q   +RR K+ Q   +RR K+ Q   +RR K+ Q   +RR K+ Q   +RR K+
Sbjct: 28  RRHKDEQKTNKRRRKDEQKTNKRRTKDEQKTNKRRTKDEQKTNKRRTKDEQKTNKRRTKD 87

Query: 74  FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI 133
            Q   +RR K+ Q   +RR K+ Q   +RR K+ Q   +RR K+ Q   +RR K+ Q   
Sbjct: 88  EQKTNKRRTKDEQKTNKRRTKDEQKTNKRRTKDEQKTNKRRTKDEQKTNKRRTKDEQKTN 147

Query: 134 ERRL 137
           +RR 
Sbjct: 148 KRRC 151

Source: Capnocytophaga ochracea DSM 7271

Species: Capnocytophaga ochracea

Genus: Capnocytophaga

Family: Flavobacteriaceae

Order: Flavobacteriales

Class: Flavobacteriia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|428166335|gb|EKX35313.1| hypothetical protein GUITHDRAFT_146615 [Guillardia theta CCMP2712]

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 81/137 (59%), Gaps = 7/137 (5%)

Query: 12  IERRLKEFQVEIERRLKEFQVEIER---RLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
           ++  L E + +++  L E + E+++    L E + ++E  L E + +++ RL E + +++
Sbjct: 42  MDTGLSELESKMDTGLSEVKNEVQQLKGSLHELESKMETGLSELESKMDTRLSEVESKMD 101

Query: 69  RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 128
            RL E + +++ RL E + +++ RL E + +++ RL E + +++ RL E + +++ RL E
Sbjct: 102 TRLSEVESKMDTRLSEVESKMDTRLSEVESKMDTRLSEVESKMDTRLSEVESKMDTRLSE 161

Query: 129 FQVEIERRLKELRSSIF 145
            + E+    ++L+ S+ 
Sbjct: 162 VKNEV----QQLKGSLH 174

Source: Guillardia theta CCMP2712

Species: Guillardia theta

Genus: Guillardia

Family: Geminigeraceae

Order: Pyrenomonadales

Class: Cryptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2115245	1422	AT4G36520 [Arabidopsis thalian	0.885	0.097	0.465	4.8e-15
UNIPROTKB|Q8IIG7	1070	PF11_0207 "Uncharacterized pro	0.898	0.131	0.322	6.3e-14
UNIPROTKB|F1LWY3	315	F1LWY3 "Uncharacterized protei	0.802	0.4	0.182	3.9e-12
ZFIN|ZDB-GENE-050208-317	1422	tnks1bp1 "tankyrase 1 binding	0.815	0.090	0.424	1.2e-11
ZFIN|ZDB-GENE-030616-583	1376	acin1a "apoptotic chromatin co	0.796	0.090	0.435	1.9e-11
DICTYBASE|DDB_G0293544	2110	cepK "centrosomal protein 248	0.859	0.063	0.265	4e-11
FB|FBgn0051712	290	CG31712 [Drosophila melanogast	0.847	0.458	0.303	1.4e-10
ZFIN|ZDB-GENE-091204-448	1823	si:ch73-138n13.1 "si:ch73-138n	0.878	0.075	0.407	1.5e-10
UNIPROTKB|F1LWY2	355	F1LWY2 "Uncharacterized protei	0.802	0.354	0.158	2e-10
DICTYBASE|DDB_G0270444	1360	DDB_G0270444 "protein kinase,	0.885	0.102	0.331	2.2e-10

TAIR|locus:2115245 AT4G36520 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 75/161 (46%), Positives = 98/161 (60%)

Query:     2 KIKGKHCQVEIERRLKEFQ--VEIERRLKEFQ--VEIERRLKEFQVEIERRLKE-FQVEI 56
             ++K    Q E ER++KE +   E ERR  E +   E ER++KE Q E+E +LKE F+ E 
Sbjct:   663 RLKAALEQEEKERKIKEAREKAENERRAVEAREKAEQERKMKE-QQELELQLKEAFEKEE 721

Query:    57 E-RRLKE---FQVEIERRLKEFQV--EIERRLKEFQ--VEIERRLKEF--QVEIERRLKE 106
             E RR++E    + E ERR+KE +   E ERR+KE +   E+E+RLK    Q E ER++KE
Sbjct:   722 ENRRMREAFALEQEKERRIKEAREKEENERRIKEAREKAELEQRLKATLEQEEKERQIKE 781

Query:   107 FQV--EIERRLKEF--QVEIERRLKEF--QVEIERRLKELR 141
              Q   E ERR KE   Q E ER+LKE   Q E ERRLKE R
Sbjct:   782 RQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETR 822

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 193 (73.0 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 48/149 (32%), Positives = 86/149 (57%)

Query:    11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER---RLKEFQVEIERRLKE----F 63
             EI+  +KE + EI+  +KE   E++  +KE + EI+     +KE + EI+  +KE     
Sbjct:   521 EIKEEIKEVKEEIKEEIKEEIKEVKEEIKEVKEEIKEVKEEIKEVKEEIKEEIKEVKEEI 580

Query:    64 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 123
             + EI+  +KE + EI+  +KE   E++  +KE + EI+  +KE   E++  +KE + EI+
Sbjct:   581 KEEIKEEIKEVKEEIKEEVKEEIKEVKEEIKEVKEEIKEEVKEEIKEVKEEIKEVKEEIK 640

Query:   124 RRLKEFQVEIERRLKE-LRSSIFSRHEKL 151
               +KE + EI+  +KE ++  I    E+L
Sbjct:   641 EEIKEVKEEIKEEVKEEIKEEIKEIKEEL 669

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=NAS

GO:0016020 "membrane" evidence=NAS

UNIPROTKB|F1LWY3 F1LWY3 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 23/126 (18%), Positives = 70/126 (55%)

Query:    11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
             E++R+   +  E++R+   +  E++R+   +  E++R+   +  E++ +   +  E++R+
Sbjct:   155 EVQRQFTTYSDEVQRQFTTYSDEVQRQFTRYSDEVQRQFTRYSDEVQCQFTRYSDEVQRQ 214

Query:    71 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
                +  E++R+   +  E++R+   +  E++R+   +  E++R+   +  E++R+   + 
Sbjct:   215 FPRYSDEVQRQFPRYSDEVQRQFTMYSDEVQRQFTMYSDEVQRQFPRYSDEVQRQFTRYS 274

Query:   131 VEIERR 136
              E++R+
Sbjct:   275 DEVQRQ 280

GO:0005576 "extracellular region" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0042157 "lipoprotein metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 59/139 (42%), Positives = 94/139 (67%)

Query:     9 QVEIERRLKEFQVEIERRLKEFQVEIERR-LKEFQVEIER-RLKEFQVEIERRLKEFQVE 66
             Q E ERR KE + E+ER  KE ++E ERR ++E + ++E  RL++ Q E+ER  KE ++E
Sbjct:   526 QKEEERRRKE-EEEMERIRKEKEIEEERRRIQELERQMEEERLRKEQ-EMERIRKEKEME 583

Query:    67 IERR-LKEFQVEIER-RLKEFQVEIERRLKEFQVEIERR-LKEFQVEIER-RLKEFQVEI 122
              ERR ++E + ++E  RL++ Q E+ER  KE ++E ERR ++E + + E  RL++ + EI
Sbjct:   584 EERRRIQELERQMEEERLRKEQ-EMERIRKEKEMEEERRRIQELERQKEEDRLRK-EREI 641

Query:   123 ERRLKEFQVEIERR-LKEL 140
              R  KE ++E ERR ++EL
Sbjct:   642 ARLKKEKEMEEERRRIQEL 660

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 57/131 (43%), Positives = 87/131 (66%)

Query:     9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
             ++E ER+ KE +VE ER+ KE  +E ER LK+ ++E ER+ +E  +E ER  +E ++E E
Sbjct:   473 RLERERQEKE-RVEKERQEKEQALERER-LKQERLEKERQEREEALERERLERE-RLEKE 529

Query:    69 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 128
             R+ +E  +E ER  +E ++E ERR KE  +E ER  KE ++E E++ KE  +E ER  KE
Sbjct:   530 RQEREEALEKERLERE-RLEKERREKEAALERERLEKE-RLEKEKKEKEAALERERLEKE 587

Query:   129 FQVEIERRLKE 139
              ++E E+R KE
Sbjct:   588 -RIEKEKREKE 597

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0293544 cepK "centrosomal protein 248 kDa" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 39/147 (26%), Positives = 91/147 (61%)

Query:    17 KEFQVEIERRLKEFQVEIERRLKEFQVEIE-RRL---KEFQVEIERRLKEFQVEIERRLK 72
             ++F+++ +++ +EF++E+ER+ ++F+ E+E ++L   KEF++E E+   + +  +    K
Sbjct:  1296 QDFKLQFDQQRQEFEIELERQRQDFEKELENQKLIIEKEFEIEFEKERNQLRSNLSNEKK 1355

Query:    73 EFQ-VEIERRLK---EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 128
             + + +E E +LK   +F+ EIE+ ++++  +I+    ++Q+E E+   +  +E +++  E
Sbjct:  1356 DLESLEKELKLKFEKQFEKEIEKEIEKYNQQIKT---QYQMEFEQHQLQLSIEQQQQYSE 1412

Query:   129 FQVEIERRLKELRSSIFSRHEKLGMQT 155
              Q + E+ L+  R  I S  E+L  Q+
Sbjct:  1413 QQQQFEQLLETYRQEI-SNLEQLNSQS 1438

GO:0005813 "centrosome" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0051712 CG31712 [Drosophila melanogaster (taxid:7227)]

 Score = 152 (58.6 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 44/145 (30%), Positives = 82/145 (56%)

Query:     9 QVEIERRLKEFQVEI--ERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVE 66
             ++E +RR KE + +   E   K  ++ +++R++E   E+E+R  E + E+ RR++  + E
Sbjct:   127 EMERQRRAKELEQKTIEEEAAKRIEMLVKKRVEE---ELEKRRDEIEQEVNRRVETAKAE 183

Query:    67 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI-ERR 125
             +ER   E  +E+ERR ++ + E ERR +E + +    L+E   E  R+++E Q ++ E R
Sbjct:   184 MER---EMMLELERRREQIREE-ERRREEDEKQKREELEEILAENNRKIEEAQRKLAEER 239

Query:   126 LKEFQVEIERRLKELRSSIFSRHEK 150
             L    +E +R + E R  +    EK
Sbjct:   240 LAI--IEEQRLMDEERQRMRKEQEK 262

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-091204-448 si:ch73-138n13.1 "si:ch73-138n13.1" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 64/157 (40%), Positives = 98/157 (62%)

Query:     6 KHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 65
             K  + EI++  KE Q E+ER+ +E + E +R++ E Q EIER+ K  Q+E ER +K  + 
Sbjct:   881 KRREAEIQKE-KERQKELERQ-REQERERQRQI-ERQREIERQ-KLKQIEYER-MKAAER 935

Query:    66 EIERRLKEF----QVEIERRLKEFQVEIER-RLKEF--QVEIERRLKEFQVEIERRLKEF 118
             E+E++ +EF    Q E ER  KE  +E ER RL+EF  Q EIE+  +E Q+E+ER+ +E 
Sbjct:   936 ELEQQ-REFERQRQKEFERE-KERMLEQERLRLREFEKQKEIEKE-RERQLELERQ-REI 991

Query:   119 QVEIERRLKEFQVEIERRLKEL-RSSIFSRHEKLGMQ 154
             + + +R L++ Q EIER+ KE+ R     R  +L  Q
Sbjct:   992 ERQKQRELEK-QREIERQ-KEIERQRELQRQRELEKQ 1026

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1LWY2 F1LWY2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 20/126 (15%), Positives = 67/126 (53%)

Query:    11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
             E++R+  ++  E++ +   +  E++ +   +  E++R+   +  E++R    +  E++R+
Sbjct:   125 EVQRQFTKYSDEVQHQFTTYSDEVQHQFTTYSDEVQRQFPRYSDEVQRHFTRYSDEVQRQ 184

Query:    71 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
                +  ++ R+   +  E++R+   +  E++R+   +  E++ +   +  E++R+   + 
Sbjct:   185 FTTYSDDVLRQFTRYSDEVQRQFTRYSDEVQRQFTRYSDEVQHQFTTYSDEVQRQFTTYS 244

Query:   131 VEIERR 136
              E++R+
Sbjct:   245 DEVQRQ 250

GO:0005576 "extracellular region" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0042157 "lipoprotein metabolic process" evidence=IEA

DICTYBASE|DDB_G0270444 DDB_G0270444 "protein kinase, CMGC group" [Dictyostelium discoideum (taxid:44689)]

 Score = 161 (61.7 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 51/154 (33%), Positives = 84/154 (54%)

Query:     2 KIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKE-FQVEIERRLKEFQVEIERRL 60
             KIK    Q EI+ +  +   EI+  +KE   EIE  +KE  + EI+   KE Q E +  +
Sbjct:  1015 KIKENEIQKEIDFKENQINEEIKEDVKE---EIEEDIKEEIKEEIKEESKEVQEEAKEEI 1071

Query:    61 KE-FQVEIERRLKEFQVEIERRLKEFQV--EIERRLKE-FQVEIERRLKEFQVEIERRLK 116
             KE  Q+E +   +E + E++  +KE ++  EI+  +KE  Q EI+   K+   EI+  +K
Sbjct:  1072 KEEIQIETQEVKEEIKEEVQVEIKEEKIKEEIKEEIKEETQEEIKEENKD---EIQETIK 1128

Query:   117 E-FQVEIERRLKEFQVEIERRLKELRSSIFSRHE 149
             E  QVEI+  +KE   E +  +KE+ + +  + E
Sbjct:  1129 EEVQVEIKEEIKE---ETQEEIKEILNEVQVKEE 1159

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF01442	202	Apolipoprotein: Apolipoprotein A1/A4/E domain; Int	98.38
PF01442	202	Apolipoprotein: Apolipoprotein A1/A4/E domain; Int	98.25
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	93.32
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	90.54
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	87.88
PF08776	40	VASP_tetra: VASP tetramerisation domain; InterPro:	81.08

>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene

Probab=98.38  E-value=0.00027  Score=49.78  Aligned_cols=43  Identities=26%  Similarity=0.494  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509          17 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR   59 (157)
Q Consensus        17 ksFk~Emk~emesFk~Ei~~emesFk~Ei~~emeeFk~EI~~e   59 (157)
                      ..+...|...+..+...+......+...|....+.+...+...
T Consensus        37 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~   79 (202)
T PF01442_consen   37 EALSERLESELEELSDRLEERLDEVKERIEERIEELKNSLDSS   79 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444443333333333333333

This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....

>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene

Probab=98.25  E-value=0.00058  Score=48.08  Aligned_cols=132  Identities=29%  Similarity=0.547  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy3509          12 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF------   85 (157)
Q Consensus        12 lk~emksFk~Emk~emesFk~Ei~~emesFk~Ei~~emeeFk~EI~~emesFk~EI~~~~kEf~veI~~~~~~F------   85 (157)
                      |...+..+...+......+...|....+.+...+......+...+......+..-+.....++...+...+..+      
T Consensus        43 l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  122 (202)
T PF01442_consen   43 LESELEELSDRLEERLDEVKERIEERIEELKNSLDSSTSELDESLSERAEELKERLEARAEELESRLEEEVDELEESLES  122 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            44555555555555555555555555555554444444444444444444444433333333333333333333      


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3509          86 -----QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSS  143 (157)
Q Consensus        86 -----~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S~  143 (157)
                           ...+...+..+.-.+...+.++...|...+..+..-+......++..+...+.+|++.
T Consensus       123 ~~~~~~~~i~~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~~l~~~~~~l~~~l~~~~~~l~~~  185 (202)
T PF01442_consen  123 RSEELKEKIEERLEELSEELTERAEELEAKISERLEELRESLEEKAEELKETLDQRIEELESS  185 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3333344444444444444444444444444444444444444444444444444443

This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=93.32  E-value=3.2  Score=40.45  Aligned_cols=36  Identities=14%  Similarity=0.452  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhh
Q psy3509         112 ERRLKEFQVEIERRLKEF--QVEIERRLKELRSSIFSR  147 (157)
Q Consensus       112 ~~~~~~F~~EI~~~~~EF--~~EI~~~i~E~~S~~~~~  147 (157)
                      +...+....+|+..+.+-  -.+++...++|+..|.+-
T Consensus       694 k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~  731 (762)
T PLN03229        694 KEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAA  731 (762)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHh
Confidence            456677777777777664  356777777777777653

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=90.54  E-value=6.6  Score=30.26  Aligned_cols=18  Identities=11%  Similarity=0.503  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy3509          61 KEFQVEIERRLKEFQVEI   78 (157)
Q Consensus        61 esFk~EI~~~~kEf~veI   78 (157)
                      +..+++++.++..++-++
T Consensus        90 e~l~~~L~~ei~~l~a~~  107 (177)
T PF07798_consen   90 EKLRQELREEINKLRAEV  107 (177)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444333333

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=87.88  E-value=12  Score=29.86  Aligned_cols=84  Identities=23%  Similarity=0.466  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509          12 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF---QVEIERRLKEFQVEIERRLKEFQVE   88 (157)
Q Consensus        12 lk~emksFk~Emk~emesFk~Ei~~emesFk~Ei~~emeeFk~EI~~emesF---k~EI~~~~kEf~veI~~~~~~F~~E   88 (157)
                      |...+..|.+.|+.+-..=+..=..++..++.-|.+==+....|++++.+++   +.-+...+..++..+..........
T Consensus        10 i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~   89 (247)
T PF06705_consen   10 INERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQ   89 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777776654443333344444444444443344455555555443   3455555555555555555444444


Q ss_pred             HHHHHHH
Q psy3509          89 IERRLKE   95 (157)
Q Consensus        89 ~~~~~~E   95 (157)
                      +...+..
T Consensus        90 ~~~~l~~   96 (247)
T PF06705_consen   90 LQSRLDS   96 (247)
T ss_pred             HHHHHHH
Confidence            4444443

>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein

Probab=81.08  E-value=10  Score=25.02  Aligned_cols=11  Identities=27%  Similarity=0.531  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q psy3509          46 ERRLKEFQVEI   56 (157)
Q Consensus        46 ~~emeeFk~EI   56 (157)
                      ++++.-.|.||
T Consensus        17 rkEl~K~K~EI   27 (40)
T PF08776_consen   17 RKELQKVKEEI   27 (40)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333344433

This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	7e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-04

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 16/152 (10%), Positives = 50/152 (32%), Gaps = 3/152 (1%)

Query: 1   MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 60
            +++  +  ++ + RL + +  +         EI+      +   +   +  ++E++R+ 
Sbjct: 816 SELEAIYNSLQTKLRLIKREPFVAPAGLTPN-EIDSTWSALEKAEQEHAEALRIELKRQK 874

Query: 61  KEFQV--EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 118
           K   +  +  R LK+ +     +                    + L+ F  E +    + 
Sbjct: 875 KIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 934

Query: 119 QVEIERRLKEFQVEIERRLKELRSSIFSRHEK 150
             ++   L +        + EL     +   +
Sbjct: 935 NSDLLSILAQLTELNYNGVPELTERKDTFFAQ 966

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 5/147 (3%)

Query: 10  VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 69
            E+E      Q ++    +E              EI+      +   +   +  ++E++R
Sbjct: 816 SELEAIYNSLQTKLRLIKRE---PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 872

Query: 70  RLKEFQV--EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 127
           + K   +  +  R LK+ +     +                    + L+ F  E +    
Sbjct: 873 QKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 932

Query: 128 EFQVEIERRLKELRSSIFSRHEKLGMQ 154
           +   ++   L +L    ++   +L  +
Sbjct: 933 QSNSDLLSILAQLTELNYNGVPELTER 959

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 18/154 (11%), Positives = 59/154 (38%), Gaps = 1/154 (0%)

Query: 1   MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 60
           M+      Q  +   L   + ++  R  +  +  +            R  +  V ++   
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897

Query: 61  KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120
           +    + E +  + +     R K+  + +E ++ + Q +I+ + KE++  +  ++   ++
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK-SLLEKMNNLEI 956

Query: 121 EIERRLKEFQVEIERRLKELRSSIFSRHEKLGMQ 154
                 ++ + ++ER       +  + +  L +Q
Sbjct: 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 16/134 (11%), Positives = 51/134 (38%), Gaps = 1/134 (0%)

Query: 11  EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
            +       Q  +   L   + ++  R  +  +  +            R  +  V ++  
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896

Query: 71  LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
            +    + E +  + +     R K+  + +E ++ + Q +I+ + KE++  +  ++   +
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK-SLLEKMNNLE 955

Query: 131 VEIERRLKELRSSI 144
           +      ++LRS +
Sbjct: 956 ITYSTETEKLRSDV 969

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 19/137 (13%), Positives = 58/137 (42%), Gaps = 1/137 (0%)

Query: 15   RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 74
            R K+  + +E ++ + Q +I+ + KE++  +  ++   ++      ++ + ++ER     
Sbjct: 918  RYKKLHIGLENKIMQLQRKIDEQNKEYK-SLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 75   QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 134
            +       +   ++ E      ++   +  K+   E   + K    ++   LKE    ++
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036

Query: 135  RRLKELRSSIFSRHEKL 151
               +EL   I  + +++
Sbjct: 1037 TEKEELNRRIHDQAKEI 1053

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	97.73
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	97.69
1nfn_A	191	Apolipoprotein E3; lipid transport, heparin-bindin	97.07
3r2p_A	185	Apolipoprotein A-I; amphipathic alpha-helix, major	96.93
2a01_A	243	Apolipoprotein A-I; four-helix bundle, lipid trans	96.86
2lem_A	216	Apolipoprotein A-I; lipid transport; NMR {Mus musc	96.06
2l7b_A	307	Apolipoprotein E, APO-E; lipid transport, atherosc	95.95
3r2p_A	185	Apolipoprotein A-I; amphipathic alpha-helix, major	95.94
1nfn_A	191	Apolipoprotein E3; lipid transport, heparin-bindin	95.76
2l7b_A	307	Apolipoprotein E, APO-E; lipid transport, atherosc	95.42
2lem_A	216	Apolipoprotein A-I; lipid transport; NMR {Mus musc	94.95
1gs9_A	165	Apolipoprotein E, APOE4; lipid transport, heparin-	91.88
1gs9_A	165	Apolipoprotein E, APOE4; lipid transport, heparin-	87.04
1use_A	45	VAsp, vasodilator-stimulated phosphoprotein; signa	81.38

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=97.73  E-value=0.012  Score=47.59  Aligned_cols=38  Identities=26%  Similarity=0.559  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509         105 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS  142 (157)
Q Consensus       105 ~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S  142 (157)
                      ++++.-|..++++++.-+.--..+++..|..++.+||.
T Consensus       102 eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~  139 (273)
T 3s84_A          102 DELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR  139 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333444444444433

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=97.69  E-value=0.012  Score=47.63  Aligned_cols=7  Identities=43%  Similarity=0.548  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q psy3509         135 RRLKELR  141 (157)
Q Consensus       135 ~~i~E~~  141 (157)
                      .++++||
T Consensus       176 ~~~eeLr  182 (273)
T 3s84_A          176 ASAEELR  182 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A

Probab=97.07  E-value=0.0043  Score=47.75  Aligned_cols=106  Identities=13%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509          41 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV  120 (157)
Q Consensus        41 Fk~Ei~~emeeFk~EI~~emesFk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~  120 (157)
                      ++.-|.--..+|..-+...++.+...+..+|.+++..+.--+.+++.-+...+++++-.+.--.++.+.-+..++++|+.
T Consensus        78 l~~qL~P~~~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~  157 (191)
T 1nfn_A           78 LEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQK  157 (191)
T ss_dssp             HTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            33333333344555566677778888888888888888888888887777777888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3509         121 EIERRLKEFQVEIERRLKELRSSIFS  146 (157)
Q Consensus       121 EI~~~~~EF~~EI~~~i~E~~S~~~~  146 (157)
                      =+.--..+++..+..+++++++++-.
T Consensus       158 ~l~P~~eelk~~l~~~veel~~~L~P  183 (191)
T 1nfn_A          158 RLAVYQAGAREGAERGLSAIRERLGP  183 (191)
T ss_dssp             HHHHHTC-------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            88888888899999999999887643

>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A

Probab=96.93  E-value=0.062  Score=40.23  Aligned_cols=36  Identities=14%  Similarity=0.310  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509         106 EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELR  141 (157)
Q Consensus       106 EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~  141 (157)
                      ++++-+...+++.+.=..--..+++.-|..++++||
T Consensus       148 ~lr~~l~~~~e~lk~~l~Py~ee~k~kl~~~leeLk  183 (185)
T 3r2p_A          148 EMRDRARAHVDALRTHLAPYSDELRQRLAARLEALK  183 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            333334444444443333334444444444554444

>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*

Probab=96.86  E-value=0.0056  Score=47.95  Aligned_cols=13  Identities=15%  Similarity=0.222  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHhh
Q psy3509         132 EIERRLKELRSSI  144 (157)
Q Consensus       132 EI~~~i~E~~S~~  144 (157)
                      .+...+.+||.++
T Consensus       195 kl~~~~e~lr~~l  207 (243)
T 2a01_A          195 KATEHLSTLSEKA  207 (243)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            3334444444444

>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}

Probab=96.06  E-value=0.006  Score=47.04  Aligned_cols=38  Identities=18%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509         105 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS  142 (157)
Q Consensus       105 ~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S  142 (157)
                      +++++-+...+++++.=+.--..+++..|..++++|+.
T Consensus       145 e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~  182 (216)
T 2lem_A          145 EEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAELKS  182 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhC
Confidence            34444455555555554444555555555555555554

>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}

Probab=95.95  E-value=0.055  Score=44.66  Aligned_cols=29  Identities=17%  Similarity=0.370  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3509         116 KEFQVEIERRLKEFQVEIERRLKELRSSI  144 (157)
Q Consensus       116 ~~F~~EI~~~~~EF~~EI~~~i~E~~S~~  144 (157)
                      ++++..++....+++.-|..++++||+.+
T Consensus       245 ee~~~ql~~~aeel~~kl~~~~eeLr~~l  273 (307)
T 2l7b_A          245 AEVRAKLEEQAQQIRLQAEAAQARLKSRF  273 (307)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHh
Confidence            44556666666666666666666666654

>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A

Probab=95.94  E-value=0.34  Score=36.14  Aligned_cols=81  Identities=19%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509          63 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS  142 (157)
Q Consensus        63 Fk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S  142 (157)
                      ++..+..++++++..+..-+.+++.=+...+++++-.+.--..++++-+..++++++.-+..-..++++-+..|++++|+
T Consensus        83 Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~  162 (185)
T 3r2p_A           83 LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT  162 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444333333344444444444333333333333334444444444443


Q ss_pred             h
Q psy3509         143 S  143 (157)
Q Consensus       143 ~  143 (157)
                      +
T Consensus       163 ~  163 (185)
T 3r2p_A          163 H  163 (185)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A

Probab=95.76  E-value=0.062  Score=41.26  Aligned_cols=84  Identities=12%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509          63 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS  142 (157)
Q Consensus        63 Fk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S  142 (157)
                      |..-+..++..++.++...|++.+.-+.--+.+++--+...+++++..+.--.++.+.=+..++.+|+.=+.--.+++++
T Consensus        89 ~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~  168 (191)
T 1nfn_A           89 TRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGARE  168 (191)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             hhhh
Q psy3509         143 SIFS  146 (157)
Q Consensus       143 ~~~~  146 (157)
                      .+..
T Consensus       169 ~l~~  172 (191)
T 1nfn_A          169 GAER  172 (191)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            4443

>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}

Probab=95.42  E-value=0.035  Score=45.80  Aligned_cols=124  Identities=17%  Similarity=0.312  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509          21 VEIERRLKEFQVEIERRLKEFQVEIERRL----KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF   96 (157)
Q Consensus        21 ~Emk~emesFk~Ei~~emesFk~Ei~~em----eeFk~EI~~emesFk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF   96 (157)
                      +++-+++.....++...+.+....++..|    .+|...+-...+.++..|..++.+++..+.--+.+++.=+...|+++
T Consensus        62 s~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eel  141 (307)
T 2l7b_A           62 SQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEEL  141 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555544333333333    34455566666666666667777777766666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3509          97 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSI  144 (157)
Q Consensus        97 ~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S~~  144 (157)
                      +-.+..-..++++-+..++++++.-+..-..+.+.-|..|+++||+++
T Consensus       142 r~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L  189 (307)
T 2l7b_A          142 RVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERL  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            666666666677777777777776666666677777788888888776

>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}

Probab=94.95  E-value=0.1  Score=40.07  Aligned_cols=51  Identities=16%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhh
Q psy3509          94 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV---------EIERRLKELRSSI  144 (157)
Q Consensus        94 ~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~---------EI~~~i~E~~S~~  144 (157)
                      ++++--+...+++++.=+.--.++++..|...+.+++.         -|..++++||.++
T Consensus       145 e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~~p~~~e~~~ki~~~~e~Lr~~l  204 (216)
T 2lem_A          145 EEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAELKSNPTLNEYHSSAKSHLKSLGEKA  204 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSSHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHh
Confidence            34444455555555555555556666666666666655         4555666666655

>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A

Probab=91.88  E-value=0.66  Score=35.13  Aligned_cols=70  Identities=13%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3509          75 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSI  144 (157)
Q Consensus        75 ~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S~~  144 (157)
                      ...+...+..++..+...+++++-.+.--+.+++.=+.-.+++++..+...+.+++.-+..++++|+.++
T Consensus        90 ~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL  159 (165)
T 1gs9_A           90 RARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL  159 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3333444444444444444444444444444555444444555555555555555566666666665544

>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A

Probab=87.04  E-value=1.5  Score=33.14  Aligned_cols=25  Identities=16%  Similarity=0.408  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509         104 LKEFQVEIERRLKEFQVEIERRLKE  128 (157)
Q Consensus       104 ~~EF~~EI~~~~~~F~~EI~~~~~E  128 (157)
                      +++++..+...+++++.-+..++.+
T Consensus       130 ~EelR~kl~P~~eeL~~~~~~~~ee  154 (165)
T 1gs9_A          130 TEELRVRLASHLRKLRKRLLRDADD  154 (165)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3333333333333333333333333

>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A

Probab=81.38  E-value=4.1  Score=26.50  Aligned_cols=10  Identities=30%  Similarity=0.571  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q psy3509          47 RRLKEFQVEI   56 (157)
Q Consensus        47 ~emeeFk~EI   56 (157)
                      +++.-.|+||
T Consensus        22 kElqK~K~EI   31 (45)
T 1use_A           22 KELQKVKEEI   31 (45)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1gs9a_	144	Apolipoprotein E {Human (Homo sapiens), E4 [TaxId:	96.49
d1gs9a_	144	Apolipoprotein E {Human (Homo sapiens), E4 [TaxId:	95.97

>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]

Probab=96.49  E-value=0.0051  Score=42.50  Aligned_cols=72  Identities=14%  Similarity=0.308  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3509          73 EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSI  144 (157)
Q Consensus        73 Ef~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S~~  144 (157)
                      +++..+...++.++..+...|++.+--+..-+.+++.-+...++.++.-+..-+.+++..+...+++|+.++
T Consensus        67 e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~kL  138 (144)
T d1gs9a_          67 ETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL  138 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444445555555555555555555555555555555556666666666666666666666666554

>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]

Probab=95.97  E-value=0.015  Score=39.98  Aligned_cols=65  Identities=14%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509          67 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV  131 (157)
Q Consensus        67 I~~~~kEf~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~  131 (157)
                      +..++.+++..+...|++.+.-+..-+.+++--+...+++++.-+..-+++++..+..++.+++.
T Consensus        72 l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~  136 (144)
T d1gs9a_          72 LSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQK  136 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444445555555555555555555555555544443